Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416020 | sp|Q8H395|TI10B_ORYSJ | 36.810 | 163 | 65 | 6 | 1 | 129 | 71 | 229 | 7.01e-20 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416020 | G7JS77 | 74.419 | 129 | 22 | 2 | 1 | 121 | 1 | 126 | 9.24e-55 | 177 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1416020 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416020 | MtrunA17_Chr4g0070271 | 70.000 | 130 | 38 | 1 | 1 | 129 | 67 | 196 | 3.58e-55 | 171 |
| Msa1416020 | MtrunA17_Chr4g0070241 | 90.625 | 64 | 6 | 0 | 1 | 64 | 1 | 64 | 3.26e-36 | 119 |
| Msa1416020 | MtrunA17_Chr2g0301131 | 37.569 | 181 | 54 | 6 | 1 | 129 | 72 | 245 | 3.50e-27 | 101 |
| Msa1416020 | MtrunA17_Chr5g0399851 | 36.434 | 129 | 58 | 3 | 25 | 129 | 11 | 139 | 8.02e-20 | 79.3 |
| Msa1416020 | MtrunA17_Chr5g0399881 | 41.176 | 119 | 51 | 4 | 30 | 129 | 39 | 157 | 1.47e-18 | 77.0 |
| Msa1416020 | MtrunA17_Chr5g0399861 | 37.288 | 118 | 56 | 2 | 30 | 129 | 39 | 156 | 8.94e-18 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416020 | AT1G19180.2 | 40.000 | 120 | 45 | 3 | 30 | 122 | 53 | 172 | 8.06e-17 | 73.2 |
| Msa1416020 | AT1G19180.1 | 40.000 | 120 | 45 | 3 | 30 | 122 | 119 | 238 | 1.28e-16 | 73.6 |
| Msa1416020 | AT1G19180.3 | 40.000 | 120 | 45 | 3 | 30 | 122 | 119 | 238 | 1.28e-16 | 73.6 |
Find 23 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCACTTCTTCGATTCA+TGG | 0.237608 | tig0024312:+13239 | Msa1416020:CDS |
| AATGTCAACTGTGCAGTTTC+CGG | 0.323565 | tig0024312:-12946 | Msa1416020:intergenic |
| TTTAGCACCTAAAACAAGTA+TGG | 0.324800 | tig0024312:-14108 | Msa1416020:intergenic |
| TCGGAATCGCTTCTTTGATA+TGG | 0.333476 | tig0024312:-14054 | Msa1416020:intergenic |
| CAACCACCTCCTACACTAAC+TGG | 0.374106 | tig0024312:+13084 | Msa1416020:CDS |
| TAATGGAGAAGTTATTGTAT+TGG | 0.400656 | tig0024312:+12975 | Msa1416020:CDS |
| GCTTCTTTGATATGGTGATT+TGG | 0.408539 | tig0024312:-14046 | Msa1416020:intergenic |
| TAACTCAATGGTTAACAAAC+CGG | 0.425259 | tig0024312:+12927 | Msa1416020:CDS |
| GGTGGTTGAAGACTCATATC+AGG | 0.439597 | tig0024312:-13069 | Msa1416020:intergenic |
| AGCTCCTCAACTTTGTCAGC+AGG | 0.455494 | tig0024312:-13006 | Msa1416020:intergenic |
| TTACAGAACTAATAACTCAA+TGG | 0.476118 | tig0024312:+12915 | Msa1416020:intron |
| TTCTTCGATTCATGGAGAAA+AGG | 0.478429 | tig0024312:+13247 | Msa1416020:CDS |
| CAATTACCAGTTAGTGTAGG+AGG | 0.522487 | tig0024312:-13090 | Msa1416020:intergenic |
| TCATGGAGAAAAGGAAAGCC+AGG | 0.536399 | tig0024312:+13256 | Msa1416020:CDS |
