Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423500 | A0A072UB72 | 49.412 | 85 | 42 | 1 | 114 | 198 | 61 | 144 | 1.18e-16 | 86.7 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1423500 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423500 | MtrunA17_Chr6g0459981 | 35.577 | 104 | 62 | 3 | 98 | 201 | 62 | 160 | 1.09e-13 | 66.2 |
| Msa1423500 | MtrunA17_Chr2g0281511 | 30.252 | 119 | 77 | 2 | 83 | 199 | 6 | 120 | 1.65e-13 | 64.7 |
| Msa1423500 | MtrunA17_Chr2g0309121 | 34.524 | 84 | 54 | 1 | 116 | 199 | 37 | 119 | 4.44e-13 | 63.5 |
| Msa1423500 | MtrunA17_Chr5g0430431 | 32.381 | 105 | 62 | 1 | 97 | 201 | 165 | 260 | 6.26e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAACTTATCACTTCAAAT+AGG | 0.238418 | tig0025559:-54359 | Msa1423500:CDS |
| TCACCTAAGTATTTCTCATT+TGG | 0.308885 | tig0025559:+54333 | Msa1423500:intergenic |
| CAAACTTATCACTTCAAATA+GGG | 0.313955 | tig0025559:-54358 | Msa1423500:CDS |
| GCAGTTGATAGATATCTTAT+TGG | 0.337824 | tig0025559:+54443 | Msa1423500:intergenic |
| CAGGTTCAAGATGATGGTTT+TGG | 0.363392 | tig0025559:-54724 | Msa1423500:CDS |
| CAGTTGATAGATATCTTATT+GGG | 0.382252 | tig0025559:+54444 | Msa1423500:intergenic |
| TCTACTATCCTTCACGAACT+TGG | 0.384344 | tig0025559:+54302 | Msa1423500:intergenic |
| ACAGGAGAGCATTACTTTGC+AGG | 0.396717 | tig0025559:-54409 | Msa1423500:CDS |
| TAAGTTTGCACTCATATTCT+CGG | 0.417716 | tig0025559:+54373 | Msa1423500:intergenic |
| AACTATCATTTATCCACAAC+AGG | 0.425989 | tig0025559:-55078 | Msa1423500:intron |
| GGTTGTCCGACGTCGTCGTT+AGG | 0.436504 | tig0025559:-54217 | None:intergenic |
| ACCTCCACAAAGAGACGATT+GGG | 0.451863 | tig0025559:+54237 | Msa1423500:intergenic |
| AGAAATACTTAGGTGAAGAT+TGG | 0.462766 | tig0025559:-54326 | Msa1423500:CDS |
| TCCTCCCAATCGTCTCTTTG+TGG | 0.465471 | tig0025559:-54241 | Msa1423500:CDS |
| GTAATGCTCTCCTGTGTGTC+GGG | 0.473972 | tig0025559:+54417 | Msa1423500:intergenic |
| TGGATGAAGTTGGAAGTTCA+AGG | 0.497813 | tig0025559:-54701 | Msa1423500:CDS |
| GGTCCAAATGAGAAATACTT+AGG | 0.515401 | tig0025559:-54336 | Msa1423500:CDS |
| TGGATAAATGATAGTTTCGA+AGG | 0.529484 | tig0025559:+55085 | Msa1423500:intergenic |
| TTTATTTCAGGAACATGTGC+CGG | 0.529734 | tig0025559:-56198 | Msa1423500:intron |
| CTACTATCCTTCACGAACTT+GGG | 0.542504 | tig0025559:+54303 | Msa1423500:intergenic |
| AACCTCCACAAAGAGACGAT+TGG | 0.547571 | tig0025559:+54236 | Msa1423500:intergenic |
| CAACAAGAGATGTCAAGTAA+TGG | 0.551729 | tig0025559:-54571 | Msa1423500:intron |
| TTCAAGGGGAAATACAATCA+AGG | 0.560197 | tig0025559:-54685 | Msa1423500:CDS |
| TCCCAATCGTCTCTTTGTGG+AGG | 0.560244 | tig0025559:-54238 | Msa1423500:CDS |
| GGATGAAGTTGGAAGTTCAA+GGG | 0.560255 | tig0025559:-54700 | Msa1423500:CDS |
| AGTAATGCTCTCCTGTGTGT+CGG | 0.561176 | tig0025559:+54416 | Msa1423500:intergenic |
| TCGTGAAGGATAGTAGACTA+AGG | 0.562838 | tig0025559:-54296 | Msa1423500:CDS |
