AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1419270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1419270 MtrunA17_Chr4g0012791 96.289 485 17 1 1 484 1 485 0.0 971
Msa1419270 MtrunA17_Chr4g0061301 39.130 161 78 4 224 381 345 488 6.05e-25 107
Msa1419270 MtrunA17_Chr4g0061301 25.193 389 209 13 6 334 4 370 2.93e-16 81.3
Msa1419270 MtrunA17_Chr1g0197281 37.021 235 105 11 158 380 98 301 1.93e-23 101
Msa1419270 MtrunA17_Chr5g0425411 40.940 149 67 2 227 375 119 246 3.92e-21 92.4
Msa1419270 MtrunA17_Chr7g0231181 36.905 168 48 5 215 382 231 340 3.30e-20 92.0
Msa1419270 MtrunA17_Chr5g0448611 43.860 114 50 3 227 335 130 234 5.58e-20 90.1
Msa1419270 MtrunA17_Chr1g0207451 32.000 200 52 6 136 335 39 154 1.76e-18 85.1
Msa1419270 MtrunA17_Chr2g0320311 30.894 246 109 9 158 380 71 278 2.95e-16 79.3
Msa1419270 MtrunA17_Chr1g0180311 34.978 223 106 10 161 380 80 266 4.98e-16 78.6
Msa1419270 MtrunA17_Chr4g0027991 37.209 172 70 7 226 380 112 262 1.17e-15 77.4
Msa1419270 MtrunA17_Chr3g0134711 33.333 144 59 3 200 335 51 165 6.89e-14 71.2
Msa1419270 MtrunA17_Chr1g0188911 29.767 215 117 8 177 379 1 193 2.59e-13 68.6
Msa1419270 MtrunA17_Chr1g0188901 34.416 154 74 4 226 379 59 185 9.94e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1419270 AT1G02040.1 36.032 247 100 8 136 377 89 282 7.77e-30 119
Msa1419270 AT4G35280.1 29.355 310 130 9 66 375 64 284 3.33e-26 108
Msa1419270 AT2G17180.1 30.566 265 97 8 71 335 57 234 1.11e-24 103
Msa1419270 AT5G03510.1 32.000 275 145 10 132 403 43 278 9.39e-23 98.6
Msa1419270 AT2G28200.1 31.967 244 115 9 148 380 58 261 2.89e-19 88.6
Msa1419270 AT3G10470.1 34.091 176 88 3 226 380 181 349 4.02e-19 89.7
Msa1419270 AT3G60580.1 30.088 226 90 6 156 381 121 278 9.95e-19 87.0
Msa1419270 AT5G04390.1 30.556 252 116 11 158 380 96 317 1.76e-18 87.4
Msa1419270 AT5G56200.1 35.172 145 67 2 229 362 344 472 3.09e-18 87.8
Msa1419270 AT1G02030.1 28.972 321 147 9 78 384 7 260 2.44e-17 82.4
Msa1419270 AT5G67450.1 29.902 204 90 6 135 335 34 187 7.35e-14 71.6
Msa1419270 AT1G49900.1 36.364 110 37 3 226 335 192 268 3.57e-12 69.3

Find 94 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAATAACCCTACATTAA+TGG 0.180867 tig0024694:-26865 Msa1419270:CDS
ATTTAGGTATTTGTTCTATT+TGG 0.213723 tig0024694:+26685 None:intergenic
AGCCATTAATGTAGGGTTAT+TGG 0.241430 tig0024694:+26863 None:intergenic
TCAGAAGAGTTATCAAATTT+AGG 0.259764 tig0024694:+26669 None:intergenic
TCTGCCATGGCGTCAGATTC+TGG 0.261055 tig0024694:+27407 None:intergenic
GGCAAAATTAAGTGAGTTAA+AGG 0.281586 tig0024694:-26397 Msa1419270:CDS
AATGGTGCAATGAAATTCAT+AGG 0.324641 tig0024694:+27158 None:intergenic
GAATACATACGTTTGTTACT+TGG 0.350695 tig0024694:+27569 None:intergenic
TTTGGATGTGGAAGAGCATT+AGG 0.359877 tig0024694:-27683 Msa1419270:CDS
TGTCACAGGAGTTTCTCTTC+TGG 0.360154 tig0024694:-26798 Msa1419270:CDS
CCATGGTTGCAAGTTGGAAT+TGG 0.363083 tig0024694:-26345 Msa1419270:CDS
TTCTCTTCTGGACAAGCATT+AGG 0.372217 tig0024694:-26786 Msa1419270:CDS
TTCAACTCACATCAAGCATT+AGG 0.388139 tig0024694:-27041 Msa1419270:CDS
TCAAATTGTAGAGATGAGTT+TGG 0.389591 tig0024694:+26897 None:intergenic
TCGTCGGAGCTGGAAGATTA+AGG 0.396549 tig0024694:+26625 None:intergenic
AAACAACAATAACAACAATA+AGG 0.396628 tig0024694:-27114 Msa1419270:CDS
GCCGAGGCACATGATTCTTC+CGG 0.408850 tig0024694:+27206 None:intergenic
AGGTCAAGTTTGAGATCAAT+TGG 0.419542 tig0024694:+26645 None:intergenic
ACGATGATCCAGCGAGCGAC+TGG 0.423324 tig0024694:-27610 Msa1419270:CDS
