Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418290 | sp|Q38741|SBP1_ANTMA | 60.177 | 113 | 41 | 1 | 30 | 142 | 22 | 130 | 8.29e-39 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418290 | A0A072VA58 | 94.737 | 171 | 9 | 0 | 7 | 177 | 1 | 171 | 4.33e-101 | 297 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1418290 | TF | SBP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418290 | MtrunA17_Chr2g0317041 | 91.818 | 110 | 9 | 0 | 1 | 110 | 36 | 145 | 1.65e-56 | 175 |
| Msa1418290 | MtrunA17_Chr8g0360361 | 68.333 | 120 | 36 | 1 | 60 | 177 | 61 | 180 | 1.79e-51 | 163 |
| Msa1418290 | MtrunA17_Chr2g0317031 | 95.522 | 67 | 3 | 0 | 111 | 177 | 9 | 75 | 3.00e-42 | 136 |
| Msa1418290 | MtrunA17_Chr2g0282521 | 60.952 | 105 | 39 | 1 | 38 | 140 | 36 | 140 | 3.14e-38 | 128 |
| Msa1418290 | MtrunA17_Chr4g0046991 | 67.391 | 92 | 30 | 0 | 48 | 139 | 57 | 148 | 4.02e-38 | 128 |
| Msa1418290 | MtrunA17_Chr8g0334671 | 61.765 | 102 | 39 | 0 | 37 | 138 | 160 | 261 | 4.76e-36 | 127 |
| Msa1418290 | MtrunA17_Chr3g0122411 | 64.045 | 89 | 32 | 0 | 49 | 137 | 150 | 238 | 8.30e-36 | 129 |
| Msa1418290 | MtrunA17_Chr7g0258471 | 72.727 | 77 | 21 | 0 | 61 | 137 | 139 | 215 | 1.70e-34 | 125 |
| Msa1418290 | MtrunA17_Chr2g0302791 | 67.442 | 86 | 28 | 0 | 64 | 149 | 139 | 224 | 1.73e-34 | 128 |
| Msa1418290 | MtrunA17_Chr7g0270541 | 67.391 | 92 | 30 | 0 | 56 | 147 | 137 | 228 | 3.39e-34 | 127 |
| Msa1418290 | MtrunA17_Chr1g0194121 | 62.376 | 101 | 38 | 0 | 49 | 149 | 132 | 232 | 4.32e-34 | 127 |
| Msa1418290 | MtrunA17_Chr7g0231911 | 63.158 | 95 | 35 | 0 | 56 | 150 | 141 | 235 | 1.02e-33 | 121 |
| Msa1418290 | MtrunA17_Chr2g0308321 | 59.813 | 107 | 42 | 1 | 63 | 169 | 170 | 275 | 1.44e-33 | 124 |
| Msa1418290 | MtrunA17_Chr5g0420051 | 58.947 | 95 | 39 | 0 | 62 | 156 | 179 | 273 | 2.92e-32 | 119 |
| Msa1418290 | MtrunA17_Chr4g0061651 | 70.667 | 75 | 22 | 0 | 63 | 137 | 122 | 196 | 3.66e-32 | 119 |
| Msa1418290 | MtrunA17_Chr1g0162871 | 70.130 | 77 | 23 | 0 | 62 | 138 | 102 | 178 | 3.53e-31 | 118 |
| Msa1418290 | MtrunA17_Chr8g0377401 | 59.756 | 82 | 33 | 0 | 61 | 142 | 159 | 240 | 2.58e-30 | 111 |
| Msa1418290 | MtrunA17_Chr3g0132091 | 54.839 | 93 | 42 | 0 | 64 | 156 | 73 | 165 | 2.72e-30 | 113 |
| Msa1418290 | MtrunA17_Chr8g0377421 | 42.424 | 132 | 74 | 2 | 7 | 137 | 75 | 205 | 2.25e-29 | 109 |
| Msa1418290 | MtrunA17_Chr7g0224821 | 51.485 | 101 | 48 | 1 | 63 | 163 | 76 | 175 | 4.21e-29 | 110 |
| Msa1418290 | MtrunA17_Chr8g0386271 | 60.714 | 84 | 33 | 0 | 64 | 147 | 99 | 182 | 1.05e-28 | 109 |
| Msa1418290 | MtrunA17_Chr2g0286661 | 55.405 | 74 | 33 | 0 | 64 | 137 | 103 | 176 | 1.01e-23 | 97.1 |
| Msa1418290 | MtrunA17_Chr1g0175031 | 62.963 | 54 | 20 | 0 | 57 | 110 | 67 | 120 | 5.21e-17 | 73.6 |
| Msa1418290 | MtrunA17_Chr8g0377431 | 56.897 | 58 | 25 | 0 | 62 | 119 | 149 | 206 | 5.04e-16 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418290 | AT1G53160.3 | 63.551 | 107 | 36 | 2 | 50 | 156 | 42 | 145 | 5.41e-39 | 131 |
