Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1419270 | sp|O65499|ZAT3_ARATH | 29.355 | 310 | 130 | 9 | 66 | 375 | 64 | 284 | 3.28e-25 | 108 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1419270 | G7JJH5 | 96.289 | 485 | 17 | 1 | 1 | 484 | 1 | 485 | 0.0 | 971 |
Gene ID | Type | Classification |
---|---|---|
Msa1419270 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1419270 | MtrunA17_Chr4g0012791 | 96.289 | 485 | 17 | 1 | 1 | 484 | 1 | 485 | 0.0 | 971 |
Msa1419270 | MtrunA17_Chr4g0061301 | 39.130 | 161 | 78 | 4 | 224 | 381 | 345 | 488 | 6.05e-25 | 107 |
Msa1419270 | MtrunA17_Chr4g0061301 | 25.193 | 389 | 209 | 13 | 6 | 334 | 4 | 370 | 2.93e-16 | 81.3 |
Msa1419270 | MtrunA17_Chr1g0197281 | 37.021 | 235 | 105 | 11 | 158 | 380 | 98 | 301 | 1.93e-23 | 101 |
Msa1419270 | MtrunA17_Chr5g0425411 | 40.940 | 149 | 67 | 2 | 227 | 375 | 119 | 246 | 3.92e-21 | 92.4 |
Msa1419270 | MtrunA17_Chr7g0231181 | 36.905 | 168 | 48 | 5 | 215 | 382 | 231 | 340 | 3.30e-20 | 92.0 |
Msa1419270 | MtrunA17_Chr5g0448611 | 43.860 | 114 | 50 | 3 | 227 | 335 | 130 | 234 | 5.58e-20 | 90.1 |
Msa1419270 | MtrunA17_Chr1g0207451 | 32.000 | 200 | 52 | 6 | 136 | 335 | 39 | 154 | 1.76e-18 | 85.1 |
Msa1419270 | MtrunA17_Chr2g0320311 | 30.894 | 246 | 109 | 9 | 158 | 380 | 71 | 278 | 2.95e-16 | 79.3 |
Msa1419270 | MtrunA17_Chr1g0180311 | 34.978 | 223 | 106 | 10 | 161 | 380 | 80 | 266 | 4.98e-16 | 78.6 |
Msa1419270 | MtrunA17_Chr4g0027991 | 37.209 | 172 | 70 | 7 | 226 | 380 | 112 | 262 | 1.17e-15 | 77.4 |
Msa1419270 | MtrunA17_Chr3g0134711 | 33.333 | 144 | 59 | 3 | 200 | 335 | 51 | 165 | 6.89e-14 | 71.2 |
Msa1419270 | MtrunA17_Chr1g0188911 | 29.767 | 215 | 117 | 8 | 177 | 379 | 1 | 193 | 2.59e-13 | 68.6 |
Msa1419270 | MtrunA17_Chr1g0188901 | 34.416 | 154 | 74 | 4 | 226 | 379 | 59 | 185 | 9.94e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1419270 | AT1G02040.1 | 36.032 | 247 | 100 | 8 | 136 | 377 | 89 | 282 | 7.77e-30 | 119 |
Msa1419270 | AT4G35280.1 | 29.355 | 310 | 130 | 9 | 66 | 375 | 64 | 284 | 3.33e-26 | 108 |
Msa1419270 | AT2G17180.1 | 30.566 | 265 | 97 | 8 | 71 | 335 | 57 | 234 | 1.11e-24 | 103 |
Msa1419270 | AT5G03510.1 | 32.000 | 275 | 145 | 10 | 132 | 403 | 43 | 278 | 9.39e-23 | 98.6 |
Msa1419270 | AT2G28200.1 | 31.967 | 244 | 115 | 9 | 148 | 380 | 58 | 261 | 2.89e-19 | 88.6 |
Msa1419270 | AT3G10470.1 | 34.091 | 176 | 88 | 3 | 226 | 380 | 181 | 349 | 4.02e-19 | 89.7 |
Msa1419270 | AT3G60580.1 | 30.088 | 226 | 90 | 6 | 156 | 381 | 121 | 278 | 9.95e-19 | 87.0 |
Msa1419270 | AT5G04390.1 | 30.556 | 252 | 116 | 11 | 158 | 380 | 96 | 317 | 1.76e-18 | 87.4 |
Msa1419270 | AT5G56200.1 | 35.172 | 145 | 67 | 2 | 229 | 362 | 344 | 472 | 3.09e-18 | 87.8 |
Msa1419270 | AT1G02030.1 | 28.972 | 321 | 147 | 9 | 78 | 384 | 7 | 260 | 2.44e-17 | 82.4 |
Msa1419270 | AT5G67450.1 | 29.902 | 204 | 90 | 6 | 135 | 335 | 34 | 187 | 7.35e-14 | 71.6 |
Msa1419270 | AT1G49900.1 | 36.364 | 110 | 37 | 3 | 226 | 335 | 192 | 268 | 3.57e-12 | 69.3 |
Find 94 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCCAATAACCCTACATTAA+TGG | 0.180867 | tig0024694:-26865 | Msa1419270:CDS |
ATTTAGGTATTTGTTCTATT+TGG | 0.213723 | tig0024694:+26685 | None:intergenic |
AGCCATTAATGTAGGGTTAT+TGG | 0.241430 | tig0024694:+26863 | None:intergenic |
TCAGAAGAGTTATCAAATTT+AGG | 0.259764 | tig0024694:+26669 | None:intergenic |
TCTGCCATGGCGTCAGATTC+TGG | 0.261055 | tig0024694:+27407 | None:intergenic |
GGCAAAATTAAGTGAGTTAA+AGG | 0.281586 | tig0024694:-26397 | Msa1419270:CDS |
AATGGTGCAATGAAATTCAT+AGG | 0.324641 | tig0024694:+27158 | None:intergenic |
GAATACATACGTTTGTTACT+TGG | 0.350695 | tig0024694:+27569 | None:intergenic |
TTTGGATGTGGAAGAGCATT+AGG | 0.359877 | tig0024694:-27683 | Msa1419270:CDS |
