AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1418290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1418290 MtrunA17_Chr2g0317041 91.818 110 9 0 1 110 36 145 1.65e-56 175
Msa1418290 MtrunA17_Chr8g0360361 68.333 120 36 1 60 177 61 180 1.79e-51 163
Msa1418290 MtrunA17_Chr2g0317031 95.522 67 3 0 111 177 9 75 3.00e-42 136
Msa1418290 MtrunA17_Chr2g0282521 60.952 105 39 1 38 140 36 140 3.14e-38 128
Msa1418290 MtrunA17_Chr4g0046991 67.391 92 30 0 48 139 57 148 4.02e-38 128
Msa1418290 MtrunA17_Chr8g0334671 61.765 102 39 0 37 138 160 261 4.76e-36 127
Msa1418290 MtrunA17_Chr3g0122411 64.045 89 32 0 49 137 150 238 8.30e-36 129
Msa1418290 MtrunA17_Chr7g0258471 72.727 77 21 0 61 137 139 215 1.70e-34 125
Msa1418290 MtrunA17_Chr2g0302791 67.442 86 28 0 64 149 139 224 1.73e-34 128
Msa1418290 MtrunA17_Chr7g0270541 67.391 92 30 0 56 147 137 228 3.39e-34 127
Msa1418290 MtrunA17_Chr1g0194121 62.376 101 38 0 49 149 132 232 4.32e-34 127
Msa1418290 MtrunA17_Chr7g0231911 63.158 95 35 0 56 150 141 235 1.02e-33 121
Msa1418290 MtrunA17_Chr2g0308321 59.813 107 42 1 63 169 170 275 1.44e-33 124
Msa1418290 MtrunA17_Chr5g0420051 58.947 95 39 0 62 156 179 273 2.92e-32 119
Msa1418290 MtrunA17_Chr4g0061651 70.667 75 22 0 63 137 122 196 3.66e-32 119
Msa1418290 MtrunA17_Chr1g0162871 70.130 77 23 0 62 138 102 178 3.53e-31 118
Msa1418290 MtrunA17_Chr8g0377401 59.756 82 33 0 61 142 159 240 2.58e-30 111
Msa1418290 MtrunA17_Chr3g0132091 54.839 93 42 0 64 156 73 165 2.72e-30 113
Msa1418290 MtrunA17_Chr8g0377421 42.424 132 74 2 7 137 75 205 2.25e-29 109
Msa1418290 MtrunA17_Chr7g0224821 51.485 101 48 1 63 163 76 175 4.21e-29 110
Msa1418290 MtrunA17_Chr8g0386271 60.714 84 33 0 64 147 99 182 1.05e-28 109
Msa1418290 MtrunA17_Chr2g0286661 55.405 74 33 0 64 137 103 176 1.01e-23 97.1
Msa1418290 MtrunA17_Chr1g0175031 62.963 54 20 0 57 110 67 120 5.21e-17 73.6
Msa1418290 MtrunA17_Chr8g0377431 56.897 58 25 0 62 119 149 206 5.04e-16 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1418290 AT1G53160.3 63.551 107 36 2 50 156 42 145 5.41e-39 131
Msa1418290 AT1G53160.2 65.049 103 33 2 54 156 46 145 9.50e-39 130
Msa1418290 AT1G53160.1 65.049 103 33 2 54 156 46 145 9.50e-39 130
Msa1418290 AT3G15270.1 51.351 148 65 2 7 148 1 147 1.51e-38 130
Msa1418290 AT1G02065.1 61.321 106 37 2 50 151 171 276 9.16e-37 130
Msa1418290 AT2G33810.1 71.250 80 23 0 60 139 50 129 6.82e-36 122
Msa1418290 AT1G69170.1 56.731 104 45 0 34 137 94 197 2.99e-35 127
Msa1418290 AT3G60030.1 62.136 103 34 2 64 166 127 224 1.26e-34 129