CCACCTTCCCAGTCGCTCGC+TGG 0.430046 tig0024694:+27602 None:intergenic
CCATAGAGCAAGTCACAAAA+AGG 0.435253 tig0024694:-27015 Msa1419270:CDS
AATTGAGCATTCATGCACTT+TGG 0.442891 tig0024694:+26821 None:intergenic
AAGGCCAAAGGTGTTGCAAA+AGG 0.447556 tig0024694:-27095 Msa1419270:CDS
GATGAAGAAGCCATTAATGT+AGG 0.452698 tig0024694:+26855 None:intergenic
ATTTGTGTATTCGTCGGAGC+TGG 0.459766 tig0024694:+26615 None:intergenic
AAGGATGTAATTAACATTGG+TGG 0.466872 tig0024694:-26378 Msa1419270:CDS
TGATCCTCTTGAGGTTGAAC+CGG 0.478585 tig0024694:-27225 Msa1419270:CDS
AGGCGATGAAACAAGTCAAA+TGG 0.487942 tig0024694:-27636 Msa1419270:CDS
TCCTCAACAATACTATCCTC+AGG 0.492270 tig0024694:+26957 None:intergenic
AAATTTACTTGCAACCAACA+TGG 0.497835 tig0024694:-26596 Msa1419270:CDS
GAGGATGTGGCGGGTCGAAA+AGG 0.501995 tig0024694:-27358 Msa1419270:CDS
GTCAATGGCAGGAGAGGATG+TGG 0.504371 tig0024694:-27371 Msa1419270:CDS
TGCTATTGTTGATCCTCTTG+AGG 0.509095 tig0024694:-27234 Msa1419270:CDS
AATTTACTTGCAACCAACAT+GGG 0.509114 tig0024694:-26595 Msa1419270:CDS
ATGTTGATAACGAAGATGAT+AGG 0.509440 tig0024694:-26431 Msa1419270:CDS
ACATACGTTTGTTACTTGGT+GGG 0.515314 tig0024694:+27573 None:intergenic
TACATACGTTTGTTACTTGG+TGG 0.516103 tig0024694:+27572 None:intergenic
TTAAAGGATGTAATTAACAT+TGG 0.518467 tig0024694:-26381 Msa1419270:CDS
AAATAACAACCTTAATGCAT+TGG 0.519304 tig0024694:-26460 Msa1419270:CDS
AAATTGTATGGCTTTGATTG+TGG 0.523384 tig0024694:-27753 None:intergenic
TTCTTCATCTTTGCTAGCCG+AGG 0.524004 tig0024694:+27190 None:intergenic
TGCAAATTCAAGTGCAACAA+AGG 0.526395 tig0024694:-26571 Msa1419270:CDS
GATGATGGTGATGGCGTCAA+TGG 0.526855 tig0024694:-27386 Msa1419270:CDS
ATGGTGATGGCGTCAATGGC+AGG 0.531985 tig0024694:-27382 Msa1419270:CDS
AGGTCGATGCGAACTAAAGT+AGG 0.532729 tig0024694:-27332 Msa1419270:CDS
GTGGTCACAAGAGATGTCAT+TGG 0.533236 tig0024694:-26764 Msa1419270:CDS
TCTTCACCATGGTTGCAAGT+TGG 0.534611 tig0024694:-26351 Msa1419270:CDS
AGGCCAAAGGTGTTGCAAAA+GGG 0.542189 tig0024694:-27094 Msa1419270:CDS
CTTGAATTTGCACCCCATGT+TGG 0.546976 tig0024694:+26582 None:intergenic
CCAATTCCAACTTGCAACCA+TGG 0.547493 tig0024694:+26345 None:intergenic
CCAGCGAGCGACTGGGAAGG+TGG 0.547829 tig0024694:-27602 Msa1419270:CDS
TCATCTCTACAATTTGATCA+TGG 0.547992 tig0024694:-26891 Msa1419270:CDS
AGATGATAGGAAGGTCAAGC+TGG 0.549130 tig0024694:-26418 Msa1419270:CDS
ATGAAGAAGCCATTAATGTA+GGG 0.551910 tig0024694:+26856 None:intergenic
CTAGCCAATGTTGATGTGTC+GGG 0.553643 tig0024694:+26726 None:intergenic
GGAGGACATATGAGAGCTCA+TGG 0.556898 tig0024694:-27662 Msa1419270:CDS
GTGGCGGGTCGAAAAGGAAA+AGG 0.563893 tig0024694:-27352 Msa1419270:CDS
CTCTCCAGAATCTGACGCCA+TGG 0.566126 tig0024694:-27411 Msa1419270:CDS
CCCTGAGGATAGTATTGTTG+AGG 0.568665 tig0024694:-26958 Msa1419270:CDS
CATATGAGAGCTCATGGCAT+AGG 0.569691 tig0024694:-27656 Msa1419270:CDS
ATGGTGCAATGAAATTCATA+GGG 0.570005 tig0024694:+27159 None:intergenic
AAGTAAATTTGTGTATTCGT+CGG 0.570443 tig0024694:+26609 None:intergenic
TGGAAATCATTCCTCGAACA+CGG 0.572286 tig0024694:-27476 Msa1419270:CDS
ACCGGAAGAATCATGTGCCT+CGG 0.573674 tig0024694:-27207 Msa1419270:CDS
ATGGCAGGAGAGGATGTGGC+GGG 0.574263 tig0024694:-27367 Msa1419270:CDS
CCTAGCCAATGTTGATGTGT+CGG 0.581613 tig0024694:+26725 None:intergenic
CAAGAGGATCAACAATAGCA+TGG 0.581888 tig0024694:+27237 None:intergenic
GCCATCACCATCATCTGCCA+TGG 0.587259 tig0024694:+27394 None:intergenic
ATGAATGCTCAATTTGTCAC+AGG 0.591805 tig0024694:-26812 Msa1419270:CDS
TCTTCTGGACAAGCATTAGG+TGG 0.597423 tig0024694:-26783 Msa1419270:CDS
