Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418130 | sp|Q568K5|NAA40_DANRE | 30.417 | 240 | 128 | 5 | 15 | 242 | 4 | 216 | 1.07e-20 | 90.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418130 | A0A396HG85 | 86.434 | 258 | 24 | 2 | 13 | 260 | 7 | 263 | 4.18e-158 | 449 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1418130 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418130 | MtrunA17_Chr6g0479551 | 86.434 | 258 | 24 | 2 | 13 | 260 | 7 | 263 | 8.05e-162 | 449 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418130 | AT1G18335.3 | 45.455 | 264 | 125 | 3 | 3 | 254 | 6 | 262 | 2.83e-65 | 205 |
| Msa1418130 | AT1G18335.2 | 45.455 | 264 | 125 | 3 | 3 | 254 | 6 | 262 | 2.83e-65 | 205 |
| Msa1418130 | AT1G18335.1 | 45.627 | 263 | 124 | 3 | 3 | 253 | 6 | 261 | 7.16e-65 | 203 |
Find 63 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTCGAAGCGGCGATAAA+TGG | 0.157325 | tig0024536:-46709 | None:intergenic |
| CTCTGTATATATTGTTTAAC+AGG | 0.263897 | tig0024536:-48259 | None:intergenic |
| CTTAACATGGAAGGGCCTTA+TGG | 0.267675 | tig0024536:+49095 | Msa1418130:CDS |
| CAAAGCAGCTTATAGCAAAA+AGG | 0.330846 | tig0024536:+46668 | Msa1418130:CDS |
| TGTACATCACCGCTTTGTTT+TGG | 0.371460 | tig0024536:+49292 | Msa1418130:CDS |
| TTAACATGGAAGGGCCTTAT+GGG | 0.371949 | tig0024536:+49096 | Msa1418130:CDS |
| AGCATCTCGGAGTACATTGC+TGG | 0.384422 | tig0024536:-46467 | None:intergenic |
| GGCGTTGTTGTTTCTTGCAT+TGG | 0.387164 | tig0024536:-46507 | None:intergenic |
| CACAAATATATAGAGTGCTT+CGG | 0.393426 | tig0024536:-49168 | None:intergenic |
| TCTTGCCACTCGGCCCCATA+AGG | 0.397655 | tig0024536:-49110 | None:intergenic |
| ATTTCGAAGCGGCGATAAAT+GGG | 0.401809 | tig0024536:-46708 | None:intergenic |
| TGTGTCCAGGGGAAAGGGTT+GGG | 0.407882 | tig0024536:+49362 | Msa1418130:CDS |
| TATCGCCGCTTCGAAATTAA+CGG | 0.410757 | tig0024536:+46714 | Msa1418130:CDS |
| CATTGGTTCCACGGTGAGGT+TGG | 0.447704 | tig0024536:-46490 | None:intergenic |
| AAAGGTGAAGCGTATAGAAA+TGG | 0.455948 | tig0024536:+49139 | Msa1418130:CDS |
| GAGCCTTGTGTCCAGGGGAA+AGG | 0.462571 | tig0024536:+49356 | Msa1418130:CDS |
| ACAGCTCGAGCCTTGTGTCC+AGG | 0.462978 | tig0024536:+49349 | Msa1418130:CDS |
| TGCTTTGATGAGTTGTTCAT+TGG | 0.464316 | tig0024536:-46652 | None:intergenic |
| TCTTCTTGACGACTAGTTGA+AGG | 0.475356 | tig0024536:-49248 | None:intergenic |
| GCTTTCCCAACCCTTTCCCC+TGG | 0.475612 | tig0024536:-49367 | None:intergenic |
| ATATATACAGAGACTTCTTA+AGG | 0.487032 | tig0024536:+48270 | Msa1418130:CDS |
| AGCCTTGTGTCCAGGGGAAA+GGG | 0.487229 | tig0024536:+49357 | Msa1418130:CDS |
| TATTGAGCTTATCGCCCAAA+AGG | 0.500241 | tig0024536:+49403 | Msa1418130:CDS |
| AACCCTTTCCCCTGGACACA+AGG | 0.506317 | tig0024536:-49359 | None:intergenic |
| ACAAATATATAGAGTGCTTC+GGG | 0.510555 | tig0024536:-49167 | None:intergenic |
| CTCACAGTGTGTCTAAAGTC+AGG | 0.522117 | tig0024536:+47823 | Msa1418130:CDS |
| CAGCTCGAGCCTTGTGTCCA+GGG | 0.526439 | tig0024536:+49350 | Msa1418130:CDS |
| ATCTACAGCTTAACATGGAA+GGG | 0.529467 | tig0024536:+49087 | Msa1418130:intron |
| TGTTTCTTGCATTGGTTCCA+CGG | 0.532357 | tig0024536:-46499 | None:intergenic |
| GAAGATAGTGGTCCCATGGT+TGG | 0.539202 | tig0024536:+49266 | Msa1418130:CDS |
| TTGTGTCCAGGGGAAAGGGT+TGG | 0.541294 | tig0024536:+49361 | Msa1418130:CDS |
| ACTCTATATATTTGTGCATG+AGG | 0.543039 | tig0024536:+49175 | Msa1418130:CDS |
| AATCTACAGCTTAACATGGA+AGG | 0.544882 | tig0024536:+49086 | Msa1418130:intron |
| AGGGTTGGGAAAGCTTCTAA+TGG | 0.545813 | tig0024536:+49376 | Msa1418130:CDS |
| CCTTCTTCTCTCTGTAACGA+CGG | 0.548584 | tig0024536:-46528 | None:intergenic |
| TTTCAGTTCTCAGATGCAGA+TGG | 0.553167 | tig0024536:+50510 | Msa1418130:intron |