Msa1418290 AT1G20980.1 60.784 102 38 1 54 155 112 211 8.57e-34 126
Msa1418290 AT2G42200.1 68.675 83 26 0 62 144 72 154 1.85e-33 122
Msa1418290 AT2G47070.1 55.963 109 46 1 64 172 106 212 8.68e-33 123
Msa1418290 AT5G43270.3 61.798 89 34 0 58 146 163 251 4.17e-32 119
Msa1418290 AT5G43270.1 61.798 89 34 0 58 146 163 251 4.17e-32 119
Msa1418290 AT5G43270.2 61.798 89 34 0 58 146 163 251 4.17e-32 119
Msa1418290 AT1G76580.1 54.717 106 47 1 62 167 112 216 9.92e-32 120
Msa1418290 AT1G76580.3 54.717 106 47 1 62 167 112 216 4.95e-31 118
Msa1418290 AT1G76580.2 54.717 106 47 1 62 167 112 216 5.70e-31 118
Msa1418290 AT3G57920.1 67.089 79 26 0 64 142 59 137 6.06e-31 115
Msa1418290 AT1G27370.6 57.143 91 39 0 47 137 159 249 3.89e-30 112
Msa1418290 AT1G27370.1 57.143 91 39 0 47 137 159 249 1.11e-29 112
Msa1418290 AT1G27370.5 57.143 91 39 0 47 137 159 249 1.11e-29 112
Msa1418290 AT1G27370.3 57.143 91 39 0 47 137 159 249 1.11e-29 112
Msa1418290 AT1G27370.2 57.143 91 39 0 47 137 159 249 1.11e-29 112
Msa1418290 AT1G27370.4 57.143 91 39 0 47 137 159 249 1.11e-29 112
Msa1418290 AT1G27370.7 57.143 91 39 0 47 137 159 249 1.11e-29 112
Msa1418290 AT5G50570.1 63.158 76 28 0 62 137 99 174 7.77e-29 109
Msa1418290 AT5G50570.2 63.158 76 28 0 62 137 99 174 7.77e-29 109
Msa1418290 AT5G50670.1 63.158 76 28 0 62 137 99 174 7.77e-29 109
Msa1418290 AT5G50670.2 63.158 76 28 0 62 137 99 174 7.77e-29 109
Msa1418290 AT1G27360.2 60.976 82 32 0 56 137 167 248 9.01e-29 110
Msa1418290 AT1G27360.1 60.976 82 32 0 56 137 167 248 9.01e-29 110
Msa1418290 AT1G27360.3 60.976 82 32 0 56 137 167 248 9.01e-29 110
Msa1418290 AT1G27360.4 60.976 82 32 0 56 137 167 248 9.01e-29 110
Msa1418290 AT5G18830.2 47.368 95 47 1 64 155 138 232 6.64e-22 92.4
Msa1418290 AT5G18830.1 47.368 95 47 1 64 155 138 232 6.75e-22 92.4
Msa1418290 AT5G18830.3 47.368 95 47 1 64 155 138 232 7.31e-22 92.0
Msa1418290 AT1G02065.2 60.811 74 24 2 50 118 171 244 1.39e-21 88.6
Msa1418290 AT2G47070.2 74.510 51 13 0 88 138 1 51 6.99e-20 86.7

Find 36 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTTCTACTTGACAAAA+AGG 0.293853 tig0024566:+62050 None:intergenic
GCATCTGTTGTGGTGGTTGC+AGG 0.368915 tig0024566:-61960 Msa1418290:CDS
AATGAACCTCACAAACCTTA+TGG 0.389353 tig0024566:+61988 None:intergenic
AAACATCAGTTGAGAAGGTT+TGG 0.391376 tig0024566:-62202 Msa1418290:CDS
GATCACACCTGCTACATTGT+TGG 0.396569 tig0024566:+61919 None:intergenic
ATGAACATAACAAGTAGTTC+TGG 0.412406 tig0024566:-59368 Msa1418290:CDS
