Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416980 | sp|Q8GRL4|HOX19_ORYSJ | 45.509 | 167 | 76 | 1 | 56 | 207 | 101 | 267 | 4.10e-40 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416980 | G7IIE0 | 97.209 | 215 | 6 | 0 | 1 | 215 | 1 | 215 | 1.18e-148 | 421 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1416980 | TF | HB-other |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416980 | MtrunA17_Chr2g0299031 | 97.209 | 215 | 6 | 0 | 1 | 215 | 1 | 215 | 2.28e-152 | 421 |
| Msa1416980 | MtrunA17_Chr8g0335131 | 60.177 | 113 | 45 | 0 | 82 | 194 | 146 | 258 | 1.44e-39 | 137 |
| Msa1416980 | MtrunA17_Chr5g0400781 | 57.937 | 126 | 48 | 2 | 72 | 197 | 117 | 237 | 1.80e-39 | 136 |
| Msa1416980 | MtrunA17_Chr4g0055851 | 43.750 | 176 | 99 | 0 | 37 | 212 | 75 | 250 | 1.90e-39 | 136 |
| Msa1416980 | MtrunA17_Chr5g0399491 | 55.932 | 118 | 52 | 0 | 82 | 199 | 136 | 253 | 3.40e-39 | 136 |
| Msa1416980 | MtrunA17_Chr4g0054421 | 61.739 | 115 | 41 | 2 | 82 | 195 | 127 | 239 | 1.59e-38 | 134 |
| Msa1416980 | MtrunA17_Chr7g0258831 | 57.983 | 119 | 49 | 1 | 77 | 195 | 155 | 272 | 4.04e-38 | 134 |
| Msa1416980 | MtrunA17_Chr1g0175651 | 57.724 | 123 | 43 | 2 | 77 | 195 | 149 | 266 | 6.25e-38 | 133 |
| Msa1416980 | MtrunA17_Chr2g0308611 | 60.000 | 115 | 43 | 2 | 82 | 195 | 200 | 312 | 1.38e-36 | 130 |
| Msa1416980 | MtrunA17_Chr1g0151971 | 49.032 | 155 | 75 | 3 | 49 | 199 | 94 | 248 | 1.41e-35 | 127 |
| Msa1416980 | MtrunA17_Chr4g0044091 | 50.847 | 118 | 53 | 1 | 82 | 194 | 65 | 182 | 6.37e-34 | 120 |
| Msa1416980 | MtrunA17_Chr4g0071411 | 41.346 | 208 | 102 | 5 | 11 | 201 | 7 | 211 | 7.21e-33 | 118 |
| Msa1416980 | MtrunA17_Chr3g0135331 | 55.556 | 126 | 53 | 2 | 71 | 195 | 133 | 256 | 5.81e-30 | 112 |
| Msa1416980 | MtrunA17_Chr5g0416391 | 37.273 | 110 | 66 | 1 | 60 | 169 | 58 | 164 | 3.63e-13 | 67.0 |
| Msa1416980 | MtrunA17_Chr7g0265521 | 32.667 | 150 | 91 | 4 | 27 | 169 | 4 | 150 | 1.87e-12 | 64.3 |
| Msa1416980 | MtrunA17_Chr1g0179581 | 43.373 | 83 | 47 | 0 | 82 | 164 | 28 | 110 | 2.10e-12 | 61.6 |
| Msa1416980 | MtrunA17_Chr7g0217111 | 36.667 | 120 | 70 | 2 | 56 | 171 | 56 | 173 | 2.26e-12 | 64.7 |
| Msa1416980 | MtrunA17_Chr6g0450991 | 42.045 | 88 | 51 | 0 | 82 | 169 | 67 | 154 | 3.00e-12 | 64.3 |
| Msa1416980 | MtrunA17_Chr5g0415941 | 40.000 | 95 | 50 | 1 | 81 | 168 | 86 | 180 | 5.03e-12 | 63.9 |
| Msa1416980 | MtrunA17_Chr8g0362151 | 36.697 | 109 | 65 | 2 | 60 | 168 | 59 | 163 | 7.46e-12 | 63.2 |
