Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416170 | sp|Q9FIM0|AGL82_ARATH | 30.380 | 158 | 105 | 3 | 6 | 160 | 6 | 161 | 8.98e-17 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416170 | A0A072VR19 | 92.090 | 354 | 19 | 2 | 1 | 352 | 1 | 347 | 0.0 | 655 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1416170 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416170 | MtrunA17_Chr1g0212151 | 92.090 | 354 | 19 | 2 | 1 | 352 | 1 | 347 | 0.0 | 655 |
| Msa1416170 | MtrunA17_Chr6g0457851 | 73.596 | 356 | 80 | 3 | 1 | 352 | 11 | 356 | 0.0 | 533 |
| Msa1416170 | MtrunA17_Chr6g0449861 | 61.667 | 360 | 117 | 7 | 1 | 352 | 9 | 355 | 1.07e-143 | 413 |
| Msa1416170 | MtrunA17_Chr6g0449851 | 56.742 | 356 | 109 | 6 | 1 | 352 | 1 | 315 | 5.08e-131 | 379 |
| Msa1416170 | MtrunA17_Chr4g0059631 | 41.935 | 155 | 87 | 1 | 1 | 155 | 1 | 152 | 1.76e-35 | 131 |
| Msa1416170 | MtrunA17_Chr1g0212471 | 32.796 | 186 | 124 | 1 | 1 | 186 | 1 | 185 | 1.16e-32 | 122 |
| Msa1416170 | MtrunA17_Chr4g0022641 | 37.126 | 167 | 102 | 1 | 1 | 167 | 1 | 164 | 2.06e-30 | 120 |
| Msa1416170 | MtrunA17_Chr2g0303981 | 38.365 | 159 | 93 | 2 | 3 | 160 | 5 | 159 | 6.75e-29 | 111 |
| Msa1416170 | MtrunA17_Chr5g0432691 | 34.454 | 119 | 70 | 4 | 1 | 118 | 1 | 112 | 1.69e-15 | 73.9 |
| Msa1416170 | MtrunA17_Chr3g0134451 | 33.945 | 109 | 64 | 3 | 1 | 109 | 1 | 101 | 3.10e-14 | 73.2 |
| Msa1416170 | MtrunA17_Chr3g0107381 | 23.478 | 230 | 151 | 8 | 1 | 214 | 1 | 221 | 4.67e-14 | 71.2 |
| Msa1416170 | MtrunA17_Chr4g0014321 | 35.897 | 117 | 60 | 4 | 1 | 116 | 1 | 103 | 2.65e-13 | 68.9 |
| Msa1416170 | MtrunA17_Chr8g0379021 | 30.625 | 160 | 84 | 5 | 2 | 144 | 12 | 161 | 3.84e-12 | 64.7 |
| Msa1416170 | MtrunA17_Chr3g0107351 | 32.759 | 116 | 69 | 4 | 3 | 116 | 2 | 110 | 7.24e-12 | 63.5 |
| Msa1416170 | MtrunA17_Chr2g0284911 | 28.025 | 157 | 98 | 4 | 1 | 154 | 16 | 160 | 1.42e-11 | 64.7 |
| Msa1416170 | MtrunA17_Chr3g0107341 | 34.188 | 117 | 66 | 5 | 3 | 116 | 2 | 110 | 1.83e-11 | 62.4 |
| Msa1416170 | MtrunA17_Chr3g0107361 | 29.375 | 160 | 99 | 6 | 3 | 154 | 2 | 155 | 4.14e-11 | 61.2 |
| Msa1416170 | MtrunA17_Chr1g0197321 | 25.949 | 158 | 103 | 5 | 1 | 150 | 1 | 152 | 4.28e-11 | 61.2 |
| Msa1416170 | MtrunA17_Chr3g0110131 | 25.703 | 249 | 138 | 8 | 1 | 214 | 1 | 237 | 4.72e-11 | 62.8 |
| Msa1416170 | MtrunA17_Chr2g0283941 | 31.481 | 108 | 66 | 4 | 2 | 108 | 3 | 103 | 4.86e-11 | 62.8 |
| Msa1416170 | MtrunA17_Chr3g0107331 | 30.909 | 110 | 69 | 3 | 3 | 111 | 2 | 105 | 4.87e-11 | 60.8 |
| Msa1416170 | MtrunA17_Chr8g0380021 | 27.632 | 152 | 101 | 3 | 1 | 152 | 17 | 159 | 5.61e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416170 | AT5G55690.1 | 39.310 | 145 | 80 | 2 | 1 | 144 | 1 | 138 | 8.70e-25 | 103 |
| Msa1416170 | AT5G55690.2 | 39.310 | 145 | 80 | 2 | 1 | 144 | 1 | 138 | 8.70e-25 | 103 |
| Msa1416170 | AT5G58890.1 | 30.380 | 158 | 105 | 3 | 6 | 160 | 6 | 161 | 9.12e-18 | 83.6 |
| Msa1416170 | AT3G18650.1 | 25.651 | 269 | 156 | 9 | 16 | 267 | 31 | 272 | 5.92e-15 | 76.6 |
| Msa1416170 | AT1G22590.2 | 29.677 | 155 | 98 | 3 | 1 | 150 | 1 | 149 | 1.00e-12 | 66.2 |
| Msa1416170 | AT1G65330.1 | 33.333 | 111 | 67 | 4 | 3 | 112 | 2 | 106 | 1.25e-12 | 68.2 |
| Msa1416170 | AT1G65300.1 | 33.636 | 110 | 64 | 4 | 5 | 112 | 4 | 106 | 1.49e-12 | 68.2 |
| Msa1416170 | AT3G05860.2 | 37.662 | 77 | 42 | 2 | 1 | 77 | 1 | 71 | 1.93e-12 | 66.6 |