AGCAAAATCATGATGGTGAT+TGG 0.426111 tig0024566:-59403 Msa1418290:CDS
TGCACTGAAGGAAGCGGTAC+TGG 0.443322 tig0024566:-59428 Msa1418290:CDS
AAGAAAGGTGTTTGTGTGAG+TGG 0.453403 tig0024566:-62110 Msa1418290:CDS
AACCACCACAACAGATGCTT+TGG 0.458273 tig0024566:+61965 None:intergenic
TTGTGGTGGTTGCAGGGATA+AGG 0.463071 tig0024566:-61953 Msa1418290:CDS
CGGCGTCGTAAAAGCACTGC+TGG 0.466987 tig0024566:-59455 Msa1418290:CDS
AGAAATAGAAGTTGAAGAAG+AGG 0.475722 tig0024566:-62162 Msa1418290:CDS
GAAAATCTTCCACCTCTACT+TGG 0.489950 tig0024566:+62077 None:intergenic
GAGATATCATCGTCGCCATA+AGG 0.496552 tig0024566:-62003 Msa1418290:CDS
GGAAGCAAGGAATACAATAG+AGG 0.502654 tig0024566:-62231 Msa1418290:CDS
GAAGCAAGGAATACAATAGA+GGG 0.522960 tig0024566:-62230 Msa1418290:CDS
GTTGAAGAAGAGGAGGAAGG+TGG 0.527678 tig0024566:-62152 Msa1418290:CDS
ACTGCTGGAACTTGCACTGA+AGG 0.529046 tig0024566:-59440 Msa1418290:CDS
GAAGTTGAAGAAGAGGAGGA+AGG 0.550030 tig0024566:-62155 Msa1418290:CDS
AATAGAAGTTGAAGAAGAGG+AGG 0.552525 tig0024566:-62159 Msa1418290:CDS
AGAAAGGTGTTTGTGTGAGT+GGG 0.554222 tig0024566:-62109 Msa1418290:CDS
TTCCAAAGCATCTGTTGTGG+TGG 0.554775 tig0024566:-61967 Msa1418290:CDS
GAAGATGATGAGAAGAAGAA+AGG 0.566806 tig0024566:-62125 Msa1418290:CDS
GAAGCAAACATCAGTTGAGA+AGG 0.569996 tig0024566:-62207 Msa1418290:CDS
AGAAAAGAGCCAAGTAGAGG+TGG 0.571945 tig0024566:-62086 Msa1418290:CDS
TGGTTGCAGGGATAAGGCAG+AGG 0.586383 tig0024566:-61947 Msa1418290:CDS
GGAACTTGCACTGAAGGAAG+CGG 0.610870 tig0024566:-59434 Msa1418290:CDS
CATCTGTTGTGGTGGTTGCA+GGG 0.612833 tig0024566:-61959 Msa1418290:CDS
CATAGTACACAATGGAAGCA+AGG 0.613876 tig0024566:-62244 None:intergenic
TCATTCCAAAGCATCTGTTG+TGG 0.621345 tig0024566:-61970 Msa1418290:CDS
GGGAGAAAAGAGCCAAGTAG+AGG 0.628005 tig0024566:-62089 Msa1418290:CDS
ACTGGCCAGCAAAATCATGA+TGG 0.639807 tig0024566:-59410 Msa1418290:CDS
TCGTCGCCATAAGGTTTGTG+AGG 0.640730 tig0024566:-61994 Msa1418290:CDS
GCTTAGCGCGACACAATGAA+CGG 0.657384 tig0024566:-59475 Msa1418290:CDS
AAGCAAGGAATACAATAGAG+GGG 0.716459 tig0024566:-62229 Msa1418290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATATATATATATTTTA+TGG + tig0024566:60180-60199 None:intergenic 0.0%
!! TTCAATATAATTATATTTGT+CGG + tig0024566:59784-59803 None:intergenic 10.0%
!!! AATTTAAGTTTTAAAACAAT+GGG + tig0024566:59982-60001 None:intergenic 10.0%
!!! AAATTTAAGTTTTAAAACAA+TGG + tig0024566:59983-60002 None:intergenic 10.0%
!! TATTATAATCAAATAGTTTA+TGG + tig0024566:60248-60267 None:intergenic 10.0%
!! ATAAACTATTTGATTATAAT+AGG - tig0024566:60247-60266 Msa1418290:intron 10.0%