TGCACCCGACACATCAACAT+TGG 0.597550 tig0024694:-26730 Msa1419270:CDS
CGATGATCCAGCGAGCGACT+GGG 0.598139 tig0024694:-27609 Msa1419270:CDS
CCGACACATCAACATTGGCT+AGG 0.600465 tig0024694:-26725 Msa1419270:CDS
TCTTCCGGTTCAACCTCAAG+AGG 0.608243 tig0024694:+27221 None:intergenic
AAGAGGATCAACAATAGCAT+GGG 0.608769 tig0024694:+27238 None:intergenic
TCTGACGCCATGGCAGATGA+TGG 0.610241 tig0024694:-27401 Msa1419270:CDS
CCTCAACAATACTATCCTCA+GGG 0.615712 tig0024694:+26958 None:intergenic
AACTCACATCAAGCATTAGG+TGG 0.619782 tig0024694:-27038 Msa1419270:CDS
AATAACAACAATAAGGCCAA+AGG 0.626216 tig0024694:-27107 Msa1419270:CDS
GATCCAGCGAGCGACTGGGA+AGG 0.629491 tig0024694:-27605 Msa1419270:CDS
AATGGCAGGAGAGGATGTGG+CGG 0.638443 tig0024694:-27368 Msa1419270:CDS
AAAGGACAACATCATCAAAG+AGG 0.638690 tig0024694:-26553 Msa1419270:CDS
GGATGTGGAAGAGCATTAGG+AGG 0.639239 tig0024694:-27680 Msa1419270:CDS
ATTTACTTGCAACCAACATG+GGG 0.643546 tig0024694:-26594 Msa1419270:CDS
TGATAACGAAGATGATAGGA+AGG 0.644383 tig0024694:-26427 Msa1419270:CDS
TAGGGAATTCTATAAGACAA+TGG 0.648546 tig0024694:+27140 None:intergenic
GATGGCGTCAATGGCAGGAG+AGG 0.658068 tig0024694:-27377 Msa1419270:CDS
TTGGTGGAAGTTCTTCACCA+TGG 0.661371 tig0024694:-26362 Msa1419270:CDS
TTGGTACAACAACTGATGTG+AGG 0.681780 tig0024694:-26326 Msa1419270:CDS
GCCATGGCAGATGATGGTGA+TGG 0.691704 tig0024694:-27395 Msa1419270:CDS
TGTAGGGTGTGTGAGCATTG+TGG 0.711110 tig0024694:-27515 Msa1419270:CDS
CATGGCGTCAGATTCTGGAG+AGG 0.713259 tig0024694:+27412 None:intergenic
AAAATGCAACTCAGATGACG+CGG 0.742662 tig0024694:-27453 Msa1419270:CDS
AAGGCTTGATCAAAACCCTG+AGG 0.762726 tig0024694:-26973 Msa1419270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTAAAATTTGCAAAAA+AGG - tig0024694:26353-26372 Msa1419270:CDS 15.0%
!!! TTTTGTAAAATTTGCAAAAA+AGG - tig0024694:26353-26372 Msa1419270:CDS 15.0%
!! TAATAAGCTAAAAAGTTGTA+GGG - tig0024694:26529-26548 Msa1419270:CDS 20.0%
!!! TTGTTATTGTTGTTTTCATA+GGG + tig0024694:26941-26960 None:intergenic 20.0%
!! AAACAACAATAACAACAATA+AGG - tig0024694:26946-26965 Msa1419270:CDS 20.0%
!! ATTTAGGTATTTGTTCTATT+TGG + tig0024694:27378-27397 None:intergenic 20.0%
!!! TTTCATTATTTTGATCAACT+AGG + tig0024694:27564-27583 None:intergenic 20.0%
!! TTAAAGGATGTAATTAACAT+TGG - tig0024694:27679-27698 Msa1419270:CDS 20.0%
!! TAATAAGCTAAAAAGTTGTA+GGG - tig0024694:26529-26548 Msa1419270:CDS 20.0%
!!! TTGTTATTGTTGTTTTCATA+GGG + tig0024694:26941-26960 None:intergenic 20.0%
!! AAACAACAATAACAACAATA+AGG - tig0024694:26946-26965 Msa1419270:CDS 20.0%
!! ATTTAGGTATTTGTTCTATT+TGG + tig0024694:27378-27397 None:intergenic 20.0%
!!! TTTCATTATTTTGATCAACT+AGG + tig0024694:27564-27583 None:intergenic 20.0%
!! TTAAAGGATGTAATTAACAT+TGG - tig0024694:27679-27698 Msa1419270:CDS 20.0%
! AAAATTTGCAAAAAAGGCTT+TGG - tig0024694:26359-26378 Msa1419270:CDS 25.0%
!!! CTACAACTTTTTAGCTTATT+AGG + tig0024694:26530-26549 None:intergenic 25.0%
! CTAATAAGCTAAAAAGTTGT+AGG - tig0024694:26528-26547 Msa1419270:CDS 25.0%
!!! GTTGTTATTGTTGTTTTCAT+AGG + tig0024694:26942-26961 None:intergenic 25.0%
! TCAGAAGAGTTATCAAATTT+AGG + tig0024694:27394-27413 None:intergenic 25.0%
! AAGTAAATTTGTGTATTCGT+CGG + tig0024694:27454-27473 None:intergenic 25.0%
! AAATAACAACCTTAATGCAT+TGG - tig0024694:27600-27619 Msa1419270:CDS 25.0%
! AAAATTTGCAAAAAAGGCTT+TGG - tig0024694:26359-26378 Msa1419270:CDS 25.0%
!!! CTACAACTTTTTAGCTTATT+AGG + tig0024694:26530-26549 None:intergenic 25.0%
