AlfalfaGEDB | Msa1418950

M. sativa cultivar zhongmu-4 / Msa1418950

KEGG: -
GO: GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1418950	sp\|Q7XHI9\|BH084_ARATH	86.316	95	13	0	271	365	231	325	7.35e-53	181

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1418950	G7ICC1	91.218	353	26	3	1	352	1	349	0.0	599

TFs/TRs:

Gene ID	Type	Classification
Msa1418950	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1418950	MtrunA17_Chr1g0152651	91.218	353	26	3	1	352	1	349	0.0	599
Msa1418950	MtrunA17_Chr3g0134741	49.737	380	119	12	1	368	1	320	1.35e-97	293
Msa1418950	MtrunA17_Chr5g0393721	52.821	195	78	5	179	363	120	310	4.17e-51	173
Msa1418950	MtrunA17_Chr1g0207301	50.532	188	74	4	189	363	193	374	2.08e-48	167
Msa1418950	MtrunA17_Chr1g0207311	51.124	178	81	3	190	365	111	284	5.57e-47	161
Msa1418950	MtrunA17_Chr5g0435021	65.000	60	21	0	286	345	227	286	1.50e-22	96.7
Msa1418950	MtrunA17_Chr4g0074161	52.564	78	37	0	263	340	192	269	1.09e-19	89.7
Msa1418950	MtrunA17_Chr8g0384141	66.071	56	19	0	286	341	123	178	8.19e-19	85.1
Msa1418950	MtrunA17_Chr3g0134001	62.963	54	20	0	286	339	180	233	6.85e-18	82.8
Msa1418950	MtrunA17_Chr7g0243041	56.364	55	24	0	284	338	33	87	7.53e-17	77.0
Msa1418950	MtrunA17_Chr1g0190731	56.923	65	28	0	276	340	192	256	8.09e-17	80.9
Msa1418950	MtrunA17_Chr4g0035101	40.517	116	62	3	230	340	94	207	3.89e-15	75.9
Msa1418950	MtrunA17_Chr4g0014771	57.576	66	27	1	276	340	117	182	2.87e-14	70.9
Msa1418950	MtrunA17_Chr3g0144641	38.136	118	67	3	226	340	141	255	7.79e-14	72.4
Msa1418950	MtrunA17_Chr5g0415291	34.307	137	70	3	224	340	40	176	4.87e-13	68.2
Msa1418950	MtrunA17_Chr1g0153241	35.354	99	59	1	261	354	64	162	6.29e-13	68.2
Msa1418950	MtrunA17_Chr5g0421111	35.915	142	75	4	215	340	288	429	1.01e-12	69.3
Msa1418950	MtrunA17_Chr6g0484271	50.769	65	31	1	277	340	155	219	1.16e-12	67.8
Msa1418950	MtrunA17_Chr8g0365941	34.247	146	81	4	201	340	233	369	1.32e-12	68.9
Msa1418950	MtrunA17_Chr8g0339091	52.308	65	30	1	277	340	291	355	1.36e-12	68.9
Msa1418950	MtrunA17_Chr1g0193321	45.455	66	36	0	275	340	460	525	1.43e-12	68.9
Msa1418950	MtrunA17_Chr7g0234761	53.125	64	29	1	278	340	318	381	1.59e-12	68.6
Msa1418950	MtrunA17_Chr8g0363921	49.231	65	32	1	277	340	151	215	1.88e-12	67.0
Msa1418950	MtrunA17_Chr1g0152131	50.769	65	31	1	277	340	260	324	2.07e-12	68.2
Msa1418950	MtrunA17_Chr3g0095391	36.364	99	50	3	279	369	311	404	2.84e-12	67.8
Msa1418950	MtrunA17_Chr1g0174271	54.545	66	29	1	276	340	297	362	2.85e-12	67.4
Msa1418950	MtrunA17_Chr1g0182791	39.506	81	47	1	275	355	315	393	3.43e-12	67.8
Msa1418950	MtrunA17_Chr3g0131771	52.308	65	30	1	277	340	147	211	6.45e-12	65.9
Msa1418950	MtrunA17_Chr4g0032951	53.030	66	30	1	276	340	354	419	6.57e-12	66.6
Msa1418950	MtrunA17_Chr8g0385911	49.231	65	32	1	277	340	145	209	1.43e-11	65.1
Msa1418950	MtrunA17_Chr7g0258181	53.846	65	29	1	278	341	244	308	1.78e-11	64.7
Msa1418950	MtrunA17_Chr1g0213791	50.000	68	33	1	276	342	264	331	2.20e-11	64.3
Msa1418950	MtrunA17_Chr5g0402031	42.188	64	37	0	290	353	118	181	2.58e-11	64.3
Msa1418950	MtrunA17_Chr7g0258161	42.308	78	44	1	264	340	160	237	6.47e-11	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1418950	AT2G14760.1	86.316	95	13	0	271	365	231	325	7.47e-54	181
Msa1418950	AT1G27740.1	63.514	148	45	3	220	367	119	257	9.52e-54	178