!!! ACTTATTATTTTTATAGTTT+AGG - tig0024566:60369-60388 Msa1418290:intron 10.0%
!!! CTTATTATTTTTATAGTTTA+GGG - tig0024566:60370-60389 Msa1418290:intron 10.0%
!!! TTTCAAATATTTTTTTTACA+GGG + tig0024566:61105-61124 None:intergenic 10.0%
!!! ATTTCAAATATTTTTTTTAC+AGG + tig0024566:61106-61125 None:intergenic 10.0%
!!! TTTCAAATATTTTTTTTACA+GGG + tig0024566:61105-61124 None:intergenic 10.0%
!!! ATTTCAAATATTTTTTTTAC+AGG + tig0024566:61106-61125 None:intergenic 10.0%
!!! TTAAAACAATTTTTTTTACA+GGG + tig0024566:61161-61180 None:intergenic 10.0%
!!! TTTAAAACAATTTTTTTTAC+AGG + tig0024566:61162-61181 None:intergenic 10.0%
!!! ATTAGTTTTTTTTTAAAATC+TGG - tig0024566:61442-61461 Msa1418290:intron 10.0%
!!! AAAAAAAATTTGTTTGAAAA+AGG + tig0024566:61778-61797 None:intergenic 10.0%
!!! TTTCAAATTTTTATTTTTAC+AGG - tig0024566:61809-61828 Msa1418290:intron 10.0%
!!! TTCAAATTTTTATTTTTACA+GGG - tig0024566:61810-61829 Msa1418290:intron 10.0%
!!! AAAAATCTGTTTTATTAGTT+GGG - tig0024566:60659-60678 Msa1418290:intron 15.0%
!!! AAAAAACGTTTTTTATTATG+TGG + tig0024566:61282-61301 None:intergenic 15.0%
!! ATATGATCGAAAAAATTATT+TGG + tig0024566:61380-61399 None:intergenic 15.0%
!!! AGATTTTTTTTTTAATTACG+TGG - tig0024566:61689-61708 Msa1418290:intron 15.0%
!!! TTCAAACAAATTTTTTTTAC+AGG - tig0024566:61780-61799 Msa1418290:intron 15.0%
!!! TCAAACAAATTTTTTTTACA+GGG - tig0024566:61781-61800 Msa1418290:intron 15.0%
!!! ACTCTTTCTTTTATTTGAAT+AGG - tig0024566:59892-59911 Msa1418290:intron 20.0%
!! ATGCTACTAATTTATATAGA+TGG + tig0024566:60052-60071 None:intergenic 20.0%
!! GTCTTTAACATTTAATAGTA+TGG - tig0024566:60312-60331 Msa1418290:intron 20.0%
!!! TGAATATGCTCTTTTTATAT+TGG - tig0024566:60449-60468 Msa1418290:intron 20.0%
!!! GAATATGCTCTTTTTATATT+GGG - tig0024566:60450-60469 Msa1418290:intron 20.0%
!!! CAAAAATCTGTTTTATTAGT+TGG - tig0024566:60658-60677 Msa1418290:intron 20.0%
!!! AAAATCTGTTTTATTAGTTG+GGG - tig0024566:60660-60679 Msa1418290:intron 20.0%
!!! ACCATTATAAGTATATTTTC+GGG + tig0024566:60777-60796 None:intergenic 20.0%
!!! CACCATTATAAGTATATTTT+CGG + tig0024566:60778-60797 None:intergenic 20.0%
!!! AAGTTTTCGAAGTTTTTTTT+CGG - tig0024566:61633-61652 Msa1418290:intron 20.0%
! AAAATCAAGTTTACCATCTA+TGG + tig0024566:59950-59969 None:intergenic 25.0%
! AAAAAAAAAACACACAAGCA+AGG + tig0024566:60100-60119 None:intergenic 25.0%
!! TTTTAATACCATGAAGATGA+AGG + tig0024566:60553-60572 None:intergenic 25.0%
! TCCCGAAAATATACTTATAA+TGG - tig0024566:60773-60792 Msa1418290:intron 25.0%