| Msa1418290 | AT1G53160.2 | 65.049 | 103 | 33 | 2 | 54 | 156 | 46 | 145 | 9.50e-39 | 130 |
| Msa1418290 | AT1G53160.1 | 65.049 | 103 | 33 | 2 | 54 | 156 | 46 | 145 | 9.50e-39 | 130 |
| Msa1418290 | AT3G15270.1 | 51.351 | 148 | 65 | 2 | 7 | 148 | 1 | 147 | 1.51e-38 | 130 |
| Msa1418290 | AT1G02065.1 | 61.321 | 106 | 37 | 2 | 50 | 151 | 171 | 276 | 9.16e-37 | 130 |
| Msa1418290 | AT2G33810.1 | 71.250 | 80 | 23 | 0 | 60 | 139 | 50 | 129 | 6.82e-36 | 122 |
| Msa1418290 | AT1G69170.1 | 56.731 | 104 | 45 | 0 | 34 | 137 | 94 | 197 | 2.99e-35 | 127 |
| Msa1418290 | AT3G60030.1 | 62.136 | 103 | 34 | 2 | 64 | 166 | 127 | 224 | 1.26e-34 | 129 |
| Msa1418290 | AT1G20980.1 | 60.784 | 102 | 38 | 1 | 54 | 155 | 112 | 211 | 8.57e-34 | 126 |
| Msa1418290 | AT2G42200.1 | 68.675 | 83 | 26 | 0 | 62 | 144 | 72 | 154 | 1.85e-33 | 122 |
| Msa1418290 | AT2G47070.1 | 55.963 | 109 | 46 | 1 | 64 | 172 | 106 | 212 | 8.68e-33 | 123 |
| Msa1418290 | AT5G43270.3 | 61.798 | 89 | 34 | 0 | 58 | 146 | 163 | 251 | 4.17e-32 | 119 |
| Msa1418290 | AT5G43270.1 | 61.798 | 89 | 34 | 0 | 58 | 146 | 163 | 251 | 4.17e-32 | 119 |
| Msa1418290 | AT5G43270.2 | 61.798 | 89 | 34 | 0 | 58 | 146 | 163 | 251 | 4.17e-32 | 119 |
| Msa1418290 | AT1G76580.1 | 54.717 | 106 | 47 | 1 | 62 | 167 | 112 | 216 | 9.92e-32 | 120 |
| Msa1418290 | AT1G76580.3 | 54.717 | 106 | 47 | 1 | 62 | 167 | 112 | 216 | 4.95e-31 | 118 |
| Msa1418290 | AT1G76580.2 | 54.717 | 106 | 47 | 1 | 62 | 167 | 112 | 216 | 5.70e-31 | 118 |
| Msa1418290 | AT3G57920.1 | 67.089 | 79 | 26 | 0 | 64 | 142 | 59 | 137 | 6.06e-31 | 115 |
| Msa1418290 | AT1G27370.6 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 3.89e-30 | 112 |
| Msa1418290 | AT1G27370.1 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa1418290 | AT1G27370.5 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa1418290 | AT1G27370.3 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa1418290 | AT1G27370.2 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa1418290 | AT1G27370.4 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa1418290 | AT1G27370.7 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa1418290 | AT5G50570.1 | 63.158 | 76 | 28 | 0 | 62 | 137 | 99 | 174 | 7.77e-29 | 109 |
| Msa1418290 | AT5G50570.2 | 63.158 | 76 | 28 | 0 | 62 | 137 | 99 | 174 | 7.77e-29 | 109 |
| Msa1418290 | AT5G50670.1 | 63.158 | 76 | 28 | 0 | 62 | 137 | 99 | 174 | 7.77e-29 | 109 |
| Msa1418290 | AT5G50670.2 | 63.158 | 76 | 28 | 0 | 62 | 137 | 99 | 174 | 7.77e-29 | 109 |
| Msa1418290 | AT1G27360.2 | 60.976 | 82 | 32 | 0 | 56 | 137 | 167 | 248 | 9.01e-29 | 110 |
| Msa1418290 | AT1G27360.1 | 60.976 | 82 | 32 | 0 | 56 | 137 | 167 | 248 | 9.01e-29 | 110 |
| Msa1418290 | AT1G27360.3 | 60.976 | 82 | 32 | 0 | 56 | 137 | 167 | 248 | 9.01e-29 | 110 |
| Msa1418290 | AT1G27360.4 | 60.976 | 82 | 32 | 0 | 56 | 137 | 167 | 248 | 9.01e-29 | 110 |
| Msa1418290 | AT5G18830.2 | 47.368 | 95 | 47 | 1 | 64 | 155 | 138 | 232 | 6.64e-22 | 92.4 |