Msa1418950	AT4G33880.1	79.612	103	21	0	258	360	247	349	4.07e-53	179
Msa1418950	AT2G14760.3	75.926	108	13	1	271	365	231	338	4.00e-50	171
Msa1418950	AT5G43175.1	56.463	147	63	1	221	367	77	222	1.34e-46	159
Msa1418950	AT1G66470.1	54.255	94	38	2	253	345	174	263	5.70e-25	103
Msa1418950	AT5G37800.1	56.667	90	34	2	257	345	184	269	7.90e-25	103
Msa1418950	AT2G24260.2	56.410	78	31	1	266	340	21	98	8.78e-21	90.9
Msa1418950	AT4G30980.1	46.465	99	47	2	244	340	99	193	1.52e-20	91.3
Msa1418950	AT4G30980.2	46.465	99	47	2	244	340	147	241	2.17e-20	91.7
Msa1418950	AT2G24260.1	56.410	78	31	1	266	340	124	201	2.99e-20	91.3
Msa1418950	AT3G21330.1	62.500	56	21	0	284	339	276	331	6.92e-18	84.7
Msa1418950	AT5G58010.1	56.923	65	28	0	276	340	98	162	1.29e-17	82.8
Msa1418950	AT5G01305.1	51.515	66	29	1	274	336	31	96	9.38e-17	77.8
Msa1418950	AT4G00120.1	46.970	66	34	1	286	351	121	185	9.63e-16	75.5
Msa1418950	AT5G50915.3	51.724	87	38	4	278	361	137	222	4.56e-15	75.1
Msa1418950	AT5G50915.4	51.724	87	38	4	278	361	137	222	4.56e-15	75.1
Msa1418950	AT5G50915.1	51.724	87	38	4	278	361	137	222	4.58e-15	75.1
Msa1418950	AT5G50915.2	51.724	87	38	4	278	361	137	222	4.58e-15	75.1
Msa1418950	AT1G18400.2	53.846	65	29	1	277	340	145	209	7.33e-14	71.2
Msa1418950	AT1G18400.1	54.688	64	28	1	278	340	146	209	1.29e-13	70.5
Msa1418950	AT2G18300.2	31.875	160	92	4	185	340	103	249	1.64e-13	71.2
Msa1418950	AT2G18300.1	31.875	160	92	4	185	340	103	249	1.95e-13	70.9
Msa1418950	AT1G26260.3	36.364	132	74	3	212	340	112	236	2.00e-13	70.9
Msa1418950	AT1G35460.1	54.545	66	29	1	276	340	180	245	2.24e-13	70.1
Msa1418950	AT1G26260.5	36.424	151	86	4	195	340	120	265	2.25e-13	71.2
Msa1418950	AT1G26260.4	36.424	151	86	4	195	340	142	287	2.37e-13	71.2
Msa1418950	AT1G26260.1	36.424	151	86	4	195	340	142	287	2.37e-13	71.2
Msa1418950	AT1G26260.6	36.424	151	86	4	195	340	142	287	2.37e-13	71.2
Msa1418950	AT1G26260.2	36.424	151	86	4	195	340	142	287	2.37e-13	71.2
Msa1418950	AT2G18300.3	31.875	160	92	4	185	340	103	249	2.65e-13	70.9
Msa1418950	AT1G25330.1	46.341	82	43	1	277	357	104	185	4.36e-13	68.6
Msa1418950	AT4G09180.1	52.941	68	31	1	276	342	183	250	4.43e-13	68.9
Msa1418950	AT3G07340.2	34.337	166	83	5	189	340	169	322	4.55e-13	70.5
Msa1418950	AT1G73830.2	40.187	107	60	2	247	352	117	220	4.80e-13	68.9
Msa1418950	AT1G73830.1	40.187	107	60	2	247	352	117	220	4.86e-13	68.9
Msa1418950	AT3G07340.1	34.337	166	83	5	189	340	169	322	4.91e-13	70.5
Msa1418950	AT2G42280.1	55.385	65	28	1	276	339	278	342	2.23e-12	68.2
Msa1418950	AT1G59640.1	49.231	65	32	1	277	340	136	200	2.53e-12	67.0
Msa1418950	AT3G23690.1	37.168	113	54	2	245	340	143	255	2.81e-12	67.8
Msa1418950	AT1G09530.3	37.864	103	58	2	253	349	307	409	2.90e-12	68.2
Msa1418950	AT1G09530.2	37.864	103	58	2	253	349	307	409	2.90e-12	68.2
Msa1418950	AT1G09530.5	37.864	103	58	2	253	349	307	409	2.90e-12	68.2
Msa1418950	AT1G09530.1	37.864	103	58	2	253	349	307	409	2.90e-12	68.2
Msa1418950	AT1G09530.4	37.864	103	58	2	253	349	307	409	2.90e-12	68.2
Msa1418950	AT1G09530.6	37.864	103	58	2	253	349	307	409	2.90e-12	68.2
Msa1418950	AT1G51140.1	52.308	65	30	1	276	339	303	367	3.89e-12	67.4
Msa1418950	AT5G48560.1	52.308	65	30	1	277	340	301	365	3.92e-12	67.8
Msa1418950	AT5G48560.2	53.125	64	29	1	278	340	302	365	4.47e-12	67.4
Msa1418950	AT4G34530.1	50.769	65	31	1	277	340	172	236	5.64e-12	66.6