| Msa1416980 | MtrunA17_Chr3g0119291 | 42.105 | 95 | 48 | 1 | 82 | 169 | 59 | 153 | 1.07e-11 | 62.4 |
| Msa1416980 | MtrunA17_Chr8g0381741 | 40.351 | 114 | 60 | 3 | 76 | 181 | 48 | 161 | 3.47e-11 | 61.6 |
| Msa1416980 | MtrunA17_Chr8g0362751 | 41.053 | 95 | 49 | 1 | 81 | 168 | 88 | 182 | 4.54e-11 | 60.8 |
| Msa1416980 | MtrunA17_Chr4g0060031 | 40.909 | 88 | 52 | 0 | 82 | 169 | 95 | 182 | 5.42e-11 | 60.8 |
| Msa1416980 | MtrunA17_Chr3g0123691 | 36.441 | 118 | 65 | 3 | 63 | 173 | 43 | 157 | 8.93e-11 | 60.1 |
| Msa1416980 | MtrunA17_Chr6g0453021 | 42.045 | 88 | 51 | 0 | 82 | 169 | 96 | 183 | 9.04e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416980 | AT4G16780.1 | 47.742 | 155 | 81 | 0 | 55 | 209 | 102 | 256 | 1.14e-40 | 140 |
| Msa1416980 | AT4G17460.1 | 49.664 | 149 | 69 | 1 | 51 | 199 | 110 | 252 | 2.22e-40 | 139 |
| Msa1416980 | AT5G47370.1 | 56.780 | 118 | 51 | 0 | 82 | 199 | 130 | 247 | 9.53e-39 | 135 |
| Msa1416980 | AT3G60390.1 | 54.918 | 122 | 55 | 0 | 73 | 194 | 153 | 274 | 3.17e-38 | 134 |
| Msa1416980 | AT5G06710.1 | 55.645 | 124 | 54 | 1 | 72 | 195 | 180 | 302 | 1.25e-37 | 134 |
| Msa1416980 | AT2G44910.1 | 57.018 | 114 | 49 | 0 | 82 | 195 | 163 | 276 | 2.96e-37 | 132 |
| Msa1416980 | AT4G37790.1 | 58.772 | 114 | 46 | 1 | 82 | 195 | 126 | 238 | 5.69e-37 | 130 |
| Msa1416980 | AT2G22800.1 | 57.018 | 114 | 48 | 1 | 82 | 195 | 113 | 225 | 8.05e-36 | 127 |
| Msa1416980 | AT2G01430.1 | 54.386 | 114 | 49 | 1 | 82 | 195 | 139 | 249 | 9.66e-35 | 124 |
| Msa1416980 | AT1G70920.1 | 50.000 | 124 | 54 | 2 | 72 | 195 | 59 | 174 | 1.08e-28 | 107 |
| Msa1416980 | AT1G70920.2 | 50.000 | 124 | 54 | 2 | 72 | 195 | 29 | 144 | 1.42e-28 | 106 |
| Msa1416980 | AT5G06710.4 | 59.677 | 62 | 25 | 0 | 72 | 133 | 180 | 241 | 1.72e-16 | 76.3 |
| Msa1416980 | AT5G03790.1 | 42.574 | 101 | 58 | 0 | 70 | 170 | 65 | 165 | 1.19e-14 | 70.9 |
| Msa1416980 | AT2G01430.2 | 58.182 | 55 | 23 | 0 | 82 | 136 | 139 | 193 | 5.41e-14 | 68.6 |
| Msa1416980 | AT3G01220.1 | 32.738 | 168 | 101 | 3 | 52 | 212 | 57 | 219 | 3.57e-13 | 67.4 |
| Msa1416980 | AT4G36740.2 | 37.374 | 99 | 62 | 0 | 70 | 168 | 44 | 142 | 3.85e-12 | 63.5 |
| Msa1416980 | AT4G36740.1 | 37.374 | 99 | 62 | 0 | 70 | 168 | 43 | 141 | 4.07e-12 | 63.5 |
| Msa1416980 | AT3G01470.1 | 47.222 | 72 | 38 | 0 | 82 | 153 | 68 | 139 | 6.26e-12 | 63.5 |
| Msa1416980 | AT5G03790.2 | 41.053 | 95 | 56 | 0 | 70 | 164 | 65 | 159 | 8.09e-12 | 62.4 |
