AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1423210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423210 MtrunA17_Chr8g0384671 96.346 301 9 1 1 301 1 299 0.0 581
Msa1423210 MtrunA17_Chr2g0293381 76.689 296 65 2 1 294 1 294 4.92e-132 377
Msa1423210 MtrunA17_Chr5g0401061 52.560 293 134 5 1 292 1 289 2.11e-64 204
Msa1423210 MtrunA17_Chr4g0054131 49.191 309 135 7 1 292 1 304 4.91e-64 204
Msa1423210 MtrunA17_Chr8g0383821 67.500 120 37 1 1 120 1 118 2.04e-53 171
Msa1423210 MtrunA17_Chr1g0195251 62.295 122 43 2 125 246 295 413 7.90e-41 147
Msa1423210 MtrunA17_Chr8g0342871 40.314 191 103 4 1 187 1 184 3.23e-34 126
Msa1423210 MtrunA17_Chr1g0166681 64.368 87 27 2 1 87 1 83 6.73e-30 112
Msa1423210 MtrunA17_Chr2g0329921 34.545 220 103 5 1 190 1 209 8.96e-29 112
Msa1423210 MtrunA17_Chr1g0195261 80.000 50 10 0 1 50 1 50 8.68e-23 89.0
Msa1423210 MtrunA17_Chr8g0384681 51.087 92 16 1 124 215 36 98 3.35e-20 83.6
Msa1423210 MtrunA17_Chr2g0293401 70.000 60 16 2 61 120 3 60 1.55e-16 72.8
Msa1423210 MtrunA17_Chr8g0383841 66.667 87 20 1 187 264 2 88 1.26e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423210 AT1G49950.3 60.000 305 109 7 1 299 1 298 9.68e-84 254
Msa1423210 AT1G49950.1 60.000 305 109 7 1 299 1 298 9.68e-84 254
Msa1423210 AT1G49950.2 60.000 305 109 7 1 299 1 298 9.68e-84 254
Msa1423210 AT5G67580.2 49.495 297 141 5 1 292 1 293 8.26e-57 185
Msa1423210 AT5G67580.1 49.495 297 141 5 1 292 1 293 8.26e-57 185
Msa1423210 AT3G49850.1 48.185 303 142 6 1 297 1 294 1.22e-55 182
Msa1423210 AT3G49850.2 48.185 303 142 6 1 297 1 294 1.22e-55 182
Msa1423210 AT1G72740.2 35.688 269 153 5 1 269 1 249 8.32e-35 127
Msa1423210 AT1G72740.1 35.273 275 152 6 1 269 1 255 1.73e-32 122
Msa1423210 AT1G17520.4 36.869 198 108 4 1 187 1 192 1.98e-26 105
Msa1423210 AT1G17520.3 37.186 199 107 5 1 187 1 193 1.06e-25 103
Msa1423210 AT1G17520.1 38.021 192 102 4 1 181 1 186 1.19e-25 103
Msa1423210 AT1G17520.2 38.342 193 101 5 1 181 1 187 6.40e-25 102
Msa1423210 AT1G54260.1 47.826 69 36 0 124 192 6 74 8.69e-13 66.2

Find 139 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGCTTTGTTTGAACTTAA+AGG 0.147930 tig0025516:-21289 None:intergenic
TGAATTCATTATTACTTCTT+TGG 0.224124 tig0025516:+21393 Msa1423210:three_prime_UTR
ACACCCACCCATGTTATTAT+TGG 0.233775 tig0025516:+20143 Msa1423210:CDS
TTGCAGGCCTAGCCTTTATC+AGG 0.256556 tig0025516:+21097 Msa1423210:three_prime_UTR
GAGCAGATGGTTAGATGAAT+TGG 0.277170 tig0025516:+21205 Msa1423210:three_prime_UTR
GAGCTCCAGGGAGAAGTCTA+AGG 0.278068 tig0025516:+16753 Msa1423210:CDS
GCAGAAAATCTCTATGAAAT+TGG 0.285616 tig0025516:+20173 Msa1423210:CDS
GTTCAAACAAAGCTTTAGTT+TGG 0.288426 tig0025516:+21296 Msa1423210:three_prime_UTR
ATGGCTATCACTGCCGTTAC+TGG 0.296926 tig0025516:+16826 Msa1423210:CDS
CAGATTAGATAACCTTATAT+TGG 0.305916 tig0025516:+17815 Msa1423210:intron
ATATGCTTGTTGTTGTTTAT+AGG 0.309825 tig0025516:+21148 Msa1423210:three_prime_UTR
TGTGGTTTGGATAGGATAAA+TGG 0.317432 tig0025516:+16701 Msa1423210:intron
AGTCTGCCGGTGGCCGGTAT+TGG 0.318430 tig0025516:-19083 None:intergenic
CCAAGCATGGGGTGGGAAAA+TGG 0.324906 tig0025516:+16498 Msa1423210:CDS
AATTTCTTCGTCACTCTAGA+TGG 0.325654 tig0025516:+16418 Msa1423210:exon
TAGATATAGCTTCCAATATA+AGG 0.325779 tig0025516:-17827 None:intergenic
TATAGATAATGGCTCTTTGC+AGG 0.329967 tig0025516:+21081 Msa1423210:three_prime_UTR
GTTGTAGTGTTCCATGGATT+AGG 0.336859 tig0025516:+21457 Msa1423210:three_prime_UTR
AGAGACATGCCGCACATTCC+TGG 0.352882 tig0025516:+16898 Msa1423210:CDS
AATTTGAGTGTGACGGGAAA+TGG 0.361800 tig0025516:+16727 Msa1423210:CDS
CGGGAAATGGATCGAGCTCC+AGG 0.365659 tig0025516:+16740 Msa1423210:CDS
AAATCTATCTCAGACTTTGT+AGG 0.366127 tig0025516:-20216 None:intergenic
TCTGATGTCCATTTCTGCTT+AGG 0.367914 tig0025516:-16446 None:intergenic
GAATCATCCGGTACCGAAAC+AGG 0.369840 tig0025516:+16792 Msa1423210:CDS
TTGCAATAATCCCCTGATAA+AGG 0.375210 tig0025516:-21109 None:intergenic
TTCACATTATATATAGATAA+TGG 0.385922 tig0025516:+21070 Msa1423210:three_prime_UTR
TCAAGTATAAGCCTCTTAGA+AGG 0.400348 tig0025516:+21634 Msa1423210:three_prime_UTR
TTCCTGGTCCTGGTCCAAAA+AGG 0.410764 tig0025516:+16914 Msa1423210:CDS
TTCAGGTGAAACGCAGGTAT+AGG 0.416662 tig0025516:+20085 Msa1423210:intron
ACTACACAATTCCTTCTAAG+AGG 0.426259 tig0025516:-21645 None:intergenic
GTCACTCATTTATGAACTGC+TGG 0.432720 tig0025516:+21506 Msa1423210:three_prime_UTR
AACAAGACACGATTAAATTC+AGG 0.435715 tig0025516:-16539 None:intergenic
CTTCCTCTGTCTGAATATGC+AGG 0.439039 tig0025516:-20120 None:intergenic
TGGGTGCTCCTAAGCAGAAA+TGG 0.442291 tig0025516:+16438 Msa1423210:CDS
GAAACAGGATGACAACTCTA+TGG 0.446572 tig0025516:+16807 Msa1423210:CDS
GAGATAGAGAGGTGCATGAA+GGG 0.448725 tig0025516:+21563 Msa1423210:three_prime_UTR
ATCTATATATAATGTGAATC+CGG 0.452423 tig0025516:-21065 None:intergenic
GATTCACGCTAGTTACTGAT+TGG 0.455690 tig0025516:+21479 Msa1423210:three_prime_UTR
AAAACACTGTCTTGATCAAA+GGG 0.459584 tig0025516:+21433 Msa1423210:three_prime_UTR
TTGTCATCCTGTTTCGGTAC+CGG 0.459989 tig0025516:-16799 None:intergenic
ATAGAGTTGTCATCCTGTTT+CGG 0.460910 tig0025516:-16805 None:intergenic
TGGAGAAATTTGAGTGTGAC+GGG 0.461904 tig0025516:+16721 Msa1423210:CDS
GAGGAAGCAGCTCTTAAAGC+TGG 0.470003 tig0025516:+16470 Msa1423210:CDS
AGTCAAATTGATAAATGAAA+AGG 0.471440 tig0025516:-21346 None:intergenic
CGCCATAGCAGAAGCTGAAG+AGG 0.472911 tig0025516:+20317 Msa1423210:CDS
CTCTTGAGACTTGAAGAGGC+TGG 0.475264 tig0025516:-16879 None:intergenic
AACTATTGCTTCTTTCATAG+AGG 0.478041 tig0025516:+17881 Msa1423210:CDS
AGAGATAGAGAGGTGCATGA+AGG 0.480339 tig0025516:+21562 Msa1423210:three_prime_UTR
TTTAATTTCTTGAGAGCAGA+TGG 0.488647 tig0025516:+21192 Msa1423210:three_prime_UTR