| TATATATTGTTTAACAGGAG+AGG | 0.556533 | tig0024536:-48254 | None:intergenic |
| TGTTGTGCTAACTGTTCAAA+AGG | 0.560279 | tig0024536:+49689 | Msa1418130:CDS |
| AGGGTCTTCCTCAGTGAACA+AGG | 0.564269 | tig0024536:-49228 | None:intergenic |
| CGAGTGGCAAGAGGAAGAAA+AGG | 0.565863 | tig0024536:+49121 | Msa1418130:CDS |
| CAATCTAATGGTGCAGTGAG+TGG | 0.575801 | tig0024536:-50597 | None:intergenic |
| CTTGCATTGGTTCCACGGTG+AGG | 0.579848 | tig0024536:-46494 | None:intergenic |
| CCGTCGTTACAGAGAGAAGA+AGG | 0.583284 | tig0024536:+46528 | Msa1418130:CDS |
| CTTCTTGACGACTAGTTGAA+GGG | 0.589404 | tig0024536:-49247 | None:intergenic |
| ACTAGTCGTCAAGAAGATAG+TGG | 0.589965 | tig0024536:+49254 | Msa1418130:CDS |
| AGTGTGTCTAAAGTCAGGCC+AGG | 0.590403 | tig0024536:+47828 | Msa1418130:CDS |
| ACGGTGAGGTTGGAGCATCT+CGG | 0.602451 | tig0024536:-46480 | None:intergenic |
| TTATGGGGCCGAGTGGCAAG+AGG | 0.603412 | tig0024536:+49112 | Msa1418130:CDS |
| ATATTTACACGAGTAAACTA+AGG | 0.608608 | tig0024536:+49730 | Msa1418130:CDS |
| TCAAGAAGATAGTGGTCCCA+TGG | 0.611489 | tig0024536:+49262 | Msa1418130:CDS |
| AGCTCGAGCCTTGTGTCCAG+GGG | 0.613488 | tig0024536:+49351 | Msa1418130:CDS |
| TGATGTACAAATCCAACCAT+GGG | 0.615610 | tig0024536:-49278 | None:intergenic |
| AGTTCATACACATAAAGTAC+CGG | 0.630714 | tig0024536:-49326 | None:intergenic |
| AAGGGCCTTATGGGGCCGAG+TGG | 0.646707 | tig0024536:+49105 | Msa1418130:CDS |
| GTGATGTACAAATCCAACCA+TGG | 0.648054 | tig0024536:-49279 | None:intergenic |
| TAACATGGAAGGGCCTTATG+GGG | 0.649341 | tig0024536:+49097 | Msa1418130:CDS |
| TCTAAATCTACAGCTTAACA+TGG | 0.653637 | tig0024536:+49082 | Msa1418130:intron |
| GGTTACCGTTAATTTCGAAG+CGG | 0.692033 | tig0024536:-46719 | None:intergenic |
| GATAAATGGGAAAAGAAGCG+AGG | 0.710792 | tig0024536:-46695 | None:intergenic |
| CCTCTTCTTCCAAAACAAAG+CGG | 0.723548 | tig0024536:-49301 | None:intergenic |
| GAGATGCTCCAACCTCACCG+TGG | 0.736931 | tig0024536:+46482 | Msa1418130:CDS |
| CTGACTTTAGACACACTGTG+AGG | 0.741228 | tig0024536:-47822 | None:intergenic |
| GAAGACAACCTTGTTCACTG+AGG | 0.772449 | tig0024536:+49220 | Msa1418130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATTTCAACATAATTA+TGG | + | tig0024536:47716-47735 | Msa1418130:intron | 10.0% |
| !! | TCTACTAAAAATAAAAAAAT+AGG | + | tig0024536:48163-48182 | Msa1418130:intron | 10.0% |
| !! | CTACTAAAAATAAAAAAATA+GGG | + | tig0024536:48164-48183 | Msa1418130:intron | 10.0% |
| !! | GAAATACAATTAAATTAATA+AGG | - | tig0024536:49877-49896 | None:intergenic | 10.0% |
| !!! | AAAAATATTTGATAACTGAT+AGG | + | tig0024536:47086-47105 | Msa1418130:intron | 15.0% |
| !!! | AAAATATTTGATAACTGATA+GGG | + | tig0024536:47087-47106 | Msa1418130:intron | 15.0% |
| !!! | TTTTTTCAATTAAGATAATG+AGG | + | tig0024536:47271-47290 | Msa1418130:intron | 15.0% |
| !!! | TTTTTCAATTAAGATAATGA+GGG | + | tig0024536:47272-47291 | Msa1418130:intron | 15.0% |
| !! | TGATAGTATAAACAAAAATA+AGG | - | tig0024536:48973-48992 | None:intergenic | 15.0% |
| !! | TTGTTTATACTATCATAAAT+CGG | + | tig0024536:48978-48997 | Msa1418130:intron | 15.0% |
| !! | CATATCATTAACATAAAAAA+GGG | - | tig0024536:49014-49033 | None:intergenic | 15.0% |
| !! | TGTATTAGACTTATATATAA+GGG | + | tig0024536:50017-50036 | Msa1418130:intron | 15.0% |
| !! | ATTCTCATAATAAAAAGTTA+AGG | + | tig0024536:50211-50230 | Msa1418130:intron | 15.0% |
| !! | TTCATAATTCTCATAATATT+TGG | + | tig0024536:50293-50312 | Msa1418130:intron | 15.0% |
| !!! | TTTTTTCATAAGATATCATG+AGG | + | tig0024536:46913-46932 | Msa1418130:intron | 20.0% |
| !!! | AAATATTTGATAACTGATAG+GGG | + | tig0024536:47088-47107 | Msa1418130:intron | 20.0% |
| !!! | GTTATAGTCTTATAAACTAT+AGG | - | tig0024536:47691-47710 | None:intergenic | 20.0% |