TGTCACAGGAGTTTCTCTTC+TGG | 0.360154 | tig0024694:-26798 | Msa1419270:CDS |
CCATGGTTGCAAGTTGGAAT+TGG | 0.363083 | tig0024694:-26345 | Msa1419270:CDS |
TTCTCTTCTGGACAAGCATT+AGG | 0.372217 | tig0024694:-26786 | Msa1419270:CDS |
TTCAACTCACATCAAGCATT+AGG | 0.388139 | tig0024694:-27041 | Msa1419270:CDS |
TCAAATTGTAGAGATGAGTT+TGG | 0.389591 | tig0024694:+26897 | None:intergenic |
TCGTCGGAGCTGGAAGATTA+AGG | 0.396549 | tig0024694:+26625 | None:intergenic |
AAACAACAATAACAACAATA+AGG | 0.396628 | tig0024694:-27114 | Msa1419270:CDS |
GCCGAGGCACATGATTCTTC+CGG | 0.408850 | tig0024694:+27206 | None:intergenic |
AGGTCAAGTTTGAGATCAAT+TGG | 0.419542 | tig0024694:+26645 | None:intergenic |
ACGATGATCCAGCGAGCGAC+TGG | 0.423324 | tig0024694:-27610 | Msa1419270:CDS |
CCACCTTCCCAGTCGCTCGC+TGG | 0.430046 | tig0024694:+27602 | None:intergenic |
CCATAGAGCAAGTCACAAAA+AGG | 0.435253 | tig0024694:-27015 | Msa1419270:CDS |
AATTGAGCATTCATGCACTT+TGG | 0.442891 | tig0024694:+26821 | None:intergenic |
AAGGCCAAAGGTGTTGCAAA+AGG | 0.447556 | tig0024694:-27095 | Msa1419270:CDS |
GATGAAGAAGCCATTAATGT+AGG | 0.452698 | tig0024694:+26855 | None:intergenic |
ATTTGTGTATTCGTCGGAGC+TGG | 0.459766 | tig0024694:+26615 | None:intergenic |
AAGGATGTAATTAACATTGG+TGG | 0.466872 | tig0024694:-26378 | Msa1419270:CDS |
TGATCCTCTTGAGGTTGAAC+CGG | 0.478585 | tig0024694:-27225 | Msa1419270:CDS |
AGGCGATGAAACAAGTCAAA+TGG | 0.487942 | tig0024694:-27636 | Msa1419270:CDS |
TCCTCAACAATACTATCCTC+AGG | 0.492270 | tig0024694:+26957 | None:intergenic |
AAATTTACTTGCAACCAACA+TGG | 0.497835 | tig0024694:-26596 | Msa1419270:CDS |
GAGGATGTGGCGGGTCGAAA+AGG | 0.501995 | tig0024694:-27358 | Msa1419270:CDS |
GTCAATGGCAGGAGAGGATG+TGG | 0.504371 | tig0024694:-27371 | Msa1419270:CDS |
TGCTATTGTTGATCCTCTTG+AGG | 0.509095 | tig0024694:-27234 | Msa1419270:CDS |
AATTTACTTGCAACCAACAT+GGG | 0.509114 | tig0024694:-26595 | Msa1419270:CDS |
ATGTTGATAACGAAGATGAT+AGG | 0.509440 | tig0024694:-26431 | Msa1419270:CDS |
ACATACGTTTGTTACTTGGT+GGG | 0.515314 | tig0024694:+27573 | None:intergenic |
TACATACGTTTGTTACTTGG+TGG | 0.516103 | tig0024694:+27572 | None:intergenic |
TTAAAGGATGTAATTAACAT+TGG | 0.518467 | tig0024694:-26381 | Msa1419270:CDS |
AAATAACAACCTTAATGCAT+TGG | 0.519304 | tig0024694:-26460 | Msa1419270:CDS |
AAATTGTATGGCTTTGATTG+TGG | 0.523384 | tig0024694:-27753 | None:intergenic |
TTCTTCATCTTTGCTAGCCG+AGG | 0.524004 | tig0024694:+27190 | None:intergenic |
TGCAAATTCAAGTGCAACAA+AGG | 0.526395 | tig0024694:-26571 | Msa1419270:CDS |
GATGATGGTGATGGCGTCAA+TGG | 0.526855 | tig0024694:-27386 | Msa1419270:CDS |
ATGGTGATGGCGTCAATGGC+AGG | 0.531985 | tig0024694:-27382 | Msa1419270:CDS |
AGGTCGATGCGAACTAAAGT+AGG | 0.532729 | tig0024694:-27332 | Msa1419270:CDS |
GTGGTCACAAGAGATGTCAT+TGG | 0.533236 | tig0024694:-26764 | Msa1419270:CDS |
TCTTCACCATGGTTGCAAGT+TGG | 0.534611 | tig0024694:-26351 | Msa1419270:CDS |
AGGCCAAAGGTGTTGCAAAA+GGG | 0.542189 | tig0024694:-27094 | Msa1419270:CDS |
CTTGAATTTGCACCCCATGT+TGG | 0.546976 | tig0024694:+26582 | None:intergenic |
CCAATTCCAACTTGCAACCA+TGG | 0.547493 | tig0024694:+26345 | None:intergenic |
CCAGCGAGCGACTGGGAAGG+TGG | 0.547829 | tig0024694:-27602 | Msa1419270:CDS |
TCATCTCTACAATTTGATCA+TGG | 0.547992 | tig0024694:-26891 | Msa1419270:CDS |
AGATGATAGGAAGGTCAAGC+TGG | 0.549130 | tig0024694:-26418 | Msa1419270:CDS |
ATGAAGAAGCCATTAATGTA+GGG | 0.551910 | tig0024694:+26856 | None:intergenic |
CTAGCCAATGTTGATGTGTC+GGG | 0.553643 | tig0024694:+26726 | None:intergenic |
GGAGGACATATGAGAGCTCA+TGG | 0.556898 | tig0024694:-27662 | Msa1419270:CDS |
GTGGCGGGTCGAAAAGGAAA+AGG | 0.563893 | tig0024694:-27352 | Msa1419270:CDS |
CTCTCCAGAATCTGACGCCA+TGG | 0.566126 | tig0024694:-27411 | Msa1419270:CDS |
CCCTGAGGATAGTATTGTTG+AGG | 0.568665 | tig0024694:-26958 | Msa1419270:CDS |