TGCCTCTTCAGCTTCTGCTA+TGG 0.491455 tig0025516:-20319 None:intergenic
CCTCCCTTCCAATAATAACA+TGG 0.495257 tig0025516:-20151 None:intergenic
AGTCTAAGGGAGCAATCAAA+AGG 0.496855 tig0025516:+16767 Msa1423210:CDS
TTCCTCTGTCTGAATATGCA+GGG 0.497922 tig0025516:-20119 None:intergenic
ACAACAACAAGCATATTTCA+AGG 0.500200 tig0025516:-21141 None:intergenic
AATCTATCTCAGACTTTGTA+GGG 0.500580 tig0025516:-20215 None:intergenic
AAATCTCTATGAAATTGGAC+AGG 0.500872 tig0025516:+20178 Msa1423210:CDS
AAGCTGGAGTTGCCAAGCAT+GGG 0.503893 tig0025516:+16486 Msa1423210:CDS
TGCTCCCTTAGACTTCTCCC+TGG 0.506852 tig0025516:-16758 None:intergenic
ATGCCGCACATTCCTGGTCC+TGG 0.511744 tig0025516:+16904 Msa1423210:CDS
GATAGATTTAGAAATAGAAA+AGG 0.512772 tig0025516:+20230 Msa1423210:CDS
TCGCTCAAATGTCGATCTCA+AGG 0.519219 tig0025516:+16565 Msa1423210:CDS
AGGAGCGTGGTCCATGGTGT+TGG 0.522087 tig0025516:+21027 Msa1423210:three_prime_UTR
ATATCTAGCTTGAATGAGCT+TGG 0.522209 tig0025516:+17843 Msa1423210:CDS
AATCAAAAGGGTGAATCATC+CGG 0.527127 tig0025516:+16780 Msa1423210:CDS
ATCAACAATTTCATCATCAT+CGG 0.527962 tig0025516:-16854 None:intergenic
AGCTGAAGAGGCAGCAAAGG+AGG 0.528236 tig0025516:+20329 Msa1423210:CDS
AAAATGGCGTACAATAATCA+AGG 0.529843 tig0025516:+16514 Msa1423210:CDS
ATGGAGAAATTTGAGTGTGA+CGG 0.530825 tig0025516:+16720 Msa1423210:CDS
ATCTAGCGGAAAACTGATCA+AGG 0.531425 tig0025516:+19143 Msa1423210:CDS
AAAGCTGGAGTTGCCAAGCA+TGG 0.532704 tig0025516:+16485 Msa1423210:CDS
TGCAGGCCTAGCCTTTATCA+GGG 0.534817 tig0025516:+21098 Msa1423210:three_prime_UTR
AGAAGCTGAAGAGGCAGCAA+AGG 0.535223 tig0025516:+20326 Msa1423210:CDS
CCACCCATGTTATTATTGGA+AGG 0.535733 tig0025516:+20147 Msa1423210:CDS
CGAAAAGTAGAAGTAAATGT+TGG 0.536851 tig0025516:-16258 None:intergenic
GATCTGAGCGAAGCTGCAGC+CGG 0.541138 tig0025516:+16198 Msa1423210:five_prime_UTR
ATTTCTTCGTCACTCTAGAT+GGG 0.541355 tig0025516:+16419 Msa1423210:exon
TCTTGAGACTTGAAGAGGCT+GGG 0.541739 tig0025516:-16878 None:intergenic
CTTCACACTTCAATCAAGAC+GGG 0.544296 tig0025516:-20993 None:intergenic
CTGTCTGAATATGCAGGGGT+AGG 0.544633 tig0025516:-20114 None:intergenic
GGCAGCCTCTTGAGCAGACA+TGG 0.544900 tig0025516:-20259 None:intergenic
CGGAAAATGCGGCGAAATCG+CGG 0.546257 tig0025516:-16289 None:intergenic
GGAGCGTGGTCCATGGTGTT+GGG 0.547522 tig0025516:+21028 Msa1423210:three_prime_UTR
AGAGGCAGCAAAGGAGGCAG+AGG 0.547850 tig0025516:+20335 Msa1423210:CDS
CCGGTGTTCGTTCTCGTCGT+CGG 0.547948 tig0025516:+16217 Msa1423210:five_prime_UTR
CTCTTCAGCTTCTGCTATGG+CGG 0.551526 tig0025516:-20316 None:intergenic
GACTGCTCGAGCAGCATATG+CGG 0.551764 tig0025516:-20280 None:intergenic
AAGGTCCATGTCTGCTCAAG+AGG 0.553221 tig0025516:+20254 Msa1423210:CDS
ATTTAGAAATAGAAAAGGTA+AGG 0.556910 tig0025516:+20235 Msa1423210:CDS
TGGAGTTGCCAAGCATGGGG+TGG 0.557397 tig0025516:+16490 Msa1423210:CDS
CACCCATGTTATTATTGGAA+GGG 0.560560 tig0025516:+20148 Msa1423210:CDS
GGAGTTGCCAAGCATGGGGT+GGG 0.561098 tig0025516:+16491 Msa1423210:CDS
AAATGCGGCGAAATCGCGGC+GGG 0.561764 tig0025516:-16285 None:intergenic
CAACAGAAAATTGTGGAATG+AGG 0.563399 tig0025516:-21606 None:intergenic
CTAAAGTATCTTACATCTAG+CGG 0.565433 tig0025516:+19129 Msa1423210:CDS
CTAGCGTGAATCCTAATCCA+TGG 0.566396 tig0025516:-21468 None:intergenic
TTGGGTAGGACAGAGGCAGC+CGG 0.569526 tig0025516:+21046 Msa1423210:three_prime_UTR
TCTAGCTTGAATGAGCTTGG+TGG 0.575119 tig0025516:+17846 Msa1423210:CDS
CGTGGTCCATGGTGTTGGGT+AGG 0.575869 tig0025516:+21032 Msa1423210:three_prime_UTR
CCTTCCAATAATAACATGGG+TGG 0.576377 tig0025516:-20147 None:intergenic
AGATCAGTGTGACTCGAACC+AGG 0.576831 tig0025516:-16180 None:intergenic
GTAGGACCAATACCGGCCAC+CGG 0.579738 tig0025516:+19077 Msa1423210:intron
AACACTTACGCCGGAAAATG+CGG 0.581014 tig0025516:-16300 None:intergenic
TCTTCACACTTCAATCAAGA+CGG 0.581316 tig0025516:-20994 None:intergenic
GTCTAAGGGAGCAATCAAAA+GGG 0.586208 tig0025516:+16768 Msa1423210:CDS
ATAATCCCCTGATAAAGGCT+AGG 0.587137 tig0025516:-21104 None:intergenic
TCCTCTGTCTGAATATGCAG+GGG 0.589128 tig0025516:-20118 None:intergenic
GCAGGCCTAGCCTTTATCAG+GGG 0.591285 tig0025516:+21099 Msa1423210:three_prime_UTR
AGCTCCAGGGAGAAGTCTAA+GGG 0.592466 tig0025516:+16754 Msa1423210:CDS
AGCTGCAATGAAAACACTGA+AGG 0.594087 tig0025516:+20398 Msa1423210:CDS
CCATGTTATTATTGGAAGGG+AGG 0.596204 tig0025516:+20151 Msa1423210:CDS
ATGTCTCTTGAGACTTGAAG+AGG 0.598346 tig0025516:-16883 None:intergenic
CTCCCTTCCAATAATAACAT+GGG 0.599995 tig0025516:-20150 None:intergenic
ATCATCGGATGGACCAGTAA+CGG 0.608006 tig0025516:-16839 None:intergenic
GAAATATCAACAGAAAATTG+TGG 0.611134 tig0025516:-21613 None:intergenic
TTATATTTCAGGTGAAACGC+AGG 0.613161 tig0025516:+20079 Msa1423210:intron
ACAATTTCATCATCATCGGA+TGG 0.613826 tig0025516:-16850 None:intergenic
GCTGCAATGAAAACACTGAA+GGG 0.616290 tig0025516:+20399 Msa1423210:CDS
CTTCCAATAATAACATGGGT+GGG 0.618304 tig0025516:-20146 None:intergenic
GCAGAAATGGACATCAGAAG+AGG 0.618364 tig0025516:+16451 Msa1423210:CDS
GGACCAGGACCAGGAATGTG+CGG 0.620041 tig0025516:-16907 None:intergenic
AACACTGTCTTGATCAAAGG+GGG 0.625133 tig0025516:+21435 Msa1423210:three_prime_UTR
CTGCAATGAAAACACTGAAG+GGG 0.632379 tig0025516:+20400 Msa1423210:CDS
AGCTGGAGTTGCCAAGCATG+GGG 0.639684 tig0025516:+16487 Msa1423210:CDS
GCCAAGACTTACCGTCTCTG+AGG 0.642080 tig0025516:-20430 None:intergenic
CATGGTGTTGGGTAGGACAG+AGG 0.643624 tig0025516:+21039 Msa1423210:three_prime_UTR
GGGGAGAAACACCTCAGAGA+CGG 0.644348 tig0025516:+20419 Msa1423210:CDS
ATAAATGTAAACATGCACTA+CGG 0.644507 tig0025516:-21689 None:intergenic
GGGAAATGGATCGAGCTCCA+GGG 0.651429 tig0025516:+16741 Msa1423210:CDS
ATGTTATAGAAACTGTGAGA+TGG 0.655934 tig0025516:+21529 Msa1423210:three_prime_UTR