! CTAATAAGCTAAAAAGTTGT+AGG - tig0024694:26528-26547 Msa1419270:CDS 25.0%
!!! GTTGTTATTGTTGTTTTCAT+AGG + tig0024694:26942-26961 None:intergenic 25.0%
! TCAGAAGAGTTATCAAATTT+AGG + tig0024694:27394-27413 None:intergenic 25.0%
! AAGTAAATTTGTGTATTCGT+CGG + tig0024694:27454-27473 None:intergenic 25.0%
! AAATAACAACCTTAATGCAT+TGG - tig0024694:27600-27619 Msa1419270:CDS 25.0%
! GAATACATACGTTTGTTACT+TGG + tig0024694:26494-26513 None:intergenic 30.0%
!!! GTGGCAAAGAATTTTTTTCT+TGG - tig0024694:26564-26583 Msa1419270:CDS 30.0%
! AGATCTTTTTCTTCACTTGA+AGG + tig0024694:26779-26798 None:intergenic 30.0%
ATGGTGCAATGAAATTCATA+GGG + tig0024694:26904-26923 None:intergenic 30.0%
AATGGTGCAATGAAATTCAT+AGG + tig0024694:26905-26924 None:intergenic 30.0%
TAGGGAATTCTATAAGACAA+TGG + tig0024694:26923-26942 None:intergenic 30.0%
AATAACAACAATAAGGCCAA+AGG - tig0024694:26953-26972 Msa1419270:CDS 30.0%
TCAAATTGTAGAGATGAGTT+TGG + tig0024694:27166-27185 None:intergenic 30.0%
TCATCTCTACAATTTGATCA+TGG - tig0024694:27169-27188 Msa1419270:CDS 30.0%
TTCCAATAACCCTACATTAA+TGG - tig0024694:27195-27214 Msa1419270:CDS 30.0%
ATGAAGAAGCCATTAATGTA+GGG + tig0024694:27207-27226 None:intergenic 30.0%
AAATTTACTTGCAACCAACA+TGG - tig0024694:27464-27483 Msa1419270:CDS 30.0%
AATTTACTTGCAACCAACAT+GGG - tig0024694:27465-27484 Msa1419270:CDS 30.0%
! CATTTTGTACCAATGCATTA+AGG + tig0024694:27612-27631 None:intergenic 30.0%
!! ATGTTGATAACGAAGATGAT+AGG - tig0024694:27629-27648 Msa1419270:CDS 30.0%
GGCAAAATTAAGTGAGTTAA+AGG - tig0024694:27663-27682 Msa1419270:CDS 30.0%
AAGGATGTAATTAACATTGG+TGG - tig0024694:27682-27701 Msa1419270:CDS 30.0%
! GAATACATACGTTTGTTACT+TGG + tig0024694:26494-26513 None:intergenic 30.0%
!!! GTGGCAAAGAATTTTTTTCT+TGG - tig0024694:26564-26583 Msa1419270:CDS 30.0%
! AGATCTTTTTCTTCACTTGA+AGG + tig0024694:26779-26798 None:intergenic 30.0%
ATGGTGCAATGAAATTCATA+GGG + tig0024694:26904-26923 None:intergenic 30.0%
AATGGTGCAATGAAATTCAT+AGG + tig0024694:26905-26924 None:intergenic 30.0%
TAGGGAATTCTATAAGACAA+TGG + tig0024694:26923-26942 None:intergenic 30.0%
AATAACAACAATAAGGCCAA+AGG - tig0024694:26953-26972 Msa1419270:CDS 30.0%
TCAAATTGTAGAGATGAGTT+TGG + tig0024694:27166-27185 None:intergenic 30.0%
TCATCTCTACAATTTGATCA+TGG - tig0024694:27169-27188 Msa1419270:CDS 30.0%
TTCCAATAACCCTACATTAA+TGG - tig0024694:27195-27214 Msa1419270:CDS 30.0%
ATGAAGAAGCCATTAATGTA+GGG + tig0024694:27207-27226 None:intergenic 30.0%
AAATTTACTTGCAACCAACA+TGG - tig0024694:27464-27483 Msa1419270:CDS 30.0%
AATTTACTTGCAACCAACAT+GGG - tig0024694:27465-27484 Msa1419270:CDS 30.0%
! CATTTTGTACCAATGCATTA+AGG + tig0024694:27612-27631 None:intergenic 30.0%
!! ATGTTGATAACGAAGATGAT+AGG - tig0024694:27629-27648 Msa1419270:CDS 30.0%
GGCAAAATTAAGTGAGTTAA+AGG - tig0024694:27663-27682 Msa1419270:CDS 30.0%
AAGGATGTAATTAACATTGG+TGG - tig0024694:27682-27701 Msa1419270:CDS 30.0%
! ACATACGTTTGTTACTTGGT+GGG + tig0024694:26490-26509 None:intergenic 35.0%
! TACATACGTTTGTTACTTGG+TGG + tig0024694:26491-26510 None:intergenic 35.0%
AAGAGGATCAACAATAGCAT+GGG + tig0024694:26825-26844 None:intergenic 35.0%
TTCAACTCACATCAAGCATT+AGG - tig0024694:27019-27038 Msa1419270:CDS 35.0%
AGCAAGTCACAAAAAGGTTA+AGG - tig0024694:27051-27070 Msa1419270:CDS 35.0%
GCAAGTCACAAAAAGGTTAA+GGG - tig0024694:27052-27071 Msa1419270:CDS 35.0%
!!! AGAGATGAGTTTGGTTTTGA+AGG + tig0024694:27157-27176 None:intergenic 35.0%
AGCCATTAATGTAGGGTTAT+TGG + tig0024694:27200-27219 None:intergenic 35.0%
GATGAAGAAGCCATTAATGT+AGG + tig0024694:27208-27227 None:intergenic 35.0%