| Msa1418290 | AT5G18830.1 | 47.368 | 95 | 47 | 1 | 64 | 155 | 138 | 232 | 6.75e-22 | 92.4 |
| Msa1418290 | AT5G18830.3 | 47.368 | 95 | 47 | 1 | 64 | 155 | 138 | 232 | 7.31e-22 | 92.0 |
| Msa1418290 | AT1G02065.2 | 60.811 | 74 | 24 | 2 | 50 | 118 | 171 | 244 | 1.39e-21 | 88.6 |
| Msa1418290 | AT2G47070.2 | 74.510 | 51 | 13 | 0 | 88 | 138 | 1 | 51 | 6.99e-20 | 86.7 |
Find 36 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTTCTACTTGACAAAA+AGG | 0.293853 | tig0024566:+62050 | None:intergenic |
| GCATCTGTTGTGGTGGTTGC+AGG | 0.368915 | tig0024566:-61960 | Msa1418290:CDS |
| AATGAACCTCACAAACCTTA+TGG | 0.389353 | tig0024566:+61988 | None:intergenic |
| AAACATCAGTTGAGAAGGTT+TGG | 0.391376 | tig0024566:-62202 | Msa1418290:CDS |
| GATCACACCTGCTACATTGT+TGG | 0.396569 | tig0024566:+61919 | None:intergenic |
| ATGAACATAACAAGTAGTTC+TGG | 0.412406 | tig0024566:-59368 | Msa1418290:CDS |
| AGCAAAATCATGATGGTGAT+TGG | 0.426111 | tig0024566:-59403 | Msa1418290:CDS |
| TGCACTGAAGGAAGCGGTAC+TGG | 0.443322 | tig0024566:-59428 | Msa1418290:CDS |
| AAGAAAGGTGTTTGTGTGAG+TGG | 0.453403 | tig0024566:-62110 | Msa1418290:CDS |
| AACCACCACAACAGATGCTT+TGG | 0.458273 | tig0024566:+61965 | None:intergenic |
| TTGTGGTGGTTGCAGGGATA+AGG | 0.463071 | tig0024566:-61953 | Msa1418290:CDS |
| CGGCGTCGTAAAAGCACTGC+TGG | 0.466987 | tig0024566:-59455 | Msa1418290:CDS |
| AGAAATAGAAGTTGAAGAAG+AGG | 0.475722 | tig0024566:-62162 | Msa1418290:CDS |
| GAAAATCTTCCACCTCTACT+TGG | 0.489950 | tig0024566:+62077 | None:intergenic |
| GAGATATCATCGTCGCCATA+AGG | 0.496552 | tig0024566:-62003 | Msa1418290:CDS |
| GGAAGCAAGGAATACAATAG+AGG | 0.502654 | tig0024566:-62231 | Msa1418290:CDS |
| GAAGCAAGGAATACAATAGA+GGG | 0.522960 | tig0024566:-62230 | Msa1418290:CDS |
| GTTGAAGAAGAGGAGGAAGG+TGG | 0.527678 | tig0024566:-62152 | Msa1418290:CDS |
| ACTGCTGGAACTTGCACTGA+AGG | 0.529046 | tig0024566:-59440 | Msa1418290:CDS |
| GAAGTTGAAGAAGAGGAGGA+AGG | 0.550030 | tig0024566:-62155 | Msa1418290:CDS |
| AATAGAAGTTGAAGAAGAGG+AGG | 0.552525 | tig0024566:-62159 | Msa1418290:CDS |
| AGAAAGGTGTTTGTGTGAGT+GGG | 0.554222 | tig0024566:-62109 | Msa1418290:CDS |
| TTCCAAAGCATCTGTTGTGG+TGG | 0.554775 | tig0024566:-61967 | Msa1418290:CDS |
| GAAGATGATGAGAAGAAGAA+AGG | 0.566806 | tig0024566:-62125 | Msa1418290:CDS |
| GAAGCAAACATCAGTTGAGA+AGG | 0.569996 | tig0024566:-62207 | Msa1418290:CDS |
| AGAAAAGAGCCAAGTAGAGG+TGG | 0.571945 | tig0024566:-62086 | Msa1418290:CDS |
| TGGTTGCAGGGATAAGGCAG+AGG | 0.586383 | tig0024566:-61947 | Msa1418290:CDS |
| GGAACTTGCACTGAAGGAAG+CGG | 0.610870 | tig0024566:-59434 | Msa1418290:CDS |
| CATCTGTTGTGGTGGTTGCA+GGG | 0.612833 | tig0024566:-61959 | Msa1418290:CDS |
| CATAGTACACAATGGAAGCA+AGG | 0.613876 | tig0024566:-62244 | None:intergenic |
| TCATTCCAAAGCATCTGTTG+TGG | 0.621345 | tig0024566:-61970 | Msa1418290:CDS |
| GGGAGAAAAGAGCCAAGTAG+AGG | 0.628005 | tig0024566:-62089 | Msa1418290:CDS |