| !!! | TTTATCTCATTTTCAACAAA+TGG | - | tig0024536:47995-48014 | None:intergenic | 20.0% |
| !! | ATTTGTTTATACTATCATGA+GGG | + | tig0024536:48888-48907 | Msa1418130:intron | 20.0% |
| !! | TAGTATAAACAAAAATAAGG+CGG | - | tig0024536:48970-48989 | None:intergenic | 20.0% |
| !! | GCATATCATTAACATAAAAA+AGG | - | tig0024536:49015-49034 | None:intergenic | 20.0% |
| !!! | CAATTTATTGATTTATGTAC+AGG | + | tig0024536:49594-49613 | Msa1418130:intron | 20.0% |
| !! | TATCAAAGATCATATTAGAT+GGG | - | tig0024536:49634-49653 | None:intergenic | 20.0% |
| !! | ATATCAAAGATCATATTAGA+TGG | - | tig0024536:49635-49654 | None:intergenic | 20.0% |
| !! | ACAGATAAAAAATTCAATGA+TGG | - | tig0024536:49777-49796 | None:intergenic | 20.0% |
| !! | GTGTATTAGACTTATATATA+AGG | + | tig0024536:50016-50035 | Msa1418130:intron | 20.0% |
| !! | ATGAAAGTAGAAAATAGAAA+CGG | - | tig0024536:50256-50275 | None:intergenic | 20.0% |
| !! | GAAAAATCTAGAAAGTAATT+AGG | - | tig0024536:50350-50369 | None:intergenic | 20.0% |
| ! | GCATTTAACAAAATCAAAAG+CGG | - | tig0024536:46743-46762 | None:intergenic | 25.0% |
| !! | CTTATTGAATTTGAAGTGTT+TGG | + | tig0024536:47139-47158 | Msa1418130:intron | 25.0% |
| ! | GAATGTAATTAGTACAAGTT+GGG | - | tig0024536:47639-47658 | None:intergenic | 25.0% |
| ! | CTAATTACATTCCTAATTAC+AGG | + | tig0024536:47647-47666 | Msa1418130:intron | 25.0% |
| ! | ATGTATTGTATCAAACAATG+AGG | - | tig0024536:47950-47969 | None:intergenic | 25.0% |
| ! | GATTACTCACTTTATTACAT+AGG | + | tig0024536:48058-48077 | Msa1418130:intron | 25.0% |
| ! | TATATATTGTTTAACAGGAG+AGG | - | tig0024536:48257-48276 | None:intergenic | 25.0% |
| ! | CTCTGTATATATTGTTTAAC+AGG | - | tig0024536:48262-48281 | None:intergenic | 25.0% |
| ! | ATATATACAGAGACTTCTTA+AGG | + | tig0024536:48270-48289 | Msa1418130:CDS | 25.0% |
| ! | TAAGTAACTCTAGTATTGTT+TGG | - | tig0024536:48338-48357 | None:intergenic | 25.0% |
| !! | ACAATTATACTTGTTGAGTA+TGG | + | tig0024536:48387-48406 | Msa1418130:intron | 25.0% |
| !! | TTACAATGAAGATGCATTTT+TGG | - | tig0024536:48815-48834 | None:intergenic | 25.0% |
| ! | CATTTGTTTATACTATCATG+AGG | + | tig0024536:48887-48906 | Msa1418130:intron | 25.0% |
| ! | TTTCAATGAATAAGCTAACA+CGG | - | tig0024536:49038-49057 | None:intergenic | 25.0% |
| !! | TGTTAGCTTATTCATTGAAA+TGG | + | tig0024536:49038-49057 | Msa1418130:intron | 25.0% |
| !! | GTTAGCTTATTCATTGAAAT+GGG | + | tig0024536:49039-49058 | Msa1418130:intron | 25.0% |
| !! | AAAACAATTAAGCACCTTTT+GGG | - | tig0024536:49420-49439 | None:intergenic | 25.0% |
| !! | AAAAACAATTAAGCACCTTT+TGG | - | tig0024536:49421-49440 | None:intergenic | 25.0% |
| ! | GAATTATTGTTATGTTGCAA+AGG | + | tig0024536:49473-49492 | Msa1418130:intron | 25.0% |
| ! | ATATTTACACGAGTAAACTA+AGG | + | tig0024536:49730-49749 | Msa1418130:CDS | 25.0% |
| ! | TCAAGTTTGATATGAATGAA+AGG | + | tig0024536:49812-49831 | Msa1418130:intron | 25.0% |
| ! | CAAGTTTGATATGAATGAAA+GGG | + | tig0024536:49813-49832 | Msa1418130:intron | 25.0% |
| !!! | ATATTTTCTGGAATGCATTA+AGG | - | tig0024536:49902-49921 | None:intergenic | 25.0% |
| !! | AAAAGCTGAGAAATATTTTC+TGG | - | tig0024536:49914-49933 | None:intergenic | 25.0% |
| ! | TAATACACACAGAATATATG+CGG | - | tig0024536:50004-50023 | None:intergenic | 25.0% |
| ! | CAAATAACTATGTGATTCTA+GGG | - | tig0024536:50051-50070 | None:intergenic | 25.0% |
| ! | TAATAATGATTTACATGTCG+AGG | - | tig0024536:50080-50099 | None:intergenic | 25.0% |
| ! | TATTTCATCCGTCATAAAAA+GGG | - | tig0024536:50393-50412 | None:intergenic | 25.0% |
| ! | ATATTTCATCCGTCATAAAA+AGG | - | tig0024536:50394-50413 | None:intergenic | 25.0% |
| !!! | TGAAGCTAAAACTATTTTTG+AGG | + | tig0024536:50570-50589 | Msa1418130:CDS | 25.0% |