! ATGCACTTTGGATTTTCTCT+TGG + tig0024694:27230-27249 None:intergenic 35.0%
AATTGAGCATTCATGCACTT+TGG + tig0024694:27242-27261 None:intergenic 35.0%
ATGAATGCTCAATTTGTCAC+AGG - tig0024694:27248-27267 Msa1419270:CDS 35.0%
! AGGTCAAGTTTGAGATCAAT+TGG + tig0024694:27418-27437 None:intergenic 35.0%
ATTTACTTGCAACCAACATG+GGG - tig0024694:27466-27485 Msa1419270:CDS 35.0%
TGCAAATTCAAGTGCAACAA+AGG - tig0024694:27489-27508 Msa1419270:CDS 35.0%
AAAGGACAACATCATCAAAG+AGG - tig0024694:27507-27526 Msa1419270:CDS 35.0%
! TGATAACGAAGATGATAGGA+AGG - tig0024694:27633-27652 Msa1419270:CDS 35.0%
! ACATACGTTTGTTACTTGGT+GGG + tig0024694:26490-26509 None:intergenic 35.0%
! TACATACGTTTGTTACTTGG+TGG + tig0024694:26491-26510 None:intergenic 35.0%
AAGAGGATCAACAATAGCAT+GGG + tig0024694:26825-26844 None:intergenic 35.0%
TTCAACTCACATCAAGCATT+AGG - tig0024694:27019-27038 Msa1419270:CDS 35.0%
AGCAAGTCACAAAAAGGTTA+AGG - tig0024694:27051-27070 Msa1419270:CDS 35.0%
GCAAGTCACAAAAAGGTTAA+GGG - tig0024694:27052-27071 Msa1419270:CDS 35.0%
!!! AGAGATGAGTTTGGTTTTGA+AGG + tig0024694:27157-27176 None:intergenic 35.0%
AGCCATTAATGTAGGGTTAT+TGG + tig0024694:27200-27219 None:intergenic 35.0%
GATGAAGAAGCCATTAATGT+AGG + tig0024694:27208-27227 None:intergenic 35.0%
! ATGCACTTTGGATTTTCTCT+TGG + tig0024694:27230-27249 None:intergenic 35.0%
AATTGAGCATTCATGCACTT+TGG + tig0024694:27242-27261 None:intergenic 35.0%
ATGAATGCTCAATTTGTCAC+AGG - tig0024694:27248-27267 Msa1419270:CDS 35.0%
! AGGTCAAGTTTGAGATCAAT+TGG + tig0024694:27418-27437 None:intergenic 35.0%
ATTTACTTGCAACCAACATG+GGG - tig0024694:27466-27485 Msa1419270:CDS 35.0%
TGCAAATTCAAGTGCAACAA+AGG - tig0024694:27489-27508 Msa1419270:CDS 35.0%
AAAGGACAACATCATCAAAG+AGG - tig0024694:27507-27526 Msa1419270:CDS 35.0%
! TGATAACGAAGATGATAGGA+AGG - tig0024694:27633-27652 Msa1419270:CDS 35.0%
!! TGCAAAAAAGGCTTTGGATG+TGG - tig0024694:26365-26384 Msa1419270:CDS 40.0%
!! TTTGGATGTGGAAGAGCATT+AGG - tig0024694:26377-26396 Msa1419270:CDS 40.0%
AGGCGATGAAACAAGTCAAA+TGG - tig0024694:26424-26443 Msa1419270:CDS 40.0%
TGGAAATCATTCCTCGAACA+CGG - tig0024694:26584-26603 Msa1419270:CDS 40.0%
AAAATGCAACTCAGATGACG+CGG - tig0024694:26607-26626 Msa1419270:CDS 40.0%
CAAGAGGATCAACAATAGCA+TGG + tig0024694:26826-26845 None:intergenic 40.0%
TGCTATTGTTGATCCTCTTG+AGG - tig0024694:26826-26845 Msa1419270:CDS 40.0%
! TAACCCTTTTGCAACACCTT+TGG + tig0024694:26972-26991 None:intergenic 40.0%
AACTCACATCAAGCATTAGG+TGG - tig0024694:27022-27041 Msa1419270:CDS 40.0%
!!! CCTTTTTGTGACTTGCTCTA+TGG + tig0024694:27048-27067 None:intergenic 40.0%
CCATAGAGCAAGTCACAAAA+AGG - tig0024694:27045-27064 Msa1419270:CDS 40.0%
! TTAAGGGATGTTTTGCTGCA+AGG - tig0024694:27068-27087 Msa1419270:CDS 40.0%
CCTCAACAATACTATCCTCA+GGG + tig0024694:27105-27124 None:intergenic 40.0%
TCCTCAACAATACTATCCTC+AGG + tig0024694:27106-27125 None:intergenic 40.0%
TTCTCTTCTGGACAAGCATT+AGG - tig0024694:27274-27293 Msa1419270:CDS 40.0%
TTGGTACAACAACTGATGTG+AGG - tig0024694:27734-27753 Msa1419270:CDS 40.0%
!! TGCAAAAAAGGCTTTGGATG+TGG - tig0024694:26365-26384 Msa1419270:CDS 40.0%
!! TTTGGATGTGGAAGAGCATT+AGG - tig0024694:26377-26396 Msa1419270:CDS 40.0%
AGGCGATGAAACAAGTCAAA+TGG - tig0024694:26424-26443 Msa1419270:CDS 40.0%
TGGAAATCATTCCTCGAACA+CGG - tig0024694:26584-26603 Msa1419270:CDS 40.0%
AAAATGCAACTCAGATGACG+CGG - tig0024694:26607-26626 Msa1419270:CDS 40.0%
CAAGAGGATCAACAATAGCA+TGG + tig0024694:26826-26845 None:intergenic 40.0%