Msa1418950	AT1G10120.2	51.562	64	30	1	278	340	207	270	5.79e-12	67.0
Msa1418950	AT1G10120.1	51.562	64	30	1	278	340	207	270	5.79e-12	67.0
Msa1418950	AT1G59640.2	49.231	65	32	1	277	340	136	200	7.17e-12	66.2
Msa1418950	AT4G00050.2	41.463	82	43	2	263	344	96	172	1.06e-11	65.5
Msa1418950	AT2G42280.3	54.688	64	28	1	276	338	278	341	1.36e-11	65.5
Msa1418950	AT1G68920.3	50.769	65	31	1	277	340	302	366	1.63e-11	65.9
Msa1418950	AT1G68920.1	50.769	65	31	1	277	340	303	367	1.65e-11	65.9
Msa1418950	AT1G68920.4	50.769	65	31	1	277	340	303	367	1.65e-11	65.9
Msa1418950	AT1G68920.2	50.769	65	31	1	277	340	303	367	1.65e-11	65.9
Msa1418950	AT4G00050.1	41.463	82	43	2	263	344	198	274	2.10e-11	65.5
Msa1418950	AT4G00050.3	41.463	82	43	2	263	344	198	274	2.19e-11	65.1
Msa1418950	AT2G20180.4	46.875	64	34	0	277	340	278	341	3.48e-11	64.7
Msa1418950	AT2G20180.6	46.875	64	34	0	277	340	278	341	3.48e-11	64.7
Msa1418950	AT2G20180.2	46.875	64	34	0	277	340	278	341	3.48e-11	64.7
Msa1418950	AT2G20180.3	46.875	64	34	0	277	340	278	341	3.48e-11	64.7
Msa1418950	AT4G36540.1	47.692	65	33	1	277	340	141	205	3.84e-11	63.9
Msa1418950	AT4G28790.1	39.560	91	52	2	264	354	260	347	3.91e-11	64.7
Msa1418950	AT4G36540.2	47.692	65	33	1	277	340	141	205	3.93e-11	63.9
Msa1418950	AT2G20180.7	46.875	64	34	0	277	340	207	270	4.20e-11	64.3
Msa1418950	AT2G20180.1	46.875	64	34	0	277	340	207	270	4.20e-11	64.3
Msa1418950	AT2G20180.5	46.875	64	34	0	277	340	207	270	4.20e-11	64.3
Msa1418950	AT2G46970.1	32.967	91	56	1	276	361	222	312	5.65e-11	63.9
Msa1418950	AT2G46970.2	32.967	91	56	1	276	361	191	281	5.94e-11	63.9
Msa1418950	AT2G46970.3	32.967	91	56	1	276	361	200	290	6.57e-11	63.9
Msa1418950	AT4G36930.1	39.189	74	45	0	284	357	198	271	7.00e-11	63.5

Find 52 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTCCATTACAATCTCATTA+AGG	0.173245	tig0024656:-34443	None:intergenic
TGCAAGTGATGATCATATTT+TGG	0.179137	tig0024656:+34491	Msa1418950:CDS
GATCAAAATTCACTTCTTCT+AGG	0.206106	tig0024656:+34141	Msa1418950:CDS
GAGAAATATAGTTAGAGTTT+TGG	0.293615	tig0024656:-34263	None:intergenic
TACCCTTGCATATAGACTTT+GGG	0.321694	tig0024656:-35051	None:intergenic
AAGAAATCCCATTCTCCTTC+AGG	0.327986	tig0024656:-34066	None:intergenic
TTCCATTACAATCTCATTAA+GGG	0.348435	tig0024656:-34442	None:intergenic
TATGCACCACTTGCTTATAA+TGG	0.352026	tig0024656:+35605	Msa1418950:CDS
TGGTTATAATACTCAAATAA+TGG	0.360333	tig0024656:+34521	Msa1418950:CDS
ATCAAAATTCACTTCTTCTA+GGG	0.385839	tig0024656:+34142	Msa1418950:CDS
ATTAATAATAGAGGATCAAA+TGG	0.401696	tig0024656:+34912	Msa1418950:CDS
CCTTCAGGGAAAGTACCTAT+AGG	0.408509	tig0024656:-34051	None:intergenic
GGAACTACTCTCAACTCAAA+TGG	0.413988	tig0024656:+34993	Msa1418950:CDS
TTACCCTTGCATATAGACTT+TGG	0.415798	tig0024656:-35052	None:intergenic
TACTTTCCCTGAAGGAGAAT+GGG	0.424302	tig0024656:+34059	Msa1418950:CDS
TGCTTGGTGTGAAGATCAAC+AGG	0.425932	tig0024656:-34546	None:intergenic
TTATTTACTAGTACTTGATC+AGG	0.442578	tig0024656:-34354	None:intergenic
AGTTGCAAATGCAGCTCAAA+AGG	0.443724	tig0024656:+34571	Msa1418950:CDS
AATATTACCTTTGTTCCGTT+CGG	0.447590	tig0024656:-35244	None:intergenic
CTGCATTTGCAACTCATGCT+TGG	0.451532	tig0024656:-34562	None:intergenic
ATCCCTTAATGAGATTGTAA+TGG	0.463322	tig0024656:+34440	Msa1418950:CDS
CTTCTTCTAGGGGAAAATGA+TGG	0.464779	tig0024656:+34153	Msa1418950:CDS