| Msa1416170 | AT2G28700.1 | 26.842 | 190 | 117 | 7 | 1 | 182 | 1 | 176 | 1.99e-12 | 68.2 |
| Msa1416170 | AT3G05860.3 | 37.662 | 77 | 42 | 2 | 1 | 77 | 1 | 71 | 2.94e-12 | 66.6 |
| Msa1416170 | AT3G05860.1 | 37.662 | 77 | 42 | 2 | 1 | 77 | 1 | 71 | 3.37e-12 | 66.6 |
| Msa1416170 | AT5G23260.3 | 27.329 | 161 | 100 | 4 | 1 | 157 | 1 | 148 | 8.55e-12 | 65.1 |
| Msa1416170 | AT5G26650.1 | 32.174 | 115 | 67 | 4 | 5 | 116 | 3 | 109 | 1.39e-11 | 65.9 |
| Msa1416170 | AT5G13790.2 | 31.967 | 122 | 74 | 3 | 1 | 122 | 1 | 113 | 6.02e-11 | 63.2 |
| Msa1416170 | AT5G23260.1 | 26.901 | 171 | 97 | 5 | 1 | 157 | 17 | 173 | 6.49e-11 | 63.2 |
| Msa1416170 | AT5G27960.1 | 31.193 | 109 | 68 | 4 | 5 | 112 | 3 | 105 | 7.49e-11 | 63.5 |
| Msa1416170 | AT2G03060.3 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 7.74e-11 | 63.9 |
| Msa1416170 | AT2G03060.7 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 7.74e-11 | 63.9 |
| Msa1416170 | AT2G03060.1 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 7.74e-11 | 63.9 |
| Msa1416170 | AT2G40210.1 | 31.731 | 104 | 64 | 3 | 1 | 103 | 1 | 98 | 7.85e-11 | 63.9 |
| Msa1416170 | AT4G09960.5 | 27.215 | 158 | 98 | 5 | 1 | 154 | 11 | 155 | 8.25e-11 | 62.4 |
| Msa1416170 | AT4G09960.1 | 27.215 | 158 | 98 | 5 | 1 | 154 | 1 | 145 | 8.68e-11 | 62.0 |
| Msa1416170 | AT4G09960.6 | 27.215 | 158 | 98 | 5 | 1 | 154 | 2 | 146 | 8.88e-11 | 62.0 |
| Msa1416170 | AT2G03060.2 | 22.727 | 176 | 121 | 4 | 1 | 173 | 1 | 164 | 9.45e-11 | 63.5 |
Find 96 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTTTCCATATTGATTT+TGG | 0.055519 | tig0024333:+40354 | None:intergenic |
| CCACATGGATTTCAACTTAA+TGG | 0.122963 | tig0024333:-40214 | Msa1416170:CDS |
| TTGTCTTTAGGCCATGTTTC+AGG | 0.191776 | tig0024333:+41018 | None:intergenic |
| TTGATGTTAATGGGGCTAAT+TGG | 0.199081 | tig0024333:-40441 | Msa1416170:CDS |
| AAATCCACGACCTACAAAAT+TGG | 0.234450 | tig0024333:+41047 | None:intergenic |
| TACAAGAATATTGATGTTAA+TGG | 0.237026 | tig0024333:-40451 | Msa1416170:CDS |
| GCATTTCCATTGTAATAGTA+TGG | 0.257144 | tig0024333:+40301 | None:intergenic |
| ACTTCCGTGATTTCTCCTTT+TGG | 0.266267 | tig0024333:+41163 | None:intergenic |
| TACTGCTACGCAACAAGTTC+TGG | 0.294127 | tig0024333:+39091 | None:intergenic |
| ACAAGAATATTGATGTTAAT+GGG | 0.303821 | tig0024333:-40450 | Msa1416170:CDS |
| AACAAGAGGATATGTCTATC+TGG | 0.312544 | tig0024333:-39029 | Msa1416170:CDS |
| GGTTATCAGGACCGATGCTT+CGG | 0.326389 | tig0024333:-40382 | Msa1416170:CDS |
| GATATTATTTGCTAGCAAAC+TGG | 0.357133 | tig0024333:-40797 | Msa1416170:CDS |
| AATGAATCTTTCAATTCTCT+TGG | 0.359377 | tig0024333:-40832 | Msa1416170:CDS |
| GGGTCGTGGAAGAATATCTA+TGG | 0.367126 | tig0024333:-41193 | Msa1416170:CDS |
| TGATGTTAATGGGGCTAATT+GGG | 0.367522 | tig0024333:-40440 | Msa1416170:CDS |
| ATTAACATCAATATTCTTGT+AGG | 0.368101 | tig0024333:+40453 | None:intergenic |
| TGGGGCTAATTGGGCCAATC+AGG | 0.372470 | tig0024333:-40431 | Msa1416170:CDS |
| AATGTTAATGATACCTATAA+TGG | 0.373254 | tig0024333:-40406 | Msa1416170:CDS |
| TCTTGAACATCATAGATCTT+AGG | 0.373714 | tig0024333:+40940 | None:intergenic |
| ATGTTAATGATACCTATAAT+GGG | 0.375349 | tig0024333:-40405 | Msa1416170:CDS |
| ATCATTAACATTAACCTGAT+TGG | 0.375551 | tig0024333:+40417 | None:intergenic |
| ATGGTGCGAGCTTTGTATAT+TGG | 0.377737 | tig0024333:+40513 | None:intergenic |