| AGGAGCTTATGAAAATAAGT+TGG | + | tig0024536:46933-46952 | Msa1418130:intron | 30.0% | |
| ! | AAGTTTGTTCGTTGAATTAG+CGG | - | tig0024536:47535-47554 | None:intergenic | 30.0% |
| GGAATGTAATTAGTACAAGT+TGG | - | tig0024536:47640-47659 | None:intergenic | 30.0% | |
| CTGGAAATAAGGTCAAAATT+AGG | - | tig0024536:47801-47820 | None:intergenic | 30.0% | |
| !! | CTAATTTTGACCTTATTTCC+AGG | + | tig0024536:47799-47818 | Msa1418130:intron | 30.0% |
| GTAATAAAGTGAGTAATCAG+TGG | - | tig0024536:48056-48075 | None:intergenic | 30.0% | |
| ! | AAAAAATAGGGAAAAGCATG+TGG | + | tig0024536:48176-48195 | Msa1418130:intron | 30.0% |
| TAAATAAACGCAGACAAGAA+CGG | - | tig0024536:48690-48709 | None:intergenic | 30.0% | |
| AAATAGCAATCATGGACAAA+AGG | - | tig0024536:48777-48796 | None:intergenic | 30.0% | |
| !! | TTTTGTCCATGATTGCTATT+TGG | + | tig0024536:48776-48795 | Msa1418130:intron | 30.0% |
| TTCAATGAATAAGCTAACAC+GGG | - | tig0024536:49037-49056 | None:intergenic | 30.0% | |
| TCTAAATCTACAGCTTAACA+TGG | + | tig0024536:49082-49101 | Msa1418130:intron | 30.0% | |
| ! | ACAAATATATAGAGTGCTTC+GGG | - | tig0024536:49170-49189 | None:intergenic | 30.0% |
| ! | CACAAATATATAGAGTGCTT+CGG | - | tig0024536:49171-49190 | None:intergenic | 30.0% |
| ACTCTATATATTTGTGCATG+AGG | + | tig0024536:49175-49194 | Msa1418130:CDS | 30.0% | |
| AGTTCATACACATAAAGTAC+CGG | - | tig0024536:49329-49348 | None:intergenic | 30.0% | |
| ACTTATAGTCTAGGAAAAGA+TGG | + | tig0024536:49501-49520 | Msa1418130:intron | 30.0% | |
| TCTTCTTGTAGACATATATG+CGG | - | tig0024536:49954-49973 | None:intergenic | 30.0% | |
| GCAAATAACTATGTGATTCT+AGG | - | tig0024536:50052-50071 | None:intergenic | 30.0% | |
| AAAAAGTTAAGGATCTTTGC+AGG | + | tig0024536:50222-50241 | Msa1418130:intron | 30.0% | |
| ATATCTTGACAGATAACTTG+GGG | - | tig0024536:50324-50343 | None:intergenic | 30.0% | |
| GATATCTTGACAGATAACTT+GGG | - | tig0024536:50325-50344 | None:intergenic | 30.0% | |
| TGATATCTTGACAGATAACT+TGG | - | tig0024536:50326-50345 | None:intergenic | 30.0% | |
| ! | TTTCCGAACACTTATGATTT+TGG | - | tig0024536:50471-50490 | None:intergenic | 30.0% |
| TCAAAAACACTCTGTGAATG+AGG | - | tig0024536:46585-46604 | None:intergenic | 35.0% | |
| TGCTTTGATGAGTTGTTCAT+TGG | - | tig0024536:46655-46674 | None:intergenic | 35.0% | |
| CAAAGCAGCTTATAGCAAAA+AGG | + | tig0024536:46668-46687 | Msa1418130:CDS | 35.0% | |
| TTACACATTAAGCCTCTGTT+TGG | + | tig0024536:46803-46822 | Msa1418130:intron | 35.0% | |
| TAAGCTGTTTATCCAAACAG+AGG | - | tig0024536:46818-46837 | None:intergenic | 35.0% | |
| GATAAACAGCTTATTTCGCA+TGG | + | tig0024536:46825-46844 | Msa1418130:intron | 35.0% | |
| CCAAACAGTAACAAAGTCTT+AGG | - | tig0024536:47064-47083 | None:intergenic | 35.0% | |
| CCTAAGACTTTGTTACTGTT+TGG | + | tig0024536:47061-47080 | Msa1418130:intron | 35.0% | |
| !! | ACTAGCTGATAGTGGATAAA+CGG | + | tig0024536:47115-47134 | Msa1418130:intron | 35.0% |
| CCATAAGCTCAAATACTACT+CGG | + | tig0024536:47328-47347 | Msa1418130:intron | 35.0% | |
| TGAGCTTGTATGTTTGGTAA+TGG | - | tig0024536:47416-47435 | None:intergenic | 35.0% | |
| AGCATATGAGCTTGTATGTT+TGG | - | tig0024536:47422-47441 | None:intergenic | 35.0% | |
| TCCACTATAAGTTAGCAGTT+TGG | + | tig0024536:47450-47469 | Msa1418130:intron | 35.0% | |
| ! | GTTGGGTGTAGCTTAAATTT+TGG | - | tig0024536:47622-47641 | None:intergenic | 35.0% |
| AGGAAAGTTTAATGCCATCA+GGG | - | tig0024536:48237-48256 | None:intergenic | 35.0% | |
| TTGAGTATGGCTCAAATTCA+TGG | + | tig0024536:48400-48419 | Msa1418130:intron | 35.0% | |
| GCTCAAATTCATGGATAAGT+GGG | + | tig0024536:48409-48428 | Msa1418130:intron | 35.0% | |