ACAGAAGAGATTAATAATAG+AGG	0.477922	tig0024656:+34903	Msa1418950:CDS
GAACTACTCTCAACTCAAAT+GGG	0.480885	tig0024656:+34994	Msa1418950:CDS
GCTTATAATGGACTTGACCT+TGG	0.488445	tig0024656:+35617	Msa1418950:CDS
AATGCTTCTCAAGAAAATAG+TGG	0.493032	tig0024656:+34969	Msa1418950:CDS
GTACTTTCCCTGAAGGAGAA+TGG	0.496433	tig0024656:+34058	Msa1418950:CDS
TTATAGAATATGGAACCTAT+AGG	0.524720	tig0024656:+34036	None:intergenic
ACCCTTGCATATAGACTTTG+GGG	0.534775	tig0024656:-35050	None:intergenic
ATCCCCAAAGTCTATATGCA+AGG	0.542852	tig0024656:+35048	Msa1418950:CDS
AGAAATCCCATTCTCCTTCA+GGG	0.544452	tig0024656:-34065	None:intergenic
ATTTCAATTATATAGGGCCA+AGG	0.547971	tig0024656:+34819	Msa1418950:intron
TCAAAATTCACTTCTTCTAG+GGG	0.551527	tig0024656:+34143	Msa1418950:CDS
TGAGGTTGAGATTGAGTCCA+AGG	0.556070	tig0024656:-35634	None:intergenic
GAAAGTTGCTAACAATGAAG+AGG	0.569015	tig0024656:+34875	Msa1418950:CDS
ATTACAATCTCATTAAGGGA+TGG	0.572980	tig0024656:-34438	None:intergenic
GAAACTTGATGTGATAGAAG+TGG	0.575721	tig0024656:+34593	Msa1418950:CDS
TATAAGTACAATGCTTGAAG+AGG	0.587398	tig0024656:+35386	Msa1418950:CDS
TATATCTTTGAAGCTCATAG+TGG	0.590762	tig0024656:-35668	None:intergenic
GAAAATGATGGATTGAACAA+TGG	0.593371	tig0024656:+34165	Msa1418950:CDS
TCCCCAAAGTCTATATGCAA+GGG	0.597305	tig0024656:+35049	Msa1418950:CDS
TCTTGTACCGAACGGAACAA+AGG	0.602216	tig0024656:+35237	Msa1418950:CDS
CTCTAGTAGCAACATTTCTG+AGG	0.611763	tig0024656:+34941	Msa1418950:CDS
CCTATAGGTACTTTCCCTGA+AGG	0.620831	tig0024656:+34051	Msa1418950:CDS
AATTTCAGCAGTGCAAAATG+TGG	0.624595	tig0024656:-34196	None:intergenic
TTACAAAATCTTGTACCGAA+CGG	0.632772	tig0024656:+35229	Msa1418950:CDS
AAGGATGCATGAAAATTGCA+AGG	0.634976	tig0024656:+34838	Msa1418950:CDS
ACTTGATGTGATAGAAGTGG+AGG	0.635683	tig0024656:+34596	Msa1418950:CDS
GGGAAGACAAGAGCTAGTAG+AGG	0.635890	tig0024656:+35014	Msa1418950:CDS
TCAAGTCCATTATAAGCAAG+TGG	0.638289	tig0024656:-35611	None:intergenic
GCTTCTCAAGAAAATAGTGG+AGG	0.669375	tig0024656:+34972	Msa1418950:CDS
ATAGTGGTAGAGAACTGTTG+AGG	0.720764	tig0024656:-35652	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTATGATACTTTTTTTATT+TGG	+	tig0024656:35161-35180	Msa1418950:intron	10.0%
!!!	TTTTGTTTTAATATTGAAAT+TGG	+	tig0024656:35281-35300	Msa1418950:intron	10.0%
!!!	TTTATGATACTTTTTTTATT+TGG	+	tig0024656:35161-35180	Msa1418950:intron	10.0%
!!!	TTTTGTTTTAATATTGAAAT+TGG	+	tig0024656:35281-35300	Msa1418950:intron	10.0%
!!	TGGTTATAATACTCAAATAA+TGG	+	tig0024656:34521-34540	Msa1418950:CDS	20.0%
!!!	TTGTTAATTTTTTCTTCAAC+AGG	-	tig0024656:34624-34643	None:intergenic	20.0%
!!!	GTCGTTATTTCAATTATATA+GGG	+	tig0024656:34813-34832	Msa1418950:intron	20.0%
!!	ATTAATAATAGAGGATCAAA+TGG	+	tig0024656:34912-34931	Msa1418950:CDS	20.0%
!!!	TGTTTTAATATTGAAATTGG+TGG	+	tig0024656:35284-35303	Msa1418950:intron	20.0%
!!	TGGTTATAATACTCAAATAA+TGG	+	tig0024656:34521-34540	Msa1418950:CDS	20.0%
!!!	TTGTTAATTTTTTCTTCAAC+AGG	-	tig0024656:34624-34643	None:intergenic	20.0%
!!!	GTCGTTATTTCAATTATATA+GGG	+	tig0024656:34813-34832	Msa1418950:intron	20.0%
!!	ATTAATAATAGAGGATCAAA+TGG	+	tig0024656:34912-34931	Msa1418950:CDS	20.0%
!!!	TGTTTTAATATTGAAATTGG+TGG	+	tig0024656:35284-35303	Msa1418950:intron	20.0%
!	ATCAAAATTCACTTCTTCTA+GGG	+	tig0024656:34142-34161	Msa1418950:CDS	25.0%
!!	GAGAAATATAGTTAGAGTTT+TGG	-	tig0024656:34266-34285	None:intergenic	25.0%