| Msa1416980 | AT2G18550.1 | 33.333 | 144 | 89 | 2 | 69 | 211 | 48 | 185 | 1.25e-11 | 62.0 |
| Msa1416980 | AT1G26960.1 | 37.500 | 104 | 62 | 1 | 66 | 169 | 58 | 158 | 1.53e-11 | 62.4 |
Find 37 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACCTTGCTCTTCTGTTC+TGG | 0.227517 | tig0024425:-31453 | None:intergenic |
| GTTCATCATGCAAGAAAATA+TGG | 0.268795 | tig0024425:+32268 | Msa1416980:CDS |
| GATGATTGAGTTGTGTTTGA+TGG | 0.272598 | tig0024425:-32222 | None:intergenic |
| TAGCCTTTAATCTAACTCTA+TGG | 0.303061 | tig0024425:-32334 | None:intergenic |
| AATCATCTAAAGCTGCAAAT+TGG | 0.315157 | tig0024425:+32238 | Msa1416980:CDS |
| CTTAATCTTAAACTTGGATT+AGG | 0.319965 | tig0024425:+30905 | Msa1416980:CDS |
| CCATTGATTTGAACCATGAT+AGG | 0.325695 | tig0024425:+30984 | Msa1416980:CDS |
| GCACCATAGAGTTAGATTAA+AGG | 0.328032 | tig0024425:+32331 | Msa1416980:CDS |
| GGTTGATTCAAAAGAAGAAT+TGG | 0.345182 | tig0024425:+30961 | Msa1416980:CDS |
| AACTAAGTGAGGAGAATCTT+AGG | 0.353207 | tig0024425:+32157 | Msa1416980:CDS |
| AGCAAAGACAGGTTGAAGTT+TGG | 0.373329 | tig0024425:+31428 | Msa1416980:CDS |
| AATAACAACATCCTCCTCAT+TGG | 0.419038 | tig0024425:-32295 | None:intergenic |
| TCAATTCATTTGCCCTATCA+TGG | 0.421387 | tig0024425:-30997 | None:intergenic |
| AATTGTGCTGCGACGCTTGA+AGG | 0.434813 | tig0024425:-31152 | None:intergenic |
| TTTCTTGCATGATGAACAAA+TGG | 0.440678 | tig0024425:-32262 | None:intergenic |
| ATAACAACATCCTCCTCATT+GGG | 0.441004 | tig0024425:-32294 | None:intergenic |
| TTGGATCTTAATCTTAAACT+TGG | 0.447542 | tig0024425:+30899 | Msa1416980:CDS |
| AAACAATGTGAACAAACCTT+TGG | 0.458446 | tig0024425:+30940 | Msa1416980:CDS |
| ACACCACCAATGTCAACAAC+GGG | 0.477693 | tig0024425:+31077 | Msa1416980:CDS |
| ATTGAATTTAAAGCAAAGAC+AGG | 0.478696 | tig0024425:+31417 | Msa1416980:CDS |
| CCTATCATGGTTCAAATCAA+TGG | 0.487751 | tig0024425:-30984 | None:intergenic |
| GGAGAATCTTAGGTTGAAGA+AGG | 0.518622 | tig0024425:+32167 | Msa1416980:CDS |
| GAACTGCGTGCATTAAAAGT+TGG | 0.525263 | tig0024425:+32198 | Msa1416980:CDS |
| CATTGATTTGAACCATGATA+GGG | 0.530963 | tig0024425:+30985 | Msa1416980:CDS |
| GCACCCGTTGTTGACATTGG+TGG | 0.553536 | tig0024425:-31080 | None:intergenic |
| TGAGCACCCGTTGTTGACAT+TGG | 0.559597 | tig0024425:-31083 | None:intergenic |
| AATCTAACTCTATGGTGCTG+TGG | 0.578396 | tig0024425:-32326 | None:intergenic |
| ACGGGTGCTCAAAGAAATTG+AGG | 0.587563 | tig0024425:+31095 | Msa1416980:CDS |
| TCATCACATGGCATGCACGT+TGG | 0.602607 | tig0024425:+30880 | Msa1416980:CDS |