| ! | GTTTTCCAATAATGCAATCC+TGG | - | tig0024536:48612-48631 | None:intergenic | 35.0% |
| TTTATCTGTTTGTGTAGAGC+TGG | + | tig0024536:48706-48725 | Msa1418130:intron | 35.0% | |
| TTATCTGTTTGTGTAGAGCT+GGG | + | tig0024536:48707-48726 | Msa1418130:intron | 35.0% | |
| CACAAACCAAATAGCAATCA+TGG | - | tig0024536:48785-48804 | None:intergenic | 35.0% | |
| AGCTTATTCATTGAAATGGG+TGG | + | tig0024536:49042-49061 | Msa1418130:intron | 35.0% | |
| GCTTATTCATTGAAATGGGT+GGG | + | tig0024536:49043-49062 | Msa1418130:intron | 35.0% | |
| AATCTACAGCTTAACATGGA+AGG | + | tig0024536:49086-49105 | Msa1418130:intron | 35.0% | |
| ATCTACAGCTTAACATGGAA+GGG | + | tig0024536:49087-49106 | Msa1418130:intron | 35.0% | |
| AAAGGTGAAGCGTATAGAAA+TGG | + | tig0024536:49139-49158 | Msa1418130:CDS | 35.0% | |
| TGATGTACAAATCCAACCAT+GGG | - | tig0024536:49281-49300 | None:intergenic | 35.0% | |
| AAGGACACAACTTATAGTCT+AGG | + | tig0024536:49492-49511 | Msa1418130:intron | 35.0% | |
| ! | ACTTTTCTTGTAGAACTGCA+TGG | + | tig0024536:49662-49681 | Msa1418130:intron | 35.0% |
| ! | CTTTTCTTGTAGAACTGCAT+GGG | + | tig0024536:49663-49682 | Msa1418130:intron | 35.0% |
| TGTTGTGCTAACTGTTCAAA+AGG | + | tig0024536:49689-49708 | Msa1418130:CDS | 35.0% | |
| GGCTTATACAAAAGCAGTTA+GGG | - | tig0024536:49856-49875 | None:intergenic | 35.0% | |
| AGGCTTATACAAAAGCAGTT+AGG | - | tig0024536:49857-49876 | None:intergenic | 35.0% | |
| ! | ATATTTCTCAGCTTTTGAGC+AGG | + | tig0024536:49918-49937 | Msa1418130:intron | 35.0% |
| !! | AACACTTATGATTTTGGAGG+GGG | - | tig0024536:50465-50484 | None:intergenic | 35.0% |
| !! | GAACACTTATGATTTTGGAG+GGG | - | tig0024536:50466-50485 | None:intergenic | 35.0% |
| ! | CGAACACTTATGATTTTGGA+GGG | - | tig0024536:50467-50486 | None:intergenic | 35.0% |
| CCTCCAAAATCATAAGTGTT+CGG | + | tig0024536:50465-50484 | Msa1418130:intron | 35.0% | |
| !! | TGTTTCTTGCATTGGTTCCA+CGG | - | tig0024536:46502-46521 | None:intergenic | 40.0% |
| ! | ACATAACTGTTCCGTTTTGC+AGG | + | tig0024536:46611-46630 | Msa1418130:intron | 40.0% |
| GATAAATGGGAAAAGAAGCG+AGG | - | tig0024536:46698-46717 | None:intergenic | 40.0% | |
| ATTTCGAAGCGGCGATAAAT+GGG | - | tig0024536:46711-46730 | None:intergenic | 40.0% | |
| AATTTCGAAGCGGCGATAAA+TGG | - | tig0024536:46712-46731 | None:intergenic | 40.0% | |
| TATCGCCGCTTCGAAATTAA+CGG | + | tig0024536:46714-46733 | Msa1418130:CDS | 40.0% | |
| GGTTACCGTTAATTTCGAAG+CGG | - | tig0024536:46722-46741 | None:intergenic | 40.0% | |
| ACAAAGTCTTAGGACGTGTT+TGG | - | tig0024536:47054-47073 | None:intergenic | 40.0% | |
| !! | CTAGCTGATAGTGGATAAAC+GGG | + | tig0024536:47116-47135 | Msa1418130:intron | 40.0% |
| CCGAGTAGTATTTGAGCTTA+TGG | - | tig0024536:47331-47350 | None:intergenic | 40.0% | |
| GCCAAACTGCTAACTTATAG+TGG | - | tig0024536:47454-47473 | None:intergenic | 40.0% | |
| !! | AGTCAGACACTCGTCATTTT+AGG | - | tig0024536:47491-47510 | None:intergenic | 40.0% |
| ! | GGGTGTAGCTTAAATTTTGG+AGG | - | tig0024536:47619-47638 | None:intergenic | 40.0% |
| CACTGTTCACTCCTGTAATT+AGG | - | tig0024536:47661-47680 | None:intergenic | 40.0% | |
| ATCCAGACTTTAGGTACATG+TGG | + | tig0024536:47864-47883 | Msa1418130:intron | 40.0% | |
| GGAAAGTTTAATGCCATCAG+GGG | - | tig0024536:48236-48255 | None:intergenic | 40.0% | |
| GAGGAAAGTTTAATGCCATC+AGG | - | tig0024536:48238-48257 | None:intergenic | 40.0% | |
| GGCTCAAATTCATGGATAAG+TGG | + | tig0024536:48408-48427 | Msa1418130:intron | 40.0% | |
| TAGGAATGATCCAAGCTCAA+AGG | - | tig0024536:48490-48509 | None:intergenic | 40.0% | |
| TTTGAGCTTGGATCATTCCT+AGG | + | tig0024536:48489-48508 | Msa1418130:intron | 40.0% | |
| TTGAGCTTGGATCATTCCTA+GGG | + | tig0024536:48490-48509 | Msa1418130:intron | 40.0% | |