CATATGAGAGCTCATGGCAT+AGG | 0.569691 | tig0024694:-27656 | Msa1419270:CDS |
ATGGTGCAATGAAATTCATA+GGG | 0.570005 | tig0024694:+27159 | None:intergenic |
AAGTAAATTTGTGTATTCGT+CGG | 0.570443 | tig0024694:+26609 | None:intergenic |
TGGAAATCATTCCTCGAACA+CGG | 0.572286 | tig0024694:-27476 | Msa1419270:CDS |
ACCGGAAGAATCATGTGCCT+CGG | 0.573674 | tig0024694:-27207 | Msa1419270:CDS |
ATGGCAGGAGAGGATGTGGC+GGG | 0.574263 | tig0024694:-27367 | Msa1419270:CDS |
CCTAGCCAATGTTGATGTGT+CGG | 0.581613 | tig0024694:+26725 | None:intergenic |
CAAGAGGATCAACAATAGCA+TGG | 0.581888 | tig0024694:+27237 | None:intergenic |
GCCATCACCATCATCTGCCA+TGG | 0.587259 | tig0024694:+27394 | None:intergenic |
ATGAATGCTCAATTTGTCAC+AGG | 0.591805 | tig0024694:-26812 | Msa1419270:CDS |
TCTTCTGGACAAGCATTAGG+TGG | 0.597423 | tig0024694:-26783 | Msa1419270:CDS |
TGCACCCGACACATCAACAT+TGG | 0.597550 | tig0024694:-26730 | Msa1419270:CDS |
CGATGATCCAGCGAGCGACT+GGG | 0.598139 | tig0024694:-27609 | Msa1419270:CDS |
CCGACACATCAACATTGGCT+AGG | 0.600465 | tig0024694:-26725 | Msa1419270:CDS |
TCTTCCGGTTCAACCTCAAG+AGG | 0.608243 | tig0024694:+27221 | None:intergenic |
AAGAGGATCAACAATAGCAT+GGG | 0.608769 | tig0024694:+27238 | None:intergenic |
TCTGACGCCATGGCAGATGA+TGG | 0.610241 | tig0024694:-27401 | Msa1419270:CDS |
CCTCAACAATACTATCCTCA+GGG | 0.615712 | tig0024694:+26958 | None:intergenic |
AACTCACATCAAGCATTAGG+TGG | 0.619782 | tig0024694:-27038 | Msa1419270:CDS |
AATAACAACAATAAGGCCAA+AGG | 0.626216 | tig0024694:-27107 | Msa1419270:CDS |
GATCCAGCGAGCGACTGGGA+AGG | 0.629491 | tig0024694:-27605 | Msa1419270:CDS |
AATGGCAGGAGAGGATGTGG+CGG | 0.638443 | tig0024694:-27368 | Msa1419270:CDS |
AAAGGACAACATCATCAAAG+AGG | 0.638690 | tig0024694:-26553 | Msa1419270:CDS |
GGATGTGGAAGAGCATTAGG+AGG | 0.639239 | tig0024694:-27680 | Msa1419270:CDS |
ATTTACTTGCAACCAACATG+GGG | 0.643546 | tig0024694:-26594 | Msa1419270:CDS |
TGATAACGAAGATGATAGGA+AGG | 0.644383 | tig0024694:-26427 | Msa1419270:CDS |
TAGGGAATTCTATAAGACAA+TGG | 0.648546 | tig0024694:+27140 | None:intergenic |
GATGGCGTCAATGGCAGGAG+AGG | 0.658068 | tig0024694:-27377 | Msa1419270:CDS |
TTGGTGGAAGTTCTTCACCA+TGG | 0.661371 | tig0024694:-26362 | Msa1419270:CDS |
TTGGTACAACAACTGATGTG+AGG | 0.681780 | tig0024694:-26326 | Msa1419270:CDS |
GCCATGGCAGATGATGGTGA+TGG | 0.691704 | tig0024694:-27395 | Msa1419270:CDS |
TGTAGGGTGTGTGAGCATTG+TGG | 0.711110 | tig0024694:-27515 | Msa1419270:CDS |
CATGGCGTCAGATTCTGGAG+AGG | 0.713259 | tig0024694:+27412 | None:intergenic |
AAAATGCAACTCAGATGACG+CGG | 0.742662 | tig0024694:-27453 | Msa1419270:CDS |
AAGGCTTGATCAAAACCCTG+AGG | 0.762726 | tig0024694:-26973 | Msa1419270:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTGTAAAATTTGCAAAAA+AGG | - | tig0024694:26353-26372 | Msa1419270:CDS | 15.0% |
!!! | TTTTGTAAAATTTGCAAAAA+AGG | - | tig0024694:26353-26372 | Msa1419270:CDS | 15.0% |
!! | TAATAAGCTAAAAAGTTGTA+GGG | - | tig0024694:26529-26548 | Msa1419270:CDS | 20.0% |
!!! | TTGTTATTGTTGTTTTCATA+GGG | + | tig0024694:26941-26960 | None:intergenic | 20.0% |
!! | AAACAACAATAACAACAATA+AGG | - | tig0024694:26946-26965 | Msa1419270:CDS | 20.0% |
!! | ATTTAGGTATTTGTTCTATT+TGG | + | tig0024694:27378-27397 | None:intergenic | 20.0% |
!!! | TTTCATTATTTTGATCAACT+AGG | + | tig0024694:27564-27583 | None:intergenic | 20.0% |
!! | TTAAAGGATGTAATTAACAT+TGG | - | tig0024694:27679-27698 | Msa1419270:CDS | 20.0% |
!! | TAATAAGCTAAAAAGTTGTA+GGG | - | tig0024694:26529-26548 | Msa1419270:CDS | 20.0% |
!!! | TTGTTATTGTTGTTTTCATA+GGG | + | tig0024694:26941-26960 | None:intergenic | 20.0% |
!! | AAACAACAATAACAACAATA+AGG | - | tig0024694:26946-26965 | Msa1419270:CDS | 20.0% |
!! | ATTTAGGTATTTGTTCTATT+TGG | + | tig0024694:27378-27397 | None:intergenic | 20.0% |