| GACACCACCAATGTCAACAA+CGG | 0.607067 | tig0024425:+31076 | Msa1416980:CDS |
| GAAAATATGGAAGCCCAATG+AGG | 0.640653 | tig0024425:+32281 | Msa1416980:CDS |
| GGTTCCAGAACAGAAGAGCA+AGG | 0.646687 | tig0024425:+31449 | Msa1416980:CDS |
| AATATGGAAGCCCAATGAGG+AGG | 0.651470 | tig0024425:+32284 | Msa1416980:CDS |
| ATGATCTTGATCATCATCCA+TGG | 0.675243 | tig0024425:-30861 | None:intergenic |
| ATGTCATGAGAAACTAAGTG+AGG | 0.678157 | tig0024425:+32146 | Msa1416980:CDS |
| TGATGATCAAGATCATCACA+TGG | 0.696569 | tig0024425:+30868 | Msa1416980:CDS |
| GACTAAGCTGAAACAAACAG+AGG | 0.748545 | tig0024425:+32101 | Msa1416980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTAATTATTAATTTTA+TGG | + | tig0024425:31241-31260 | Msa1416980:intron | 0.0% |
| !!! | TTTATTAATTATTAATTTTA+TGG | + | tig0024425:31241-31260 | Msa1416980:intron | 0.0% |
| !!! | TTTTCATTTATCAAAATTTA+AGG | + | tig0024425:31334-31353 | Msa1416980:intron | 10.0% |
| !! | TTTCATTTATCAAAATTTAA+GGG | + | tig0024425:31335-31354 | Msa1416980:intron | 10.0% |
| !!! | TTTTATTATTTTTTCTTTCA+TGG | + | tig0024425:31514-31533 | Msa1416980:intron | 10.0% |
| !!! | TTTTCATTTATCAAAATTTA+AGG | + | tig0024425:31334-31353 | Msa1416980:intron | 10.0% |
| !! | TTTCATTTATCAAAATTTAA+GGG | + | tig0024425:31335-31354 | Msa1416980:intron | 10.0% |
| !!! | TTTTATTATTTTTTCTTTCA+TGG | + | tig0024425:31514-31533 | Msa1416980:intron | 10.0% |
| !! | ATTCAAAGAGTAATATATTA+CGG | - | tig0024425:31182-31201 | None:intergenic | 15.0% |
| !!! | TTTCAAAAAATAATTTGTGT+TGG | + | tig0024425:31689-31708 | Msa1416980:intron | 15.0% |
| !! | ATAGTCAACAAATAATAAAT+TGG | - | tig0024425:31723-31742 | None:intergenic | 15.0% |
| !! | ATTCAAAGAGTAATATATTA+CGG | - | tig0024425:31182-31201 | None:intergenic | 15.0% |
| !!! | TTTCAAAAAATAATTTGTGT+TGG | + | tig0024425:31689-31708 | Msa1416980:intron | 15.0% |
| !! | ATAGTCAACAAATAATAAAT+TGG | - | tig0024425:31723-31742 | None:intergenic | 15.0% |
| !!! | GGAATTGATTTTTTTTGTTT+CGG | + | tig0024425:31356-31375 | Msa1416980:intron | 20.0% |
| !!! | TATGAATCATTTGGTTTAAT+TGG | + | tig0024425:31472-31491 | Msa1416980:intron | 20.0% |
| !!! | ATGAATCATTTGGTTTAATT+GGG | + | tig0024425:31473-31492 | Msa1416980:intron | 20.0% |
| !!! | ATGAAATTTTATAACTTGAG+TGG | - | tig0024425:31828-31847 | None:intergenic | 20.0% |
| !!! | AATTATACAATTGACTTTTC+AGG | + | tig0024425:32079-32098 | Msa1416980:intron | 20.0% |
| !!! | GGAATTGATTTTTTTTGTTT+CGG | + | tig0024425:31356-31375 | Msa1416980:intron | 20.0% |