CCGACGACGAGAACGAACAC+CGG 0.656073 tig0025516:-16217 None:intergenic
GACATGAGGAGCGTGGTCCA+TGG 0.658418 tig0025516:+21021 Msa1423210:three_prime_UTR
AATCTCTATGAAATTGGACA+GGG 0.658728 tig0025516:+20179 Msa1423210:CDS
ACCCCTGCATATTCAGACAG+AGG 0.679893 tig0025516:+20117 Msa1423210:CDS
CTCTGTCCTACCCAACACCA+TGG 0.699103 tig0025516:-21038 None:intergenic
AAAATGCGGCGAAATCGCGG+CGG 0.717379 tig0025516:-16286 None:intergenic
AAACACTGTCTTGATCAAAG+GGG 0.725354 tig0025516:+21434 Msa1423210:three_prime_UTR
AGAATGAGACATGAGGAGCG+TGG 0.752455 tig0025516:+21014 Msa1423210:three_prime_UTR
AGTGTGAAGAATGAGACATG+AGG 0.816723 tig0025516:+21007 Msa1423210:three_prime_UTR
AAATTGTGGAATGAGGTGTG+CGG 0.819385 tig0025516:-21599 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAACCAAAAAAAATAT+GGG - tig0025516:16957-16976 None:intergenic 10.0%
!! ATATTTAACCAAAAAAAATA+TGG - tig0025516:16958-16977 None:intergenic 10.0%
!!! ATATTTTTTTTGGTTAAATA+TGG + tig0025516:16957-16976 Msa1423210:intron 10.0%
!! ATTACAATTTATATAACAAA+TGG - tig0025516:17606-17625 None:intergenic 10.0%
!!! TACATTATACAAATTTTTTA+TGG + tig0025516:17666-17685 Msa1423210:intron 10.0%
!! TTTACATATGATATTTATTT+AGG + tig0025516:20737-20756 Msa1423210:intron 10.0%
!! AAAGTATATTGAATTAATGT+TGG + tig0025516:16647-16666 Msa1423210:intron 15.0%
!! AAATTTGTATAATGTAAACA+TGG - tig0025516:17662-17681 None:intergenic 15.0%
!! ATGAAGAAATTACATTATAT+TGG + tig0025516:18894-18913 Msa1423210:intron 15.0%
!! CAAATATATATATTCTACAA+GGG - tig0025516:19788-19807 None:intergenic 15.0%
!! ACAAATATATATATTCTACA+AGG - tig0025516:19789-19808 None:intergenic 15.0%
!! AAAGATTAATGTTATTATGT+TGG - tig0025516:19821-19840 None:intergenic 15.0%
!! TGTTATAGTATTACAATAAA+AGG - tig0025516:20460-20479 None:intergenic 15.0%
!!! ATTACAATTCAAATCATTTT+AGG - tig0025516:20843-20862 None:intergenic 15.0%
!! TATTTAATTGCATCTAATAG+CGG + tig0025516:16984-17003 Msa1423210:intron 20.0%
!!! AAATTCCATTCAATTTTCAA+TGG + tig0025516:17110-17129 Msa1423210:intron 20.0%
!! AAATCAAGATAATGAAATCA+GGG - tig0025516:17516-17535 None:intergenic 20.0%
!! ACAATTTATATAACAAATGG+AGG - tig0025516:17603-17622 None:intergenic 20.0%
!! AATTCATTTAATTCAGTAGT+TGG + tig0025516:17948-17967 Msa1423210:intron 20.0%
!!! TTTTAACAACTACAATCATT+AGG - tig0025516:17990-18009 None:intergenic 20.0%
!! GAATTAAACAAATAACATCA+TGG - tig0025516:18099-18118 None:intergenic 20.0%
!!! ATTTTCTTCTATACAATTCT+AGG - tig0025516:18550-18569 None:intergenic 20.0%
!! TAGAAGAAAATGTAAGAAAT+AGG + tig0025516:18559-18578 Msa1423210:intron 20.0%
!!! ATATATCACATTTTACCAAA+GGG - tig0025516:18836-18855 None:intergenic 20.0%
!!! TTTTTTCATGAACCATAAAA+CGG - tig0025516:19378-19397 None:intergenic 20.0%
!! GATAGATTTAGAAATAGAAA+AGG + tig0025516:20230-20249 Msa1423210:CDS 20.0%
!! ATTTAGAAATAGAAAAGGTA+AGG + tig0025516:20235-20254 Msa1423210:CDS 20.0%
!! ATCTACATATGATACTTATT+TGG + tig0025516:20557-20576 Msa1423210:intron 20.0%
!! TCTACATATGATACTTATTT+GGG + tig0025516:20558-20577 Msa1423210:intron 20.0%
!!! TTATATTTTCATAAAGCACT+TGG + tig0025516:20700-20719 Msa1423210:intron 20.0%
!!! TTTGAATTGTAATTTTGTTG+TGG + tig0025516:20850-20869 Msa1423210:intron 20.0%
!!! TTAAAGGCTTTTTATTTGAA+AGG - tig0025516:21276-21295 None:intergenic 20.0%
!! AGTCAAATTGATAAATGAAA+AGG - tig0025516:21349-21368 None:intergenic 20.0%
!! TGAATTCATTATTACTTCTT+TGG + tig0025516:21393-21412 Msa1423210:three_prime_UTR 20.0%
!!! CAACATTTACTTCTACTTTT+CGG + tig0025516:16259-16278 Msa1423210:five_prime_UTR 25.0%
! TTCAAAGAATCATAACACAT+TGG - tig0025516:16327-16346 None:intergenic 25.0%
!! GAAACCTGTGATTATAATTT+TGG + tig0025516:16344-16363 Msa1423210:intron 25.0%
! AACTCCAAAATTATAATCAC+AGG - tig0025516:16351-16370 None:intergenic 25.0%
! ATCAACAATTTCATCATCAT+CGG - tig0025516:16857-16876 None:intergenic 25.0%
!! AACTTAACAATAGACCTTTT+TGG - tig0025516:16931-16950 None:intergenic 25.0%
! AAAAGGTCTATTGTTAAGTT+TGG + tig0025516:16931-16950 Msa1423210:intron 25.0%
!! ATTTTGTATTAAACCGTGAA+TGG - tig0025516:17045-17064 None:intergenic 25.0%
! CAATTCCATTGAAAATTGAA+TGG - tig0025516:17118-17137 None:intergenic 25.0%
!! CATTCAATTTTCAATGGAAT+TGG + tig0025516:17116-17135 Msa1423210:intron 25.0%
! GAAGATAATTGAGATATTTG+AGG + tig0025516:17171-17190 Msa1423210:intron 25.0%
! ATCTACTTTAATAGTGCTAT+CGG + tig0025516:17422-17441 Msa1423210:intron 25.0%
! AATCAAGATAATGAAATCAG+GGG - tig0025516:17515-17534 None:intergenic 25.0%
! CAAATCAAGATAATGAAATC+AGG - tig0025516:17517-17536 None:intergenic 25.0%
! AATAGTGTGTGTTGAAATTT+GGG + tig0025516:17698-17717 Msa1423210:intron 25.0%
! AAATCTGTACAATGTAAACA+TGG - tig0025516:17749-17768 None:intergenic 25.0%
! TAATCTGTATAATGCAAACA+TGG - tig0025516:17802-17821 None:intergenic 25.0%
! CAGATTAGATAACCTTATAT+TGG + tig0025516:17815-17834 Msa1423210:intron 25.0%
! TAGATATAGCTTCCAATATA+AGG - tig0025516:17830-17849 None:intergenic 25.0%
! AAAGCAAAACAAATAAAAGC+TGG - tig0025516:17927-17946 None:intergenic 25.0%
!!! AGATATTCTAAAACACTGTA+TGG - tig0025516:18047-18066 None:intergenic 25.0%
! TAAAAATCTCATGTCCATAT+TGG + tig0025516:18067-18086 Msa1423210:intron 25.0%
!!! TTGCTTTGATTTTTCTAAGT+CGG + tig0025516:18657-18676 Msa1423210:intron 25.0%
!! CATATATCACATTTTACCAA+AGG - tig0025516:18837-18856 None:intergenic 25.0%
! CTTTGGTAAAATGTGATATA+TGG + tig0025516:18835-18854 Msa1423210:intron 25.0%
!! TTCATCACTTTGTATTTTGT+AGG + tig0025516:19059-19078 Msa1423210:intron 25.0%
! TATTGTATGTATGCATTAGA+TGG - tig0025516:19204-19223 None:intergenic 25.0%
! AACTAGGTACACAAATAATA+TGG - tig0025516:19599-19618 None:intergenic 25.0%
! AGACATTAGAAGTTATGTTT+AGG - tig0025516:19696-19715 None:intergenic 25.0%