!!! | TTTCATTATTTTGATCAACT+AGG | + | tig0024694:27564-27583 | None:intergenic | 20.0% |
!! | TTAAAGGATGTAATTAACAT+TGG | - | tig0024694:27679-27698 | Msa1419270:CDS | 20.0% |
! | AAAATTTGCAAAAAAGGCTT+TGG | - | tig0024694:26359-26378 | Msa1419270:CDS | 25.0% |
!!! | CTACAACTTTTTAGCTTATT+AGG | + | tig0024694:26530-26549 | None:intergenic | 25.0% |
! | CTAATAAGCTAAAAAGTTGT+AGG | - | tig0024694:26528-26547 | Msa1419270:CDS | 25.0% |
!!! | GTTGTTATTGTTGTTTTCAT+AGG | + | tig0024694:26942-26961 | None:intergenic | 25.0% |
! | TCAGAAGAGTTATCAAATTT+AGG | + | tig0024694:27394-27413 | None:intergenic | 25.0% |
! | AAGTAAATTTGTGTATTCGT+CGG | + | tig0024694:27454-27473 | None:intergenic | 25.0% |
! | AAATAACAACCTTAATGCAT+TGG | - | tig0024694:27600-27619 | Msa1419270:CDS | 25.0% |
! | AAAATTTGCAAAAAAGGCTT+TGG | - | tig0024694:26359-26378 | Msa1419270:CDS | 25.0% |
!!! | CTACAACTTTTTAGCTTATT+AGG | + | tig0024694:26530-26549 | None:intergenic | 25.0% |
! | CTAATAAGCTAAAAAGTTGT+AGG | - | tig0024694:26528-26547 | Msa1419270:CDS | 25.0% |
!!! | GTTGTTATTGTTGTTTTCAT+AGG | + | tig0024694:26942-26961 | None:intergenic | 25.0% |
! | TCAGAAGAGTTATCAAATTT+AGG | + | tig0024694:27394-27413 | None:intergenic | 25.0% |
! | AAGTAAATTTGTGTATTCGT+CGG | + | tig0024694:27454-27473 | None:intergenic | 25.0% |
! | AAATAACAACCTTAATGCAT+TGG | - | tig0024694:27600-27619 | Msa1419270:CDS | 25.0% |
! | GAATACATACGTTTGTTACT+TGG | + | tig0024694:26494-26513 | None:intergenic | 30.0% |
!!! | GTGGCAAAGAATTTTTTTCT+TGG | - | tig0024694:26564-26583 | Msa1419270:CDS | 30.0% |
! | AGATCTTTTTCTTCACTTGA+AGG | + | tig0024694:26779-26798 | None:intergenic | 30.0% |
ATGGTGCAATGAAATTCATA+GGG | + | tig0024694:26904-26923 | None:intergenic | 30.0% | |
AATGGTGCAATGAAATTCAT+AGG | + | tig0024694:26905-26924 | None:intergenic | 30.0% | |
TAGGGAATTCTATAAGACAA+TGG | + | tig0024694:26923-26942 | None:intergenic | 30.0% | |
AATAACAACAATAAGGCCAA+AGG | - | tig0024694:26953-26972 | Msa1419270:CDS | 30.0% | |
TCAAATTGTAGAGATGAGTT+TGG | + | tig0024694:27166-27185 | None:intergenic | 30.0% | |
TCATCTCTACAATTTGATCA+TGG | - | tig0024694:27169-27188 | Msa1419270:CDS | 30.0% | |
TTCCAATAACCCTACATTAA+TGG | - | tig0024694:27195-27214 | Msa1419270:CDS | 30.0% | |
ATGAAGAAGCCATTAATGTA+GGG | + | tig0024694:27207-27226 | None:intergenic | 30.0% | |
AAATTTACTTGCAACCAACA+TGG | - | tig0024694:27464-27483 | Msa1419270:CDS | 30.0% | |
AATTTACTTGCAACCAACAT+GGG | - | tig0024694:27465-27484 | Msa1419270:CDS | 30.0% | |
! | CATTTTGTACCAATGCATTA+AGG | + | tig0024694:27612-27631 | None:intergenic | 30.0% |
!! | ATGTTGATAACGAAGATGAT+AGG | - | tig0024694:27629-27648 | Msa1419270:CDS | 30.0% |
GGCAAAATTAAGTGAGTTAA+AGG | - | tig0024694:27663-27682 | Msa1419270:CDS | 30.0% | |
AAGGATGTAATTAACATTGG+TGG | - | tig0024694:27682-27701 | Msa1419270:CDS | 30.0% | |
! | GAATACATACGTTTGTTACT+TGG | + | tig0024694:26494-26513 | None:intergenic | 30.0% |
!!! | GTGGCAAAGAATTTTTTTCT+TGG | - | tig0024694:26564-26583 | Msa1419270:CDS | 30.0% |
! | AGATCTTTTTCTTCACTTGA+AGG | + | tig0024694:26779-26798 | None:intergenic | 30.0% |
ATGGTGCAATGAAATTCATA+GGG | + | tig0024694:26904-26923 | None:intergenic | 30.0% | |
AATGGTGCAATGAAATTCAT+AGG | + | tig0024694:26905-26924 | None:intergenic | 30.0% | |
TAGGGAATTCTATAAGACAA+TGG | + | tig0024694:26923-26942 | None:intergenic | 30.0% | |
AATAACAACAATAAGGCCAA+AGG | - | tig0024694:26953-26972 | Msa1419270:CDS | 30.0% | |
TCAAATTGTAGAGATGAGTT+TGG | + | tig0024694:27166-27185 | None:intergenic | 30.0% | |
TCATCTCTACAATTTGATCA+TGG | - | tig0024694:27169-27188 | Msa1419270:CDS | 30.0% | |
TTCCAATAACCCTACATTAA+TGG | - | tig0024694:27195-27214 | Msa1419270:CDS | 30.0% | |