| !!! | TATGAATCATTTGGTTTAAT+TGG | + | tig0024425:31472-31491 | Msa1416980:intron | 20.0% |
| !!! | ATGAATCATTTGGTTTAATT+GGG | + | tig0024425:31473-31492 | Msa1416980:intron | 20.0% |
| !!! | ATGAAATTTTATAACTTGAG+TGG | - | tig0024425:31828-31847 | None:intergenic | 20.0% |
| !!! | AATTATACAATTGACTTTTC+AGG | + | tig0024425:32079-32098 | Msa1416980:intron | 20.0% |
| ! | TTGGATCTTAATCTTAAACT+TGG | + | tig0024425:30899-30918 | Msa1416980:CDS | 25.0% |
| ! | CTTAATCTTAAACTTGGATT+AGG | + | tig0024425:30905-30924 | Msa1416980:CDS | 25.0% |
| !! | TTATGGAAGCTAATTTTGTA+TGG | + | tig0024425:31258-31277 | Msa1416980:intron | 25.0% |
| !! | ATTGAATTTAAAGCAAAGAC+AGG | + | tig0024425:31417-31436 | Msa1416980:CDS | 25.0% |
| ! | TTGACAGTTATATGAAATAG+AGG | + | tig0024425:31957-31976 | Msa1416980:intron | 25.0% |
| ! | TTGGATCTTAATCTTAAACT+TGG | + | tig0024425:30899-30918 | Msa1416980:CDS | 25.0% |
| ! | CTTAATCTTAAACTTGGATT+AGG | + | tig0024425:30905-30924 | Msa1416980:CDS | 25.0% |
| !! | TTATGGAAGCTAATTTTGTA+TGG | + | tig0024425:31258-31277 | Msa1416980:intron | 25.0% |
| !! | ATTGAATTTAAAGCAAAGAC+AGG | + | tig0024425:31417-31436 | Msa1416980:CDS | 25.0% |
| ! | TTGACAGTTATATGAAATAG+AGG | + | tig0024425:31957-31976 | Msa1416980:intron | 25.0% |
| AAACAATGTGAACAAACCTT+TGG | + | tig0024425:30940-30959 | Msa1416980:CDS | 30.0% | |
| ! | TCTTCTTTTGAATCAACCAA+AGG | - | tig0024425:30959-30978 | None:intergenic | 30.0% |
| ! | GGTTGATTCAAAAGAAGAAT+TGG | + | tig0024425:30961-30980 | Msa1416980:CDS | 30.0% |
| !! | CATTGATTTGAACCATGATA+GGG | + | tig0024425:30985-31004 | Msa1416980:CDS | 30.0% |
| ! | AATCATCTAAAGCTGCAAAT+TGG | + | tig0024425:32238-32257 | Msa1416980:CDS | 30.0% |
| TTTCTTGCATGATGAACAAA+TGG | - | tig0024425:32265-32284 | None:intergenic | 30.0% | |
| GTTCATCATGCAAGAAAATA+TGG | + | tig0024425:32268-32287 | Msa1416980:CDS | 30.0% | |
| AAACAATGTGAACAAACCTT+TGG | + | tig0024425:30940-30959 | Msa1416980:CDS | 30.0% | |
| ! | TCTTCTTTTGAATCAACCAA+AGG | - | tig0024425:30959-30978 | None:intergenic | 30.0% |
| ! | GGTTGATTCAAAAGAAGAAT+TGG | + | tig0024425:30961-30980 | Msa1416980:CDS | 30.0% |
| !! | CATTGATTTGAACCATGATA+GGG | + | tig0024425:30985-31004 | Msa1416980:CDS | 30.0% |
| ! | AATCATCTAAAGCTGCAAAT+TGG | + | tig0024425:32238-32257 | Msa1416980:CDS | 30.0% |
| TTTCTTGCATGATGAACAAA+TGG | - | tig0024425:32265-32284 | None:intergenic | 30.0% | |
| GTTCATCATGCAAGAAAATA+TGG | + | tig0024425:32268-32287 | Msa1416980:CDS | 30.0% | |