| ACTGGCCAGCAAAATCATGA+TGG | 0.639807 | tig0024566:-59410 | Msa1418290:CDS |
| TCGTCGCCATAAGGTTTGTG+AGG | 0.640730 | tig0024566:-61994 | Msa1418290:CDS |
| GCTTAGCGCGACACAATGAA+CGG | 0.657384 | tig0024566:-59475 | Msa1418290:CDS |
| AAGCAAGGAATACAATAGAG+GGG | 0.716459 | tig0024566:-62229 | Msa1418290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATATATATATTTTA+TGG | + | tig0024566:60180-60199 | None:intergenic | 0.0% |
| !! | TTCAATATAATTATATTTGT+CGG | + | tig0024566:59784-59803 | None:intergenic | 10.0% |
| !!! | AATTTAAGTTTTAAAACAAT+GGG | + | tig0024566:59982-60001 | None:intergenic | 10.0% |
| !!! | AAATTTAAGTTTTAAAACAA+TGG | + | tig0024566:59983-60002 | None:intergenic | 10.0% |
| !! | TATTATAATCAAATAGTTTA+TGG | + | tig0024566:60248-60267 | None:intergenic | 10.0% |
| !! | ATAAACTATTTGATTATAAT+AGG | - | tig0024566:60247-60266 | Msa1418290:intron | 10.0% |
| !!! | ACTTATTATTTTTATAGTTT+AGG | - | tig0024566:60369-60388 | Msa1418290:intron | 10.0% |
| !!! | CTTATTATTTTTATAGTTTA+GGG | - | tig0024566:60370-60389 | Msa1418290:intron | 10.0% |
| !!! | TTTCAAATATTTTTTTTACA+GGG | + | tig0024566:61105-61124 | None:intergenic | 10.0% |
| !!! | ATTTCAAATATTTTTTTTAC+AGG | + | tig0024566:61106-61125 | None:intergenic | 10.0% |
| !!! | TTTCAAATATTTTTTTTACA+GGG | + | tig0024566:61105-61124 | None:intergenic | 10.0% |
| !!! | ATTTCAAATATTTTTTTTAC+AGG | + | tig0024566:61106-61125 | None:intergenic | 10.0% |
| !!! | TTAAAACAATTTTTTTTACA+GGG | + | tig0024566:61161-61180 | None:intergenic | 10.0% |
| !!! | TTTAAAACAATTTTTTTTAC+AGG | + | tig0024566:61162-61181 | None:intergenic | 10.0% |
| !!! | ATTAGTTTTTTTTTAAAATC+TGG | - | tig0024566:61442-61461 | Msa1418290:intron | 10.0% |
| !!! | AAAAAAAATTTGTTTGAAAA+AGG | + | tig0024566:61778-61797 | None:intergenic | 10.0% |
| !!! | TTTCAAATTTTTATTTTTAC+AGG | - | tig0024566:61809-61828 | Msa1418290:intron | 10.0% |
| !!! | TTCAAATTTTTATTTTTACA+GGG | - | tig0024566:61810-61829 | Msa1418290:intron | 10.0% |
| !!! | AAAAATCTGTTTTATTAGTT+GGG | - | tig0024566:60659-60678 | Msa1418290:intron | 15.0% |
| !!! | AAAAAACGTTTTTTATTATG+TGG | + | tig0024566:61282-61301 | None:intergenic | 15.0% |
| !! | ATATGATCGAAAAAATTATT+TGG | + | tig0024566:61380-61399 | None:intergenic | 15.0% |
| !!! | AGATTTTTTTTTTAATTACG+TGG | - | tig0024566:61689-61708 | Msa1418290:intron | 15.0% |
| !!! | TTCAAACAAATTTTTTTTAC+AGG | - | tig0024566:61780-61799 | Msa1418290:intron | 15.0% |
| !!! | TCAAACAAATTTTTTTTACA+GGG | - | tig0024566:61781-61800 | Msa1418290:intron | 15.0% |
| !!! | ACTCTTTCTTTTATTTGAAT+AGG | - | tig0024566:59892-59911 | Msa1418290:intron | 20.0% |
| !! | ATGCTACTAATTTATATAGA+TGG | + | tig0024566:60052-60071 | None:intergenic | 20.0% |
| !! | GTCTTTAACATTTAATAGTA+TGG | - | tig0024566:60312-60331 | Msa1418290:intron | 20.0% |
| !!! | TGAATATGCTCTTTTTATAT+TGG | - | tig0024566:60449-60468 | Msa1418290:intron | 20.0% |
| !!! | GAATATGCTCTTTTTATATT+GGG | - | tig0024566:60450-60469 | Msa1418290:intron | 20.0% |