ATGAAGAAGCCATTAATGTA+GGG | + | tig0024694:27207-27226 | None:intergenic | 30.0% | |
AAATTTACTTGCAACCAACA+TGG | - | tig0024694:27464-27483 | Msa1419270:CDS | 30.0% | |
AATTTACTTGCAACCAACAT+GGG | - | tig0024694:27465-27484 | Msa1419270:CDS | 30.0% | |
! | CATTTTGTACCAATGCATTA+AGG | + | tig0024694:27612-27631 | None:intergenic | 30.0% |
!! | ATGTTGATAACGAAGATGAT+AGG | - | tig0024694:27629-27648 | Msa1419270:CDS | 30.0% |
GGCAAAATTAAGTGAGTTAA+AGG | - | tig0024694:27663-27682 | Msa1419270:CDS | 30.0% | |
AAGGATGTAATTAACATTGG+TGG | - | tig0024694:27682-27701 | Msa1419270:CDS | 30.0% | |
! | ACATACGTTTGTTACTTGGT+GGG | + | tig0024694:26490-26509 | None:intergenic | 35.0% |
! | TACATACGTTTGTTACTTGG+TGG | + | tig0024694:26491-26510 | None:intergenic | 35.0% |
AAGAGGATCAACAATAGCAT+GGG | + | tig0024694:26825-26844 | None:intergenic | 35.0% | |
TTCAACTCACATCAAGCATT+AGG | - | tig0024694:27019-27038 | Msa1419270:CDS | 35.0% | |
AGCAAGTCACAAAAAGGTTA+AGG | - | tig0024694:27051-27070 | Msa1419270:CDS | 35.0% | |
GCAAGTCACAAAAAGGTTAA+GGG | - | tig0024694:27052-27071 | Msa1419270:CDS | 35.0% | |
!!! | AGAGATGAGTTTGGTTTTGA+AGG | + | tig0024694:27157-27176 | None:intergenic | 35.0% |
AGCCATTAATGTAGGGTTAT+TGG | + | tig0024694:27200-27219 | None:intergenic | 35.0% | |
GATGAAGAAGCCATTAATGT+AGG | + | tig0024694:27208-27227 | None:intergenic | 35.0% | |
! | ATGCACTTTGGATTTTCTCT+TGG | + | tig0024694:27230-27249 | None:intergenic | 35.0% |
AATTGAGCATTCATGCACTT+TGG | + | tig0024694:27242-27261 | None:intergenic | 35.0% | |
ATGAATGCTCAATTTGTCAC+AGG | - | tig0024694:27248-27267 | Msa1419270:CDS | 35.0% | |
! | AGGTCAAGTTTGAGATCAAT+TGG | + | tig0024694:27418-27437 | None:intergenic | 35.0% |
ATTTACTTGCAACCAACATG+GGG | - | tig0024694:27466-27485 | Msa1419270:CDS | 35.0% | |
TGCAAATTCAAGTGCAACAA+AGG | - | tig0024694:27489-27508 | Msa1419270:CDS | 35.0% | |
AAAGGACAACATCATCAAAG+AGG | - | tig0024694:27507-27526 | Msa1419270:CDS | 35.0% | |
! | TGATAACGAAGATGATAGGA+AGG | - | tig0024694:27633-27652 | Msa1419270:CDS | 35.0% |
! | ACATACGTTTGTTACTTGGT+GGG | + | tig0024694:26490-26509 | None:intergenic | 35.0% |
! | TACATACGTTTGTTACTTGG+TGG | + | tig0024694:26491-26510 | None:intergenic | 35.0% |
AAGAGGATCAACAATAGCAT+GGG | + | tig0024694:26825-26844 | None:intergenic | 35.0% | |
TTCAACTCACATCAAGCATT+AGG | - | tig0024694:27019-27038 | Msa1419270:CDS | 35.0% | |
AGCAAGTCACAAAAAGGTTA+AGG | - | tig0024694:27051-27070 | Msa1419270:CDS | 35.0% | |
GCAAGTCACAAAAAGGTTAA+GGG | - | tig0024694:27052-27071 | Msa1419270:CDS | 35.0% | |
!!! | AGAGATGAGTTTGGTTTTGA+AGG | + | tig0024694:27157-27176 | None:intergenic | 35.0% |
AGCCATTAATGTAGGGTTAT+TGG | + | tig0024694:27200-27219 | None:intergenic | 35.0% | |
GATGAAGAAGCCATTAATGT+AGG | + | tig0024694:27208-27227 | None:intergenic | 35.0% | |
! | ATGCACTTTGGATTTTCTCT+TGG | + | tig0024694:27230-27249 | None:intergenic | 35.0% |
AATTGAGCATTCATGCACTT+TGG | + | tig0024694:27242-27261 | None:intergenic | 35.0% | |
ATGAATGCTCAATTTGTCAC+AGG | - | tig0024694:27248-27267 | Msa1419270:CDS | 35.0% | |
! | AGGTCAAGTTTGAGATCAAT+TGG | + | tig0024694:27418-27437 | None:intergenic | 35.0% |
ATTTACTTGCAACCAACATG+GGG | - | tig0024694:27466-27485 | Msa1419270:CDS | 35.0% | |
TGCAAATTCAAGTGCAACAA+AGG | - | tig0024694:27489-27508 | Msa1419270:CDS | 35.0% | |
AAAGGACAACATCATCAAAG+AGG | - | tig0024694:27507-27526 | Msa1419270:CDS | 35.0% | |
! | TGATAACGAAGATGATAGGA+AGG | - | tig0024694:27633-27652 | Msa1419270:CDS | 35.0% |
!! | TGCAAAAAAGGCTTTGGATG+TGG | - | tig0024694:26365-26384 | Msa1419270:CDS | 40.0% |
!! | TTTGGATGTGGAAGAGCATT+AGG | - | tig0024694:26377-26396 | Msa1419270:CDS | 40.0% |
AGGCGATGAAACAAGTCAAA+TGG | - | tig0024694:26424-26443 | Msa1419270:CDS | 40.0% | |