| CGGGCTTCCCAAAATCAATA+TGG | 0.380849 | tig0024333:-40362 | Msa1416170:CDS |
| GTTATCAGGACCGATGCTTC+GGG | 0.385864 | tig0024333:-40381 | Msa1416170:CDS |
| GGGAAAGTGTGCAAGGCAAT+AGG | 0.393610 | tig0024333:+40259 | None:intergenic |
| GATTTGAGAGATTCTGAAAA+GGG | 0.398612 | tig0024333:+40239 | None:intergenic |
| CTTGGGAATCTCACCTTAAG+AGG | 0.415136 | tig0024333:+39150 | None:intergenic |
| TATGCTAAAAGAAGATCATA+AGG | 0.417664 | tig0024333:-40740 | Msa1416170:CDS |
| GGTGTCTGCTACCCCTCTTA+AGG | 0.424800 | tig0024333:-39163 | Msa1416170:CDS |
| TTTCCAAGTGTCCACTCAAA+AGG | 0.425572 | tig0024333:-39124 | Msa1416170:CDS |
| AAGGAAGGATGGAGCTGAAA+AGG | 0.426747 | tig0024333:-40338 | Msa1416170:CDS |
| TTATCACTAATATTCATCAT+TGG | 0.435936 | tig0024333:+40598 | None:intergenic |
| AACATCAACATCACAAAGAA+TGG | 0.436469 | tig0024333:+41089 | None:intergenic |
| ATCCATTCCATTACTGTTGG+AGG | 0.440584 | tig0024333:-39052 | Msa1416170:CDS |
| ACTATAACACAACAAATGAT+AGG | 0.448494 | tig0024333:-40966 | Msa1416170:CDS |
| TTAACATCAATATTCTTGTA+GGG | 0.460944 | tig0024333:+40454 | None:intergenic |
| GTGGACACTTGGAAAAGTCT+TGG | 0.468552 | tig0024333:+39132 | None:intergenic |
| AATCCACGACCTACAAAATT+GGG | 0.470390 | tig0024333:+41048 | None:intergenic |
| TCTATCCATTCCATTACTGT+TGG | 0.473770 | tig0024333:-39055 | Msa1416170:CDS |
| GGAAAGTGTGCAAGGCAATA+GGG | 0.475843 | tig0024333:+40260 | None:intergenic |
| AGATTTGAGAGATTCTGAAA+AGG | 0.476219 | tig0024333:+40238 | None:intergenic |
| TAGTTTCTCTTTACGCACTT+TGG | 0.478267 | tig0024333:+40876 | None:intergenic |
| CAAGCTCATATGTTCATGAA+TGG | 0.478657 | tig0024333:-40169 | Msa1416170:CDS |
| ATCTATGGAACTCATCCAAA+AGG | 0.478947 | tig0024333:-41178 | Msa1416170:CDS |
| GAAGTAGTAACTAGGATTCA+AGG | 0.479038 | tig0024333:+40663 | None:intergenic |
| GAAGGTTGAGAGCTTTGTCC+CGG | 0.483719 | tig0024333:+40547 | None:intergenic |
| TTGAAAGATTCATTCCAAGT+TGG | 0.490806 | tig0024333:+40841 | None:intergenic |
| TGGACACTTGGAAAAGTCTT+GGG | 0.493815 | tig0024333:+39133 | None:intergenic |
| TCACTAATATTCATCATTGG+AGG | 0.494747 | tig0024333:+40601 | None:intergenic |
| ATCAATATGGAAAGGAAGGA+TGG | 0.505258 | tig0024333:-40349 | Msa1416170:CDS |
| CAAAATCAATATGGAAAGGA+AGG | 0.508161 | tig0024333:-40353 | Msa1416170:CDS |
| GTCAACATTTCAAAAGAGAA+AGG | 0.514992 | tig0024333:-41142 | Msa1416170:CDS |
| TTGAAGTGGCCAAAACCCTA+AGG | 0.517435 | tig0024333:+40570 | None:intergenic |
| TCTTGTTCCTCCAACAGTAA+TGG | 0.528355 | tig0024333:+39045 | None:intergenic |
| ACAAGAGGATATGTCTATCT+GGG | 0.536876 | tig0024333:-39028 | Msa1416170:CDS |
| CTCATATGTTCATGAATGGA+AGG | 0.537554 | tig0024333:-40165 | Msa1416170:CDS |
| TCGTCACCATACTATTACAA+TGG | 0.539170 | tig0024333:-40307 | Msa1416170:CDS |
| TTCCTCCAACAGTAATGGAA+TGG | 0.542058 | tig0024333:+39050 | None:intergenic |
| TAAAGATGATGTATCCAACT+TGG | 0.548629 | tig0024333:-40855 | Msa1416170:CDS |
| ATCTTTCAATTCTCTTGGAG+CGG | 0.552140 | tig0024333:-40827 | Msa1416170:CDS |
| ACTTAATGGATTCAATGCTA+AGG | 0.552446 | tig0024333:-40200 | Msa1416170:CDS |
| GGATATGTCTATCTGGGATG+AGG | 0.552655 | tig0024333:-39022 | Msa1416170:CDS |
| ATATTGGAAATCAAAGAAGA+AGG | 0.553651 | tig0024333:+40529 | None:intergenic |
| ATGCTAAAAGAAGATCATAA+GGG | 0.556585 | tig0024333:-40739 | Msa1416170:CDS |
| ACATTTCAAAAGAGAAAGGA+AGG | 0.560555 | tig0024333:-41138 | Msa1416170:CDS |