| !!! | CAAAAATCTGTTTTATTAGT+TGG | - | tig0024566:60658-60677 | Msa1418290:intron | 20.0% |
| !!! | AAAATCTGTTTTATTAGTTG+GGG | - | tig0024566:60660-60679 | Msa1418290:intron | 20.0% |
| !!! | ACCATTATAAGTATATTTTC+GGG | + | tig0024566:60777-60796 | None:intergenic | 20.0% |
| !!! | CACCATTATAAGTATATTTT+CGG | + | tig0024566:60778-60797 | None:intergenic | 20.0% |
| !!! | AAGTTTTCGAAGTTTTTTTT+CGG | - | tig0024566:61633-61652 | Msa1418290:intron | 20.0% |
| ! | AAAATCAAGTTTACCATCTA+TGG | + | tig0024566:59950-59969 | None:intergenic | 25.0% |
| ! | AAAAAAAAAACACACAAGCA+AGG | + | tig0024566:60100-60119 | None:intergenic | 25.0% |
| !! | TTTTAATACCATGAAGATGA+AGG | + | tig0024566:60553-60572 | None:intergenic | 25.0% |
| ! | TCCCGAAAATATACTTATAA+TGG | - | tig0024566:60773-60792 | Msa1418290:intron | 25.0% |
| ! | CGAAAATATACTTATAATGG+TGG | - | tig0024566:60776-60795 | Msa1418290:intron | 25.0% |
| !!! | ATCTCTAAAACTTAGAGTTT+TGG | + | tig0024566:60843-60862 | None:intergenic | 25.0% |
| ! | AGATATTCTAAATTGAGTCA+AGG | - | tig0024566:60883-60902 | Msa1418290:intron | 25.0% |
| ! | GATATTCTAAATTGAGTCAA+GGG | - | tig0024566:60884-60903 | Msa1418290:intron | 25.0% |
| ! | AAAACTAACCCAAATTACAA+AGG | - | tig0024566:61842-61861 | Msa1418290:intron | 25.0% |
| !! | ATTTTCGTCCTTTGTAATTT+GGG | + | tig0024566:61853-61872 | None:intergenic | 25.0% |
| !!! | CGTCTTTAGTTTTACTTTAA+AGG | + | tig0024566:61886-61905 | None:intergenic | 25.0% |
| !!! | TTGACCTTTTTCACTATATT+AGG | - | tig0024566:61964-61983 | Msa1418290:CDS | 25.0% |
| !!! | ATGGAACATTTCTTTGTTTT+GGG | + | tig0024566:61992-62011 | None:intergenic | 25.0% |
| AGAAATAGAAGTTGAAGAAG+AGG | - | tig0024566:59414-59433 | Msa1418290:CDS | 30.0% | |
| CAACTTTCTACTTGACAAAA+AGG | + | tig0024566:59529-59548 | None:intergenic | 30.0% | |
| ! | TTTTGTCAAGTAGAAAGTTG+TGG | - | tig0024566:59529-59548 | Msa1418290:intron | 30.0% |
| TTCATAAGTTTAGATGACAG+TGG | + | tig0024566:59693-59712 | None:intergenic | 30.0% | |
| TCATCTAAACTTATGAAGCA+CGG | - | tig0024566:59696-59715 | Msa1418290:intron | 30.0% | |
| AGTTTAGATTCTACGAAATG+CGG | + | tig0024566:59875-59894 | None:intergenic | 30.0% | |
| AAAATTCTTGGATCCATTAG+TGG | + | tig0024566:60017-60036 | None:intergenic | 30.0% | |
| ! | TGGATCCAAGAATTTTGAAT+AGG | - | tig0024566:60021-60040 | Msa1418290:intron | 30.0% |
| ! | GGATCCAAGAATTTTGAATA+GGG | - | tig0024566:60022-60041 | Msa1418290:intron | 30.0% |
| ! | GATCCAAGAATTTTGAATAG+GGG | - | tig0024566:60023-60042 | Msa1418290:intron | 30.0% |
| ! | ATCCAAGAATTTTGAATAGG+GGG | - | tig0024566:60024-60043 | Msa1418290:intron | 30.0% |
| TTTGGAAAACCTTTCTTTGT+TGG | + | tig0024566:60514-60533 | None:intergenic | 30.0% | |
| !! | CTAAAACTTAGAGTTTTGGT+TGG | + | tig0024566:60839-60858 | None:intergenic | 30.0% |
| AAAAATTCTCTCTCATCCAT+AGG | - | tig0024566:60994-61013 | Msa1418290:intron | 30.0% | |
| ATTTGTTTGAAAAAGGTCCT+TGG | + | tig0024566:61771-61790 | None:intergenic | 30.0% | |