TGCTATTGTTGATCCTCTTG+AGG - tig0024694:26826-26845 Msa1419270:CDS 40.0%
! TAACCCTTTTGCAACACCTT+TGG + tig0024694:26972-26991 None:intergenic 40.0%
AACTCACATCAAGCATTAGG+TGG - tig0024694:27022-27041 Msa1419270:CDS 40.0%
!!! CCTTTTTGTGACTTGCTCTA+TGG + tig0024694:27048-27067 None:intergenic 40.0%
CCATAGAGCAAGTCACAAAA+AGG - tig0024694:27045-27064 Msa1419270:CDS 40.0%
! TTAAGGGATGTTTTGCTGCA+AGG - tig0024694:27068-27087 Msa1419270:CDS 40.0%
CCTCAACAATACTATCCTCA+GGG + tig0024694:27105-27124 None:intergenic 40.0%
TCCTCAACAATACTATCCTC+AGG + tig0024694:27106-27125 None:intergenic 40.0%
TTCTCTTCTGGACAAGCATT+AGG - tig0024694:27274-27293 Msa1419270:CDS 40.0%
TTGGTACAACAACTGATGTG+AGG - tig0024694:27734-27753 Msa1419270:CDS 40.0%
CATATGAGAGCTCATGGCAT+AGG - tig0024694:26404-26423 Msa1419270:CDS 45.0%
! AGTTGCATTTTCCGTGTTCG+AGG + tig0024694:26598-26617 None:intergenic 45.0%
AGGTCGATGCGAACTAAAGT+AGG - tig0024694:26728-26747 Msa1419270:CDS 45.0%
TGATCCTCTTGAGGTTGAAC+CGG - tig0024694:26835-26854 Msa1419270:CDS 45.0%
TTCTTCATCTTTGCTAGCCG+AGG + tig0024694:26873-26892 None:intergenic 45.0%
!! AAGGCCAAAGGTGTTGCAAA+AGG - tig0024694:26965-26984 Msa1419270:CDS 45.0%
!! AGGCCAAAGGTGTTGCAAAA+GGG - tig0024694:26966-26985 Msa1419270:CDS 45.0%
AAGGCTTGATCAAAACCCTG+AGG - tig0024694:27087-27106 Msa1419270:CDS 45.0%
CCCTGAGGATAGTATTGTTG+AGG - tig0024694:27102-27121 Msa1419270:CDS 45.0%
TGTCACAGGAGTTTCTCTTC+TGG - tig0024694:27262-27281 Msa1419270:CDS 45.0%
TCTTCTGGACAAGCATTAGG+TGG - tig0024694:27277-27296 Msa1419270:CDS 45.0%
GTGGTCACAAGAGATGTCAT+TGG - tig0024694:27296-27315 Msa1419270:CDS 45.0%
CTAGCCAATGTTGATGTGTC+GGG + tig0024694:27337-27356 None:intergenic 45.0%
CCTAGCCAATGTTGATGTGT+CGG + tig0024694:27338-27357 None:intergenic 45.0%
ATTTGTGTATTCGTCGGAGC+TGG + tig0024694:27448-27467 None:intergenic 45.0%
CTTGAATTTGCACCCCATGT+TGG + tig0024694:27481-27500 None:intergenic 45.0%
AGATGATAGGAAGGTCAAGC+TGG - tig0024694:27642-27661 Msa1419270:CDS 45.0%
TTGGTGGAAGTTCTTCACCA+TGG - tig0024694:27698-27717 Msa1419270:CDS 45.0%
TCTTCACCATGGTTGCAAGT+TGG - tig0024694:27709-27728 Msa1419270:CDS 45.0%
CCAATTCCAACTTGCAACCA+TGG + tig0024694:27718-27737 None:intergenic 45.0%
! CCATGGTTGCAAGTTGGAAT+TGG - tig0024694:27715-27734 Msa1419270:CDS 45.0%
CATATGAGAGCTCATGGCAT+AGG - tig0024694:26404-26423 Msa1419270:CDS 45.0%
! AGTTGCATTTTCCGTGTTCG+AGG + tig0024694:26598-26617 None:intergenic 45.0%
AGGTCGATGCGAACTAAAGT+AGG - tig0024694:26728-26747 Msa1419270:CDS 45.0%
TGATCCTCTTGAGGTTGAAC+CGG - tig0024694:26835-26854 Msa1419270:CDS 45.0%
TTCTTCATCTTTGCTAGCCG+AGG + tig0024694:26873-26892 None:intergenic 45.0%
!! AAGGCCAAAGGTGTTGCAAA+AGG - tig0024694:26965-26984 Msa1419270:CDS 45.0%
!! AGGCCAAAGGTGTTGCAAAA+GGG - tig0024694:26966-26985 Msa1419270:CDS 45.0%
AAGGCTTGATCAAAACCCTG+AGG - tig0024694:27087-27106 Msa1419270:CDS 45.0%
CCCTGAGGATAGTATTGTTG+AGG - tig0024694:27102-27121 Msa1419270:CDS 45.0%
TGTCACAGGAGTTTCTCTTC+TGG - tig0024694:27262-27281 Msa1419270:CDS 45.0%
TCTTCTGGACAAGCATTAGG+TGG - tig0024694:27277-27296 Msa1419270:CDS 45.0%
GTGGTCACAAGAGATGTCAT+TGG - tig0024694:27296-27315 Msa1419270:CDS 45.0%
CTAGCCAATGTTGATGTGTC+GGG + tig0024694:27337-27356 None:intergenic 45.0%
CCTAGCCAATGTTGATGTGT+CGG + tig0024694:27338-27357 None:intergenic 45.0%
ATTTGTGTATTCGTCGGAGC+TGG + tig0024694:27448-27467 None:intergenic 45.0%
CTTGAATTTGCACCCCATGT+TGG + tig0024694:27481-27500 None:intergenic 45.0%