! AAACATAACTTCTAATGTCT+AGG + tig0025516:19696-19715 Msa1423210:intron 25.0%
!! TTTTACAACTCTACATTTTC+TGG + tig0025516:19894-19913 Msa1423210:intron 25.0%
! ATGAGAATAGCATCAAAATA+TGG - tig0025516:20004-20023 None:intergenic 25.0%
!! TTTGATGCTATTCTCATTTT+TGG + tig0025516:20007-20026 Msa1423210:intron 25.0%
! CTATAACATGATACATCAAT+AGG + tig0025516:20472-20491 Msa1423210:intron 25.0%
! AACTTAGAAGAAAAATCACA+TGG + tig0025516:20520-20539 Msa1423210:intron 25.0%
!! TTTCAAATGTGATTTTGTTG+CGG + tig0025516:20671-20690 Msa1423210:intron 25.0%
!!! AATTGTAATTTTGTTGTGGA+GGG + tig0025516:20854-20873 Msa1423210:intron 25.0%
! ATACCATCTTAGTGATTATT+TGG + tig0025516:20900-20919 Msa1423210:intron 25.0%
! ATACCAAATAATCACTAAGA+TGG - tig0025516:20906-20925 None:intergenic 25.0%
!! GTATTTCTATCAAATAGATG+TGG + tig0025516:20922-20941 Msa1423210:intron 25.0%
!!! ATATGCTTGTTGTTGTTTAT+AGG + tig0025516:21148-21167 Msa1423210:three_prime_UTR 25.0%
!!! AAAGCTTTGTTTGAACTTAA+AGG - tig0025516:21292-21311 None:intergenic 25.0%
! GAAATATCAACAGAAAATTG+TGG - tig0025516:21616-21635 None:intergenic 25.0%
AAATCAAAACCCTAAAAACC+TGG + tig0025516:16162-16181 Msa1423210:five_prime_UTR 30.0%
CGAAAAGTAGAAGTAAATGT+TGG - tig0025516:16261-16280 None:intergenic 30.0%
AAAATGGCGTACAATAATCA+AGG + tig0025516:16514-16533 Msa1423210:CDS 30.0%
AACAAGACACGATTAAATTC+AGG - tig0025516:16542-16561 None:intergenic 30.0%
ACCATTAGATCCACATTTAA+CGG - tig0025516:16674-16693 None:intergenic 30.0%
TAAATGTGGATCTAATGGTT+TGG + tig0025516:16675-16694 Msa1423210:intron 30.0%
!!! AGTTTGGCCCATATTTTTTT+TGG + tig0025516:16947-16966 Msa1423210:intron 30.0%
!!! ACTGTTGTTTTTACCATTCA+CGG + tig0025516:17029-17048 Msa1423210:intron 30.0%
! ATTTTCAATGGAATTGGATC+CGG + tig0025516:17122-17141 Msa1423210:intron 30.0%
TCAATTATCTTCCACTTTCA+GGG - tig0025516:17163-17182 None:intergenic 30.0%
!!! CAGTTTTTTGCTAAAAGATG+AGG + tig0025516:17261-17280 Msa1423210:intron 30.0%
AAAATTTCGCTTTGCTACAA+TGG - tig0025516:17322-17341 None:intergenic 30.0%
CAAATTTCAACACACACTAT+TGG - tig0025516:17699-17718 None:intergenic 30.0%
CAATAGTGTGTGTTGAAATT+TGG + tig0025516:17697-17716 Msa1423210:intron 30.0%
ATAGTGTGTGTTGAAATTTG+GGG + tig0025516:17699-17718 Msa1423210:intron 30.0%
AACTATTGCTTCTTTCATAG+AGG + tig0025516:17881-17900 Msa1423210:CDS 30.0%
!! GAGTTGATATTAGTACAAAG+AGG + tig0025516:18126-18145 Msa1423210:intron 30.0%
! ACTGGTTAGTATTTTGTATG+AGG + tig0025516:18319-18338 Msa1423210:intron 30.0%
! CTGGTTAGTATTTTGTATGA+GGG + tig0025516:18320-18339 Msa1423210:intron 30.0%
!! CAATTCTAGGACTATAAACA+AGG - tig0025516:18537-18556 None:intergenic 30.0%
!! TGCTTTGATTTTTCTAAGTC+GGG + tig0025516:18658-18677 Msa1423210:intron 30.0%
GAGTGTTATAGCATTACATT+TGG + tig0025516:18935-18954 Msa1423210:intron 30.0%
GTTATAGCATTACATTTGGT+TGG + tig0025516:18939-18958 Msa1423210:intron 30.0%
! CTAAAGTATCTTACATCTAG+CGG + tig0025516:19129-19148 Msa1423210:CDS 30.0%
GGTGTAATAGAAAAAACTCA+AGG + tig0025516:19648-19667 Msa1423210:intron 30.0%
AAAAAACTCAAGGCTCATAT+TGG + tig0025516:19658-19677 Msa1423210:intron 30.0%
TCAATTAGAGATCTTACTCA+TGG + tig0025516:20048-20067 Msa1423210:intron 30.0%
CAATTAGAGATCTTACTCAT+GGG + tig0025516:20049-20068 Msa1423210:intron 30.0%
!! TGGGTTGAGTTTTATATTTC+AGG + tig0025516:20068-20087 Msa1423210:intron 30.0%
GCAGAAAATCTCTATGAAAT+TGG + tig0025516:20173-20192 Msa1423210:CDS 30.0%
AAATCTCTATGAAATTGGAC+AGG + tig0025516:20178-20197 Msa1423210:CDS 30.0%
AATCTCTATGAAATTGGACA+GGG + tig0025516:20179-20198 Msa1423210:CDS 30.0%
AATCTATCTCAGACTTTGTA+GGG - tig0025516:20218-20237 None:intergenic 30.0%
AAATCTATCTCAGACTTTGT+AGG - tig0025516:20219-20238 None:intergenic 30.0%
!! GAATTGTAATTTTGTTGTGG+AGG + tig0025516:20853-20872 Msa1423210:intron 30.0%
ACAACAACAAGCATATTTCA+AGG - tig0025516:21144-21163 None:intergenic 30.0%
! TTTAATTTCTTGAGAGCAGA+TGG + tig0025516:21192-21211 Msa1423210:three_prime_UTR 30.0%
! GTTCAAACAAAGCTTTAGTT+TGG + tig0025516:21296-21315 Msa1423210:three_prime_UTR 30.0%
! TTTGGATCTTTTCATGTTGT+TGG + tig0025516:21314-21333 Msa1423210:three_prime_UTR 30.0%
AAAAACACTGTCTTGATCAA+AGG + tig0025516:21432-21451 Msa1423210:three_prime_UTR 30.0%
AAAACACTGTCTTGATCAAA+GGG + tig0025516:21433-21452 Msa1423210:three_prime_UTR 30.0%
ATGTTATAGAAACTGTGAGA+TGG + tig0025516:21529-21548 Msa1423210:three_prime_UTR 30.0%
AATTTCTTCGTCACTCTAGA+TGG + tig0025516:16418-16437 Msa1423210:exon 35.0%
ATTTCTTCGTCACTCTAGAT+GGG + tig0025516:16419-16438 Msa1423210:exon 35.0%
TAATGTTGGACCGTTAAATG+TGG + tig0025516:16661-16680 Msa1423210:intron 35.0%
ACCGTTAAATGTGGATCTAA+TGG + tig0025516:16670-16689 Msa1423210:intron 35.0%
!! GATCTAATGGTTTGGTTATG+TGG + tig0025516:16683-16702 Msa1423210:intron 35.0%
!! AATGGTTTGGTTATGTGGTT+TGG + tig0025516:16688-16707 Msa1423210:intron 35.0%
! TTTGGTTATGTGGTTTGGAT+AGG + tig0025516:16693-16712 Msa1423210:intron 35.0%
! TGTGGTTTGGATAGGATAAA+TGG + tig0025516:16701-16720 Msa1423210:intron 35.0%
ATGGAGAAATTTGAGTGTGA+CGG + tig0025516:16720-16739 Msa1423210:CDS 35.0%
AATCAAAAGGGTGAATCATC+CGG + tig0025516:16780-16799 Msa1423210:CDS 35.0%
ATAGAGTTGTCATCCTGTTT+CGG - tig0025516:16808-16827 None:intergenic 35.0%
ACAATTTCATCATCATCGGA+TGG - tig0025516:16853-16872 None:intergenic 35.0%
! AGGGATAATTTGCAAAACTC+CGG - tig0025516:17144-17163 None:intergenic 35.0%
TTGCAAATTATCCCTGAAAG+TGG + tig0025516:17149-17168 Msa1423210:intron 35.0%
CTCAATTATCTTCCACTTTC+AGG - tig0025516:17164-17183 None:intergenic 35.0%
AGCAAAAAACTGTTCCATGA+TGG - tig0025516:17253-17272 None:intergenic 35.0%
GATGTTCTATTCTGCAAACA+AGG - tig0025516:17405-17424 None:intergenic 35.0%
TCGGCTATTGTCTTTCAATT+AGG + tig0025516:17441-17460 Msa1423210:intron 35.0%