! CGAAAATATACTTATAATGG+TGG - tig0024566:60776-60795 Msa1418290:intron 25.0%
!!! ATCTCTAAAACTTAGAGTTT+TGG + tig0024566:60843-60862 None:intergenic 25.0%
! AGATATTCTAAATTGAGTCA+AGG - tig0024566:60883-60902 Msa1418290:intron 25.0%
! GATATTCTAAATTGAGTCAA+GGG - tig0024566:60884-60903 Msa1418290:intron 25.0%
! AAAACTAACCCAAATTACAA+AGG - tig0024566:61842-61861 Msa1418290:intron 25.0%
!! ATTTTCGTCCTTTGTAATTT+GGG + tig0024566:61853-61872 None:intergenic 25.0%
!!! CGTCTTTAGTTTTACTTTAA+AGG + tig0024566:61886-61905 None:intergenic 25.0%
!!! TTGACCTTTTTCACTATATT+AGG - tig0024566:61964-61983 Msa1418290:CDS 25.0%
!!! ATGGAACATTTCTTTGTTTT+GGG + tig0024566:61992-62011 None:intergenic 25.0%
AGAAATAGAAGTTGAAGAAG+AGG - tig0024566:59414-59433 Msa1418290:CDS 30.0%
CAACTTTCTACTTGACAAAA+AGG + tig0024566:59529-59548 None:intergenic 30.0%
! TTTTGTCAAGTAGAAAGTTG+TGG - tig0024566:59529-59548 Msa1418290:intron 30.0%
TTCATAAGTTTAGATGACAG+TGG + tig0024566:59693-59712 None:intergenic 30.0%
TCATCTAAACTTATGAAGCA+CGG - tig0024566:59696-59715 Msa1418290:intron 30.0%
AGTTTAGATTCTACGAAATG+CGG + tig0024566:59875-59894 None:intergenic 30.0%
AAAATTCTTGGATCCATTAG+TGG + tig0024566:60017-60036 None:intergenic 30.0%
! TGGATCCAAGAATTTTGAAT+AGG - tig0024566:60021-60040 Msa1418290:intron 30.0%
! GGATCCAAGAATTTTGAATA+GGG - tig0024566:60022-60041 Msa1418290:intron 30.0%
! GATCCAAGAATTTTGAATAG+GGG - tig0024566:60023-60042 Msa1418290:intron 30.0%
! ATCCAAGAATTTTGAATAGG+GGG - tig0024566:60024-60043 Msa1418290:intron 30.0%
TTTGGAAAACCTTTCTTTGT+TGG + tig0024566:60514-60533 None:intergenic 30.0%
!! CTAAAACTTAGAGTTTTGGT+TGG + tig0024566:60839-60858 None:intergenic 30.0%
AAAAATTCTCTCTCATCCAT+AGG - tig0024566:60994-61013 Msa1418290:intron 30.0%
ATTTGTTTGAAAAAGGTCCT+TGG + tig0024566:61771-61790 None:intergenic 30.0%
! GATTTTCGTCCTTTGTAATT+TGG + tig0024566:61854-61873 None:intergenic 30.0%
!!! TGGAACATTTCTTTGTTTTG+GGG + tig0024566:61991-62010 None:intergenic 30.0%
!! CATGGAACATTTCTTTGTTT+TGG + tig0024566:61993-62012 None:intergenic 30.0%
TTTCAAATAAGGTGAATGCA+TGG + tig0024566:62011-62030 None:intergenic 30.0%
CTCATCAAAGGTTTCAAATA+AGG + tig0024566:62022-62041 None:intergenic 30.0%
ATGAACATAACAAGTAGTTC+TGG - tig0024566:62208-62227 Msa1418290:CDS 30.0%
GAAGCAAGGAATACAATAGA+GGG - tig0024566:59346-59365 Msa1418290:CDS 35.0%
AAGCAAGGAATACAATAGAG+GGG - tig0024566:59347-59366 Msa1418290:CDS 35.0%
AAACATCAGTTGAGAAGGTT+TGG - tig0024566:59374-59393 Msa1418290:CDS 35.0%
AATAGAAGTTGAAGAAGAGG+AGG - tig0024566:59417-59436 Msa1418290:CDS 35.0%