| GAGCTTTGTCCCGGTTGAAG+TGG | 0.560628 | tig0024333:+40556 | None:intergenic |
| ATGAGATTGAAGTAGTAACT+AGG | 0.569090 | tig0024333:+40655 | None:intergenic |
| ATTACTGTTGGAGGAACAAG+AGG | 0.569445 | tig0024333:-39043 | Msa1416170:CDS |
| TTGGGAATCTCACCTTAAGA+GGG | 0.571012 | tig0024333:+39151 | None:intergenic |
| TGAAGTGGCCAAAACCCTAA+GGG | 0.571128 | tig0024333:+40571 | None:intergenic |
| TATTCGTAGAAAATGGGTCG+TGG | 0.573273 | tig0024333:-41207 | None:intergenic |
| TTCCCAAAATCAATATGGAA+AGG | 0.576621 | tig0024333:-40357 | Msa1416170:CDS |
| CTCGCACCATGTGGAGTCTG+AGG | 0.578924 | tig0024333:-40500 | Msa1416170:CDS |
| TGTTAATGATACCTATAATG+GGG | 0.582350 | tig0024333:-40404 | Msa1416170:CDS |
| CACCATGTGGAGTCTGAGGA+GGG | 0.590680 | tig0024333:-40496 | Msa1416170:CDS |
| TAACATCAATATTCTTGTAG+GGG | 0.591713 | tig0024333:+40455 | None:intergenic |
| TCATCCAAAAGGAGAAATCA+CGG | 0.593512 | tig0024333:-41167 | Msa1416170:CDS |
| CTGAAAAGGGAAAGTGTGCA+AGG | 0.597692 | tig0024333:+40252 | None:intergenic |
| ATATGTTTGTGCTTGAGACA+TGG | 0.597890 | tig0024333:+40624 | None:intergenic |
| ATCTGGGATGAGGAGATGCA+TGG | 0.603930 | tig0024333:-39012 | Msa1416170:CDS |
| CAAGAATATTGATGTTAATG+GGG | 0.607609 | tig0024333:-40449 | Msa1416170:CDS |
| CTATTACAATGGAAATGCAA+TGG | 0.613734 | tig0024333:-40296 | Msa1416170:CDS |
| GCACCATGTGGAGTCTGAGG+AGG | 0.614956 | tig0024333:-40497 | Msa1416170:CDS |
| TACCCTCCTCAGACTCCACA+TGG | 0.630866 | tig0024333:+40494 | None:intergenic |
| GATTTGCTGAACCTGAAACA+TGG | 0.641427 | tig0024333:-41029 | Msa1416170:CDS |
| GAAGTGGCCAAAACCCTAAG+GGG | 0.646061 | tig0024333:+40572 | None:intergenic |
| TAGTAACTAGGATTCAAGGA+AGG | 0.647567 | tig0024333:+40667 | None:intergenic |
| GTTAATGATACCTATAATGG+GGG | 0.651079 | tig0024333:-40403 | Msa1416170:CDS |
| AGAGGGGTAGCAGACACCCA+AGG | 0.659168 | tig0024333:+39168 | None:intergenic |
| AATCTCTCAAATCTACCACA+TGG | 0.661283 | tig0024333:-40229 | Msa1416170:CDS |
| TATACAAAGCTCGCACCATG+TGG | 0.663687 | tig0024333:-40509 | Msa1416170:CDS |
| TGGGAATCTCACCTTAAGAG+GGG | 0.696658 | tig0024333:+39152 | None:intergenic |
| AATAGCTCATGAATCACACA+AGG | 0.705760 | tig0024333:-40710 | Msa1416170:CDS |
| ATGGCCTAAAGACAAAAGAG+AGG | 0.713382 | tig0024333:-41010 | Msa1416170:CDS |
| CCATTAAGTTGAAATCCATG+TGG | 0.755933 | tig0024333:+40214 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAACAAAAATTTCTTTTCT+TGG | - | tig0024333:40168-40187 | Msa1416170:CDS | 15.0% |
| !! | TAATACTAATATATAGATGA+GGG | - | tig0024333:40356-40375 | Msa1416170:CDS | 15.0% |
| !! | TTTGTTTCATAACATAAAAA+AGG | + | tig0024333:40393-40412 | None:intergenic | 15.0% |
| !!! | ATTTTGAAGAAATTAATGAT+AGG | - | tig0024333:40465-40484 | Msa1416170:CDS | 15.0% |
| !!! | TTTTGAAGAAATTAATGATA+GGG | - | tig0024333:40466-40485 | Msa1416170:CDS | 15.0% |
| !! | ATAAACTTGAAAATACAAAT+AGG | - | tig0024333:40811-40830 | Msa1416170:CDS | 15.0% |
| !! | TTTCTTAATTACAAGTAATT+TGG | - | tig0024333:40847-40866 | Msa1416170:CDS | 15.0% |
| !! | TTATCACTAATATTCATCAT+TGG | + | tig0024333:39605-39624 | None:intergenic | 20.0% |
| !! | TTAACATCAATATTCTTGTA+GGG | + | tig0024333:39749-39768 | None:intergenic | 20.0% |
| !! | ATTAACATCAATATTCTTGT+AGG | + | tig0024333:39750-39769 | None:intergenic | 20.0% |
| !! | TACAAGAATATTGATGTTAA+TGG | - | tig0024333:39749-39768 | Msa1416170:intron | 20.0% |