CGGCTATTGTCTTTCAATTA+GGG + tig0025516:17442-17461 Msa1423210:intron 35.0%
GGCTATTGTCTTTCAATTAG+GGG + tig0025516:17443-17462 Msa1423210:intron 35.0%
! GATTTGCTTGCATTCTATAG+AGG + tig0025516:17531-17550 Msa1423210:intron 35.0%
AACATGGTTAAGCATACTGT+TGG - tig0025516:17733-17752 None:intergenic 35.0%
! ATATCTAGCTTGAATGAGCT+TGG + tig0025516:17843-17862 Msa1423210:CDS 35.0%
CATCATGGAATATGCCAATA+TGG - tig0025516:18084-18103 None:intergenic 35.0%
TCATTCGATGAAATCCATGT+GGG + tig0025516:18185-18204 Msa1423210:intron 35.0%
GAAATGGGTCTTACATAAAG+TGG - tig0025516:18216-18235 None:intergenic 35.0%
TAAGACCCATTTCCAAAATG+TGG + tig0025516:18223-18242 Msa1423210:intron 35.0%
AAGACCCATTTCCAAAATGT+GGG + tig0025516:18224-18243 Msa1423210:intron 35.0%
TCTCTCTTATTAGGTGAAAC+CGG - tig0025516:18257-18276 None:intergenic 35.0%
TTCCAACACTCTCTCTTATT+AGG - tig0025516:18266-18285 None:intergenic 35.0%
CTAACCAGTATTTGTACTAG+AGG - tig0025516:18308-18327 None:intergenic 35.0%
! TCTAGGACTATAAACAAGGA+TGG - tig0025516:18533-18552 None:intergenic 35.0%
!! GCTTTGATTTTTCTAAGTCG+GGG + tig0025516:18659-18678 Msa1423210:intron 35.0%
! AAAATAGCTCTGCTTCATGA+TGG - tig0025516:18685-18704 None:intergenic 35.0%
!! GCAGAGCTATTTTCATAATG+AGG + tig0025516:18692-18711 Msa1423210:intron 35.0%
GAGTGTTATAGCATCACATT+TGG + tig0025516:18972-18991 Msa1423210:intron 35.0%
GTTATAGCATCACATTTGGT+TGG + tig0025516:18976-18995 Msa1423210:intron 35.0%
! GTATTTTGTAGGACCAATAC+CGG + tig0025516:19070-19089 Msa1423210:intron 35.0%
!!! AACAACTTTTTGAAGTCTGC+CGG - tig0025516:19099-19118 None:intergenic 35.0%
GGATATCCCATTTATAGTAG+AGG + tig0025516:19299-19318 Msa1423210:intron 35.0%
!! TCATTTACTCTAAGACGTAG+TGG + tig0025516:19409-19428 Msa1423210:intron 35.0%
!! AAGACGTAGTGGATTAGTAT+TGG + tig0025516:19420-19439 Msa1423210:intron 35.0%
!! AGACGTAGTGGATTAGTATT+GGG + tig0025516:19421-19440 Msa1423210:intron 35.0%
GGGAAAAATCAAAGTCTCTT+CGG + tig0025516:19441-19460 Msa1423210:intron 35.0%
AGTCTCTTCGGATAGAAATA+AGG + tig0025516:19453-19472 Msa1423210:intron 35.0%
CTTCATCAAACCAACTTCTA+CGG - tig0025516:19514-19533 None:intergenic 35.0%
TGGTTTGATGAAGTTGAATC+AGG + tig0025516:19521-19540 Msa1423210:intron 35.0%
ATCAGGACCAAAAAGACAAA+AGG + tig0025516:19538-19557 Msa1423210:intron 35.0%
TCAGGACCAAAAAGACAAAA+GGG + tig0025516:19539-19558 Msa1423210:intron 35.0%
! CTAATGCCCTTTTGTCTTTT+TGG - tig0025516:19548-19567 None:intergenic 35.0%
TCTATCCTAGACACATGAAT+GGG + tig0025516:19570-19589 Msa1423210:intron 35.0%
!! GCTCATATTGGTGTTAGATA+AGG + tig0025516:19670-19689 Msa1423210:intron 35.0%
TGTCTACTTTGTAAGGTTTG+AGG - tig0025516:19763-19782 None:intergenic 35.0%
AAGGGTTTGTCTACTTTGTA+AGG - tig0025516:19770-19789 None:intergenic 35.0%
ATCTTTACCATGTACTGCTT+AGG + tig0025516:19835-19854 Msa1423210:intron 35.0%
! TTATATTTCAGGTGAAACGC+AGG + tig0025516:20079-20098 Msa1423210:intron 35.0%
CTTCCAATAATAACATGGGT+GGG - tig0025516:20149-20168 None:intergenic 35.0%
CACCCATGTTATTATTGGAA+GGG + tig0025516:20148-20167 Msa1423210:CDS 35.0%
CTCCCTTCCAATAATAACAT+GGG - tig0025516:20153-20172 None:intergenic 35.0%
! AAATGTGATTTTGTTGCGGA+GGG + tig0025516:20675-20694 Msa1423210:intron 35.0%
AAGATGGTATAGAATGTCTC+CGG - tig0025516:20890-20909 None:intergenic 35.0%
TCTTCACACTTCAATCAAGA+CGG - tig0025516:20997-21016 None:intergenic 35.0%
TTGCAATAATCCCCTGATAA+AGG - tig0025516:21112-21131 None:intergenic 35.0%
AAACACTGTCTTGATCAAAG+GGG + tig0025516:21434-21453 Msa1423210:three_prime_UTR 35.0%
CAACAGAAAATTGTGGAATG+AGG - tig0025516:21609-21628 None:intergenic 35.0%
TCAAGTATAAGCCTCTTAGA+AGG + tig0025516:21634-21653 Msa1423210:three_prime_UTR 35.0%
ACTACACAATTCCTTCTAAG+AGG - tig0025516:21648-21667 None:intergenic 35.0%
! TGACTCGAACCAGGTTTTTA+GGG - tig0025516:16174-16193 None:intergenic 40.0%
TCTGATGTCCATTTCTGCTT+AGG - tig0025516:16449-16468 None:intergenic 40.0%
TGGAGAAATTTGAGTGTGAC+GGG + tig0025516:16721-16740 Msa1423210:CDS 40.0%
! AATTTGAGTGTGACGGGAAA+TGG + tig0025516:16727-16746 Msa1423210:CDS 40.0%
AGTCTAAGGGAGCAATCAAA+AGG + tig0025516:16767-16786 Msa1423210:CDS 40.0%
GTCTAAGGGAGCAATCAAAA+GGG + tig0025516:16768-16787 Msa1423210:CDS 40.0%
GAAACAGGATGACAACTCTA+TGG + tig0025516:16807-16826 Msa1423210:CDS 40.0%
ATGTCTCTTGAGACTTGAAG+AGG - tig0025516:16886-16905 None:intergenic 40.0%
! ACAATAGACCTTTTTGGACC+AGG - tig0025516:16925-16944 None:intergenic 40.0%
ATTGCATCTAATAGCGGTAG+AGG + tig0025516:16990-17009 Msa1423210:intron 40.0%
TTGCATCTAATAGCGGTAGA+GGG + tig0025516:16991-17010 Msa1423210:intron 40.0%
GGACTTTCACTTTACCATCA+TGG + tig0025516:17236-17255 Msa1423210:intron 40.0%
TTGCTACAATGGTAAACTGC+TGG - tig0025516:17311-17330 None:intergenic 40.0%
CTCATTCGATGAAATCCATG+TGG + tig0025516:18184-18203 Msa1423210:intron 40.0%
!! GGATCCCACATTTTGGAAAT+GGG - tig0025516:18231-18250 None:intergenic 40.0%
!! TGGATCCCACATTTTGGAAA+TGG - tig0025516:18232-18251 None:intergenic 40.0%
! CACCTAATAAGAGAGAGTGT+TGG + tig0025516:18261-18280 Msa1423210:intron 40.0%
!! ATTTGTACTAGAGGAGTGCT+AGG - tig0025516:18299-18318 None:intergenic 40.0%
CACTCCTCTAGTACAAATAC+TGG + tig0025516:18301-18320 Msa1423210:intron 40.0%
TAAGGTGGCTACCAATGATA+TGG + tig0025516:18361-18380 Msa1423210:intron 40.0%
GTCTATGACCTCCATATCAT+TGG - tig0025516:18375-18394 None:intergenic 40.0%
CACATTAACCAGGTTTCAGA+AGG - tig0025516:18754-18773 None:intergenic 40.0%
AACCTGGTTAATGTGACTTG+TGG + tig0025516:18759-18778 Msa1423210:intron 40.0%
AACCACAAGTCACATTAACC+AGG - tig0025516:18764-18783 None:intergenic 40.0%
ATCTAGCGGAAAACTGATCA+AGG + tig0025516:19143-19162 Msa1423210:CDS 40.0%
! TTTTTGTCCAATCACCAGTG+TGG + tig0025516:19270-19289 Msa1423210:intron 40.0%