| TAATGCAATCCTGGAAGCTA+CGG | - | tig0024536:48603-48622 | None:intergenic | 40.0% | |
| AGCTTCCAGGATTGCATTAT+TGG | + | tig0024536:48604-48623 | Msa1418130:intron | 40.0% | |
| ! | GTTTGAGATGTAGGCACAAT+TGG | + | tig0024536:48650-48669 | Msa1418130:intron | 40.0% |
| CAAGAACGGACAATGGAATT+CGG | - | tig0024536:48676-48695 | None:intergenic | 40.0% | |
| AGATATCTCTCGTGACTCAT+GGG | - | tig0024536:48744-48763 | None:intergenic | 40.0% | |
| TAGATATCTCTCGTGACTCA+TGG | - | tig0024536:48745-48764 | None:intergenic | 40.0% | |
| ! | TTAACATGGAAGGGCCTTAT+GGG | + | tig0024536:49096-49115 | Msa1418130:CDS | 40.0% |
| ! | CTTCTTGACGACTAGTTGAA+GGG | - | tig0024536:49250-49269 | None:intergenic | 40.0% |
| ! | TCTTCTTGACGACTAGTTGA+AGG | - | tig0024536:49251-49270 | None:intergenic | 40.0% |
| ACTAGTCGTCAAGAAGATAG+TGG | + | tig0024536:49254-49273 | Msa1418130:CDS | 40.0% | |
| GTGATGTACAAATCCAACCA+TGG | - | tig0024536:49282-49301 | None:intergenic | 40.0% | |
| !!! | TGTACATCACCGCTTTGTTT+TGG | + | tig0024536:49292-49311 | Msa1418130:CDS | 40.0% |
| CCTCTTCTTCCAAAACAAAG+CGG | - | tig0024536:49304-49323 | None:intergenic | 40.0% | |
| !!! | TGTTTTGGAAGAAGAGGTAC+CGG | + | tig0024536:49307-49326 | Msa1418130:CDS | 40.0% |
| TATTGAGCTTATCGCCCAAA+AGG | + | tig0024536:49403-49422 | Msa1418130:CDS | 40.0% | |
| TGTAGACATATATGCGGTTC+AGG | - | tig0024536:49948-49967 | None:intergenic | 40.0% | |
| ! | TTTCCCCTCCCTTTTTATGA+CGG | + | tig0024536:50382-50401 | Msa1418130:intron | 40.0% |
| TCATCCGTCATAAAAAGGGA+GGG | - | tig0024536:50389-50408 | None:intergenic | 40.0% | |
| TTCATCCGTCATAAAAAGGG+AGG | - | tig0024536:50390-50409 | None:intergenic | 40.0% | |
| ! | CCGAACACTTATGATTTTGG+AGG | - | tig0024536:50468-50487 | None:intergenic | 40.0% |
| TTTCAGTTCTCAGATGCAGA+TGG | + | tig0024536:50510-50529 | Msa1418130:intron | 40.0% | |
| !! | GGCGTTGTTGTTTCTTGCAT+TGG | - | tig0024536:46510-46529 | None:intergenic | 45.0% |
| CCTTCTTCTCTCTGTAACGA+CGG | - | tig0024536:46531-46550 | None:intergenic | 45.0% | |
| CTTTGCGAGTACCTGCAAAA+CGG | - | tig0024536:46625-46644 | None:intergenic | 45.0% | |
| GGGGATAAACTAGCTGATAG+TGG | + | tig0024536:47107-47126 | Msa1418130:intron | 45.0% | |
| !! | ATTTTAGGCTCTGGTTGGCA+AGG | - | tig0024536:47476-47495 | None:intergenic | 45.0% |
| !! | TCGTCATTTTAGGCTCTGGT+TGG | - | tig0024536:47481-47500 | None:intergenic | 45.0% |
| !! | ACACTCGTCATTTTAGGCTC+TGG | - | tig0024536:47485-47504 | None:intergenic | 45.0% |
| CTGACTTTAGACACACTGTG+AGG | - | tig0024536:47825-47844 | None:intergenic | 45.0% | |
| ! | CTCACAGTGTGTCTAAAGTC+AGG | + | tig0024536:47823-47842 | Msa1418130:CDS | 45.0% |
| CTCCACATGTACCTAAAGTC+TGG | - | tig0024536:47869-47888 | None:intergenic | 45.0% | |
| ACACATATAGCACACACGCA+CGG | - | tig0024536:48139-48158 | None:intergenic | 45.0% | |
| GATGCATGTTGGAGCTATGT+GGG | - | tig0024536:48211-48230 | None:intergenic | 45.0% | |
| AAGTTTAATGCCATCAGGGG+AGG | - | tig0024536:48233-48252 | None:intergenic | 45.0% | |
| GATCTGTAAGTGCAACGTAG+TGG | + | tig0024536:48450-48469 | Msa1418130:intron | 45.0% | |
| CATTCCTAGGGTTGAGATTG+CGG | + | tig0024536:48502-48521 | Msa1418130:intron | 45.0% | |
| ATTCCTAGGGTTGAGATTGC+GGG | + | tig0024536:48503-48522 | Msa1418130:intron | 45.0% | |
| TAACCCCTAAACTGTGCCAT+GGG | - | tig0024536:48538-48557 | None:intergenic | 45.0% | |
| TTAACCCCTAAACTGTGCCA+TGG | - | tig0024536:48539-48558 | None:intergenic | 45.0% | |
| ! | CGCTCTGTTGTTTGAGATGT+AGG | + | tig0024536:48641-48660 | Msa1418130:intron | 45.0% |
| CTCGTGACTCATGGGTAAAT+AGG | - | tig0024536:48736-48755 | None:intergenic | 45.0% | |
| ! | GTTTTTGCCTTGAAACCTCG+TGG | + | tig0024536:48933-48952 | Msa1418130:intron | 45.0% |