AGATGATAGGAAGGTCAAGC+TGG - tig0024694:27642-27661 Msa1419270:CDS 45.0%
TTGGTGGAAGTTCTTCACCA+TGG - tig0024694:27698-27717 Msa1419270:CDS 45.0%
TCTTCACCATGGTTGCAAGT+TGG - tig0024694:27709-27728 Msa1419270:CDS 45.0%
CCAATTCCAACTTGCAACCA+TGG + tig0024694:27718-27737 None:intergenic 45.0%
! CCATGGTTGCAAGTTGGAAT+TGG - tig0024694:27715-27734 Msa1419270:CDS 45.0%
!! GGATGTGGAAGAGCATTAGG+AGG - tig0024694:26380-26399 Msa1419270:CDS 50.0%
GGAGGACATATGAGAGCTCA+TGG - tig0024694:26398-26417 Msa1419270:CDS 50.0%
! TGTAGGGTGTGTGAGCATTG+TGG - tig0024694:26545-26564 Msa1419270:CDS 50.0%
!! GATGATGGTGATGGCGTCAA+TGG - tig0024694:26674-26693 Msa1419270:CDS 50.0%
TCTTCCGGTTCAACCTCAAG+AGG + tig0024694:26842-26861 None:intergenic 50.0%
ACCGGAAGAATCATGTGCCT+CGG - tig0024694:26853-26872 Msa1419270:CDS 50.0%
TGCACCCGACACATCAACAT+TGG - tig0024694:27330-27349 Msa1419270:CDS 50.0%
! CCGACACATCAACATTGGCT+AGG - tig0024694:27335-27354 Msa1419270:CDS 50.0%
TCGTCGGAGCTGGAAGATTA+AGG + tig0024694:27438-27457 None:intergenic 50.0%
!! GGATGTGGAAGAGCATTAGG+AGG - tig0024694:26380-26399 Msa1419270:CDS 50.0%
GGAGGACATATGAGAGCTCA+TGG - tig0024694:26398-26417 Msa1419270:CDS 50.0%
! TGTAGGGTGTGTGAGCATTG+TGG - tig0024694:26545-26564 Msa1419270:CDS 50.0%
!! GATGATGGTGATGGCGTCAA+TGG - tig0024694:26674-26693 Msa1419270:CDS 50.0%
TCTTCCGGTTCAACCTCAAG+AGG + tig0024694:26842-26861 None:intergenic 50.0%
ACCGGAAGAATCATGTGCCT+CGG - tig0024694:26853-26872 Msa1419270:CDS 50.0%
TGCACCCGACACATCAACAT+TGG - tig0024694:27330-27349 Msa1419270:CDS 50.0%
! CCGACACATCAACATTGGCT+AGG - tig0024694:27335-27354 Msa1419270:CDS 50.0%
TCGTCGGAGCTGGAAGATTA+AGG + tig0024694:27438-27457 None:intergenic 50.0%
! CATGGCGTCAGATTCTGGAG+AGG + tig0024694:26651-26670 None:intergenic 55.0%
CTCTCCAGAATCTGACGCCA+TGG - tig0024694:26649-26668 Msa1419270:CDS 55.0%
TCTGCCATGGCGTCAGATTC+TGG + tig0024694:26656-26675 None:intergenic 55.0%
TCTGACGCCATGGCAGATGA+TGG - tig0024694:26659-26678 Msa1419270:CDS 55.0%
! GCCATGGCAGATGATGGTGA+TGG - tig0024694:26665-26684 Msa1419270:CDS 55.0%
GCCATCACCATCATCTGCCA+TGG + tig0024694:26669-26688 None:intergenic 55.0%
!! ATGGTGATGGCGTCAATGGC+AGG - tig0024694:26678-26697 Msa1419270:CDS 55.0%
GTCAATGGCAGGAGAGGATG+TGG - tig0024694:26689-26708 Msa1419270:CDS 55.0%
AATGGCAGGAGAGGATGTGG+CGG - tig0024694:26692-26711 Msa1419270:CDS 55.0%
!! GTGGCGGGTCGAAAAGGAAA+AGG - tig0024694:26708-26727 Msa1419270:CDS 55.0%
GCCGAGGCACATGATTCTTC+CGG + tig0024694:26857-26876 None:intergenic 55.0%
! CATGGCGTCAGATTCTGGAG+AGG + tig0024694:26651-26670 None:intergenic 55.0%
CTCTCCAGAATCTGACGCCA+TGG - tig0024694:26649-26668 Msa1419270:CDS 55.0%
TCTGCCATGGCGTCAGATTC+TGG + tig0024694:26656-26675 None:intergenic 55.0%
TCTGACGCCATGGCAGATGA+TGG - tig0024694:26659-26678 Msa1419270:CDS 55.0%
! GCCATGGCAGATGATGGTGA+TGG - tig0024694:26665-26684 Msa1419270:CDS 55.0%
GCCATCACCATCATCTGCCA+TGG + tig0024694:26669-26688 None:intergenic 55.0%
!! ATGGTGATGGCGTCAATGGC+AGG - tig0024694:26678-26697 Msa1419270:CDS 55.0%
GTCAATGGCAGGAGAGGATG+TGG - tig0024694:26689-26708 Msa1419270:CDS 55.0%
AATGGCAGGAGAGGATGTGG+CGG - tig0024694:26692-26711 Msa1419270:CDS 55.0%
!! GTGGCGGGTCGAAAAGGAAA+AGG - tig0024694:26708-26727 Msa1419270:CDS 55.0%
GCCGAGGCACATGATTCTTC+CGG + tig0024694:26857-26876 None:intergenic 55.0%
ACGATGATCCAGCGAGCGAC+TGG - tig0024694:26450-26469 Msa1419270:CDS 60.0%
CGATGATCCAGCGAGCGACT+GGG - tig0024694:26451-26470 Msa1419270:CDS 60.0%
GATGGCGTCAATGGCAGGAG+AGG - tig0024694:26683-26702 Msa1419270:CDS 60.0%