| AAACTTATCACTTCAAATAG+GGG | 0.599416 | tig0025559:-54357 | Msa1423500:CDS |
| ATAAACTCCATAAAATCCGC+CGG | 0.625808 | tig0025559:+56179 | Msa1423500:intergenic |
| GATGAAGTTGGAAGTTCAAG+GGG | 0.628048 | tig0025559:-54699 | Msa1423500:CDS |
| AAGGATAGTAGACTAAGGAA+AGG | 0.649294 | tig0025559:-54291 | Msa1423500:CDS |
| CAACTGCTTACCCGACACAC+AGG | 0.661269 | tig0025559:-54427 | Msa1423500:CDS |
| TCCACAAAGAGACGATTGGG+AGG | 0.661851 | tig0025559:+54240 | Msa1423500:intergenic |
| ATTTCAGGAACATGTGCCGG+CGG | 0.666355 | tig0025559:-56195 | Msa1423500:intron |
| TAATATCCTAACGACGACGT+CGG | 0.679159 | tig0025559:+54211 | Msa1423500:intergenic |
| AGATTGGCCCAAGTTCGTGA+AGG | 0.685876 | tig0025559:-54310 | Msa1423500:CDS |
| TAGTTTCGAAGGAATTCACG+AGG | 0.693574 | tig0025559:+55096 | Msa1423500:intergenic |
| TGTAGCGAGAGTTTATGTAG+CGG | 0.695764 | tig0025559:-56157 | Msa1423500:CDS |
| AGTTTCGAAGGAATTCACGA+GGG | 0.715405 | tig0025559:+55097 | Msa1423490:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTTAAAATATTTATTTC+AGG | - | tig0025559:54241-54260 | Msa1423500:CDS | 10.0% |
| !! | ATTAATCTATTATAAAACAA+CGG | - | tig0025559:54606-54625 | Msa1423500:CDS | 10.0% |
| !!! | TTTTTATTATATTCTTTCTA+TGG | + | tig0025559:55241-55260 | Msa1423500:intergenic | 10.0% |
| !! | GTTCATAAATAATATTAATT+TGG | + | tig0025559:55915-55934 | Msa1423500:intergenic | 10.0% |
| !! | ATTGTTAAAATATTTATTTC+AGG | - | tig0025559:54241-54260 | Msa1423500:CDS | 10.0% |
| !! | ATTAATCTATTATAAAACAA+CGG | - | tig0025559:54606-54625 | Msa1423500:CDS | 10.0% |
| !!! | TTTTTATTATATTCTTTCTA+TGG | + | tig0025559:55241-55260 | Msa1423500:intergenic | 10.0% |
| !! | GTTCATAAATAATATTAATT+TGG | + | tig0025559:55915-55934 | Msa1423500:intergenic | 10.0% |
| !! | TTTCAGTAACAAAAAAAATT+TGG | + | tig0025559:55067-55086 | Msa1423500:intergenic | 15.0% |
| !! | ATACATATTTATGATTTAAC+AGG | - | tig0025559:55164-55183 | Msa1423500:intron | 15.0% |
| !!! | ATATTTTATCAAATTTCGTA+TGG | - | tig0025559:55440-55459 | Msa1423500:intron | 15.0% |
| !! | TTTCAGTAACAAAAAAAATT+TGG | + | tig0025559:55067-55086 | Msa1423500:intergenic | 15.0% |
| !! | ATACATATTTATGATTTAAC+AGG | - | tig0025559:55164-55183 | Msa1423500:intron | 15.0% |
| !!! | ATATTTTATCAAATTTCGTA+TGG | - | tig0025559:55440-55459 | Msa1423500:intron | 15.0% |
| !!! | GAACTTTTACATTTGTTTAA+TGG | - | tig0025559:54418-54437 | Msa1423500:CDS | 20.0% |
| !! | ACTGATCACATTTATATTAA+AGG | + | tig0025559:54504-54523 | Msa1423500:intergenic | 20.0% |
| !!! | AATATTAGTCTTTAAGCATA+AGG | + | tig0025559:54561-54580 | Msa1423500:intergenic | 20.0% |
| !! | TAAAACATAGAAGGTAATAT+GGG | - | tig0025559:54980-54999 | Msa1423500:intron | 20.0% |
| !!! | GAACTTTTACATTTGTTTAA+TGG | - | tig0025559:54418-54437 | Msa1423500:CDS | 20.0% |
| !! | ACTGATCACATTTATATTAA+AGG | + | tig0025559:54504-54523 | Msa1423500:intergenic | 20.0% |
| !!! | AATATTAGTCTTTAAGCATA+AGG | + | tig0025559:54561-54580 | Msa1423500:intergenic | 20.0% |