GAAGATGATGAGAAGAAGAA+AGG - tig0024566:59451-59470 Msa1418290:CDS 35.0%
CTTTCTACTTGACAAAAAGG+TGG + tig0024566:59526-59545 None:intergenic 35.0%
AATGAACCTCACAAACCTTA+TGG + tig0024566:59591-59610 None:intergenic 35.0%
ATAAGTTTAGATGACAGTGG+AGG + tig0024566:59690-59709 None:intergenic 35.0%
CATCTATGGTATTCTACTAG+TGG + tig0024566:59936-59955 None:intergenic 35.0%
CACTAGTAGAATACCATAGA+TGG - tig0024566:59934-59953 Msa1418290:intron 35.0%
TTGAATCTTGTTGCCACTAA+TGG - tig0024566:60001-60020 Msa1418290:intron 35.0%
TTAGTTGAGCCAACAAAGAA+AGG - tig0024566:60502-60521 Msa1418290:intron 35.0%
!! AACTTGACTCGACTTTTCAT+TGG + tig0024566:60624-60643 None:intergenic 35.0%
!!! AGTCGAGTCAAGTTAGTTTT+AGG - tig0024566:60630-60649 Msa1418290:intron 35.0%
AGACATATCATCTCAACTCT+TGG + tig0024566:60752-60771 None:intergenic 35.0%
CGTTACAAAATCAACTTGCA+AGG + tig0024566:60811-60830 None:intergenic 35.0%
TGCTGAATAATCCTTACCTA+TGG + tig0024566:61013-61032 None:intergenic 35.0%
TGATAATCGTCCCTGTAATT+TGG - tig0024566:61061-61080 Msa1418290:intron 35.0%
CAAAACTGGACCAAATTACA+GGG + tig0024566:61074-61093 None:intergenic 35.0%
TCAAAACTGGACCAAATTAC+AGG + tig0024566:61075-61094 None:intergenic 35.0%
AATCATCACAAAAGTGGCTA+GGG + tig0024566:61190-61209 None:intergenic 35.0%
AAATCATCACAAAAGTGGCT+AGG + tig0024566:61191-61210 None:intergenic 35.0%
!!! TAGCCACTTTTGTGATGATT+TGG - tig0024566:61190-61209 Msa1418290:intron 35.0%
ATGCCAAATCATCACAAAAG+TGG + tig0024566:61196-61215 None:intergenic 35.0%
!!! GGAACATTTCTTTGTTTTGG+GGG + tig0024566:61990-62009 None:intergenic 35.0%
! AATCACCATCATGATTTTGC+TGG + tig0024566:62174-62193 None:intergenic 35.0%
! AGCAAAATCATGATGGTGAT+TGG - tig0024566:62173-62192 Msa1418290:CDS 35.0%
GGAAGCAAGGAATACAATAG+AGG - tig0024566:59345-59364 Msa1418290:CDS 40.0%
GAAGCAAACATCAGTTGAGA+AGG - tig0024566:59369-59388 Msa1418290:CDS 40.0%
!! AAGAAAGGTGTTTGTGTGAG+TGG - tig0024566:59466-59485 Msa1418290:CDS 40.0%
!! AGAAAGGTGTTTGTGTGAGT+GGG - tig0024566:59467-59486 Msa1418290:CDS 40.0%
GAAAATCTTCCACCTCTACT+TGG + tig0024566:59502-59521 None:intergenic 40.0%
! TCATTCCAAAGCATCTGTTG+TGG - tig0024566:59606-59625 Msa1418290:intron 40.0%
GATTCTACGAAATGCGGATA+CGG + tig0024566:59869-59888 None:intergenic 40.0%
!! CTACTAGTGGAAAGTGCTTA+GGG + tig0024566:59923-59942 None:intergenic 40.0%
!! TCTACTAGTGGAAAGTGCTT+AGG + tig0024566:59924-59943 None:intergenic 40.0%
TGCCCCCTATTCAAAATTCT+TGG + tig0024566:60029-60048 None:intergenic 40.0%
! TCGACTTTTCATTGGTGTGA+AGG + tig0024566:60616-60635 None:intergenic 40.0%