! TTTTGTCCAATCACCAGTGT+GGG + tig0025516:19271-19290 Msa1423210:intron 40.0%
GGTCAGCCTCTACTATAAAT+GGG - tig0025516:19308-19327 None:intergenic 40.0%
AGGTCAGCCTCTACTATAAA+TGG - tig0025516:19309-19328 None:intergenic 40.0%
TGTTTACATCCCCTATCCTT+TGG + tig0025516:19330-19349 Msa1423210:intron 40.0%
GTTTACATCCCCTATCCTTT+GGG + tig0025516:19331-19350 Msa1423210:intron 40.0%
!!! TTCTCTACAGTGCCGTTTTA+TGG + tig0025516:19363-19382 Msa1423210:intron 40.0%
GGATAGAAATAAGGCCTAAG+TGG + tig0025516:19462-19481 Msa1423210:intron 40.0%
GTCTATCCTAGACACATGAA+TGG + tig0025516:19569-19588 Msa1423210:intron 40.0%
TGTACCTAGTTCAGTAGTGT+TGG + tig0025516:19608-19627 Msa1423210:intron 40.0%
GTACCTAGTTCAGTAGTGTT+GGG + tig0025516:19609-19628 Msa1423210:intron 40.0%
!! CAACTCTACATTTTCTGGTG+TGG + tig0025516:19899-19918 Msa1423210:intron 40.0%
TTCCTCTGTCTGAATATGCA+GGG - tig0025516:20122-20141 None:intergenic 40.0%
ACACCCACCCATGTTATTAT+TGG + tig0025516:20143-20162 Msa1423210:CDS 40.0%
CCTTCCAATAATAACATGGG+TGG - tig0025516:20150-20169 None:intergenic 40.0%
CCACCCATGTTATTATTGGA+AGG + tig0025516:20147-20166 Msa1423210:CDS 40.0%
CCTCCCTTCCAATAATAACA+TGG - tig0025516:20154-20173 None:intergenic 40.0%
CCATGTTATTATTGGAAGGG+AGG + tig0025516:20151-20170 Msa1423210:CDS 40.0%
AGCTGCAATGAAAACACTGA+AGG + tig0025516:20398-20417 Msa1423210:CDS 40.0%
GCTGCAATGAAAACACTGAA+GGG + tig0025516:20399-20418 Msa1423210:CDS 40.0%
CTGCAATGAAAACACTGAAG+GGG + tig0025516:20400-20419 Msa1423210:CDS 40.0%
TTCCATATAACCTGCTTGTG+AGG + tig0025516:20606-20625 Msa1423210:intron 40.0%
TCCATATAACCTGCTTGTGA+GGG + tig0025516:20607-20626 Msa1423210:intron 40.0%
! CAAATGTGATTTTGTTGCGG+AGG + tig0025516:20674-20693 Msa1423210:intron 40.0%
TTCCATATAACCTGCTTGTG+AGG + tig0025516:20606-20625 Msa1423210:intron 40.0%
TCCATATAACCTGCTTGTGA+GGG + tig0025516:20607-20626 Msa1423210:intron 40.0%
TGTGGAGGGATTTATCATTC+CGG + tig0025516:20868-20887 Msa1423210:intron 40.0%
CTTCACACTTCAATCAAGAC+GGG - tig0025516:20996-21015 None:intergenic 40.0%
AGTGTGAAGAATGAGACATG+AGG + tig0025516:21007-21026 Msa1423210:three_prime_UTR 40.0%
ATAATCCCCTGATAAAGGCT+AGG - tig0025516:21107-21126 None:intergenic 40.0%
GAGCAGATGGTTAGATGAAT+TGG + tig0025516:21205-21224 Msa1423210:three_prime_UTR 40.0%
AACACTGTCTTGATCAAAGG+GGG + tig0025516:21435-21454 Msa1423210:three_prime_UTR 40.0%
GTTGTAGTGTTCCATGGATT+AGG + tig0025516:21457-21476 Msa1423210:three_prime_UTR 40.0%
GATTCACGCTAGTTACTGAT+TGG + tig0025516:21479-21498 Msa1423210:three_prime_UTR 40.0%
GTCACTCATTTATGAACTGC+TGG + tig0025516:21506-21525 Msa1423210:three_prime_UTR 40.0%
AAATTGTGGAATGAGGTGTG+CGG - tig0025516:21602-21621 None:intergenic 40.0%
! GTGACTCGAACCAGGTTTTT+AGG - tig0025516:16175-16194 None:intergenic 45.0%
AACACTTACGCCGGAAAATG+CGG - tig0025516:16303-16322 None:intergenic 45.0%
CACATTGGAAACACTTACGC+CGG - tig0025516:16312-16331 None:intergenic 45.0%
GCAGAAATGGACATCAGAAG+AGG + tig0025516:16451-16470 Msa1423210:CDS 45.0%
TCGCTCAAATGTCGATCTCA+AGG + tig0025516:16565-16584 Msa1423210:CDS 45.0%
TTGTCATCCTGTTTCGGTAC+CGG - tig0025516:16802-16821 None:intergenic 45.0%
ATCATCGGATGGACCAGTAA+CGG - tig0025516:16842-16861 None:intergenic 45.0%
TCTTGAGACTTGAAGAGGCT+GGG - tig0025516:16881-16900 None:intergenic 45.0%
CAATGTGACTACCATCGCTT+CGG + tig0025516:17197-17216 Msa1423210:intron 45.0%
AAAGTGAAAGTCCCACCTTG+TGG - tig0025516:17229-17248 None:intergenic 45.0%
GTGTGTGTTGAAATTTGGGG+CGG + tig0025516:17702-17721 Msa1423210:intron 45.0%
! TCTAGCTTGAATGAGCTTGG+TGG + tig0025516:17846-17865 Msa1423210:CDS 45.0%
ATAAAGTGGTGAGACCCACA+TGG - tig0025516:18202-18221 None:intergenic 45.0%
CTTATTAGGTGAAACCGGTG+TGG - tig0025516:18252-18271 None:intergenic 45.0%
! ATTTTGTATGAGGGAGAGCC+TGG + tig0025516:18329-18348 Msa1423210:intron 45.0%
! TTTTGTATGAGGGAGAGCCT+GGG + tig0025516:18330-18349 Msa1423210:intron 45.0%
ATTTATTACTCCAGCGCACG+AGG - tig0025516:18475-18494 None:intergenic 45.0%
TAACCAGGTTTCAGAAGGCA+TGG - tig0025516:18749-18768 None:intergenic 45.0%
! TGACTTGTGGTTTCTGTGAG+TGG + tig0025516:18772-18791 Msa1423210:intron 45.0%
AGGGACATTCGAAACAGCTA+AGG - tig0025516:18817-18836 None:intergenic 45.0%
! AGCTGTTTCGAATGTCCCTT+TGG + tig0025516:18818-18837 Msa1423210:intron 45.0%
!!! AACTTTTTGAAGTCTGCCGG+TGG - tig0025516:19096-19115 None:intergenic 45.0%
AGGATAGGGGATGTAAACAC+AGG - tig0025516:19329-19348 None:intergenic 45.0%
AGGCTTTACAAGCTCCACTT+AGG - tig0025516:19479-19498 None:intergenic 45.0%
TAAGTGGAGCTTGTAAAGCC+TGG + tig0025516:19478-19497 Msa1423210:intron 45.0%
AAGTGGAGCTTGTAAAGCCT+GGG + tig0025516:19479-19498 Msa1423210:intron 45.0%
TCAAACCAACTTCTACGGTG+AGG - tig0025516:19509-19528 None:intergenic 45.0%
ACACCCAACACTACTGAACT+AGG - tig0025516:19615-19634 None:intergenic 45.0%
AGCTGTACCTAAGCAGTACA+TGG - tig0025516:19845-19864 None:intergenic 45.0%
TTCAGGTGAAACGCAGGTAT+AGG + tig0025516:20085-20104 Msa1423210:intron 45.0%
TCCTCTGTCTGAATATGCAG+GGG - tig0025516:20121-20140 None:intergenic 45.0%
CTTCCTCTGTCTGAATATGC+AGG - tig0025516:20123-20142 None:intergenic 45.0%
CTAGCGTGAATCCTAATCCA+TGG - tig0025516:21471-21490 None:intergenic 45.0%
AGAGAGAGAGAGAGATAGAG+AGG + tig0025516:21552-21571 Msa1423210:three_prime_UTR 45.0%
! AGAGATAGAGAGGTGCATGA+AGG + tig0025516:21562-21581 Msa1423210:three_prime_UTR 45.0%
! GAGATAGAGAGGTGCATGAA+GGG + tig0025516:21563-21582 Msa1423210:three_prime_UTR 45.0%
!! AAAAACAAATAAAATAAAAA+TGG - tig0025516:20767-20786 None:intergenic 5.0%
AGATCAGTGTGACTCGAACC+AGG - tig0025516:16183-16202 None:intergenic 50.0%
TGGGTGCTCCTAAGCAGAAA+TGG + tig0025516:16438-16457 Msa1423210:CDS 50.0%
GAGGAAGCAGCTCTTAAAGC+TGG + tig0025516:16470-16489 Msa1423210:CDS 50.0%