| !! | TAAAACATAGAAGGTAATAT+GGG | - | tig0025559:54980-54999 | Msa1423500:intron | 20.0% |
| !!! | ATTATTTGTTGTTTGAACCT+TGG | - | tig0025559:54370-54389 | Msa1423500:CDS | 25.0% |
| !! | TATTAAAGGTGCATTCATTA+CGG | + | tig0025559:54490-54509 | Msa1423500:intergenic | 25.0% |
| !!! | GCAAAAAAAGTACTAACATT+TGG | - | tig0025559:54633-54652 | Msa1423500:CDS | 25.0% |
| ! | CACTATTACTATATTTACGA+TGG | + | tig0025559:54933-54952 | Msa1423500:intergenic | 25.0% |
| ! | CATCGTAAATATAGTAATAG+TGG | - | tig0025559:54931-54950 | Msa1423500:CDS | 25.0% |
| ! | CTAAAACATAGAAGGTAATA+TGG | - | tig0025559:54979-54998 | Msa1423500:intron | 25.0% |
| !! | TTTTTACATATCCCATGTTA+TGG | - | tig0025559:55202-55221 | Msa1423500:intron | 25.0% |
| !! | ATATTTTGTAATACCTGTTG+TGG | + | tig0025559:55389-55408 | Msa1423500:intergenic | 25.0% |
| ! | AGGTATTACAAAATATTGCT+TGG | - | tig0025559:55393-55412 | Msa1423500:intron | 25.0% |
| ! | ATATAAGATGTATAAGTCAG+GGG | + | tig0025559:55466-55485 | Msa1423500:intergenic | 25.0% |
| ! | CATATAAGATGTATAAGTCA+GGG | + | tig0025559:55467-55486 | Msa1423500:intergenic | 25.0% |
| ! | ACATATAAGATGTATAAGTC+AGG | + | tig0025559:55468-55487 | Msa1423500:intergenic | 25.0% |
| !! | AAACTGCAAAAGTATGATTA+TGG | - | tig0025559:55554-55573 | Msa1423500:intron | 25.0% |
| !!! | CAGTTGATAGATATCTTATT+GGG | + | tig0025559:56010-56029 | Msa1423500:intergenic | 25.0% |
| ! | CAAACTTATCACTTCAAATA+GGG | - | tig0025559:56093-56112 | Msa1423500:intron | 25.0% |
| ! | AAACTTATCACTTCAAATAG+GGG | - | tig0025559:56094-56113 | Msa1423500:intron | 25.0% |
| !!! | ATTATTTGTTGTTTGAACCT+TGG | - | tig0025559:54370-54389 | Msa1423500:CDS | 25.0% |
| !! | TATTAAAGGTGCATTCATTA+CGG | + | tig0025559:54490-54509 | Msa1423500:intergenic | 25.0% |
| !!! | GCAAAAAAAGTACTAACATT+TGG | - | tig0025559:54633-54652 | Msa1423500:CDS | 25.0% |
| ! | CACTATTACTATATTTACGA+TGG | + | tig0025559:54933-54952 | Msa1423500:intergenic | 25.0% |
| ! | CATCGTAAATATAGTAATAG+TGG | - | tig0025559:54931-54950 | Msa1423500:CDS | 25.0% |
| ! | CTAAAACATAGAAGGTAATA+TGG | - | tig0025559:54979-54998 | Msa1423500:intron | 25.0% |
| !! | TTTTTACATATCCCATGTTA+TGG | - | tig0025559:55202-55221 | Msa1423500:intron | 25.0% |
| !! | ATATTTTGTAATACCTGTTG+TGG | + | tig0025559:55389-55408 | Msa1423500:intergenic | 25.0% |
| ! | AGGTATTACAAAATATTGCT+TGG | - | tig0025559:55393-55412 | Msa1423500:intron | 25.0% |
| ! | ATATAAGATGTATAAGTCAG+GGG | + | tig0025559:55466-55485 | Msa1423500:intergenic | 25.0% |
| ! | CATATAAGATGTATAAGTCA+GGG | + | tig0025559:55467-55486 | Msa1423500:intergenic | 25.0% |
| ! | ACATATAAGATGTATAAGTC+AGG | + | tig0025559:55468-55487 | Msa1423500:intergenic | 25.0% |
| !! | AAACTGCAAAAGTATGATTA+TGG | - | tig0025559:55554-55573 | Msa1423500:intron | 25.0% |
| !!! | CAGTTGATAGATATCTTATT+GGG | + | tig0025559:56010-56029 | Msa1423500:intergenic | 25.0% |
| ! | CAAACTTATCACTTCAAATA+GGG | - | tig0025559:56093-56112 | Msa1423500:intron | 25.0% |