| !! | ACAAGAATATTGATGTTAAT+GGG | - | tig0024333:39750-39769 | Msa1416170:intron | 20.0% |
| !! | AATGTTAATGATACCTATAA+TGG | - | tig0024333:39794-39813 | Msa1416170:intron | 20.0% |
| !! | ATGTTAATGATACCTATAAT+GGG | - | tig0024333:39795-39814 | Msa1416170:intron | 20.0% |
| !! | CTAATACTAATATATAGATG+AGG | - | tig0024333:40355-40374 | Msa1416170:CDS | 20.0% |
| !!! | CACTGATGTAATTTTTATAT+TGG | - | tig0024333:40417-40436 | Msa1416170:CDS | 20.0% |
| !! | AATATGACAAACTAAAATGT+TGG | + | tig0024333:40573-40592 | None:intergenic | 20.0% |
| !!! | AGTTATTATTCTAGGATTTA+AGG | + | tig0024333:40783-40802 | None:intergenic | 20.0% |
| !! | CATAACTAAGTTATTATTCT+AGG | + | tig0024333:40791-40810 | None:intergenic | 20.0% |
| !! | AACTATGGATATTTCTTATT+AGG | + | tig0024333:40885-40904 | None:intergenic | 20.0% |
| !! | AGTGACAATATTAATATTCA+TGG | - | tig0024333:40912-40931 | Msa1416170:CDS | 20.0% |
| !! | TTGTGTTATAGTACTTTTGA+AGG | + | tig0024333:39226-39245 | None:intergenic | 25.0% |
| ! | ACTATAACACAACAAATGAT+AGG | - | tig0024333:39234-39253 | Msa1416170:intron | 25.0% |
| !!! | TGATGTTCAAGAGTATTTTA+AGG | - | tig0024333:39271-39290 | Msa1416170:intron | 25.0% |
| !!! | TTCAAGAGTATTTTAAGGAA+AGG | - | tig0024333:39276-39295 | Msa1416170:intron | 25.0% |
| ! | AATGAATCTTTCAATTCTCT+TGG | - | tig0024333:39368-39387 | Msa1416170:intron | 25.0% |
| ! | TATGCTAAAAGAAGATCATA+AGG | - | tig0024333:39460-39479 | Msa1416170:intron | 25.0% |
| ! | ATGCTAAAAGAAGATCATAA+GGG | - | tig0024333:39461-39480 | Msa1416170:intron | 25.0% |
| ! | ATATTGGAAATCAAAGAAGA+AGG | + | tig0024333:39674-39693 | None:intergenic | 25.0% |
| ! | TAACATCAATATTCTTGTAG+GGG | + | tig0024333:39748-39767 | None:intergenic | 25.0% |
| ! | CAAGAATATTGATGTTAATG+GGG | - | tig0024333:39751-39770 | Msa1416170:intron | 25.0% |
| ! | ATCATTAACATTAACCTGAT+TGG | + | tig0024333:39786-39805 | None:intergenic | 25.0% |
| ! | TGTTAATGATACCTATAATG+GGG | - | tig0024333:39796-39815 | Msa1416170:intron | 25.0% |
| !!! | TTCCTTTCCATATTGATTTT+GGG | + | tig0024333:39848-39867 | None:intergenic | 25.0% |
| ! | TGGTGCTTATTATATATTTC+TGG | - | tig0024333:40213-40232 | Msa1416170:CDS | 25.0% |
| ! | GGTGCTTATTATATATTTCT+GGG | - | tig0024333:40214-40233 | Msa1416170:CDS | 25.0% |
| ! | TGGATATTTCTTATTAGGTA+GGG | + | tig0024333:40880-40899 | None:intergenic | 25.0% |
| ! | ATGGATATTTCTTATTAGGT+AGG | + | tig0024333:40881-40900 | None:intergenic | 25.0% |
| !! | TTGTCACTTCAAAATAACTA+TGG | + | tig0024333:40900-40919 | None:intergenic | 25.0% |
| !! | ATTTTTCACTGAGTATTACT+AGG | - | tig0024333:40974-40993 | Msa1416170:CDS | 25.0% |
| GTCAACATTTCAAAAGAGAA+AGG | - | tig0024333:39058-39077 | Msa1416170:CDS | 30.0% | |
| ACATTTCAAAAGAGAAAGGA+AGG | - | tig0024333:39062-39081 | Msa1416170:CDS | 30.0% | |
| AACATCAACATCACAAAGAA+TGG | + | tig0024333:39114-39133 | None:intergenic | 30.0% | |
| TCTTGAACATCATAGATCTT+AGG | + | tig0024333:39263-39282 | None:intergenic | 30.0% | |
| TAAAGATGATGTATCCAACT+TGG | - | tig0024333:39345-39364 | Msa1416170:intron | 30.0% | |
| TTGAAAGATTCATTCCAAGT+TGG | + | tig0024333:39362-39381 | None:intergenic | 30.0% | |
| ! | GATATTATTTGCTAGCAAAC+TGG | - | tig0024333:39403-39422 | Msa1416170:intron | 30.0% |
| ATGAGATTGAAGTAGTAACT+AGG | + | tig0024333:39548-39567 | None:intergenic | 30.0% | |
| TCACTAATATTCATCATTGG+AGG | + | tig0024333:39602-39621 | None:intergenic | 30.0% | |