| TGATGATCAAGATCATCACA+TGG | + | tig0024425:30868-30887 | Msa1416980:CDS | 35.0% | |
| CCTATCATGGTTCAAATCAA+TGG | - | tig0024425:30987-31006 | None:intergenic | 35.0% | |
| !! | CCATTGATTTGAACCATGAT+AGG | + | tig0024425:30984-31003 | Msa1416980:CDS | 35.0% |
| TCAATTCATTTGCCCTATCA+TGG | - | tig0024425:31000-31019 | None:intergenic | 35.0% | |
| ! | TTTGTTTCGGTTTTACATGC+AGG | + | tig0024425:31369-31388 | Msa1416980:intron | 35.0% |
| TTTACATGCAGGCTCAAAAA+CGG | + | tig0024425:31380-31399 | Msa1416980:intron | 35.0% | |
| AGAGCAAGGTATGAATCATT+TGG | + | tig0024425:31463-31482 | Msa1416980:intron | 35.0% | |
| ! | ACTTTTCACTTCTGATCACT+TGG | + | tig0024425:31580-31599 | Msa1416980:intron | 35.0% |
| TGATCACTTGGATTTCTTCT+TGG | + | tig0024425:31592-31611 | Msa1416980:intron | 35.0% | |
| TAGTAGTCAGGGTAAAATGA+TGG | - | tig0024425:31642-31661 | None:intergenic | 35.0% | |
| AATTTCTGACGTAGTAGTCA+GGG | - | tig0024425:31653-31672 | None:intergenic | 35.0% | |
| GACTGTTGAACACTACAATT+TGG | + | tig0024425:32004-32023 | Msa1416980:intron | 35.0% | |
| ATGTCATGAGAAACTAAGTG+AGG | + | tig0024425:32146-32165 | Msa1416980:CDS | 35.0% | |
| AACTAAGTGAGGAGAATCTT+AGG | + | tig0024425:32157-32176 | Msa1416980:CDS | 35.0% | |
| ! | GATGATTGAGTTGTGTTTGA+TGG | - | tig0024425:32225-32244 | None:intergenic | 35.0% |
| ATAACAACATCCTCCTCATT+GGG | - | tig0024425:32297-32316 | None:intergenic | 35.0% | |
| AATAACAACATCCTCCTCAT+TGG | - | tig0024425:32298-32317 | None:intergenic | 35.0% | |
| TGATGATCAAGATCATCACA+TGG | + | tig0024425:30868-30887 | Msa1416980:CDS | 35.0% | |
| CCTATCATGGTTCAAATCAA+TGG | - | tig0024425:30987-31006 | None:intergenic | 35.0% | |
| !! | CCATTGATTTGAACCATGAT+AGG | + | tig0024425:30984-31003 | Msa1416980:CDS | 35.0% |
| TCAATTCATTTGCCCTATCA+TGG | - | tig0024425:31000-31019 | None:intergenic | 35.0% | |
| ! | TTTGTTTCGGTTTTACATGC+AGG | + | tig0024425:31369-31388 | Msa1416980:intron | 35.0% |
| TTTACATGCAGGCTCAAAAA+CGG | + | tig0024425:31380-31399 | Msa1416980:intron | 35.0% | |
| AGAGCAAGGTATGAATCATT+TGG | + | tig0024425:31463-31482 | Msa1416980:intron | 35.0% | |
| ! | ACTTTTCACTTCTGATCACT+TGG | + | tig0024425:31580-31599 | Msa1416980:intron | 35.0% |
| TGATCACTTGGATTTCTTCT+TGG | + | tig0024425:31592-31611 | Msa1416980:intron | 35.0% | |
| TAGTAGTCAGGGTAAAATGA+TGG | - | tig0024425:31642-31661 | None:intergenic | 35.0% | |
| AATTTCTGACGTAGTAGTCA+GGG | - | tig0024425:31653-31672 | None:intergenic | 35.0% | |