TGGAAATCATTCCTCGAACA+CGG | - | tig0024694:26584-26603 | Msa1419270:CDS | 40.0% | |
AAAATGCAACTCAGATGACG+CGG | - | tig0024694:26607-26626 | Msa1419270:CDS | 40.0% | |
CAAGAGGATCAACAATAGCA+TGG | + | tig0024694:26826-26845 | None:intergenic | 40.0% | |
TGCTATTGTTGATCCTCTTG+AGG | - | tig0024694:26826-26845 | Msa1419270:CDS | 40.0% | |
! | TAACCCTTTTGCAACACCTT+TGG | + | tig0024694:26972-26991 | None:intergenic | 40.0% |
AACTCACATCAAGCATTAGG+TGG | - | tig0024694:27022-27041 | Msa1419270:CDS | 40.0% | |
!!! | CCTTTTTGTGACTTGCTCTA+TGG | + | tig0024694:27048-27067 | None:intergenic | 40.0% |
CCATAGAGCAAGTCACAAAA+AGG | - | tig0024694:27045-27064 | Msa1419270:CDS | 40.0% | |
! | TTAAGGGATGTTTTGCTGCA+AGG | - | tig0024694:27068-27087 | Msa1419270:CDS | 40.0% |
CCTCAACAATACTATCCTCA+GGG | + | tig0024694:27105-27124 | None:intergenic | 40.0% | |
TCCTCAACAATACTATCCTC+AGG | + | tig0024694:27106-27125 | None:intergenic | 40.0% | |
TTCTCTTCTGGACAAGCATT+AGG | - | tig0024694:27274-27293 | Msa1419270:CDS | 40.0% | |
TTGGTACAACAACTGATGTG+AGG | - | tig0024694:27734-27753 | Msa1419270:CDS | 40.0% | |
!! | TGCAAAAAAGGCTTTGGATG+TGG | - | tig0024694:26365-26384 | Msa1419270:CDS | 40.0% |
!! | TTTGGATGTGGAAGAGCATT+AGG | - | tig0024694:26377-26396 | Msa1419270:CDS | 40.0% |
AGGCGATGAAACAAGTCAAA+TGG | - | tig0024694:26424-26443 | Msa1419270:CDS | 40.0% | |
TGGAAATCATTCCTCGAACA+CGG | - | tig0024694:26584-26603 | Msa1419270:CDS | 40.0% | |
AAAATGCAACTCAGATGACG+CGG | - | tig0024694:26607-26626 | Msa1419270:CDS | 40.0% | |
CAAGAGGATCAACAATAGCA+TGG | + | tig0024694:26826-26845 | None:intergenic | 40.0% | |
TGCTATTGTTGATCCTCTTG+AGG | - | tig0024694:26826-26845 | Msa1419270:CDS | 40.0% | |
! | TAACCCTTTTGCAACACCTT+TGG | + | tig0024694:26972-26991 | None:intergenic | 40.0% |
AACTCACATCAAGCATTAGG+TGG | - | tig0024694:27022-27041 | Msa1419270:CDS | 40.0% | |
!!! | CCTTTTTGTGACTTGCTCTA+TGG | + | tig0024694:27048-27067 | None:intergenic | 40.0% |
CCATAGAGCAAGTCACAAAA+AGG | - | tig0024694:27045-27064 | Msa1419270:CDS | 40.0% | |
! | TTAAGGGATGTTTTGCTGCA+AGG | - | tig0024694:27068-27087 | Msa1419270:CDS | 40.0% |
CCTCAACAATACTATCCTCA+GGG | + | tig0024694:27105-27124 | None:intergenic | 40.0% | |
TCCTCAACAATACTATCCTC+AGG | + | tig0024694:27106-27125 | None:intergenic | 40.0% | |
TTCTCTTCTGGACAAGCATT+AGG | - | tig0024694:27274-27293 | Msa1419270:CDS | 40.0% | |
TTGGTACAACAACTGATGTG+AGG | - | tig0024694:27734-27753 | Msa1419270:CDS | 40.0% | |
CATATGAGAGCTCATGGCAT+AGG | - | tig0024694:26404-26423 | Msa1419270:CDS | 45.0% | |
! | AGTTGCATTTTCCGTGTTCG+AGG | + | tig0024694:26598-26617 | None:intergenic | 45.0% |
AGGTCGATGCGAACTAAAGT+AGG | - | tig0024694:26728-26747 | Msa1419270:CDS | 45.0% | |
TGATCCTCTTGAGGTTGAAC+CGG | - | tig0024694:26835-26854 | Msa1419270:CDS | 45.0% | |
TTCTTCATCTTTGCTAGCCG+AGG | + | tig0024694:26873-26892 | None:intergenic | 45.0% | |
!! | AAGGCCAAAGGTGTTGCAAA+AGG | - | tig0024694:26965-26984 | Msa1419270:CDS | 45.0% |
!! | AGGCCAAAGGTGTTGCAAAA+GGG | - | tig0024694:26966-26985 | Msa1419270:CDS | 45.0% |
AAGGCTTGATCAAAACCCTG+AGG | - | tig0024694:27087-27106 | Msa1419270:CDS | 45.0% | |
CCCTGAGGATAGTATTGTTG+AGG | - | tig0024694:27102-27121 | Msa1419270:CDS | 45.0% | |
TGTCACAGGAGTTTCTCTTC+TGG | - | tig0024694:27262-27281 | Msa1419270:CDS | 45.0% | |
TCTTCTGGACAAGCATTAGG+TGG | - | tig0024694:27277-27296 | Msa1419270:CDS | 45.0% | |
GTGGTCACAAGAGATGTCAT+TGG | - | tig0024694:27296-27315 | Msa1419270:CDS | 45.0% | |
CTAGCCAATGTTGATGTGTC+GGG | + | tig0024694:27337-27356 | None:intergenic | 45.0% | |
CCTAGCCAATGTTGATGTGT+CGG | + | tig0024694:27338-27357 | None:intergenic | 45.0% | |
ATTTGTGTATTCGTCGGAGC+TGG | + | tig0024694:27448-27467 | None:intergenic | 45.0% | |