| CTTAACATGGAAGGGCCTTA+TGG | + | tig0024536:49095-49114 | Msa1418130:CDS | 45.0% | |
| ! | TAACATGGAAGGGCCTTATG+GGG | + | tig0024536:49097-49116 | Msa1418130:CDS | 45.0% |
| ! | CTTTTCTTCCTCTTGCCACT+CGG | - | tig0024536:49123-49142 | None:intergenic | 45.0% |
| GAAGACAACCTTGTTCACTG+AGG | + | tig0024536:49220-49239 | Msa1418130:CDS | 45.0% | |
| ! | TCAAGAAGATAGTGGTCCCA+TGG | + | tig0024536:49262-49281 | Msa1418130:CDS | 45.0% |
| !!! | CCGCTTTGTTTTGGAAGAAG+AGG | + | tig0024536:49301-49320 | Msa1418130:CDS | 45.0% |
| AGGGTTGGGAAAGCTTCTAA+TGG | + | tig0024536:49376-49395 | Msa1418130:CDS | 45.0% | |
| CATCCGTCATAAAAAGGGAG+GGG | - | tig0024536:50388-50407 | None:intergenic | 45.0% | |
| ATCAGCTACGTCACCTTCTA+AGG | + | tig0024536:50434-50453 | Msa1418130:intron | 45.0% | |
| AGCATCTCGGAGTACATTGC+TGG | - | tig0024536:46470-46489 | None:intergenic | 50.0% | |
| CCGTCGTTACAGAGAGAAGA+AGG | + | tig0024536:46528-46547 | Msa1418130:CDS | 50.0% | |
| CACTGTGAGGCCTGGAAATA+AGG | - | tig0024536:47812-47831 | None:intergenic | 50.0% | |
| TTTAGACACACTGTGAGGCC+TGG | - | tig0024536:47820-47839 | None:intergenic | 50.0% | |
| ! | AGTGTGTCTAAAGTCAGGCC+AGG | + | tig0024536:47828-47847 | Msa1418130:CDS | 50.0% |
| GGATGCATGTTGGAGCTATG+TGG | - | tig0024536:48212-48231 | None:intergenic | 50.0% | |
| !! | GTGCAACGTAGTGGATCAAG+CGG | + | tig0024536:48459-48478 | Msa1418130:intron | 50.0% |
| TTCCTAGGGTTGAGATTGCG+GGG | + | tig0024536:48504-48523 | Msa1418130:intron | 50.0% | |
| AACCCCTAAACTGTGCCATG+GGG | - | tig0024536:48537-48556 | None:intergenic | 50.0% | |
| ACGCAGACAAGAACGGACAA+TGG | - | tig0024536:48683-48702 | None:intergenic | 50.0% | |
| ACTATCATGAGGGCAAGCCT+TGG | + | tig0024536:48898-48917 | Msa1418130:intron | 50.0% | |
| AAAACCTTGCCCTTGTGCCA+AGG | - | tig0024536:48918-48937 | None:intergenic | 50.0% | |
| GTGTGATCCACGAGGTTTCA+AGG | - | tig0024536:48943-48962 | None:intergenic | 50.0% | |
| CGAGTGGCAAGAGGAAGAAA+AGG | + | tig0024536:49121-49140 | Msa1418130:CDS | 50.0% | |
| AGGGTCTTCCTCAGTGAACA+AGG | - | tig0024536:49231-49250 | None:intergenic | 50.0% | |
| ! | GAAGATAGTGGTCCCATGGT+TGG | + | tig0024536:49266-49285 | Msa1418130:CDS | 50.0% |
| GGAGGGGGATAAACCTTAGA+AGG | - | tig0024536:50450-50469 | None:intergenic | 50.0% | |
| ! | ACGGTGAGGTTGGAGCATCT+CGG | - | tig0024536:46483-46502 | None:intergenic | 55.0% |
| !! | CATTGGTTCCACGGTGAGGT+TGG | - | tig0024536:46493-46512 | None:intergenic | 55.0% |
| !! | CTTGCATTGGTTCCACGGTG+AGG | - | tig0024536:46497-46516 | None:intergenic | 55.0% |
| TAAAGTCAGGCCAGGCACTC+AGG | + | tig0024536:47836-47855 | Msa1418130:intron | 55.0% | |
| AAAGTCAGGCCAGGCACTCA+GGG | + | tig0024536:47837-47856 | Msa1418130:intron | 55.0% | |
| CATCAGGGGAGGATGCATGT+TGG | - | tig0024536:48222-48241 | None:intergenic | 55.0% | |
| CAACATGCATCCTCCCCTGA+TGG | + | tig0024536:48220-48239 | Msa1418130:intron | 55.0% | |
| AGCGGTCATGCCTTTGAGCT+TGG | + | tig0024536:48477-48496 | Msa1418130:intron | 55.0% | |
| TCCTAGGGTTGAGATTGCGG+GGG | + | tig0024536:48505-48524 | Msa1418130:intron | 55.0% | |
| ATGCCCCCATGGCACAGTTT+AGG | + | tig0024536:48530-48549 | Msa1418130:intron | 55.0% | |
| TGCCCCCATGGCACAGTTTA+GGG | + | tig0024536:48531-48550 | Msa1418130:intron | 55.0% | |
| ACCCCTAAACTGTGCCATGG+GGG | - | tig0024536:48536-48555 | None:intergenic | 55.0% | |
| CTTTGTGCTCCGTAGCTTCC+AGG | + | tig0024536:48591-48610 | Msa1418130:intron | 55.0% | |
| ! | AGCCTTGTGTCCAGGGGAAA+GGG | + | tig0024536:49357-49376 | Msa1418130:CDS | 55.0% |
| AACCCTTTCCCCTGGACACA+AGG | - | tig0024536:49362-49381 | None:intergenic | 55.0% | |
| TTGTGTCCAGGGGAAAGGGT+TGG | + | tig0024536:49361-49380 | Msa1418130:CDS | 55.0% | |