GAAGTCACTCATGTCACTAT+GGG - tig0024566:60682-60701 Msa1418290:intron 40.0%
TTCTCTCTCATCCATAGGTA+AGG - tig0024566:60999-61018 Msa1418290:intron 40.0%
ACAGGGACGAAAATCAAAAC+TGG + tig0024566:61827-61846 None:intergenic 40.0%
!! ACTTCTGATCTGATTTGGCA+TGG + tig0024566:61744-61763 None:intergenic 40.0%
ATGCCAAATCAGATCAGAAG+TGG - tig0024566:61743-61762 Msa1418290:intron 40.0%
TGCCAAATCAGATCAGAAGT+GGG - tig0024566:61744-61763 Msa1418290:intron 40.0%
GGGGCCTAATATAGTGAAAA+AGG + tig0024566:61971-61990 None:intergenic 40.0%
GAAGTTGAAGAAGAGGAGGA+AGG - tig0024566:59421-59440 Msa1418290:CDS 45.0%
AGAAAAGAGCCAAGTAGAGG+TGG - tig0024566:59490-59509 Msa1418290:CDS 45.0%
GAGATATCATCGTCGCCATA+AGG - tig0024566:59573-59592 Msa1418290:intron 45.0%
! TTCCAAAGCATCTGTTGTGG+TGG - tig0024566:59609-59628 Msa1418290:intron 45.0%
AACCACCACAACAGATGCTT+TGG + tig0024566:59614-59633 None:intergenic 45.0%
! GGTTTTGCCAACAATGTAGC+AGG - tig0024566:59650-59669 Msa1418290:intron 45.0%
GATCACACCTGCTACATTGT+TGG + tig0024566:59660-59679 None:intergenic 45.0%
GCACGGACACTTATCGAATT+AGG - tig0024566:59713-59732 Msa1418290:intron 45.0%
AACGACACATGTCTGACATC+AGG + tig0024566:59744-59763 None:intergenic 45.0%
! TTTCCAAAGAGTGTGAGAGC+AGG - tig0024566:60526-60545 Msa1418290:intron 45.0%
GGAAGTCACTCATGTCACTA+TGG - tig0024566:60681-60700 Msa1418290:intron 45.0%
! AGTTGCTGACTGTGCAACTT+TGG - tig0024566:61233-61252 Msa1418290:intron 45.0%
GCCAAATCAGATCAGAAGTG+GGG - tig0024566:61745-61764 Msa1418290:intron 45.0%
ACTGGCCAGCAAAATCATGA+TGG - tig0024566:62166-62185 Msa1418290:CDS 45.0%
!!! TAAAAAAAATTGTTTTAAAA+TGG - tig0024566:61163-61182 Msa1418290:intron 5.0%
GTTGAAGAAGAGGAGGAAGG+TGG - tig0024566:59424-59443 Msa1418290:CDS 50.0%
GGGAGAAAAGAGCCAAGTAG+AGG - tig0024566:59487-59506 Msa1418290:CDS 50.0%
TCGTCGCCATAAGGTTTGTG+AGG - tig0024566:59582-59601 Msa1418290:intron 50.0%
CATCTGTTGTGGTGGTTGCA+GGG - tig0024566:59617-59636 Msa1418290:intron 50.0%
TTGTGGTGGTTGCAGGGATA+AGG - tig0024566:59623-59642 Msa1418290:intron 50.0%
ATCAGTGTCTGTGTCGTGTC+CGG - tig0024566:59840-59859 Msa1418290:intron 50.0%
GAGCAGGTCCTTCATCTTCA+TGG - tig0024566:60542-60561 Msa1418290:intron 50.0%
TTGGCATGTTTCTTGCCACG+TGG - tig0024566:61209-61228 Msa1418290:intron 50.0%
ACTGTGCAACTTTGGCCATG+TGG - tig0024566:61241-61260 Msa1418290:intron 50.0%
GCCCCACTTCTGATCTGATT+TGG + tig0024566:61749-61768 None:intergenic 50.0%
AACCTTTGATGAGTGTGCGC+AGG - tig0024566:62029-62048 Msa1418290:CDS 50.0%
AACCTGCGCACACTCATCAA+AGG + tig0024566:62034-62053 None:intergenic 50.0%