CTTGAATTTGCACCCCATGT+TGG | + | tig0024694:27481-27500 | None:intergenic | 45.0% | |
AGATGATAGGAAGGTCAAGC+TGG | - | tig0024694:27642-27661 | Msa1419270:CDS | 45.0% | |
TTGGTGGAAGTTCTTCACCA+TGG | - | tig0024694:27698-27717 | Msa1419270:CDS | 45.0% | |
TCTTCACCATGGTTGCAAGT+TGG | - | tig0024694:27709-27728 | Msa1419270:CDS | 45.0% | |
CCAATTCCAACTTGCAACCA+TGG | + | tig0024694:27718-27737 | None:intergenic | 45.0% | |
! | CCATGGTTGCAAGTTGGAAT+TGG | - | tig0024694:27715-27734 | Msa1419270:CDS | 45.0% |
CATATGAGAGCTCATGGCAT+AGG | - | tig0024694:26404-26423 | Msa1419270:CDS | 45.0% | |
! | AGTTGCATTTTCCGTGTTCG+AGG | + | tig0024694:26598-26617 | None:intergenic | 45.0% |
AGGTCGATGCGAACTAAAGT+AGG | - | tig0024694:26728-26747 | Msa1419270:CDS | 45.0% | |
TGATCCTCTTGAGGTTGAAC+CGG | - | tig0024694:26835-26854 | Msa1419270:CDS | 45.0% | |
TTCTTCATCTTTGCTAGCCG+AGG | + | tig0024694:26873-26892 | None:intergenic | 45.0% | |
!! | AAGGCCAAAGGTGTTGCAAA+AGG | - | tig0024694:26965-26984 | Msa1419270:CDS | 45.0% |
!! | AGGCCAAAGGTGTTGCAAAA+GGG | - | tig0024694:26966-26985 | Msa1419270:CDS | 45.0% |
AAGGCTTGATCAAAACCCTG+AGG | - | tig0024694:27087-27106 | Msa1419270:CDS | 45.0% | |
CCCTGAGGATAGTATTGTTG+AGG | - | tig0024694:27102-27121 | Msa1419270:CDS | 45.0% | |
TGTCACAGGAGTTTCTCTTC+TGG | - | tig0024694:27262-27281 | Msa1419270:CDS | 45.0% | |
TCTTCTGGACAAGCATTAGG+TGG | - | tig0024694:27277-27296 | Msa1419270:CDS | 45.0% | |
GTGGTCACAAGAGATGTCAT+TGG | - | tig0024694:27296-27315 | Msa1419270:CDS | 45.0% | |
CTAGCCAATGTTGATGTGTC+GGG | + | tig0024694:27337-27356 | None:intergenic | 45.0% | |
CCTAGCCAATGTTGATGTGT+CGG | + | tig0024694:27338-27357 | None:intergenic | 45.0% | |
ATTTGTGTATTCGTCGGAGC+TGG | + | tig0024694:27448-27467 | None:intergenic | 45.0% | |
CTTGAATTTGCACCCCATGT+TGG | + | tig0024694:27481-27500 | None:intergenic | 45.0% | |
AGATGATAGGAAGGTCAAGC+TGG | - | tig0024694:27642-27661 | Msa1419270:CDS | 45.0% | |
TTGGTGGAAGTTCTTCACCA+TGG | - | tig0024694:27698-27717 | Msa1419270:CDS | 45.0% | |
TCTTCACCATGGTTGCAAGT+TGG | - | tig0024694:27709-27728 | Msa1419270:CDS | 45.0% | |
CCAATTCCAACTTGCAACCA+TGG | + | tig0024694:27718-27737 | None:intergenic | 45.0% | |
! | CCATGGTTGCAAGTTGGAAT+TGG | - | tig0024694:27715-27734 | Msa1419270:CDS | 45.0% |
!! | GGATGTGGAAGAGCATTAGG+AGG | - | tig0024694:26380-26399 | Msa1419270:CDS | 50.0% |
GGAGGACATATGAGAGCTCA+TGG | - | tig0024694:26398-26417 | Msa1419270:CDS | 50.0% | |
! | TGTAGGGTGTGTGAGCATTG+TGG | - | tig0024694:26545-26564 | Msa1419270:CDS | 50.0% |
!! | GATGATGGTGATGGCGTCAA+TGG | - | tig0024694:26674-26693 | Msa1419270:CDS | 50.0% |
TCTTCCGGTTCAACCTCAAG+AGG | + | tig0024694:26842-26861 | None:intergenic | 50.0% | |
ACCGGAAGAATCATGTGCCT+CGG | - | tig0024694:26853-26872 | Msa1419270:CDS | 50.0% | |
TGCACCCGACACATCAACAT+TGG | - | tig0024694:27330-27349 | Msa1419270:CDS | 50.0% | |
! | CCGACACATCAACATTGGCT+AGG | - | tig0024694:27335-27354 | Msa1419270:CDS | 50.0% |
TCGTCGGAGCTGGAAGATTA+AGG | + | tig0024694:27438-27457 | None:intergenic | 50.0% | |
!! | GGATGTGGAAGAGCATTAGG+AGG | - | tig0024694:26380-26399 | Msa1419270:CDS | 50.0% |
GGAGGACATATGAGAGCTCA+TGG | - | tig0024694:26398-26417 | Msa1419270:CDS | 50.0% | |
! | TGTAGGGTGTGTGAGCATTG+TGG | - | tig0024694:26545-26564 | Msa1419270:CDS | 50.0% |
!! | GATGATGGTGATGGCGTCAA+TGG | - | tig0024694:26674-26693 | Msa1419270:CDS | 50.0% |
TCTTCCGGTTCAACCTCAAG+AGG | + | tig0024694:26842-26861 | None:intergenic | 50.0% | |
ACCGGAAGAATCATGTGCCT+CGG | - | tig0024694:26853-26872 | Msa1419270:CDS | 50.0% | |
TGCACCCGACACATCAACAT+TGG | - | tig0024694:27330-27349 | Msa1419270:CDS | 50.0% | |
! | CCGACACATCAACATTGGCT+AGG | - | tig0024694:27335-27354 | Msa1419270:CDS | 50.0% |
TCGTCGGAGCTGGAAGATTA+AGG | + | tig0024694:27438-27457 | None:intergenic | 50.0% | |