| TGTGTCCAGGGGAAAGGGTT+GGG | + | tig0024536:49362-49381 | Msa1418130:CDS | 55.0% | |
| GAGATGCTCCAACCTCACCG+TGG | + | tig0024536:46482-46501 | Msa1418130:CDS | 60.0% | |
| AAGTCAGGCCAGGCACTCAG+GGG | + | tig0024536:47838-47857 | Msa1418130:intron | 60.0% | |
| CAGGGGCGGATCCAGACTTT+AGG | + | tig0024536:47855-47874 | Msa1418130:intron | 60.0% | |
| GCCCCCATGGCACAGTTTAG+GGG | + | tig0024536:48532-48551 | Msa1418130:intron | 60.0% | |
| TGAGGGCAAGCCTTGGCACA+AGG | + | tig0024536:48905-48924 | Msa1418130:intron | 60.0% | |
| GAGGGCAAGCCTTGGCACAA+GGG | + | tig0024536:48906-48925 | Msa1418130:intron | 60.0% | |
| CAAGCCTTGGCACAAGGGCA+AGG | + | tig0024536:48911-48930 | Msa1418130:intron | 60.0% | |
| GCGGCAATGTGTGATCCACG+AGG | - | tig0024536:48951-48970 | None:intergenic | 60.0% | |
| TCTTGCCACTCGGCCCCATA+AGG | - | tig0024536:49113-49132 | None:intergenic | 60.0% | |
| TTATGGGGCCGAGTGGCAAG+AGG | + | tig0024536:49112-49131 | Msa1418130:CDS | 60.0% | |
| ! | ACAGCTCGAGCCTTGTGTCC+AGG | + | tig0024536:49349-49368 | Msa1418130:CDS | 60.0% |
| ! | CAGCTCGAGCCTTGTGTCCA+GGG | + | tig0024536:49350-49369 | Msa1418130:CDS | 60.0% |
| ! | AGCTCGAGCCTTGTGTCCAG+GGG | + | tig0024536:49351-49370 | Msa1418130:CDS | 60.0% |
| ! | GAGCCTTGTGTCCAGGGGAA+AGG | + | tig0024536:49356-49375 | Msa1418130:CDS | 60.0% |
| GCTTTCCCAACCCTTTCCCC+TGG | - | tig0024536:49370-49389 | None:intergenic | 60.0% | |
| GCCCCCGCAATCTCAACCCT+AGG | - | tig0024536:48509-48528 | None:intergenic | 65.0% | |
| ! | AAGGGCCTTATGGGGCCGAG+TGG | + | tig0024536:49105-49124 | Msa1418130:CDS | 65.0% |
| TCAGGCCAGGCACTCAGGGG+CGG | + | tig0024536:47841-47860 | Msa1418130:intron | 70.0% | |
| TGGATCCGCCCCTGAGTGCC+TGG | - | tig0024536:47849-47868 | None:intergenic | 70.0% | |
| TTGCGGGGGCAATGCCCCCA+TGG | + | tig0024536:48519-48538 | Msa1418130:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024536 | gene | 46428 | 50615 | 46428 | ID=Msa1418130;Name=Msa1418130 |
| tig0024536 | mRNA | 46428 | 50615 | 46428 | ID=Msa1418130-mRNA-1;Parent=Msa1418130;Name=Msa1418130-mRNA-1;_AED=0.22;_eAED=0.22;_QI=45|0.83|0.71|1|0.5|0.42|7|0|260 |
| tig0024536 | exon | 46428 | 46565 | 46428 | ID=Msa1418130-mRNA-1:exon:196;Parent=Msa1418130-mRNA-1 |
| tig0024536 | exon | 46633 | 46735 | 46633 | ID=Msa1418130-mRNA-1:exon:197;Parent=Msa1418130-mRNA-1 |
| tig0024536 | exon | 47821 | 47849 | 47821 | ID=Msa1418130-mRNA-1:exon:198;Parent=Msa1418130-mRNA-1 |
| tig0024536 | exon | 48241 | 48291 | 48241 | ID=Msa1418130-mRNA-1:exon:199;Parent=Msa1418130-mRNA-1 |
| tig0024536 | exon | 49095 | 49424 | 49095 | ID=Msa1418130-mRNA-1:exon:200;Parent=Msa1418130-mRNA-1 |
| tig0024536 | exon | 49675 | 49751 | 49675 | ID=Msa1418130-mRNA-1:exon:201;Parent=Msa1418130-mRNA-1 |
| tig0024536 | exon | 50516 | 50615 | 50516 | ID=Msa1418130-mRNA-1:exon:202;Parent=Msa1418130-mRNA-1 |
| tig0024536 | five_prime_UTR | 46428 | 46472 | 46428 | ID=Msa1418130-mRNA-1:five_prime_utr;Parent=Msa1418130-mRNA-1 |
| tig0024536 | CDS | 46473 | 46565 | 46473 | ID=Msa1418130-mRNA-1:cds;Parent=Msa1418130-mRNA-1 |
| tig0024536 | CDS | 46633 | 46735 | 46633 | ID=Msa1418130-mRNA-1:cds;Parent=Msa1418130-mRNA-1 |
| tig0024536 | CDS | 47821 | 47849 | 47821 | ID=Msa1418130-mRNA-1:cds;Parent=Msa1418130-mRNA-1 |
| tig0024536 | CDS | 48241 | 48291 | 48241 | ID=Msa1418130-mRNA-1:cds;Parent=Msa1418130-mRNA-1 |
| tig0024536 | CDS | 49095 | 49424 | 49095 | ID=Msa1418130-mRNA-1:cds;Parent=Msa1418130-mRNA-1 |
| tig0024536 | CDS | 49675 | 49751 | 49675 | ID=Msa1418130-mRNA-1:cds;Parent=Msa1418130-mRNA-1 |
| tig0024536 | CDS | 50516 | 50615 | 50516 | ID=Msa1418130-mRNA-1:cds;Parent=Msa1418130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