| GACTGTTGAACACTACAATT+TGG | + | tig0024425:32004-32023 | Msa1416980:intron | 35.0% | |
| ATGTCATGAGAAACTAAGTG+AGG | + | tig0024425:32146-32165 | Msa1416980:CDS | 35.0% | |
| AACTAAGTGAGGAGAATCTT+AGG | + | tig0024425:32157-32176 | Msa1416980:CDS | 35.0% | |
| ! | GATGATTGAGTTGTGTTTGA+TGG | - | tig0024425:32225-32244 | None:intergenic | 35.0% |
| ATAACAACATCCTCCTCATT+GGG | - | tig0024425:32297-32316 | None:intergenic | 35.0% | |
| AATAACAACATCCTCCTCAT+TGG | - | tig0024425:32298-32317 | None:intergenic | 35.0% | |
| !!! | CTTGAAGGCATTTTCAAGCT+TGG | - | tig0024425:31140-31159 | None:intergenic | 40.0% |
| TTACATGCAGGCTCAAAAAC+GGG | + | tig0024425:31381-31400 | Msa1416980:intron | 40.0% | |
| ! | AGCAAAGACAGGTTGAAGTT+TGG | + | tig0024425:31428-31447 | Msa1416980:CDS | 40.0% |
| GAATTTCTGACGTAGTAGTC+AGG | - | tig0024425:31654-31673 | None:intergenic | 40.0% | |
| GACTAAGCTGAAACAAACAG+AGG | + | tig0024425:32101-32120 | Msa1416980:CDS | 40.0% | |
| !! | GGAGAATCTTAGGTTGAAGA+AGG | + | tig0024425:32167-32186 | Msa1416980:CDS | 40.0% |
| GAACTGCGTGCATTAAAAGT+TGG | + | tig0024425:32198-32217 | Msa1416980:CDS | 40.0% | |
| GAAAATATGGAAGCCCAATG+AGG | + | tig0024425:32281-32300 | Msa1416980:CDS | 40.0% | |
| ! | AATCTAACTCTATGGTGCTG+TGG | - | tig0024425:32329-32348 | None:intergenic | 40.0% |
| !!! | CTTGAAGGCATTTTCAAGCT+TGG | - | tig0024425:31140-31159 | None:intergenic | 40.0% |
| TTACATGCAGGCTCAAAAAC+GGG | + | tig0024425:31381-31400 | Msa1416980:intron | 40.0% | |
| ! | AGCAAAGACAGGTTGAAGTT+TGG | + | tig0024425:31428-31447 | Msa1416980:CDS | 40.0% |
| GAATTTCTGACGTAGTAGTC+AGG | - | tig0024425:31654-31673 | None:intergenic | 40.0% | |
| GACTAAGCTGAAACAAACAG+AGG | + | tig0024425:32101-32120 | Msa1416980:CDS | 40.0% | |
| !! | GGAGAATCTTAGGTTGAAGA+AGG | + | tig0024425:32167-32186 | Msa1416980:CDS | 40.0% |
| GAACTGCGTGCATTAAAAGT+TGG | + | tig0024425:32198-32217 | Msa1416980:CDS | 40.0% | |
| GAAAATATGGAAGCCCAATG+AGG | + | tig0024425:32281-32300 | Msa1416980:CDS | 40.0% | |
| ! | AATCTAACTCTATGGTGCTG+TGG | - | tig0024425:32329-32348 | None:intergenic | 40.0% |
| GACACCACCAATGTCAACAA+CGG | + | tig0024425:31076-31095 | Msa1416980:CDS | 45.0% | |
| ACACCACCAATGTCAACAAC+GGG | + | tig0024425:31077-31096 | Msa1416980:CDS | 45.0% | |
| ACGGGTGCTCAAAGAAATTG+AGG | + | tig0024425:31095-31114 | Msa1416980:CDS | 45.0% | |
| CATACCTTGCTCTTCTGTTC+TGG | - | tig0024425:31456-31475 | None:intergenic | 45.0% | |