| CATTTGCAAGCACTCAAACT+CGG | 0.560353 | tig0024312:+13034 | Msa1416020:CDS |
| CTGTGGATTCTTCGTCTCCA+AGG | 0.562813 | tig0024312:+12771 | Msa1416020:CDS |
| AAGTATGGAGTGGATTCAGT+AGG | 0.584677 | tig0024312:-14093 | Msa1416010:intergenic |
| CACCTAAAACAAGTATGGAG+TGG | 0.594681 | tig0024312:-14103 | Msa1416010:intergenic |
| CTCATATCAGGAATAACTGA+AGG | 0.598557 | tig0024312:-13057 | Msa1416010:intergenic |
| GTTTGTGGGAAATAAGTCCA+TGG | 0.603000 | tig0024312:-12726 | Msa1416010:intergenic |
| TTACCAGTTAGTGTAGGAGG+TGG | 0.608915 | tig0024312:-13087 | Msa1416010:intergenic |
| GAGCAATTACCAGTTAGTGT+AGG | 0.610011 | tig0024312:-13093 | Msa1416010:intergenic |
| CTTGGAGACGAAGAATCCAC+AGG | 0.670838 | tig0024312:-12770 | Msa1416010:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTTTGAAACAAATAA+AGG | + | tig0024312:13128-13147 | Msa1416020:intron | 10.0% |
| !!! | TAATATTTTGAAACAAATAA+AGG | + | tig0024312:13128-13147 | Msa1416020:intron | 10.0% |
| !!! | AAGGAAATATTTTTTGTATT+AGG | + | tig0024312:13147-13166 | Msa1416020:intron | 15.0% |
| !!! | AGGAAATATTTTTTGTATTA+GGG | + | tig0024312:13148-13167 | Msa1416020:intron | 15.0% |
| !! | AAGAAATAAAATTTATGATC+AGG | - | tig0024312:13192-13211 | Msa1416020:intergenic | 15.0% |
| !!! | TTATTTCTTTAAAGAAGATA+TGG | + | tig0024312:13203-13222 | Msa1416020:intron | 15.0% |
| !!! | TAAATTCAAGTTTTTATTCA+AGG | + | tig0024312:13297-13316 | Msa1416020:intron | 15.0% |
| !!! | TCAATCAACTAATATTTTTT+TGG | + | tig0024312:13434-13453 | Msa1416020:intron | 15.0% |
| !!! | CAATCAACTAATATTTTTTT+GGG | + | tig0024312:13435-13454 | Msa1416020:intron | 15.0% |
| !!! | ATTATGAATATTTTGATTAC+CGG | - | tig0024312:13552-13571 | Msa1416020:intergenic | 15.0% |
| !!! | AAGGAAATATTTTTTGTATT+AGG | + | tig0024312:13147-13166 | Msa1416020:intron | 15.0% |
| !!! | AGGAAATATTTTTTGTATTA+GGG | + | tig0024312:13148-13167 | Msa1416020:intron | 15.0% |
| !! | AAGAAATAAAATTTATGATC+AGG | - | tig0024312:13192-13211 | Msa1416020:intergenic | 15.0% |
| !!! | TTATTTCTTTAAAGAAGATA+TGG | + | tig0024312:13203-13222 | Msa1416020:intron | 15.0% |
| !!! | TAAATTCAAGTTTTTATTCA+AGG | + | tig0024312:13297-13316 | Msa1416020:intron | 15.0% |
| !!! | TCAATCAACTAATATTTTTT+TGG | + | tig0024312:13434-13453 | Msa1416020:intron | 15.0% |
| !!! | CAATCAACTAATATTTTTTT+GGG | + | tig0024312:13435-13454 | Msa1416020:intron | 15.0% |
| !!! | ATTATGAATATTTTGATTAC+CGG | - | tig0024312:13552-13571 | Msa1416020:intergenic | 15.0% |