GCTTAGCGCGACACAATGAA+CGG - tig0024566:62101-62120 Msa1418290:CDS 50.0%
ACTGCTGGAACTTGCACTGA+AGG - tig0024566:62136-62155 Msa1418290:CDS 50.0%
GGAACTTGCACTGAAGGAAG+CGG - tig0024566:62142-62161 Msa1418290:CDS 50.0%
GCATCTGTTGTGGTGGTTGC+AGG - tig0024566:59616-59635 Msa1418290:intron 55.0%
TGGTTGCAGGGATAAGGCAG+AGG - tig0024566:59629-59648 Msa1418290:intron 55.0%
CGAAATGCGGATACGGACAC+CGG + tig0024566:59862-59881 None:intergenic 55.0%
GGACCTGCTCTCACACTCTT+TGG + tig0024566:60532-60551 None:intergenic 55.0%
TCAGATCAGAAGTGGGGCCA+AGG - tig0024566:61751-61770 Msa1418290:intron 55.0%
TGCACTGAAGGAAGCGGTAC+TGG - tig0024566:62148-62167 Msa1418290:CDS 55.0%
CACAGTCAGCAACTGCCACG+TGG + tig0024566:61227-61246 None:intergenic 60.0%
TTGGCCATGTGGCGATGACG+TGG - tig0024566:61252-61271 Msa1418290:intron 60.0%
CATGCCACGTCATCGCCACA+TGG + tig0024566:61259-61278 None:intergenic 60.0%
ACTGCCATGTCAGCGTCACG+TGG - tig0024566:61712-61731 Msa1418290:intron 60.0%
CTTGCCACGTGACGCTGACA+TGG + tig0024566:61719-61738 None:intergenic 60.0%
!! CGGCGTCGTAAAAGCACTGC+TGG - tig0024566:62121-62140 Msa1418290:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0024566 gene 59343 62255 59343 ID=Msa1418290;Name=Msa1418290
tig0024566 mRNA 59343 62255 59343 ID=Msa1418290-mRNA-1;Parent=Msa1418290;Name=Msa1418290-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|177
tig0024566 exon 61927 62255 61927 ID=Msa1418290-mRNA-1:exon:280;Parent=Msa1418290-mRNA-1
tig0024566 exon 59343 59547 59343 ID=Msa1418290-mRNA-1:exon:279;Parent=Msa1418290-mRNA-1
tig0024566 CDS 61927 62255 61927 ID=Msa1418290-mRNA-1:cds;Parent=Msa1418290-mRNA-1
tig0024566 CDS 59343 59547 59343 ID=Msa1418290-mRNA-1:cds;Parent=Msa1418290-mRNA-1
Gene Sequence

>Msa1418290

ATGGAAGCAAGGAATACAATAGAGGGGAAGCAAACATCAGTTGAGAAGGTTTGGAAAGACATCTTATTTGAAGAAATAGAAGTTGAAGAAGAGGAGGAAGGTGGTGTTGAAGATGATGAGAAGAAGAAAGGTGTTTGTGTGAGTGGGAGAAAAGAGCCAAGTAGAGGTGGAAGATTTTCTCCACCTTTTTGTCAAGTAGAAAGTTGTGGAGCTGATTTAACTTTTGCAAAGAGATATCATCGTCGCCATAAGGTTTGTGAGGTTCATTCCAAAGCATCTGTTGTGGTGGTTGCAGGGATAAGGCAGAGGTTTTGCCAACAATGTAGCAGGTTTCATGAGCTTGCAGAGTTTGATGAATCGAAAAGAAGCTGTCGAAGACGCTTAGCGCGACACAATGAACGGCGTCGTAAAAGCACTGCTGGAACTTGCACTGAAGGAAGCGGTACTGGCCAGCAAAATCATGATGGTGATTGGAGACAAATTCATATGAACATAACAAGTAGTTCTGGTCACGATTTTCTGAATTTCAGATGA

Protein sequence

>Msa1418290

MEARNTIEGKQTSVEKVWKDILFEEIEVEEEEEGGVEDDEKKKGVCVSGRKEPSRGGRFSPPFCQVESCGADLTFAKRYHRRHKVCEVHSKASVVVVAGIRQRFCQQCSRFHELAEFDESKRSCRRRLARHNERRRKSTAGTCTEGSGTGQQNHDGDWRQIHMNITSSSGHDFLNFR*