ATGGCAGGAGAGGATGTGGC+GGG - tig0024694:26693-26712 Msa1419270:CDS 60.0%
!! GAGGATGTGGCGGGTCGAAA+AGG - tig0024694:26702-26721 Msa1419270:CDS 60.0%
ACGATGATCCAGCGAGCGAC+TGG - tig0024694:26450-26469 Msa1419270:CDS 60.0%
CGATGATCCAGCGAGCGACT+GGG - tig0024694:26451-26470 Msa1419270:CDS 60.0%
GATGGCGTCAATGGCAGGAG+AGG - tig0024694:26683-26702 Msa1419270:CDS 60.0%
ATGGCAGGAGAGGATGTGGC+GGG - tig0024694:26693-26712 Msa1419270:CDS 60.0%
!! GAGGATGTGGCGGGTCGAAA+AGG - tig0024694:26702-26721 Msa1419270:CDS 60.0%
GATCCAGCGAGCGACTGGGA+AGG - tig0024694:26455-26474 Msa1419270:CDS 65.0%
GATCCAGCGAGCGACTGGGA+AGG - tig0024694:26455-26474 Msa1419270:CDS 65.0%
CCACCTTCCCAGTCGCTCGC+TGG + tig0024694:26461-26480 None:intergenic 70.0%
CCAGCGAGCGACTGGGAAGG+TGG - tig0024694:26458-26477 Msa1419270:CDS 70.0%
CCACCTTCCCAGTCGCTCGC+TGG + tig0024694:26461-26480 None:intergenic 70.0%
CCAGCGAGCGACTGGGAAGG+TGG - tig0024694:26458-26477 Msa1419270:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0024694 gene 26314 27768 26314 ID=Msa1419270;Name=Msa1419270
tig0024694 mRNA 26314 27768 26314 ID=Msa1419270-mRNA-1;Parent=Msa1419270;Name=Msa1419270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|484
tig0024694 exon 26314 27768 26314 ID=Msa1419270-mRNA-1:exon:824;Parent=Msa1419270-mRNA-1
tig0024694 CDS 26314 27768 26314 ID=Msa1419270-mRNA-1:cds;Parent=Msa1419270-mRNA-1
Gene Sequence

>Msa1419270

ATGGCTTTGATTGTGGATCAACAATCAAACTTCAAACACTTTTGTAAAATTTGCAAAAAAGGCTTTGGATGTGGAAGAGCATTAGGAGGACATATGAGAGCTCATGGCATAGGCGATGAAACAAGTCAAATGGACAACGATGATCCAGCGAGCGACTGGGAAGGTGGAAATGTCCCACCAAGTAACAAACGTATGTATTCTTTAAGAACAAATCCTAATAAGCTAAAAAGTTGTAGGGTGTGTGAGCATTGTGGCAAAGAATTTTTTTCTTGGAAATCATTCCTCGAACACGGAAAATGCAACTCAGATGACGCGGATGAAGAGTTTCTCATATCCTCTCCAGAATCTGACGCCATGGCAGATGATGGTGATGGCGTCAATGGCAGGAGAGGATGTGGCGGGTCGAAAAGGAAAAGGTCGATGCGAACTAAAGTAGGCAGTTATAATAACAATTATAATAATCCTTCAAGTGAAGAAAAAGATCTAGCAAATTGTTTAATGATGTTGTCCCATGCTATTGTTGATCCTCTTGAGGTTGAACCGGAAGAATCATGTGCCTCGGCTAGCAAAGATGAAGAAAGAAGAAACCCTATGAATTTCATTGCACCATTGTCTTATAGAATTCCCTATGAAAACAACAATAACAACAATAAGGCCAAAGGTGTTGCAAAAGGGTTATTTGAATGCAAAGCATGCAAAAAAGTTTTCAACTCACATCAAGCATTAGGTGGCCATAGAGCAAGTCACAAAAAGGTTAAGGGATGTTTTGCTGCAAGGCTTGATCAAAACCCTGAGGATAGTATTGTTGAGGATGATGTCATCACACAAGATGAATTTTTTCCTTCAAAACCAAACTCATCTCTACAATTTGATCATGGCACTTCCAATAACCCTACATTAATGGCTTCTTCATCCAAGAGAAAATCCAAAGTGCATGAATGCTCAATTTGTCACAGGAGTTTCTCTTCTGGACAAGCATTAGGTGGTCACAAGAGATGTCATTGGATCACATCAAATGCACCCGACACATCAACATTGGCTAGGTTTCAACAATTTCAAGACCAAATAGAACAAATACCTAAATTTGATAACTCTTCTGAGCCAATTGATCTCAAACTTGACCTTAATCTTCCAGCTCCGACGAATACACAAATTTACTTGCAACCAACATGGGGTGCAAATTCAAGTGCAACAAAGGACAACATCATCAAAGAGGATAACAATAGCAAACAAAATCAAAACAATAACCTAGTTGATCAAAATAATGAAACTCAAGAGAACAACAAAAATAACAACCTTAATGCATTGGTACAAAATGTTGATAACGAAGATGATAGGAAGGTCAAGCTGGCAAAATTAAGTGAGTTAAAGGATGTAATTAACATTGGTGGAAGTTCTTCACCATGGTTGCAAGTTGGAATTGGTACAACAACTGATGTGAGGAATGATACGTAA

Protein sequence

>Msa1419270

MALIVDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDETSQMDNDDPASDWEGGNVPPSNKRMYSLRTNPNKLKSCRVCEHCGKEFFSWKSFLEHGKCNSDDADEEFLISSPESDAMADDGDGVNGRRGCGGSKRKRSMRTKVGSYNNNYNNPSSEEKDLANCLMMLSHAIVDPLEVEPEESCASASKDEERRNPMNFIAPLSYRIPYENNNNNNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDQNPEDSIVEDDVITQDEFFPSKPNSSLQFDHGTSNNPTLMASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQDQIEQIPKFDNSSEPIDLKLDLNLPAPTNTQIYLQPTWGANSSATKDNIIKEDNNSKQNQNNNLVDQNNETQENNKNNNLNALVQNVDNEDDRKVKLAKLSELKDVINIGGSSSPWLQVGIGTTTDVRNDT*