AAAGCTGGAGTTGCCAAGCA+TGG + tig0025516:16485-16504 Msa1423210:CDS 50.0%
AAGCTGGAGTTGCCAAGCAT+GGG + tig0025516:16486-16505 Msa1423210:CDS 50.0%
AGCTCCAGGGAGAAGTCTAA+GGG + tig0025516:16754-16773 Msa1423210:CDS 50.0%
! GAATCATCCGGTACCGAAAC+AGG + tig0025516:16792-16811 Msa1423210:CDS 50.0%
ATGGCTATCACTGCCGTTAC+TGG + tig0025516:16826-16845 Msa1423210:CDS 50.0%
CTCTTGAGACTTGAAGAGGC+TGG - tig0025516:16882-16901 None:intergenic 50.0%
TTCCTGGTCCTGGTCCAAAA+AGG + tig0025516:16914-16933 Msa1423210:CDS 50.0%
CCAAAATGTGGGATCCACAC+CGG + tig0025516:18235-18254 Msa1423210:intron 50.0%
GGTGGCTACCAATGATATGG+AGG + tig0025516:18364-18383 Msa1423210:intron 50.0%
CAAGCAGAGAGGCTGTTACA+AGG - tig0025516:18404-18423 None:intergenic 50.0%
TGTAACAGCCTCTCTGCTTG+CGG + tig0025516:18404-18423 Msa1423210:intron 50.0%
!! ACTCCATGCCTTCTGAAACC+TGG + tig0025516:18743-18762 Msa1423210:intron 50.0%
! ATCCCCTATCCTTTGGGAGT+GGG + tig0025516:19337-19356 Msa1423210:intron 50.0%
AACCCACTCCCAAAGGATAG+GGG - tig0025516:19342-19361 None:intergenic 50.0%
GAACCCACTCCCAAAGGATA+GGG - tig0025516:19343-19362 None:intergenic 50.0%
AGAACCCACTCCCAAAGGAT+AGG - tig0025516:19344-19363 None:intergenic 50.0%
AGAGAAGAACCCACTCCCAA+AGG - tig0025516:19349-19368 None:intergenic 50.0%
GCAATCCTCACCGTAGAAGT+TGG + tig0025516:19501-19520 Msa1423210:intron 50.0%
GGTGACCCATTCATGTGTCT+AGG - tig0025516:19578-19597 None:intergenic 50.0%
! GTTCAGTAGTGTTGGGTGTG+AGG + tig0025516:19616-19635 Msa1423210:intron 50.0%
! CACCTTTCAAGCCGCTTTGT+CGG + tig0025516:19726-19745 Msa1423210:intron 50.0%
! ACCTTTCAAGCCGCTTTGTC+GGG + tig0025516:19727-19746 Msa1423210:intron 50.0%
CCAAACACAACCCGACAAAG+CGG - tig0025516:19740-19759 None:intergenic 50.0%
TACTGCTTAGGTACAGCTGC+TGG + tig0025516:19847-19866 Msa1423210:intron 50.0%
! TTAGGTACAGCTGCTGGTTG+TGG + tig0025516:19853-19872 Msa1423210:intron 50.0%
CTGTCTGAATATGCAGGGGT+AGG - tig0025516:20117-20136 None:intergenic 50.0%
ACCCCTGCATATTCAGACAG+AGG + tig0025516:20117-20136 Msa1423210:CDS 50.0%
AAGGTCCATGTCTGCTCAAG+AGG + tig0025516:20254-20273 Msa1423210:CDS 50.0%
CTCTTCAGCTTCTGCTATGG+CGG - tig0025516:20319-20338 None:intergenic 50.0%
TGCCTCTTCAGCTTCTGCTA+TGG - tig0025516:20322-20341 None:intergenic 50.0%
AGAAGCTGAAGAGGCAGCAA+AGG + tig0025516:20326-20345 Msa1423210:CDS 50.0%
ACCTCAGAGACGGTAAGTCT+TGG + tig0025516:20429-20448 Msa1423210:intron 50.0%
GCCCTCACAAGCAGGTTATA+TGG - tig0025516:20611-20630 None:intergenic 50.0%
! AACCTGCTTGTGAGGGCATA+AGG + tig0025516:20614-20633 Msa1423210:intron 50.0%
GCCCTCACAAGCAGGTTATA+TGG - tig0025516:20611-20630 None:intergenic 50.0%
TGCTTTATGCCCTCACAAGC+AGG - tig0025516:20798-20817 None:intergenic 50.0%
AGAATGAGACATGAGGAGCG+TGG + tig0025516:21014-21033 Msa1423210:three_prime_UTR 50.0%
! TTGCAGGCCTAGCCTTTATC+AGG + tig0025516:21097-21116 Msa1423210:three_prime_UTR 50.0%
! TGCAGGCCTAGCCTTTATCA+GGG + tig0025516:21098-21117 Msa1423210:three_prime_UTR 50.0%
AAGGGGGTTGTAGTGTTCCA+TGG + tig0025516:21451-21470 Msa1423210:three_prime_UTR 50.0%
AAAATGCGGCGAAATCGCGG+CGG - tig0025516:16289-16308 None:intergenic 55.0%
CGGAAAATGCGGCGAAATCG+CGG - tig0025516:16292-16311 None:intergenic 55.0%
! CGCGATTTCGCCGCATTTTC+CGG + tig0025516:16290-16309 Msa1423210:five_prime_UTR 55.0%
AGCTGGAGTTGCCAAGCATG+GGG + tig0025516:16487-16506 Msa1423210:CDS 55.0%
! CCATTTTCCCACCCCATGCT+TGG - tig0025516:16501-16520 None:intergenic 55.0%
CCAAGCATGGGGTGGGAAAA+TGG + tig0025516:16498-16517 Msa1423210:CDS 55.0%
GGGAAATGGATCGAGCTCCA+GGG + tig0025516:16741-16760 Msa1423210:CDS 55.0%
GAGCTCCAGGGAGAAGTCTA+AGG + tig0025516:16753-16772 Msa1423210:CDS 55.0%
TGCTCCCTTAGACTTCTCCC+TGG - tig0025516:16761-16780 None:intergenic 55.0%
AGAGACATGCCGCACATTCC+TGG + tig0025516:16898-16917 Msa1423210:CDS 55.0%
! GACCTTTTTGGACCAGGACC+AGG - tig0025516:16919-16938 None:intergenic 55.0%
AAAGTCCCACCTTGTGGCGT+TGG - tig0025516:17223-17242 None:intergenic 55.0%
! CCGGTGTGGATCCCACATTT+TGG - tig0025516:18238-18257 None:intergenic 55.0%
AGAGCCTGGGCACAACGTTA+AGG + tig0025516:18343-18362 Msa1423210:intron 55.0%
GTAACAGCCTCTCTGCTTGC+GGG + tig0025516:18405-18424 Msa1423210:intron 55.0%
AGGATCCCACGTGGGATCTA+GGG - tig0025516:18455-18474 None:intergenic 55.0%
!!! TTTTGAAGTCTGCCGGTGGC+CGG - tig0025516:19092-19111 None:intergenic 55.0%
CATGCACCCACACTGGTGAT+TGG - tig0025516:19280-19299 None:intergenic 55.0%
CAATCACCAGTGTGGGTGCA+TGG + tig0025516:19278-19297 Msa1423210:intron 55.0%
GGATATCCATGCACCCACAC+TGG - tig0025516:19287-19306 None:intergenic 55.0%
! CATCCCCTATCCTTTGGGAG+TGG + tig0025516:19336-19355 Msa1423210:intron 55.0%
TTCTACGGTGAGGATTGCCC+AGG - tig0025516:19499-19518 None:intergenic 55.0%
ACCCGACAAAGCGGCTTGAA+AGG - tig0025516:19731-19750 None:intergenic 55.0%
! CCGCTTTGTCGGGTTGTGTT+TGG + tig0025516:19737-19756 Msa1423210:intron 55.0%
! ACAGCTGCTGGTTGTGGCTT+TGG + tig0025516:19859-19878 Msa1423210:intron 55.0%
! CAGCTGCTGGTTGTGGCTTT+GGG + tig0025516:19860-19879 Msa1423210:intron 55.0%
GACTGCTCGAGCAGCATATG+CGG - tig0025516:20283-20302 None:intergenic 55.0%
CGCCATAGCAGAAGCTGAAG+AGG + tig0025516:20317-20336 Msa1423210:CDS 55.0%
AGCTGAAGAGGCAGCAAAGG+AGG + tig0025516:20329-20348 Msa1423210:CDS 55.0%
GGGGAGAAACACCTCAGAGA+CGG + tig0025516:20419-20438 Msa1423210:CDS 55.0%
GCCAAGACTTACCGTCTCTG+AGG - tig0025516:20433-20452 None:intergenic 55.0%
TGCCTTATGCCCTCACAAGC+AGG - tig0025516:20619-20638 None:intergenic 55.0%
CTCTGTCCTACCCAACACCA+TGG - tig0025516:21041-21060 None:intergenic 55.0%
! CATGGTGTTGGGTAGGACAG+AGG + tig0025516:21039-21058 Msa1423210:three_prime_UTR 55.0%
! GCAGGCCTAGCCTTTATCAG+GGG + tig0025516:21099-21118 Msa1423210:three_prime_UTR 55.0%