!	TTATTTACTAGTACTTGATC+AGG	-	tig0024656:34357-34376	None:intergenic	25.0%
!!	TATATCCAATGATTTTTGCA+TGG	+	tig0024656:34389-34408	Msa1418950:CDS	25.0%
!	TTCCATTACAATCTCATTAA+GGG	-	tig0024656:34445-34464	None:intergenic	25.0%
!!!	GATCATATTTTGGAGAAAAA+TGG	+	tig0024656:34501-34520	Msa1418950:CDS	25.0%
!!	ATTTTGTTGCTAGTAAGATT+AGG	-	tig0024656:34707-34726	None:intergenic	25.0%
!	ATAAAATTGATCACCATATC+CGG	-	tig0024656:34775-34794	None:intergenic	25.0%
!!	CGTCGTTATTTCAATTATAT+AGG	+	tig0024656:34812-34831	Msa1418950:intron	25.0%
!	ACAGAAGAGATTAATAATAG+AGG	+	tig0024656:34903-34922	Msa1418950:CDS	25.0%
!	GTACAAGAGAATTAATTTCA+TGG	+	tig0024656:35345-35364	Msa1418950:intron	25.0%
!	AAGAGAATTAATTTCATGGA+TGG	+	tig0024656:35349-35368	Msa1418950:intron	25.0%
!!	ATTTTTACAGACTCAAATCA+AGG	+	tig0024656:35425-35444	Msa1418950:CDS	25.0%
!	ACAATAGGAGACATTATATA+TGG	+	tig0024656:35454-35473	Msa1418950:intron	25.0%
!	ATCAAAATTCACTTCTTCTA+GGG	+	tig0024656:34142-34161	Msa1418950:CDS	25.0%
!!	GAGAAATATAGTTAGAGTTT+TGG	-	tig0024656:34266-34285	None:intergenic	25.0%
!	TTATTTACTAGTACTTGATC+AGG	-	tig0024656:34357-34376	None:intergenic	25.0%
!!	TATATCCAATGATTTTTGCA+TGG	+	tig0024656:34389-34408	Msa1418950:CDS	25.0%
!	TTCCATTACAATCTCATTAA+GGG	-	tig0024656:34445-34464	None:intergenic	25.0%
!!!	GATCATATTTTGGAGAAAAA+TGG	+	tig0024656:34501-34520	Msa1418950:CDS	25.0%
!!	ATTTTGTTGCTAGTAAGATT+AGG	-	tig0024656:34707-34726	None:intergenic	25.0%
!	ATAAAATTGATCACCATATC+CGG	-	tig0024656:34775-34794	None:intergenic	25.0%
!!	CGTCGTTATTTCAATTATAT+AGG	+	tig0024656:34812-34831	Msa1418950:intron	25.0%
!	ACAGAAGAGATTAATAATAG+AGG	+	tig0024656:34903-34922	Msa1418950:CDS	25.0%
!	GTACAAGAGAATTAATTTCA+TGG	+	tig0024656:35345-35364	Msa1418950:intron	25.0%
!	AAGAGAATTAATTTCATGGA+TGG	+	tig0024656:35349-35368	Msa1418950:intron	25.0%
!!	ATTTTTACAGACTCAAATCA+AGG	+	tig0024656:35425-35444	Msa1418950:CDS	25.0%
!	ACAATAGGAGACATTATATA+TGG	+	tig0024656:35454-35473	Msa1418950:intron	25.0%
	GATCAAAATTCACTTCTTCT+AGG	+	tig0024656:34141-34160	Msa1418950:CDS	30.0%
	TCAAAATTCACTTCTTCTAG+GGG	+	tig0024656:34143-34162	Msa1418950:CDS	30.0%
!!	GAAAATGATGGATTGAACAA+TGG	+	tig0024656:34165-34184	Msa1418950:CDS	30.0%
	ATTACAATCTCATTAAGGGA+TGG	-	tig0024656:34441-34460	None:intergenic	30.0%
	ATCCCTTAATGAGATTGTAA+TGG	+	tig0024656:34440-34459	Msa1418950:CDS	30.0%
	CTTCCATTACAATCTCATTA+AGG	-	tig0024656:34446-34465	None:intergenic	30.0%
!	TGCAAGTGATGATCATATTT+TGG	+	tig0024656:34491-34510	Msa1418950:CDS	30.0%
	ATTTCAATTATATAGGGCCA+AGG	+	tig0024656:34819-34838	Msa1418950:intron	30.0%
	AATGCTTCTCAAGAAAATAG+TGG	+	tig0024656:34969-34988	Msa1418950:CDS	30.0%
	TTACAAAATCTTGTACCGAA+CGG	+	tig0024656:35229-35248	Msa1418950:CDS	30.0%
	AATATTACCTTTGTTCCGTT+CGG	-	tig0024656:35247-35266	None:intergenic	30.0%
!	TTTTCATGCGACAAATTCAT+TGG	+	tig0024656:35309-35328	Msa1418950:intron	30.0%
	TATAAGTACAATGCTTGAAG+AGG	+	tig0024656:35386-35405	Msa1418950:CDS	30.0%
	AAATCAAGGTAAAGCACAAT+AGG	+	tig0024656:35439-35458	Msa1418950:intron	30.0%
	GATCAAAATTCACTTCTTCT+AGG	+	tig0024656:34141-34160	Msa1418950:CDS	30.0%
	TCAAAATTCACTTCTTCTAG+GGG	+	tig0024656:34143-34162	Msa1418950:CDS	30.0%
!!	GAAAATGATGGATTGAACAA+TGG	+	tig0024656:34165-34184	Msa1418950:CDS	30.0%
	ATTACAATCTCATTAAGGGA+TGG	-	tig0024656:34441-34460	None:intergenic	30.0%