| ! | GATTTTCGTCCTTTGTAATT+TGG | + | tig0024566:61854-61873 | None:intergenic | 30.0% |
| !!! | TGGAACATTTCTTTGTTTTG+GGG | + | tig0024566:61991-62010 | None:intergenic | 30.0% |
| !! | CATGGAACATTTCTTTGTTT+TGG | + | tig0024566:61993-62012 | None:intergenic | 30.0% |
| TTTCAAATAAGGTGAATGCA+TGG | + | tig0024566:62011-62030 | None:intergenic | 30.0% | |
| CTCATCAAAGGTTTCAAATA+AGG | + | tig0024566:62022-62041 | None:intergenic | 30.0% | |
| ATGAACATAACAAGTAGTTC+TGG | - | tig0024566:62208-62227 | Msa1418290:CDS | 30.0% | |
| GAAGCAAGGAATACAATAGA+GGG | - | tig0024566:59346-59365 | Msa1418290:CDS | 35.0% | |
| AAGCAAGGAATACAATAGAG+GGG | - | tig0024566:59347-59366 | Msa1418290:CDS | 35.0% | |
| AAACATCAGTTGAGAAGGTT+TGG | - | tig0024566:59374-59393 | Msa1418290:CDS | 35.0% | |
| AATAGAAGTTGAAGAAGAGG+AGG | - | tig0024566:59417-59436 | Msa1418290:CDS | 35.0% | |
| GAAGATGATGAGAAGAAGAA+AGG | - | tig0024566:59451-59470 | Msa1418290:CDS | 35.0% | |
| CTTTCTACTTGACAAAAAGG+TGG | + | tig0024566:59526-59545 | None:intergenic | 35.0% | |
| AATGAACCTCACAAACCTTA+TGG | + | tig0024566:59591-59610 | None:intergenic | 35.0% | |
| ATAAGTTTAGATGACAGTGG+AGG | + | tig0024566:59690-59709 | None:intergenic | 35.0% | |
| CATCTATGGTATTCTACTAG+TGG | + | tig0024566:59936-59955 | None:intergenic | 35.0% | |
| CACTAGTAGAATACCATAGA+TGG | - | tig0024566:59934-59953 | Msa1418290:intron | 35.0% | |
| TTGAATCTTGTTGCCACTAA+TGG | - | tig0024566:60001-60020 | Msa1418290:intron | 35.0% | |
| TTAGTTGAGCCAACAAAGAA+AGG | - | tig0024566:60502-60521 | Msa1418290:intron | 35.0% | |
| !! | AACTTGACTCGACTTTTCAT+TGG | + | tig0024566:60624-60643 | None:intergenic | 35.0% |
| !!! | AGTCGAGTCAAGTTAGTTTT+AGG | - | tig0024566:60630-60649 | Msa1418290:intron | 35.0% |
| AGACATATCATCTCAACTCT+TGG | + | tig0024566:60752-60771 | None:intergenic | 35.0% | |
| CGTTACAAAATCAACTTGCA+AGG | + | tig0024566:60811-60830 | None:intergenic | 35.0% | |
| TGCTGAATAATCCTTACCTA+TGG | + | tig0024566:61013-61032 | None:intergenic | 35.0% | |
| TGATAATCGTCCCTGTAATT+TGG | - | tig0024566:61061-61080 | Msa1418290:intron | 35.0% | |
| CAAAACTGGACCAAATTACA+GGG | + | tig0024566:61074-61093 | None:intergenic | 35.0% | |
| TCAAAACTGGACCAAATTAC+AGG | + | tig0024566:61075-61094 | None:intergenic | 35.0% | |
| AATCATCACAAAAGTGGCTA+GGG | + | tig0024566:61190-61209 | None:intergenic | 35.0% | |
| AAATCATCACAAAAGTGGCT+AGG | + | tig0024566:61191-61210 | None:intergenic | 35.0% | |
| !!! | TAGCCACTTTTGTGATGATT+TGG | - | tig0024566:61190-61209 | Msa1418290:intron | 35.0% |
| ATGCCAAATCATCACAAAAG+TGG | + | tig0024566:61196-61215 | None:intergenic | 35.0% | |
| !!! | GGAACATTTCTTTGTTTTGG+GGG | + | tig0024566:61990-62009 | None:intergenic | 35.0% |
| ! | AATCACCATCATGATTTTGC+TGG | + | tig0024566:62174-62193 | None:intergenic | 35.0% |
| ! | AGCAAAATCATGATGGTGAT+TGG | - | tig0024566:62173-62192 | Msa1418290:CDS | 35.0% |
| GGAAGCAAGGAATACAATAG+AGG | - | tig0024566:59345-59364 | Msa1418290:CDS | 40.0% | |