| ATTAGTGATAAAAACCCCTT+AGG | - | tig0024333:39614-39633 | Msa1416170:intron | 30.0% | |
| TTAGTGATAAAAACCCCTTA+GGG | - | tig0024333:39615-39634 | Msa1416170:intron | 30.0% | |
| GTTAATGATACCTATAATGG+GGG | - | tig0024333:39797-39816 | Msa1416170:intron | 30.0% | |
| TTCCCAAAATCAATATGGAA+AGG | - | tig0024333:39843-39862 | Msa1416170:intron | 30.0% | |
| !!! | CTTCCTTTCCATATTGATTT+TGG | + | tig0024333:39849-39868 | None:intergenic | 30.0% |
| CAAAATCAATATGGAAAGGA+AGG | - | tig0024333:39847-39866 | Msa1416170:intron | 30.0% | |
| GCATTTCCATTGTAATAGTA+TGG | + | tig0024333:39902-39921 | None:intergenic | 30.0% | |
| CTATTACAATGGAAATGCAA+TGG | - | tig0024333:39904-39923 | Msa1416170:intron | 30.0% | |
| ! | GATTTGAGAGATTCTGAAAA+GGG | + | tig0024333:39964-39983 | None:intergenic | 30.0% |
| ! | AGATTTGAGAGATTCTGAAA+AGG | + | tig0024333:39965-39984 | None:intergenic | 30.0% |
| !! | ACTTAATGGATTCAATGCTA+AGG | - | tig0024333:40000-40019 | Msa1416170:intron | 30.0% |
| TTTAAGTCGAACAAATAGCT+TGG | - | tig0024333:40193-40212 | Msa1416170:CDS | 30.0% | |
| AGAAATTAATGATAGGGAGA+TGG | - | tig0024333:40472-40491 | Msa1416170:CDS | 30.0% | |
| ATAAACTTCCTCAATTTCGT+CGG | - | tig0024333:40624-40643 | Msa1416170:CDS | 30.0% | |
| AATTTCGTCGGAAATAGAAA+AGG | - | tig0024333:40636-40655 | Msa1416170:CDS | 30.0% | |
| AGATAAGGACTACCAATATA+TGG | + | tig0024333:40760-40779 | None:intergenic | 30.0% | |
| !! | TTCTAGGATTTAAGGAGATA+AGG | + | tig0024333:40775-40794 | None:intergenic | 30.0% |
| TTTCTTATTAGGTAGGGTAA+AGG | + | tig0024333:40874-40893 | None:intergenic | 30.0% | |
| ATCTATGGAACTCATCCAAA+AGG | - | tig0024333:39022-39041 | Msa1416170:CDS | 35.0% | |
| TCATCCAAAAGGAGAAATCA+CGG | - | tig0024333:39033-39052 | Msa1416170:CDS | 35.0% | |
| AATCCACGACCTACAAAATT+GGG | + | tig0024333:39155-39174 | None:intergenic | 35.0% | |
| AAATCCACGACCTACAAAAT+TGG | + | tig0024333:39156-39175 | None:intergenic | 35.0% | |
| ! | TGTACCTCTCTTTTGTCTTT+AGG | + | tig0024333:39197-39216 | None:intergenic | 35.0% |
| TAGTTTCTCTTTACGCACTT+TGG | + | tig0024333:39327-39346 | None:intergenic | 35.0% | |
| ATCTTTCAATTCTCTTGGAG+CGG | - | tig0024333:39373-39392 | Msa1416170:intron | 35.0% | |
| AATAGCTCATGAATCACACA+AGG | - | tig0024333:39490-39509 | Msa1416170:intron | 35.0% | |
| TAGTAACTAGGATTCAAGGA+AGG | + | tig0024333:39536-39555 | None:intergenic | 35.0% | |
| GAAGTAGTAACTAGGATTCA+AGG | + | tig0024333:39540-39559 | None:intergenic | 35.0% | |
| ATATGTTTGTGCTTGAGACA+TGG | + | tig0024333:39579-39598 | None:intergenic | 35.0% | |
| ! | ATAAAAACCCCTTAGGGTTT+TGG | - | tig0024333:39621-39640 | Msa1416170:intron | 35.0% |
| TTGATGTTAATGGGGCTAAT+TGG | - | tig0024333:39759-39778 | Msa1416170:intron | 35.0% | |
| TGATGTTAATGGGGCTAATT+GGG | - | tig0024333:39760-39779 | Msa1416170:intron | 35.0% | |
| ATCAATATGGAAAGGAAGGA+TGG | - | tig0024333:39851-39870 | Msa1416170:intron | 35.0% | |
| TCGTCACCATACTATTACAA+TGG | - | tig0024333:39893-39912 | Msa1416170:intron | 35.0% | |
| AATCTCTCAAATCTACCACA+TGG | - | tig0024333:39971-39990 | Msa1416170:intron | 35.0% | |
| !! | CCATTAAGTTGAAATCCATG+TGG | + | tig0024333:39989-40008 | None:intergenic | 35.0% |
| CCACATGGATTTCAACTTAA+TGG | - | tig0024333:39986-40005 | Msa1416170:intron | 35.0% | |
| CAAGCTCATATGTTCATGAA+TGG | - | tig0024333:40031-40050 | Msa1416170:intron | 35.0% | |