| !! | TAACAGTAACACTATATATT+AGG | - | tig0024312:13996-14015 | Msa1416020:intergenic | 20.0% |
| !! | TAACAGTAACACTATATATT+AGG | - | tig0024312:13996-14015 | Msa1416020:intergenic | 20.0% |
| ! | TTACAGAACTAATAACTCAA+TGG | + | tig0024312:12915-12934 | Msa1416020:intron | 25.0% |
| !!! | CAGTTGACATTGTTTTATAA+TGG | + | tig0024312:12958-12977 | Msa1416020:CDS | 25.0% |
| ! | TAATGGAGAAGTTATTGTAT+TGG | + | tig0024312:12975-12994 | Msa1416020:CDS | 25.0% |
| !!! | TTGAATTTAATTTGTCTGAG+AGG | - | tig0024312:13286-13305 | Msa1416020:intergenic | 25.0% |
| ! | TTGTTTCAACATTTCAATCA+AGG | - | tig0024312:13412-13431 | Msa1416020:intergenic | 25.0% |
| !!! | GTAAAATGTGATTTTTGAGA+TGG | - | tig0024312:13784-13803 | Msa1416020:intergenic | 25.0% |
| ! | GTAACACTATATATTAGGTT+AGG | - | tig0024312:13991-14010 | Msa1416020:intergenic | 25.0% |
| ! | TTACAGAACTAATAACTCAA+TGG | + | tig0024312:12915-12934 | Msa1416020:intron | 25.0% |
| !!! | CAGTTGACATTGTTTTATAA+TGG | + | tig0024312:12958-12977 | Msa1416020:CDS | 25.0% |
| ! | TAATGGAGAAGTTATTGTAT+TGG | + | tig0024312:12975-12994 | Msa1416020:CDS | 25.0% |
| !!! | TTGAATTTAATTTGTCTGAG+AGG | - | tig0024312:13286-13305 | Msa1416020:intergenic | 25.0% |
| ! | TTGTTTCAACATTTCAATCA+AGG | - | tig0024312:13412-13431 | Msa1416020:intergenic | 25.0% |
| !!! | GTAAAATGTGATTTTTGAGA+TGG | - | tig0024312:13784-13803 | Msa1416020:intergenic | 25.0% |
| ! | GTAACACTATATATTAGGTT+AGG | - | tig0024312:13991-14010 | Msa1416020:intergenic | 25.0% |
| TAACTCAATGGTTAACAAAC+CGG | + | tig0024312:12927-12946 | Msa1416020:CDS | 30.0% | |
| GTTGTCGTAACTTTGTAATT+TGG | + | tig0024312:13678-13697 | Msa1416020:intron | 30.0% | |
| !! | AGTAGTTGATGATATGCATA+AGG | - | tig0024312:13751-13770 | Msa1416020:intergenic | 30.0% |
| TAGAATTGGATAGAATCAGT+TGG | - | tig0024312:13810-13829 | Msa1416020:intergenic | 30.0% | |
| ! | AACTGATTCTATCCAATTCT+AGG | + | tig0024312:13809-13828 | Msa1416020:intron | 30.0% |
| !! | TCAATTTCTAGTAACACAAG+TGG | - | tig0024312:13853-13872 | Msa1416020:intergenic | 30.0% |
| TAACTCAATGGTTAACAAAC+CGG | + | tig0024312:12927-12946 | Msa1416020:CDS | 30.0% | |
| GTTGTCGTAACTTTGTAATT+TGG | + | tig0024312:13678-13697 | Msa1416020:intron | 30.0% | |
| !! | AGTAGTTGATGATATGCATA+AGG | - | tig0024312:13751-13770 | Msa1416020:intergenic | 30.0% |
| TAGAATTGGATAGAATCAGT+TGG | - | tig0024312:13810-13829 | Msa1416020:intergenic | 30.0% | |
| ! | AACTGATTCTATCCAATTCT+AGG | + | tig0024312:13809-13828 | Msa1416020:intron | 30.0% |
| !! | TCAATTTCTAGTAACACAAG+TGG | - | tig0024312:13853-13872 | Msa1416020:intergenic | 30.0% |