| AATATGGAAGCCCAATGAGG+AGG | + | tig0024425:32284-32303 | Msa1416980:CDS | 45.0% | |
| GACACCACCAATGTCAACAA+CGG | + | tig0024425:31076-31095 | Msa1416980:CDS | 45.0% | |
| ACACCACCAATGTCAACAAC+GGG | + | tig0024425:31077-31096 | Msa1416980:CDS | 45.0% | |
| ACGGGTGCTCAAAGAAATTG+AGG | + | tig0024425:31095-31114 | Msa1416980:CDS | 45.0% | |
| CATACCTTGCTCTTCTGTTC+TGG | - | tig0024425:31456-31475 | None:intergenic | 45.0% | |
| AATATGGAAGCCCAATGAGG+AGG | + | tig0024425:32284-32303 | Msa1416980:CDS | 45.0% | |
| TCATCACATGGCATGCACGT+TGG | + | tig0024425:30880-30899 | Msa1416980:CDS | 50.0% | |
| TGAGCACCCGTTGTTGACAT+TGG | - | tig0024425:31086-31105 | None:intergenic | 50.0% | |
| AATTGTGCTGCGACGCTTGA+AGG | - | tig0024425:31155-31174 | None:intergenic | 50.0% | |
| ! | TCAAAAACGGGCACTTGCTG+AGG | + | tig0024425:31393-31412 | Msa1416980:CDS | 50.0% |
| GGTTCCAGAACAGAAGAGCA+AGG | + | tig0024425:31449-31468 | Msa1416980:CDS | 50.0% | |
| TCATCACATGGCATGCACGT+TGG | + | tig0024425:30880-30899 | Msa1416980:CDS | 50.0% | |
| TGAGCACCCGTTGTTGACAT+TGG | - | tig0024425:31086-31105 | None:intergenic | 50.0% | |
| AATTGTGCTGCGACGCTTGA+AGG | - | tig0024425:31155-31174 | None:intergenic | 50.0% | |
| ! | TCAAAAACGGGCACTTGCTG+AGG | + | tig0024425:31393-31412 | Msa1416980:CDS | 50.0% |
| GGTTCCAGAACAGAAGAGCA+AGG | + | tig0024425:31449-31468 | Msa1416980:CDS | 50.0% | |
| GCACCCGTTGTTGACATTGG+TGG | - | tig0024425:31083-31102 | None:intergenic | 55.0% | |
| GCACCCGTTGTTGACATTGG+TGG | - | tig0024425:31083-31102 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024425 | gene | 30863 | 32350 | 30863 | ID=Msa1416980;Name=Msa1416980 |
| tig0024425 | mRNA | 30863 | 32350 | 30863 | ID=Msa1416980-mRNA-1;Parent=Msa1416980;Name=Msa1416980-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|215 |
| tig0024425 | exon | 30863 | 31180 | 30863 | ID=Msa1416980-mRNA-1:exon:23132;Parent=Msa1416980-mRNA-1 |
| tig0024425 | exon | 31391 | 31470 | 31391 | ID=Msa1416980-mRNA-1:exon:23133;Parent=Msa1416980-mRNA-1 |
| tig0024425 | exon | 32101 | 32350 | 32101 | ID=Msa1416980-mRNA-1:exon:23134;Parent=Msa1416980-mRNA-1 |
| tig0024425 | CDS | 30863 | 31180 | 30863 | ID=Msa1416980-mRNA-1:cds;Parent=Msa1416980-mRNA-1 |
| tig0024425 | CDS | 31391 | 31470 | 31391 | ID=Msa1416980-mRNA-1:cds;Parent=Msa1416980-mRNA-1 |
| tig0024425 | CDS | 32101 | 32350 | 32101 | ID=Msa1416980-mRNA-1:cds;Parent=Msa1416980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