	ATCCCTTAATGAGATTGTAA+TGG	+	tig0024656:34440-34459	Msa1418950:CDS	30.0%
	CTTCCATTACAATCTCATTA+AGG	-	tig0024656:34446-34465	None:intergenic	30.0%
!	TGCAAGTGATGATCATATTT+TGG	+	tig0024656:34491-34510	Msa1418950:CDS	30.0%
	ATTTCAATTATATAGGGCCA+AGG	+	tig0024656:34819-34838	Msa1418950:intron	30.0%
	AATGCTTCTCAAGAAAATAG+TGG	+	tig0024656:34969-34988	Msa1418950:CDS	30.0%
	TTACAAAATCTTGTACCGAA+CGG	+	tig0024656:35229-35248	Msa1418950:CDS	30.0%
	AATATTACCTTTGTTCCGTT+CGG	-	tig0024656:35247-35266	None:intergenic	30.0%
!	TTTTCATGCGACAAATTCAT+TGG	+	tig0024656:35309-35328	Msa1418950:intron	30.0%
	TATAAGTACAATGCTTGAAG+AGG	+	tig0024656:35386-35405	Msa1418950:CDS	30.0%
	AAATCAAGGTAAAGCACAAT+AGG	+	tig0024656:35439-35458	Msa1418950:intron	30.0%
	AATTTCAGCAGTGCAAAATG+TGG	-	tig0024656:34199-34218	None:intergenic	35.0%
!	ACATTTTGCACTGCTGAAAT+TGG	+	tig0024656:34198-34217	Msa1418950:CDS	35.0%
	CTCATCCATGCAAAAATCAT+TGG	-	tig0024656:34397-34416	None:intergenic	35.0%
	GAAACTTGATGTGATAGAAG+TGG	+	tig0024656:34593-34612	Msa1418950:CDS	35.0%
!!!	GAAATGCGAGGTTTTTTCTT+CGG	-	tig0024656:34660-34679	None:intergenic	35.0%
!!!	CTTACATCTTTTGAAATGCG+AGG	-	tig0024656:34672-34691	None:intergenic	35.0%
	CTAAAAAGCGGAATTAGAGA+CGG	-	tig0024656:34741-34760	None:intergenic	35.0%
	GCATCTTCAACACTAAAAAG+CGG	-	tig0024656:34753-34772	None:intergenic	35.0%
!!	CTTTTTAGTGTTGAAGATGC+CGG	+	tig0024656:34753-34772	Msa1418950:intron	35.0%
!	TTGCAATTTTCATGCATCCT+TGG	-	tig0024656:34839-34858	None:intergenic	35.0%
	AAGGATGCATGAAAATTGCA+AGG	+	tig0024656:34838-34857	Msa1418950:CDS	35.0%
	GAAAGTTGCTAACAATGAAG+AGG	+	tig0024656:34875-34894	Msa1418950:CDS	35.0%
	GAACTACTCTCAACTCAAAT+GGG	+	tig0024656:34994-35013	Msa1418950:CDS	35.0%
	TACCCTTGCATATAGACTTT+GGG	-	tig0024656:35054-35073	None:intergenic	35.0%
	TTACCCTTGCATATAGACTT+TGG	-	tig0024656:35055-35074	None:intergenic	35.0%
	ATTTCATGGATGGTTTATGC+AGG	+	tig0024656:35359-35378	Msa1418950:intron	35.0%
!!	TTTTGAGCTCTGATGATATG+TGG	+	tig0024656:35579-35598	Msa1418950:CDS	35.0%
	TATGCACCACTTGCTTATAA+TGG	+	tig0024656:35605-35624	Msa1418950:CDS	35.0%
	TCAAGTCCATTATAAGCAAG+TGG	-	tig0024656:35614-35633	None:intergenic	35.0%
	AATTTCAGCAGTGCAAAATG+TGG	-	tig0024656:34199-34218	None:intergenic	35.0%
!	ACATTTTGCACTGCTGAAAT+TGG	+	tig0024656:34198-34217	Msa1418950:CDS	35.0%
	CTCATCCATGCAAAAATCAT+TGG	-	tig0024656:34397-34416	None:intergenic	35.0%
	GAAACTTGATGTGATAGAAG+TGG	+	tig0024656:34593-34612	Msa1418950:CDS	35.0%
!!!	GAAATGCGAGGTTTTTTCTT+CGG	-	tig0024656:34660-34679	None:intergenic	35.0%
!!!	CTTACATCTTTTGAAATGCG+AGG	-	tig0024656:34672-34691	None:intergenic	35.0%
	CTAAAAAGCGGAATTAGAGA+CGG	-	tig0024656:34741-34760	None:intergenic	35.0%
	GCATCTTCAACACTAAAAAG+CGG	-	tig0024656:34753-34772	None:intergenic	35.0%
!!	CTTTTTAGTGTTGAAGATGC+CGG	+	tig0024656:34753-34772	Msa1418950:intron	35.0%
!	TTGCAATTTTCATGCATCCT+TGG	-	tig0024656:34839-34858	None:intergenic	35.0%
	AAGGATGCATGAAAATTGCA+AGG	+	tig0024656:34838-34857	Msa1418950:CDS	35.0%
	GAAAGTTGCTAACAATGAAG+AGG	+	tig0024656:34875-34894	Msa1418950:CDS	35.0%
	GAACTACTCTCAACTCAAAT+GGG	+	tig0024656:34994-35013	Msa1418950:CDS	35.0%
	TACCCTTGCATATAGACTTT+GGG	-	tig0024656:35054-35073	None:intergenic	35.0%
	TTACCCTTGCATATAGACTT+TGG	-	tig0024656:35055-35074	None:intergenic	35.0%