| !!! | TTTTTTGGTGTCACGTTTGT+GGG | - | tig0024312:12743-12762 | Msa1162940:intergenic | 35.0% |
| ! | AGAAGCACAAAAACATACCT+TGG | - | tig0024312:12791-12810 | Msa1416020:intergenic | 35.0% |
| !!! | TTTTTTGCACACAAGCAATG+GGG | - | tig0024312:12852-12871 | Msa1416020:intergenic | 35.0% |
| !!! | CTTTTTTGCACACAAGCAAT+GGG | - | tig0024312:12853-12872 | Msa1416020:intergenic | 35.0% |
| !!! | ACTTTTTTGCACACAAGCAA+TGG | - | tig0024312:12854-12873 | Msa1416020:intergenic | 35.0% |
| CTCATATCAGGAATAACTGA+AGG | - | tig0024312:13060-13079 | Msa1416020:intergenic | 35.0% | |
| TTCTTCGATTCATGGAGAAA+AGG | + | tig0024312:13247-13266 | Msa1416020:CDS | 35.0% | |
| !!! | CAACTTTCGTGTTGTTTTCA+CGG | - | tig0024312:13662-13681 | Msa1416020:intergenic | 35.0% |
| ACTGCAAAGTAAGTAACAAG+AGG | - | tig0024312:13945-13964 | Msa1416020:intergenic | 35.0% | |
| ATTTCCTGAGTGATGTTGTT+TGG | + | tig0024312:13965-13984 | Msa1416020:intron | 35.0% | |
| GCTTCTTTGATATGGTGATT+TGG | - | tig0024312:14049-14068 | Msa1416020:intergenic | 35.0% | |
| !!! | GTGGATTCAGTAGGTTTTTT+TGG | - | tig0024312:14087-14106 | Msa1416020:intergenic | 35.0% |
| !!! | TTTTTTGGTGTCACGTTTGT+GGG | - | tig0024312:12743-12762 | Msa1416020:intergenic | 35.0% |
| ! | AGAAGCACAAAAACATACCT+TGG | - | tig0024312:12791-12810 | Msa1416020:intergenic | 35.0% |
| !!! | TTTTTTGCACACAAGCAATG+GGG | - | tig0024312:12852-12871 | Msa1416020:intergenic | 35.0% |
| !!! | CTTTTTTGCACACAAGCAAT+GGG | - | tig0024312:12853-12872 | Msa1416020:intergenic | 35.0% |
| !!! | ACTTTTTTGCACACAAGCAA+TGG | - | tig0024312:12854-12873 | Msa1416020:intergenic | 35.0% |
| CTCATATCAGGAATAACTGA+AGG | - | tig0024312:13060-13079 | Msa1416020:intergenic | 35.0% | |
| TTCTTCGATTCATGGAGAAA+AGG | + | tig0024312:13247-13266 | Msa1416020:CDS | 35.0% | |
| !!! | CAACTTTCGTGTTGTTTTCA+CGG | - | tig0024312:13662-13681 | Msa1416020:intergenic | 35.0% |
| ACTGCAAAGTAAGTAACAAG+AGG | - | tig0024312:13945-13964 | Msa1416020:intergenic | 35.0% | |
| ATTTCCTGAGTGATGTTGTT+TGG | + | tig0024312:13965-13984 | Msa1416020:intron | 35.0% | |
| GCTTCTTTGATATGGTGATT+TGG | - | tig0024312:14049-14068 | Msa1416020:intergenic | 35.0% | |
| !!! | GTGGATTCAGTAGGTTTTTT+TGG | - | tig0024312:14087-14106 | Msa1416020:intergenic | 35.0% |
| !!! | GTTTTTTGGTGTCACGTTTG+TGG | - | tig0024312:12744-12763 | Msa1162940:intergenic | 40.0% |
| ACCAAAAAACGTTACACCTG+TGG | + | tig0024312:12754-12773 | Msa1416020:CDS | 40.0% | |