| CTCATATGTTCATGAATGGA+AGG | - | tig0024333:40035-40054 | Msa1416170:intron | 35.0% | |
| GCATAACACTTTGAACTTTC+AGG | - | tig0024333:40065-40084 | Msa1416170:intron | 35.0% | |
| AATTAATGATAGGGAGATGG+TGG | - | tig0024333:40475-40494 | Msa1416170:CDS | 35.0% | |
| TTCTATTTCCGACGAAATTG+AGG | + | tig0024333:40635-40654 | None:intergenic | 35.0% | |
| ! | TTTTTCTTTTACGCGAGAGT+TGG | - | tig0024333:40681-40700 | Msa1416170:CDS | 35.0% |
| !! | CAATATATGGTTGGTTCGAA+TGG | + | tig0024333:40747-40766 | None:intergenic | 35.0% |
| CATTCGAACCAACCATATAT+TGG | - | tig0024333:40745-40764 | Msa1416170:CDS | 35.0% | |
| AAGGACTACCAATATATGGT+TGG | + | tig0024333:40756-40775 | None:intergenic | 35.0% | |
| TTCACTGAGTATTACTAGGT+AGG | - | tig0024333:40978-40997 | Msa1416170:CDS | 35.0% | |
| TAGGTAGGTTAAGAATGTGA+GGG | - | tig0024333:40993-41012 | Msa1416170:CDS | 35.0% | |
| ! | AAGAATGTGAGGGACTTTTT+AGG | - | tig0024333:41003-41022 | Msa1416170:CDS | 35.0% |
| !!! | ACTTTTTAGGTGTGATCCTT+GGG | - | tig0024333:41016-41035 | Msa1416170:CDS | 35.0% |
| ! | GATTTTTGCTTCCTTTTGAG+TGG | + | tig0024333:41090-41109 | None:intergenic | 35.0% |
| TCTATCCATTCCATTACTGT+TGG | - | tig0024333:41145-41164 | Msa1416170:CDS | 35.0% | |
| AACAAGAGGATATGTCTATC+TGG | - | tig0024333:41171-41190 | Msa1416170:CDS | 35.0% | |
| ACAAGAGGATATGTCTATCT+GGG | - | tig0024333:41172-41191 | Msa1416170:CDS | 35.0% | |
| ! | ACTTCCGTGATTTCTCCTTT+TGG | + | tig0024333:39040-39059 | None:intergenic | 40.0% |
| ! | CTCTATGCTCCCAATTTTGT+AGG | - | tig0024333:39143-39162 | Msa1416170:CDS | 40.0% |
| !! | GATTTGCTGAACCTGAAACA+TGG | - | tig0024333:39171-39190 | Msa1416170:CDS | 40.0% |
| TTGTCTTTAGGCCATGTTTC+AGG | + | tig0024333:39185-39204 | None:intergenic | 40.0% | |
| ATGGCCTAAAGACAAAAGAG+AGG | - | tig0024333:39190-39209 | Msa1416170:intron | 40.0% | |
| ! | ATGGTGCGAGCTTTGTATAT+TGG | + | tig0024333:39690-39709 | None:intergenic | 40.0% |
| ! | TACCTATAATGGGGGTTATC+AGG | - | tig0024333:39805-39824 | Msa1416170:intron | 40.0% |
| AGGAATTAGTTCACCGCTAT+TGG | + | tig0024333:40722-40741 | None:intergenic | 40.0% | |
| !! | TATGGTTGGTTCGAATGGTA+AGG | + | tig0024333:40742-40761 | None:intergenic | 40.0% |
| CTAGGTAGGTTAAGAATGTG+AGG | - | tig0024333:40992-41011 | Msa1416170:CDS | 40.0% | |
| !!! | GACTTTTTAGGTGTGATCCT+TGG | - | tig0024333:41015-41034 | Msa1416170:CDS | 40.0% |
| TTGGGAATCTCACCTTAAGA+GGG | + | tig0024333:41052-41071 | None:intergenic | 40.0% | |
| TGGACACTTGGAAAAGTCTT+GGG | + | tig0024333:41070-41089 | None:intergenic | 40.0% | |
| TTTCCAAGTGTCCACTCAAA+AGG | - | tig0024333:41076-41095 | Msa1416170:CDS | 40.0% | |
| ATCCATTCCATTACTGTTGG+AGG | - | tig0024333:41148-41167 | Msa1416170:CDS | 40.0% | |
| ! | TTCCTCCAACAGTAATGGAA+TGG | + | tig0024333:41153-41172 | None:intergenic | 40.0% |
| TCTTGTTCCTCCAACAGTAA+TGG | + | tig0024333:41158-41177 | None:intergenic | 40.0% | |
| ATTACTGTTGGAGGAACAAG+AGG | - | tig0024333:41157-41176 | Msa1416170:CDS | 40.0% | |
| GGGTCGTGGAAGAATATCTA+TGG | - | tig0024333:39007-39026 | Msa1416170:CDS | 45.0% | |
| TGAAGTGGCCAAAACCCTAA+GGG | + | tig0024333:39632-39651 | None:intergenic | 45.0% | |
| TTGAAGTGGCCAAAACCCTA+AGG | + | tig0024333:39633-39652 | None:intergenic | 45.0% | |
| TATACAAAGCTCGCACCATG+TGG | - | tig0024333:39691-39710 | Msa1416170:intron | 45.0% | |