	ATTTCATGGATGGTTTATGC+AGG	+	tig0024656:35359-35378	Msa1418950:intron	35.0%
!!	TTTTGAGCTCTGATGATATG+TGG	+	tig0024656:35579-35598	Msa1418950:CDS	35.0%
	TATGCACCACTTGCTTATAA+TGG	+	tig0024656:35605-35624	Msa1418950:CDS	35.0%
	TCAAGTCCATTATAAGCAAG+TGG	-	tig0024656:35614-35633	None:intergenic	35.0%
	TACTTTCCCTGAAGGAGAAT+GGG	+	tig0024656:34059-34078	Msa1418950:CDS	40.0%
	AGAAATCCCATTCTCCTTCA+GGG	-	tig0024656:34068-34087	None:intergenic	40.0%
	AAGAAATCCCATTCTCCTTC+AGG	-	tig0024656:34069-34088	None:intergenic	40.0%
!	CTTCTTCTAGGGGAAAATGA+TGG	+	tig0024656:34153-34172	Msa1418950:CDS	40.0%
	AGTTGCAAATGCAGCTCAAA+AGG	+	tig0024656:34571-34590	Msa1418950:CDS	40.0%
	ACTTGATGTGATAGAAGTGG+AGG	+	tig0024656:34596-34615	Msa1418950:CDS	40.0%
	CTCTAGTAGCAACATTTCTG+AGG	+	tig0024656:34941-34960	Msa1418950:CDS	40.0%
	GCTTCTCAAGAAAATAGTGG+AGG	+	tig0024656:34972-34991	Msa1418950:CDS	40.0%
	GGAACTACTCTCAACTCAAA+TGG	+	tig0024656:34993-35012	Msa1418950:CDS	40.0%
	ATCCCCAAAGTCTATATGCA+AGG	+	tig0024656:35048-35067	Msa1418950:CDS	40.0%
	TCCCCAAAGTCTATATGCAA+GGG	+	tig0024656:35049-35068	Msa1418950:CDS	40.0%
	ACCCTTGCATATAGACTTTG+GGG	-	tig0024656:35053-35072	None:intergenic	40.0%
!!	GCTTATAATGGACTTGACCT+TGG	+	tig0024656:35617-35636	Msa1418950:CDS	40.0%
	ATAGTGGTAGAGAACTGTTG+AGG	-	tig0024656:35655-35674	None:intergenic	40.0%
	TACTTTCCCTGAAGGAGAAT+GGG	+	tig0024656:34059-34078	Msa1418950:CDS	40.0%
	AGAAATCCCATTCTCCTTCA+GGG	-	tig0024656:34068-34087	None:intergenic	40.0%
	AAGAAATCCCATTCTCCTTC+AGG	-	tig0024656:34069-34088	None:intergenic	40.0%
!	CTTCTTCTAGGGGAAAATGA+TGG	+	tig0024656:34153-34172	Msa1418950:CDS	40.0%
	AGTTGCAAATGCAGCTCAAA+AGG	+	tig0024656:34571-34590	Msa1418950:CDS	40.0%
	ACTTGATGTGATAGAAGTGG+AGG	+	tig0024656:34596-34615	Msa1418950:CDS	40.0%
	CTCTAGTAGCAACATTTCTG+AGG	+	tig0024656:34941-34960	Msa1418950:CDS	40.0%
	GCTTCTCAAGAAAATAGTGG+AGG	+	tig0024656:34972-34991	Msa1418950:CDS	40.0%
	GGAACTACTCTCAACTCAAA+TGG	+	tig0024656:34993-35012	Msa1418950:CDS	40.0%
	ATCCCCAAAGTCTATATGCA+AGG	+	tig0024656:35048-35067	Msa1418950:CDS	40.0%
	TCCCCAAAGTCTATATGCAA+GGG	+	tig0024656:35049-35068	Msa1418950:CDS	40.0%
	ACCCTTGCATATAGACTTTG+GGG	-	tig0024656:35053-35072	None:intergenic	40.0%
!!	GCTTATAATGGACTTGACCT+TGG	+	tig0024656:35617-35636	Msa1418950:CDS	40.0%
	ATAGTGGTAGAGAACTGTTG+AGG	-	tig0024656:35655-35674	None:intergenic	40.0%
!!	CCTTCAGGGAAAGTACCTAT+AGG	-	tig0024656:34054-34073	None:intergenic	45.0%
	CCTATAGGTACTTTCCCTGA+AGG	+	tig0024656:34051-34070	Msa1418950:CDS	45.0%
	GTACTTTCCCTGAAGGAGAA+TGG	+	tig0024656:34058-34077	Msa1418950:CDS	45.0%
!!	TGCTTGGTGTGAAGATCAAC+AGG	-	tig0024656:34549-34568	None:intergenic	45.0%
	CTGCATTTGCAACTCATGCT+TGG	-	tig0024656:34565-34584	None:intergenic	45.0%
!	AGTGTTGAAGATGCCGGATA+TGG	+	tig0024656:34759-34778	Msa1418950:intron	45.0%
	TCTTGTACCGAACGGAACAA+AGG	+	tig0024656:35237-35256	Msa1418950:CDS	45.0%
	TGAGGTTGAGATTGAGTCCA+AGG	-	tig0024656:35637-35656	None:intergenic	45.0%
!!	CCTTCAGGGAAAGTACCTAT+AGG	-	tig0024656:34054-34073	None:intergenic	45.0%
	CCTATAGGTACTTTCCCTGA+AGG	+	tig0024656:34051-34070	Msa1418950:CDS	45.0%
	GTACTTTCCCTGAAGGAGAA+TGG	+	tig0024656:34058-34077	Msa1418950:CDS	45.0%
!!	TGCTTGGTGTGAAGATCAAC+AGG	-	tig0024656:34549-34568	None:intergenic	45.0%