| !!! | TCCACAGGTGTAACGTTTTT+TGG | - | tig0024312:12758-12777 | Msa1416020:intergenic | 40.0% |
| GCAATGGGGCAAAACAAAAA+TGG | - | tig0024312:12838-12857 | Msa1416020:intergenic | 40.0% | |
| AATGTCAACTGTGCAGTTTC+CGG | - | tig0024312:12949-12968 | Msa1416020:intergenic | 40.0% | |
| ! | TTTTCCTGCTGACAAAGTTG+AGG | + | tig0024312:13002-13021 | Msa1416020:CDS | 40.0% |
| CATTTGCAAGCACTCAAACT+CGG | + | tig0024312:13034-13053 | Msa1416020:CDS | 40.0% | |
| CAATTACCAGTTAGTGTAGG+AGG | - | tig0024312:13093-13112 | Msa1416020:intergenic | 40.0% | |
| GAGCAATTACCAGTTAGTGT+AGG | - | tig0024312:13096-13115 | Msa1416020:intergenic | 40.0% | |
| AGCTTCACTTCTTCGATTCA+TGG | + | tig0024312:13239-13258 | Msa1416020:CDS | 40.0% | |
| ATAGACAGAGACATGGAGAA+GGG | - | tig0024312:13389-13408 | Msa1416020:intergenic | 40.0% | |
| ATCAAGGATAGACAGAGACA+TGG | - | tig0024312:13396-13415 | Msa1416020:intergenic | 40.0% | |
| CAAGCAAAATCAAGGACTTC+CGG | + | tig0024312:13530-13549 | Msa1416020:intron | 40.0% | |
| CACTATTTATGTTCCTCTCG+TGG | - | tig0024312:13598-13617 | Msa1416020:intergenic | 40.0% | |
| !!! | TTCGTGTTGTTTTCACGGTA+CGG | - | tig0024312:13657-13676 | Msa1416020:intergenic | 40.0% |
| TCTAGTAACACAAGTGGCTT+TGG | - | tig0024312:13847-13866 | Msa1416020:intergenic | 40.0% | |
| CTCTAGTCCATTGTGCAAAT+TGG | + | tig0024312:13915-13934 | Msa1416020:intron | 40.0% | |
| AGGCAAACCAATTTGCACAA+TGG | - | tig0024312:13925-13944 | Msa1416020:intergenic | 40.0% | |
| TCGGAATCGCTTCTTTGATA+TGG | - | tig0024312:14057-14076 | Msa1416020:intergenic | 40.0% | |
| !!! | AGGTTTTTTTGGAGCAGAGT+CGG | - | tig0024312:14076-14095 | Msa1416020:intergenic | 40.0% |
| ! | AAGTATGGAGTGGATTCAGT+AGG | - | tig0024312:14096-14115 | Msa1416020:intergenic | 40.0% |
| !!! | GTTTTTTGGTGTCACGTTTG+TGG | - | tig0024312:12744-12763 | Msa1416020:intergenic | 40.0% |
| ACCAAAAAACGTTACACCTG+TGG | + | tig0024312:12754-12773 | Msa1416020:CDS | 40.0% | |
| !!! | TCCACAGGTGTAACGTTTTT+TGG | - | tig0024312:12758-12777 | Msa1416020:intergenic | 40.0% |
| GCAATGGGGCAAAACAAAAA+TGG | - | tig0024312:12838-12857 | Msa1416020:intergenic | 40.0% | |
| AATGTCAACTGTGCAGTTTC+CGG | - | tig0024312:12949-12968 | Msa1416020:intergenic | 40.0% | |
| ! | TTTTCCTGCTGACAAAGTTG+AGG | + | tig0024312:13002-13021 | Msa1416020:CDS | 40.0% |
| CATTTGCAAGCACTCAAACT+CGG | + | tig0024312:13034-13053 | Msa1416020:CDS | 40.0% | |
| CAATTACCAGTTAGTGTAGG+AGG | - | tig0024312:13093-13112 | Msa1416020:intergenic | 40.0% | |
| GAGCAATTACCAGTTAGTGT+AGG | - | tig0024312:13096-13115 | Msa1416020:intergenic | 40.0% | |