| GAAGCAAACATCAGTTGAGA+AGG | - | tig0024566:59369-59388 | Msa1418290:CDS | 40.0% | |
| !! | AAGAAAGGTGTTTGTGTGAG+TGG | - | tig0024566:59466-59485 | Msa1418290:CDS | 40.0% |
| !! | AGAAAGGTGTTTGTGTGAGT+GGG | - | tig0024566:59467-59486 | Msa1418290:CDS | 40.0% |
| GAAAATCTTCCACCTCTACT+TGG | + | tig0024566:59502-59521 | None:intergenic | 40.0% | |
| ! | TCATTCCAAAGCATCTGTTG+TGG | - | tig0024566:59606-59625 | Msa1418290:intron | 40.0% |
| GATTCTACGAAATGCGGATA+CGG | + | tig0024566:59869-59888 | None:intergenic | 40.0% | |
| !! | CTACTAGTGGAAAGTGCTTA+GGG | + | tig0024566:59923-59942 | None:intergenic | 40.0% |
| !! | TCTACTAGTGGAAAGTGCTT+AGG | + | tig0024566:59924-59943 | None:intergenic | 40.0% |
| TGCCCCCTATTCAAAATTCT+TGG | + | tig0024566:60029-60048 | None:intergenic | 40.0% | |
| ! | TCGACTTTTCATTGGTGTGA+AGG | + | tig0024566:60616-60635 | None:intergenic | 40.0% |
| GAAGTCACTCATGTCACTAT+GGG | - | tig0024566:60682-60701 | Msa1418290:intron | 40.0% | |
| TTCTCTCTCATCCATAGGTA+AGG | - | tig0024566:60999-61018 | Msa1418290:intron | 40.0% | |
| ACAGGGACGAAAATCAAAAC+TGG | + | tig0024566:61827-61846 | None:intergenic | 40.0% | |
| !! | ACTTCTGATCTGATTTGGCA+TGG | + | tig0024566:61744-61763 | None:intergenic | 40.0% |
| ATGCCAAATCAGATCAGAAG+TGG | - | tig0024566:61743-61762 | Msa1418290:intron | 40.0% | |
| TGCCAAATCAGATCAGAAGT+GGG | - | tig0024566:61744-61763 | Msa1418290:intron | 40.0% | |
| GGGGCCTAATATAGTGAAAA+AGG | + | tig0024566:61971-61990 | None:intergenic | 40.0% | |
| GAAGTTGAAGAAGAGGAGGA+AGG | - | tig0024566:59421-59440 | Msa1418290:CDS | 45.0% | |
| AGAAAAGAGCCAAGTAGAGG+TGG | - | tig0024566:59490-59509 | Msa1418290:CDS | 45.0% | |
| GAGATATCATCGTCGCCATA+AGG | - | tig0024566:59573-59592 | Msa1418290:intron | 45.0% | |
| ! | TTCCAAAGCATCTGTTGTGG+TGG | - | tig0024566:59609-59628 | Msa1418290:intron | 45.0% |
| AACCACCACAACAGATGCTT+TGG | + | tig0024566:59614-59633 | None:intergenic | 45.0% | |
| ! | GGTTTTGCCAACAATGTAGC+AGG | - | tig0024566:59650-59669 | Msa1418290:intron | 45.0% |
| GATCACACCTGCTACATTGT+TGG | + | tig0024566:59660-59679 | None:intergenic | 45.0% | |
| GCACGGACACTTATCGAATT+AGG | - | tig0024566:59713-59732 | Msa1418290:intron | 45.0% | |
| AACGACACATGTCTGACATC+AGG | + | tig0024566:59744-59763 | None:intergenic | 45.0% | |
| ! | TTTCCAAAGAGTGTGAGAGC+AGG | - | tig0024566:60526-60545 | Msa1418290:intron | 45.0% |
| GGAAGTCACTCATGTCACTA+TGG | - | tig0024566:60681-60700 | Msa1418290:intron | 45.0% | |
| ! | AGTTGCTGACTGTGCAACTT+TGG | - | tig0024566:61233-61252 | Msa1418290:intron | 45.0% |
| GCCAAATCAGATCAGAAGTG+GGG | - | tig0024566:61745-61764 | Msa1418290:intron | 45.0% | |
| ACTGGCCAGCAAAATCATGA+TGG | - | tig0024566:62166-62185 | Msa1418290:CDS | 45.0% | |
| !!! | TAAAAAAAATTGTTTTAAAA+TGG | - | tig0024566:61163-61182 | Msa1418290:intron | 5.0% |
| GTTGAAGAAGAGGAGGAAGG+TGG | - | tig0024566:59424-59443 | Msa1418290:CDS | 50.0% | |