! | CATGGCGTCAGATTCTGGAG+AGG | + | tig0024694:26651-26670 | None:intergenic | 55.0% |
CTCTCCAGAATCTGACGCCA+TGG | - | tig0024694:26649-26668 | Msa1419270:CDS | 55.0% | |
TCTGCCATGGCGTCAGATTC+TGG | + | tig0024694:26656-26675 | None:intergenic | 55.0% | |
TCTGACGCCATGGCAGATGA+TGG | - | tig0024694:26659-26678 | Msa1419270:CDS | 55.0% | |
! | GCCATGGCAGATGATGGTGA+TGG | - | tig0024694:26665-26684 | Msa1419270:CDS | 55.0% |
GCCATCACCATCATCTGCCA+TGG | + | tig0024694:26669-26688 | None:intergenic | 55.0% | |
!! | ATGGTGATGGCGTCAATGGC+AGG | - | tig0024694:26678-26697 | Msa1419270:CDS | 55.0% |
GTCAATGGCAGGAGAGGATG+TGG | - | tig0024694:26689-26708 | Msa1419270:CDS | 55.0% | |
AATGGCAGGAGAGGATGTGG+CGG | - | tig0024694:26692-26711 | Msa1419270:CDS | 55.0% | |
!! | GTGGCGGGTCGAAAAGGAAA+AGG | - | tig0024694:26708-26727 | Msa1419270:CDS | 55.0% |
GCCGAGGCACATGATTCTTC+CGG | + | tig0024694:26857-26876 | None:intergenic | 55.0% | |
! | CATGGCGTCAGATTCTGGAG+AGG | + | tig0024694:26651-26670 | None:intergenic | 55.0% |
CTCTCCAGAATCTGACGCCA+TGG | - | tig0024694:26649-26668 | Msa1419270:CDS | 55.0% | |
TCTGCCATGGCGTCAGATTC+TGG | + | tig0024694:26656-26675 | None:intergenic | 55.0% | |
TCTGACGCCATGGCAGATGA+TGG | - | tig0024694:26659-26678 | Msa1419270:CDS | 55.0% | |
! | GCCATGGCAGATGATGGTGA+TGG | - | tig0024694:26665-26684 | Msa1419270:CDS | 55.0% |
GCCATCACCATCATCTGCCA+TGG | + | tig0024694:26669-26688 | None:intergenic | 55.0% | |
!! | ATGGTGATGGCGTCAATGGC+AGG | - | tig0024694:26678-26697 | Msa1419270:CDS | 55.0% |
GTCAATGGCAGGAGAGGATG+TGG | - | tig0024694:26689-26708 | Msa1419270:CDS | 55.0% | |
AATGGCAGGAGAGGATGTGG+CGG | - | tig0024694:26692-26711 | Msa1419270:CDS | 55.0% | |
!! | GTGGCGGGTCGAAAAGGAAA+AGG | - | tig0024694:26708-26727 | Msa1419270:CDS | 55.0% |
GCCGAGGCACATGATTCTTC+CGG | + | tig0024694:26857-26876 | None:intergenic | 55.0% | |
ACGATGATCCAGCGAGCGAC+TGG | - | tig0024694:26450-26469 | Msa1419270:CDS | 60.0% | |
CGATGATCCAGCGAGCGACT+GGG | - | tig0024694:26451-26470 | Msa1419270:CDS | 60.0% | |
GATGGCGTCAATGGCAGGAG+AGG | - | tig0024694:26683-26702 | Msa1419270:CDS | 60.0% | |
ATGGCAGGAGAGGATGTGGC+GGG | - | tig0024694:26693-26712 | Msa1419270:CDS | 60.0% | |
!! | GAGGATGTGGCGGGTCGAAA+AGG | - | tig0024694:26702-26721 | Msa1419270:CDS | 60.0% |
ACGATGATCCAGCGAGCGAC+TGG | - | tig0024694:26450-26469 | Msa1419270:CDS | 60.0% | |
CGATGATCCAGCGAGCGACT+GGG | - | tig0024694:26451-26470 | Msa1419270:CDS | 60.0% | |
GATGGCGTCAATGGCAGGAG+AGG | - | tig0024694:26683-26702 | Msa1419270:CDS | 60.0% | |
ATGGCAGGAGAGGATGTGGC+GGG | - | tig0024694:26693-26712 | Msa1419270:CDS | 60.0% | |
!! | GAGGATGTGGCGGGTCGAAA+AGG | - | tig0024694:26702-26721 | Msa1419270:CDS | 60.0% |
GATCCAGCGAGCGACTGGGA+AGG | - | tig0024694:26455-26474 | Msa1419270:CDS | 65.0% | |
GATCCAGCGAGCGACTGGGA+AGG | - | tig0024694:26455-26474 | Msa1419270:CDS | 65.0% | |
CCACCTTCCCAGTCGCTCGC+TGG | + | tig0024694:26461-26480 | None:intergenic | 70.0% | |
CCAGCGAGCGACTGGGAAGG+TGG | - | tig0024694:26458-26477 | Msa1419270:CDS | 70.0% | |
CCACCTTCCCAGTCGCTCGC+TGG | + | tig0024694:26461-26480 | None:intergenic | 70.0% | |
CCAGCGAGCGACTGGGAAGG+TGG | - | tig0024694:26458-26477 | Msa1419270:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0024694 | gene | 26314 | 27768 | 26314 | ID=Msa1419270;Name=Msa1419270 |
tig0024694 | mRNA | 26314 | 27768 | 26314 | ID=Msa1419270-mRNA-1;Parent=Msa1419270;Name=Msa1419270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|484 |
tig0024694 | exon | 26314 | 27768 | 26314 | ID=Msa1419270-mRNA-1:exon:824;Parent=Msa1419270-mRNA-1 |
tig0024694 | CDS | 26314 | 27768 | 26314 | ID=Msa1419270-mRNA-1:cds;Parent=Msa1419270-mRNA-1 |
Gene Sequence |
Protein sequence |