GATCTGAGCGAAGCTGCAGC+CGG + tig0025516:16198-16217 Msa1423210:five_prime_UTR 60.0%
CCGACGACGAGAACGAACAC+CGG - tig0025516:16220-16239 None:intergenic 60.0%
CCGGTGTTCGTTCTCGTCGT+CGG + tig0025516:16217-16236 Msa1423210:five_prime_UTR 60.0%
AAATGCGGCGAAATCGCGGC+GGG - tig0025516:16288-16307 None:intergenic 60.0%
TGGAGTTGCCAAGCATGGGG+TGG + tig0025516:16490-16509 Msa1423210:CDS 60.0%
GGAGTTGCCAAGCATGGGGT+GGG + tig0025516:16491-16510 Msa1423210:CDS 60.0%
CGGGAAATGGATCGAGCTCC+AGG + tig0025516:16740-16759 Msa1423210:CDS 60.0%
ATGCCGCACATTCCTGGTCC+TGG + tig0025516:16904-16923 Msa1423210:CDS 60.0%
GGACCAGGACCAGGAATGTG+CGG - tig0025516:16910-16929 None:intergenic 60.0%
TTCGGCCAACGCCACAAGGT+GGG + tig0025516:17215-17234 Msa1423210:intron 60.0%
GCCTGGGCACAACGTTAAGG+TGG + tig0025516:18346-18365 Msa1423210:intron 60.0%
GCCACCTTAACGTTGTGCCC+AGG - tig0025516:18350-18369 None:intergenic 60.0%
CCTTACACCCGCAAGCAGAG+AGG - tig0025516:18415-18434 None:intergenic 60.0%
CCTCTCTGCTTGCGGGTGTA+AGG + tig0025516:18412-18431 Msa1423210:intron 60.0%
TACCCTCCCTAGATCCCACG+TGG + tig0025516:18446-18465 Msa1423210:intron 60.0%
ACCCTCCCTAGATCCCACGT+GGG + tig0025516:18447-18466 Msa1423210:intron 60.0%
TCCCACGTGGGATCTAGGGA+GGG - tig0025516:18451-18470 None:intergenic 60.0%
ATCCCACGTGGGATCTAGGG+AGG - tig0025516:18452-18471 None:intergenic 60.0%
GAGGATCCCACGTGGGATCT+AGG - tig0025516:18456-18475 None:intergenic 60.0%
GTAGGACCAATACCGGCCAC+CGG + tig0025516:19077-19096 Msa1423210:intron 60.0%
TTGGGTGTGAGGCTGTGAGC+AGG + tig0025516:19627-19646 Msa1423210:intron 60.0%
GGCAGCCTCTTGAGCAGACA+TGG - tig0025516:20262-20281 None:intergenic 60.0%
AGAGGCAGCAAAGGAGGCAG+AGG + tig0025516:20335-20354 Msa1423210:CDS 60.0%
! GACATGAGGAGCGTGGTCCA+TGG + tig0025516:21021-21040 Msa1423210:three_prime_UTR 60.0%
! AGGAGCGTGGTCCATGGTGT+TGG + tig0025516:21027-21046 Msa1423210:three_prime_UTR 60.0%
GGAGCGTGGTCCATGGTGTT+GGG + tig0025516:21028-21047 Msa1423210:three_prime_UTR 60.0%
! CGTGGTCCATGGTGTTGGGT+AGG + tig0025516:21032-21051 Msa1423210:three_prime_UTR 60.0%
TTGGGTAGGACAGAGGCAGC+CGG + tig0025516:21046-21065 Msa1423210:three_prime_UTR 60.0%
!! TGTGGCGTTGGCCGAAGCGA+TGG - tig0025516:17211-17230 None:intergenic 65.0%
TCGCTTCGGCCAACGCCACA+AGG + tig0025516:17211-17230 Msa1423210:intron 65.0%
CTTCGGCCAACGCCACAAGG+TGG + tig0025516:17214-17233 Msa1423210:intron 65.0%
AGCGCACGAGGATCCCACGT+GGG - tig0025516:18463-18482 None:intergenic 65.0%
AGTCTGCCGGTGGCCGGTAT+TGG - tig0025516:19086-19105 None:intergenic 65.0%
CAGCGCACGAGGATCCCACG+TGG - tig0025516:18464-18483 None:intergenic 70.0%
CACGTGGGATCCTCGTGCGC+TGG + tig0025516:18462-18481 Msa1423210:intron 70.0%
Chromosome Type Strat End Strand Name
tig0025516 gene 16087 21698 16087 ID=Msa1423210;Name=Msa1423210
tig0025516 mRNA 16087 21698 16087 ID=Msa1423210-mRNA-1;Parent=Msa1423210;Name=Msa1423210-mRNA-1;_AED=0.31;_eAED=0.31;_QI=255|1|1|1|0.83|0.71|7|696|301
tig0025516 exon 16087 16313 16087 ID=Msa1423210-mRNA-1:exon:3098;Parent=Msa1423210-mRNA-1
tig0025516 exon 16409 16586 16409 ID=Msa1423210-mRNA-1:exon:3099;Parent=Msa1423210-mRNA-1
tig0025516 exon 16715 16935 16715 ID=Msa1423210-mRNA-1:exon:3100;Parent=Msa1423210-mRNA-1
tig0025516 exon 17818 17902 17818 ID=Msa1423210-mRNA-1:exon:3101;Parent=Msa1423210-mRNA-1
tig0025516 exon 19081 19164 19081 ID=Msa1423210-mRNA-1:exon:3102;Parent=Msa1423210-mRNA-1
tig0025516 exon 20090 20440 20090 ID=Msa1423210-mRNA-1:exon:3103;Parent=Msa1423210-mRNA-1
tig0025516 exon 20988 21698 20988 ID=Msa1423210-mRNA-1:exon:3104;Parent=Msa1423210-mRNA-1
tig0025516 five_prime_UTR 16087 16313 16087 ID=Msa1423210-mRNA-1:five_prime_utr;Parent=Msa1423210-mRNA-1
tig0025516 five_prime_UTR 16409 16436 16409 ID=Msa1423210-mRNA-1:five_prime_utr;Parent=Msa1423210-mRNA-1
tig0025516 CDS 16437 16586 16437 ID=Msa1423210-mRNA-1:cds;Parent=Msa1423210-mRNA-1
tig0025516 CDS 16715 16935 16715 ID=Msa1423210-mRNA-1:cds;Parent=Msa1423210-mRNA-1
tig0025516 CDS 17818 17902 17818 ID=Msa1423210-mRNA-1:cds;Parent=Msa1423210-mRNA-1
tig0025516 CDS 19081 19164 19081 ID=Msa1423210-mRNA-1:cds;Parent=Msa1423210-mRNA-1
tig0025516 CDS 20090 20440 20090 ID=Msa1423210-mRNA-1:cds;Parent=Msa1423210-mRNA-1
tig0025516 CDS 20988 21002 20988 ID=Msa1423210-mRNA-1:cds;Parent=Msa1423210-mRNA-1
tig0025516 three_prime_UTR 21003 21698 21003 ID=Msa1423210-mRNA-1:three_prime_utr;Parent=Msa1423210-mRNA-1
Gene Sequence

>Msa1423210

ATGGGTGCTCCTAAGCAGAAATGGACATCAGAAGAGGAAGCAGCTCTTAAAGCTGGAGTTGCCAAGCATGGGGTGGGAAAATGGCGTACAATAATCAAGGATCCTGAATTTAATCGTGTCTTGTTTATTCGCTCAAATGTCGATCTCAAGGATAAATGGAGAAATTTGAGTGTGACGGGAAATGGATCGAGCTCCAGGGAGAAGTCTAAGGGAGCAATCAAAAGGGTGAATCATCCGGTACCGAAACAGGATGACAACTCTATGGCTATCACTGCCGTTACTGGTCCATCCGATGATGATGAAATTGTTGATGCCCAGCCTCTTCAAGTCTCAAGAGACATGCCGCACATTCCTGGTCCTGGTCCAAAAAGATTAGATAACCTTATATTGGAAGCTATATCTAGCTTGAATGAGCTTGGTGGTTCTAATACAACAACTATTGCTTCTTTCATAGAGGACCAATACCGGCCACCGGCAGACTTCAAAAAGTTGTTGTCAGCAAAACTAAAGTATCTTACATCTAGCGGAAAACTGATCAAGGTGAAACGCAGGTATAGGATTGCACCTACCCCTGCATATTCAGACAGAGGAAGACACCCACCCATGTTATTATTGGAAGGGAGGCAGAAAATCTCTATGAAATTGGACAGGGATGAGAGAAAATACCCTACAAAGTCTGAGATAGATTTAGAAATAGAAAAGGTAAGGTCCATGTCTGCTCAAGAGGCTGCCGCATATGCTGCTCGAGCAGTCGCTGATGCAGAAGCCGCCATAGCAGAAGCTGAAGAGGCAGCAAAGGAGGCAGAGGCTGCAGAAGCAGATGCAGCTGCAGCAGAAGCTTTTGCAGAAGCTGCAATGAAAACACTGAAGGGGAGAAACACCTCAGAGACGACGATCCCGTCTTGA
Protein sequence

>Msa1423210

MGAPKQKWTSEEEAALKAGVAKHGVGKWRTIIKDPEFNRVLFIRSNVDLKDKWRNLSVTGNGSSSREKSKGAIKRVNHPVPKQDDNSMAITAVTGPSDDDEIVDAQPLQVSRDMPHIPGPGPKRLDNLILEAISSLNELGGSNTTTIASFIEDQYRPPADFKKLLSAKLKYLTSSGKLIKVKRRYRIAPTPAYSDRGRHPPMLLLEGRQKISMKLDRDERKYPTKSEIDLEIEKVRSMSAQEAAAYAARAVADAEAAIAEAEEAAKEAEAAEADAAAAEAFAEAAMKTLKGRNTSETTIPS*