| GGGAGAAAAGAGCCAAGTAG+AGG | - | tig0024566:59487-59506 | Msa1418290:CDS | 50.0% | |
| TCGTCGCCATAAGGTTTGTG+AGG | - | tig0024566:59582-59601 | Msa1418290:intron | 50.0% | |
| CATCTGTTGTGGTGGTTGCA+GGG | - | tig0024566:59617-59636 | Msa1418290:intron | 50.0% | |
| TTGTGGTGGTTGCAGGGATA+AGG | - | tig0024566:59623-59642 | Msa1418290:intron | 50.0% | |
| ATCAGTGTCTGTGTCGTGTC+CGG | - | tig0024566:59840-59859 | Msa1418290:intron | 50.0% | |
| GAGCAGGTCCTTCATCTTCA+TGG | - | tig0024566:60542-60561 | Msa1418290:intron | 50.0% | |
| TTGGCATGTTTCTTGCCACG+TGG | - | tig0024566:61209-61228 | Msa1418290:intron | 50.0% | |
| ACTGTGCAACTTTGGCCATG+TGG | - | tig0024566:61241-61260 | Msa1418290:intron | 50.0% | |
| GCCCCACTTCTGATCTGATT+TGG | + | tig0024566:61749-61768 | None:intergenic | 50.0% | |
| AACCTTTGATGAGTGTGCGC+AGG | - | tig0024566:62029-62048 | Msa1418290:CDS | 50.0% | |
| AACCTGCGCACACTCATCAA+AGG | + | tig0024566:62034-62053 | None:intergenic | 50.0% | |
| GCTTAGCGCGACACAATGAA+CGG | - | tig0024566:62101-62120 | Msa1418290:CDS | 50.0% | |
| ACTGCTGGAACTTGCACTGA+AGG | - | tig0024566:62136-62155 | Msa1418290:CDS | 50.0% | |
| GGAACTTGCACTGAAGGAAG+CGG | - | tig0024566:62142-62161 | Msa1418290:CDS | 50.0% | |
| GCATCTGTTGTGGTGGTTGC+AGG | - | tig0024566:59616-59635 | Msa1418290:intron | 55.0% | |
| TGGTTGCAGGGATAAGGCAG+AGG | - | tig0024566:59629-59648 | Msa1418290:intron | 55.0% | |
| CGAAATGCGGATACGGACAC+CGG | + | tig0024566:59862-59881 | None:intergenic | 55.0% | |
| GGACCTGCTCTCACACTCTT+TGG | + | tig0024566:60532-60551 | None:intergenic | 55.0% | |
| TCAGATCAGAAGTGGGGCCA+AGG | - | tig0024566:61751-61770 | Msa1418290:intron | 55.0% | |
| TGCACTGAAGGAAGCGGTAC+TGG | - | tig0024566:62148-62167 | Msa1418290:CDS | 55.0% | |
| CACAGTCAGCAACTGCCACG+TGG | + | tig0024566:61227-61246 | None:intergenic | 60.0% | |
| TTGGCCATGTGGCGATGACG+TGG | - | tig0024566:61252-61271 | Msa1418290:intron | 60.0% | |
| CATGCCACGTCATCGCCACA+TGG | + | tig0024566:61259-61278 | None:intergenic | 60.0% | |
| ACTGCCATGTCAGCGTCACG+TGG | - | tig0024566:61712-61731 | Msa1418290:intron | 60.0% | |
| CTTGCCACGTGACGCTGACA+TGG | + | tig0024566:61719-61738 | None:intergenic | 60.0% | |
| !! | CGGCGTCGTAAAAGCACTGC+TGG | - | tig0024566:62121-62140 | Msa1418290:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024566 | gene | 59343 | 62255 | 59343 | ID=Msa1418290;Name=Msa1418290 |
| tig0024566 | mRNA | 59343 | 62255 | 59343 | ID=Msa1418290-mRNA-1;Parent=Msa1418290;Name=Msa1418290-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|177 |
| tig0024566 | exon | 61927 | 62255 | 61927 | ID=Msa1418290-mRNA-1:exon:280;Parent=Msa1418290-mRNA-1 |
| tig0024566 | exon | 59343 | 59547 | 59343 | ID=Msa1418290-mRNA-1:exon:279;Parent=Msa1418290-mRNA-1 |
| tig0024566 | CDS | 61927 | 62255 | 61927 | ID=Msa1418290-mRNA-1:cds;Parent=Msa1418290-mRNA-1 |
| tig0024566 | CDS | 59343 | 59547 | 59343 | ID=Msa1418290-mRNA-1:cds;Parent=Msa1418290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