| AGCTTCACTTCTTCGATTCA+TGG | + | tig0024312:13239-13258 | Msa1416020:CDS | 40.0% | |
| ATAGACAGAGACATGGAGAA+GGG | - | tig0024312:13389-13408 | Msa1416020:intergenic | 40.0% | |
| ATCAAGGATAGACAGAGACA+TGG | - | tig0024312:13396-13415 | Msa1416020:intergenic | 40.0% | |
| CAAGCAAAATCAAGGACTTC+CGG | + | tig0024312:13530-13549 | Msa1416020:intron | 40.0% | |
| CACTATTTATGTTCCTCTCG+TGG | - | tig0024312:13598-13617 | Msa1416020:intergenic | 40.0% | |
| !!! | TTCGTGTTGTTTTCACGGTA+CGG | - | tig0024312:13657-13676 | Msa1416020:intergenic | 40.0% |
| TCTAGTAACACAAGTGGCTT+TGG | - | tig0024312:13847-13866 | Msa1416020:intergenic | 40.0% | |
| CTCTAGTCCATTGTGCAAAT+TGG | + | tig0024312:13915-13934 | Msa1416020:intron | 40.0% | |
| AGGCAAACCAATTTGCACAA+TGG | - | tig0024312:13925-13944 | Msa1416020:intergenic | 40.0% | |
| TCGGAATCGCTTCTTTGATA+TGG | - | tig0024312:14057-14076 | Msa1416020:intergenic | 40.0% | |
| !!! | AGGTTTTTTTGGAGCAGAGT+CGG | - | tig0024312:14076-14095 | Msa1416020:intergenic | 40.0% |
| ! | AAGTATGGAGTGGATTCAGT+AGG | - | tig0024312:14096-14115 | Msa1416020:intergenic | 40.0% |
| GGTGGTTGAAGACTCATATC+AGG | - | tig0024312:13072-13091 | Msa1416020:intergenic | 45.0% | |
| TTACCAGTTAGTGTAGGAGG+TGG | - | tig0024312:13090-13109 | Msa1416020:intergenic | 45.0% | |
| TCATGGAGAAAAGGAAAGCC+AGG | + | tig0024312:13256-13275 | Msa1416020:CDS | 45.0% | |
| ! | ATTTGTCTGAGAGGCATACC+TGG | - | tig0024312:13277-13296 | Msa1416020:intergenic | 45.0% |
| GATAGACAGAGACATGGAGA+AGG | - | tig0024312:13390-13409 | Msa1416020:intergenic | 45.0% | |
| ! | CTTGATTTTGCTTGCGTCGA+AGG | - | tig0024312:13524-13543 | Msa1416020:intergenic | 45.0% |
| CTTCGACGCAAGCAAAATCA+AGG | + | tig0024312:13522-13541 | Msa1416020:intron | 45.0% | |
| TCATAGTCAAGAACCACGAG+AGG | + | tig0024312:13582-13601 | Msa1416020:intron | 45.0% | |
| GTTGTGCTCATGCTCTTACA+AGG | - | tig0024312:13624-13643 | Msa1416020:intergenic | 45.0% | |
| CTCTTCAGCAAGCCTAGAAT+TGG | - | tig0024312:13824-13843 | Msa1416020:intergenic | 45.0% | |
| TAGGCCAAACAACATCACTC+AGG | - | tig0024312:13972-13991 | Msa1416020:intergenic | 45.0% | |
| GGTGGTTGAAGACTCATATC+AGG | - | tig0024312:13072-13091 | Msa1416020:intergenic | 45.0% | |
| TTACCAGTTAGTGTAGGAGG+TGG | - | tig0024312:13090-13109 | Msa1416020:intergenic | 45.0% | |
| TCATGGAGAAAAGGAAAGCC+AGG | + | tig0024312:13256-13275 | Msa1416020:CDS | 45.0% | |
| ! | ATTTGTCTGAGAGGCATACC+TGG | - | tig0024312:13277-13296 | Msa1416020:intergenic | 45.0% |