	CTGCATTTGCAACTCATGCT+TGG	-	tig0024656:34565-34584	None:intergenic	45.0%
!	AGTGTTGAAGATGCCGGATA+TGG	+	tig0024656:34759-34778	Msa1418950:intron	45.0%
	TCTTGTACCGAACGGAACAA+AGG	+	tig0024656:35237-35256	Msa1418950:CDS	45.0%
	TGAGGTTGAGATTGAGTCCA+AGG	-	tig0024656:35637-35656	None:intergenic	45.0%
!!	ATCTTATATTAAAAAAAAAA+AGG	-	tig0024656:35497-35516	None:intergenic	5.0%
!!	ATCTTATATTAAAAAAAAAA+AGG	-	tig0024656:35497-35516	None:intergenic	5.0%
	GGGAAGACAAGAGCTAGTAG+AGG	+	tig0024656:35014-35033	Msa1418950:CDS	50.0%
	GGGAAGACAAGAGCTAGTAG+AGG	+	tig0024656:35014-35033	Msa1418950:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
tig0024656	gene	34045	35676	34045	ID=Msa1418950;Name=Msa1418950
tig0024656	mRNA	34045	35676	34045	ID=Msa1418950-mRNA-1;Parent=Msa1418950;Name=Msa1418950-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|5\|0\|369
tig0024656	exon	34045	34686	34045	ID=Msa1418950-mRNA-1:exon:650;Parent=Msa1418950-mRNA-1
tig0024656	exon	34834	35070	34834	ID=Msa1418950-mRNA-1:exon:651;Parent=Msa1418950-mRNA-1
tig0024656	exon	35193	35258	35193	ID=Msa1418950-mRNA-1:exon:652;Parent=Msa1418950-mRNA-1
tig0024656	exon	35381	35446	35381	ID=Msa1418950-mRNA-1:exon:653;Parent=Msa1418950-mRNA-1
tig0024656	exon	35578	35676	35578	ID=Msa1418950-mRNA-1:exon:654;Parent=Msa1418950-mRNA-1
tig0024656	CDS	34045	34686	34045	ID=Msa1418950-mRNA-1:cds;Parent=Msa1418950-mRNA-1
tig0024656	CDS	34834	35070	34834	ID=Msa1418950-mRNA-1:cds;Parent=Msa1418950-mRNA-1
tig0024656	CDS	35193	35258	35193	ID=Msa1418950-mRNA-1:cds;Parent=Msa1418950-mRNA-1
tig0024656	CDS	35381	35446	35381	ID=Msa1418950-mRNA-1:cds;Parent=Msa1418950-mRNA-1
tig0024656	CDS	35578	35676	35578	ID=Msa1418950-mRNA-1:cds;Parent=Msa1418950-mRNA-1

Gene Sequence

>Msa1418950

ATGGAACCTATAGGTACTTTCCCTGAAGGAGAATGGGATTTCTTTCGCAAAATGTTTGCTAGTGAAGATCATGAATATTACTCACAACAATTTCTTGATCAAAATTCACTTCTTCTAGGGGAAAATGATGGATTGAACAATGGAACACAGTCCACATTTTGCACTGCTGAAATTGGTGAAAATGAGCGTATGTTTTATTCTTTTGATCATGCTCATATCCAAAACTCTAACTATATTTCTCAATCTCAAGAGAATAGTTACAATAGCAATTCTAGTGCTAGTGATGATACAAATTACTATTTTAGTTATCCTGATCAAGTACTAGTAAATAATATTAATAATTGTATATCCAATGATTTTTGCATGGATGAGAATTTGTTTGCTTCTTCTGTTCCATCCCTTAATGAGATTGTAATGGAAGAGAATGTGAGAATGAATGAAGATTCTGCAAGTGATGATCATATTTTGGAGAAAAATGGTTATAATACTCAAATAATGGAACCTGTTGATCTTCACACCAAGCATGAGTTGCAAATGCAGCTCAAAAGGAAACTTGATGTGATAGAAGTGGAGGTTCCTGTTGAAGAAAAAATTAACAACAAATCAGAGAATCCGAAGAAAAAACCTCGCATTTCAAAAGATGGCCAAGGATGCATGAAAATTGCAAGGTCAAAGAAGAATAAGAAAGTTGCTAACAATGAAGAGGAGATTACAGAAGAGATTAATAATAGAGGATCAAATGGAAATAGCTCTAGTAGCAACATTTCTGAGGATGATAATGCTTCTCAAGAAAATAGTGGAGGAACTACTCTCAACTCAAATGGGAAGACAAGAGCTAGTAGAGGATCAGCAACAGATCCCCAAAGTCTATATGCAAGGAAAAGAAGAGAGAGAATAAATGAGCGACTAAGAGTCTTACAAAATCTTGTACCGAACGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTCAATTATGTGAAATTTTTACAGACTCAAATCAAGCTTTTGAGCTCTGATGATATGTGGATGTATGCACCACTTGCTTATAATGGACTTGACCTTGGACTCAATCTCAACCTCAACAGTTCTCTACCACTATGA

Protein sequence

>Msa1418950

MEPIGTFPEGEWDFFRKMFASEDHEYYSQQFLDQNSLLLGENDGLNNGTQSTFCTAEIGENERMFYSFDHAHIQNSNYISQSQENSYNSNSSASDDTNYYFSYPDQVLVNNINNCISNDFCMDENLFASSVPSLNEIVMEENVRMNEDSASDDHILEKNGYNTQIMEPVDLHTKHELQMQLKRKLDVIEVEVPVEEKINNKSENPKKKPRISKDGQGCMKIARSKKNKKVANNEEEITEEINNRGSNGNSSSSNISEDDNASQENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRVLQNLVPNGTKVDISTMLEEAVNYVKFLQTQIKLLSSDDMWMYAPLAYNGLDLGLNLNLNSSLPL*