| GTCCTGATAACCCCCATTAT+AGG | + | tig0024333:39810-39829 | None:intergenic | 45.0% | |
| CGGGCTTCCCAAAATCAATA+TGG | - | tig0024333:39838-39857 | Msa1416170:intron | 45.0% | |
| AAGGAAGGATGGAGCTGAAA+AGG | - | tig0024333:39862-39881 | Msa1416170:intron | 45.0% | |
| ! | GGAAAGTGTGCAAGGCAATA+GGG | + | tig0024333:39943-39962 | None:intergenic | 45.0% |
| ! | CTGAAAAGGGAAAGTGTGCA+AGG | + | tig0024333:39951-39970 | None:intergenic | 45.0% |
| ATCGAGCTCATGACCAATAG+CGG | - | tig0024333:40706-40725 | Msa1416170:CDS | 45.0% | |
| TGGGAATCTCACCTTAAGAG+GGG | + | tig0024333:41051-41070 | None:intergenic | 45.0% | |
| CTTGGGAATCTCACCTTAAG+AGG | + | tig0024333:41053-41072 | None:intergenic | 45.0% | |
| GTGGACACTTGGAAAAGTCT+TGG | + | tig0024333:41071-41090 | None:intergenic | 45.0% | |
| !! | CTTCCTTTTGAGTGGACACT+TGG | + | tig0024333:41082-41101 | None:intergenic | 45.0% |
| TACTGCTACGCAACAAGTTC+TGG | + | tig0024333:41112-41131 | None:intergenic | 45.0% | |
| ! | GGATATGTCTATCTGGGATG+AGG | - | tig0024333:41178-41197 | Msa1416170:CDS | 45.0% |
| ! | GCTCCCAATTTTGTAGGTCG+TGG | - | tig0024333:39149-39168 | Msa1416170:CDS | 50.0% |
| GAAGTGGCCAAAACCCTAAG+GGG | + | tig0024333:39631-39650 | None:intergenic | 50.0% | |
| !! | AGGGTTTTGGCCACTTCAAC+CGG | - | tig0024333:39634-39653 | Msa1416170:intron | 50.0% |
| ! | GAAGGTTGAGAGCTTTGTCC+CGG | + | tig0024333:39656-39675 | None:intergenic | 50.0% |
| GGTTATCAGGACCGATGCTT+CGG | - | tig0024333:39818-39837 | Msa1416170:intron | 50.0% | |
| GTTATCAGGACCGATGCTTC+GGG | - | tig0024333:39819-39838 | Msa1416170:intron | 50.0% | |
| !! | TTTTGGGAAGCCCGAAGCAT+CGG | + | tig0024333:39832-39851 | None:intergenic | 50.0% |
| ! | GGGAAAGTGTGCAAGGCAAT+AGG | + | tig0024333:39944-39963 | None:intergenic | 50.0% |
| ! | ATCTGGGATGAGGAGATGCA+TGG | - | tig0024333:41188-41207 | Msa1416170:CDS | 50.0% |
| !! | GGGTTTTGGCCACTTCAACC+GGG | - | tig0024333:39635-39654 | Msa1416170:intron | 55.0% |
| ! | GAGCTTTGTCCCGGTTGAAG+TGG | + | tig0024333:39647-39666 | None:intergenic | 55.0% |
| CACCATGTGGAGTCTGAGGA+GGG | - | tig0024333:39704-39723 | Msa1416170:intron | 55.0% | |
| TACCCTCCTCAGACTCCACA+TGG | + | tig0024333:39709-39728 | None:intergenic | 55.0% | |
| TGGGGCTAATTGGGCCAATC+AGG | - | tig0024333:39769-39788 | Msa1416170:intron | 55.0% | |
| GGTGTCTGCTACCCCTCTTA+AGG | - | tig0024333:41037-41056 | Msa1416170:CDS | 55.0% | |
| CTCGCACCATGTGGAGTCTG+AGG | - | tig0024333:39700-39719 | Msa1416170:intron | 60.0% | |
| GCACCATGTGGAGTCTGAGG+AGG | - | tig0024333:39703-39722 | Msa1416170:intron | 60.0% | |
| AGAGGGGTAGCAGACACCCA+AGG | + | tig0024333:41035-41054 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024333 | gene | 39005 | 41217 | 39005 | ID=Msa1416170;Name=Msa1416170 |
| tig0024333 | mRNA | 39005 | 41217 | 39005 | ID=Msa1416170-mRNA-1;Parent=Msa1416170;Name=Msa1416170-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|0.5|1|1|2|0|415 |
| tig0024333 | exon | 40163 | 41217 | 40163 | ID=Msa1416170-mRNA-1:exon:22821;Parent=Msa1416170-mRNA-1 |
| tig0024333 | exon | 39005 | 39197 | 39005 | ID=Msa1416170-mRNA-1:exon:22820;Parent=Msa1416170-mRNA-1 |
| tig0024333 | CDS | 40163 | 41217 | 40163 | ID=Msa1416170-mRNA-1:cds;Parent=Msa1416170-mRNA-1 |
| tig0024333 | CDS | 39005 | 39197 | 39005 | ID=Msa1416170-mRNA-1:cds;Parent=Msa1416170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