| GATAGACAGAGACATGGAGA+AGG | - | tig0024312:13390-13409 | Msa1416020:intergenic | 45.0% | |
| ! | CTTGATTTTGCTTGCGTCGA+AGG | - | tig0024312:13524-13543 | Msa1416020:intergenic | 45.0% |
| CTTCGACGCAAGCAAAATCA+AGG | + | tig0024312:13522-13541 | Msa1416020:intron | 45.0% | |
| TCATAGTCAAGAACCACGAG+AGG | + | tig0024312:13582-13601 | Msa1416020:intron | 45.0% | |
| GTTGTGCTCATGCTCTTACA+AGG | - | tig0024312:13624-13643 | Msa1416020:intergenic | 45.0% | |
| CTCTTCAGCAAGCCTAGAAT+TGG | - | tig0024312:13824-13843 | Msa1416020:intergenic | 45.0% | |
| TAGGCCAAACAACATCACTC+AGG | - | tig0024312:13972-13991 | Msa1416020:intergenic | 45.0% | |
| CTTGGAGACGAAGAATCCAC+AGG | - | tig0024312:12773-12792 | Msa1416020:intergenic | 50.0% | |
| CTGTGGATTCTTCGTCTCCA+AGG | + | tig0024312:12771-12790 | Msa1416020:CDS | 50.0% | |
| AGCTCCTCAACTTTGTCAGC+AGG | - | tig0024312:13009-13028 | Msa1416020:intergenic | 50.0% | |
| CAACCACCTCCTACACTAAC+TGG | + | tig0024312:13084-13103 | Msa1416020:CDS | 50.0% | |
| CTTGGAGACGAAGAATCCAC+AGG | - | tig0024312:12773-12792 | Msa1416020:intergenic | 50.0% | |
| CTGTGGATTCTTCGTCTCCA+AGG | + | tig0024312:12771-12790 | Msa1416020:CDS | 50.0% | |
| AGCTCCTCAACTTTGTCAGC+AGG | - | tig0024312:13009-13028 | Msa1416020:intergenic | 50.0% | |
| CAACCACCTCCTACACTAAC+TGG | + | tig0024312:13084-13103 | Msa1416020:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024312 | gene | 12728 | 14122 | 12728 | ID=Msa1416020;Name=Msa1416020 |
| tig0024312 | mRNA | 12728 | 14122 | 12728 | ID=Msa1416020-mRNA-1;Parent=Msa1416020;Name=Msa1416020-mRNA-1;_AED=0.28;_eAED=0.29;_QI=0|0|0|0.75|1|1|4|0|130 |
| tig0024312 | exon | 12728 | 12792 | 12728 | ID=Msa1416020-mRNA-1:exon:22729;Parent=Msa1416020-mRNA-1 |
| tig0024312 | exon | 12921 | 13105 | 12921 | ID=Msa1416020-mRNA-1:exon:22730;Parent=Msa1416020-mRNA-1 |
| tig0024312 | exon | 13220 | 13277 | 13220 | ID=Msa1416020-mRNA-1:exon:22731;Parent=Msa1416020-mRNA-1 |
| tig0024312 | exon | 14038 | 14122 | 14038 | ID=Msa1416020-mRNA-1:exon:22732;Parent=Msa1416020-mRNA-1 |
| tig0024312 | CDS | 12728 | 12792 | 12728 | ID=Msa1416020-mRNA-1:cds;Parent=Msa1416020-mRNA-1 |
| tig0024312 | CDS | 12921 | 13105 | 12921 | ID=Msa1416020-mRNA-1:cds;Parent=Msa1416020-mRNA-1 |
| tig0024312 | CDS | 13220 | 13277 | 13220 | ID=Msa1416020-mRNA-1:cds;Parent=Msa1416020-mRNA-1 |
| tig0024312 | CDS | 14038 | 14122 | 14038 | ID=Msa1416020-mRNA-1:cds;Parent=Msa1416020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