| ! | AAACTTATCACTTCAAATAG+GGG | - | tig0025559:56094-56113 | Msa1423500:intron | 25.0% |
| ATTAAGATTACAGTCATCCA+AGG | + | tig0025559:54390-54409 | Msa1423500:intergenic | 30.0% | |
| ! | TCTTTAAGCATAAGGCATTA+AGG | + | tig0025559:54553-54572 | Msa1423500:intergenic | 30.0% |
| ! | CATTTGGTAATTAGCAAACA+AGG | - | tig0025559:54649-54668 | Msa1423500:CDS | 30.0% |
| AGAATGCTTCCTTGATTTAT+GGG | + | tig0025559:54740-54759 | Msa1423500:intergenic | 30.0% | |
| TAGAATGCTTCCTTGATTTA+TGG | + | tig0025559:54741-54760 | Msa1423500:intergenic | 30.0% | |
| !! | AAAACGCTTTGTTGTTGTAA+GGG | + | tig0025559:54775-54794 | Msa1423500:intergenic | 30.0% |
| !! | TAAAACGCTTTGTTGTTGTA+AGG | + | tig0025559:54776-54795 | Msa1423500:intergenic | 30.0% |
| ! | AGAGTAAAATTACCTTTTCC+CGG | + | tig0025559:54873-54892 | Msa1423500:intergenic | 30.0% |
| ! | GTAATATGGGTTCTTTTCTA+GGG | - | tig0025559:54993-55012 | Msa1423500:intron | 30.0% |
| CTAAACTTGATAAGGATATG+TGG | + | tig0025559:55091-55110 | Msa1423500:intergenic | 30.0% | |
| CACATATCCTTATCAAGTTT+AGG | - | tig0025559:55089-55108 | Msa1423500:CDS | 30.0% | |
| ! | ACATGCAATTTTGTAATGAG+TGG | - | tig0025559:55124-55143 | Msa1423500:CDS | 30.0% |
| ATATCCCATGTTATGGAATT+CGG | - | tig0025559:55209-55228 | Msa1423500:intron | 30.0% | |
| TGGATAAATGATAGTTTCGA+AGG | + | tig0025559:55369-55388 | Msa1423500:intergenic | 30.0% | |
| AACTATCATTTATCCACAAC+AGG | - | tig0025559:55373-55392 | Msa1423500:intron | 30.0% | |
| ! | TGCAAAAGTATGATTATGGA+TGG | - | tig0025559:55558-55577 | Msa1423500:intron | 30.0% |
| ! | AGTATGATTATGGATGGATT+AGG | - | tig0025559:55564-55583 | Msa1423500:intron | 30.0% |
| !! | GTATGATTATGGATGGATTA+GGG | - | tig0025559:55565-55584 | Msa1423500:intron | 30.0% |
| ! | TTTTAACAGGTTCAAGATGA+TGG | - | tig0025559:55721-55740 | Msa1423500:intron | 30.0% |
| ! | CTGATTATGATCATTTTGAG+AGG | - | tig0025559:55834-55853 | Msa1423500:intron | 30.0% |
| !! | GCAGTTGATAGATATCTTAT+TGG | + | tig0025559:56011-56030 | Msa1423500:intergenic | 30.0% |
| TAAGTTTGCACTCATATTCT+CGG | + | tig0025559:56081-56100 | Msa1423500:intergenic | 30.0% | |
| GCAAACTTATCACTTCAAAT+AGG | - | tig0025559:56092-56111 | Msa1423500:intron | 30.0% | |
| TCACCTAAGTATTTCTCATT+TGG | + | tig0025559:56121-56140 | Msa1423500:intergenic | 30.0% | |
| AGAAATACTTAGGTGAAGAT+TGG | - | tig0025559:56125-56144 | Msa1423500:intron | 30.0% | |
| ATTAAGATTACAGTCATCCA+AGG | + | tig0025559:54390-54409 | Msa1423500:intergenic | 30.0% | |
| ! | TCTTTAAGCATAAGGCATTA+AGG | + | tig0025559:54553-54572 | Msa1423500:intergenic | 30.0% |
| ! | CATTTGGTAATTAGCAAACA+AGG | - | tig0025559:54649-54668 | Msa1423500:CDS | 30.0% |
| AGAATGCTTCCTTGATTTAT+GGG | + | tig0025559:54740-54759 | Msa1423500:intergenic | 30.0% | |
| TAGAATGCTTCCTTGATTTA+TGG | + | tig0025559:54741-54760 | Msa1423500:intergenic | 30.0% | |
| !! | AAAACGCTTTGTTGTTGTAA+GGG | + | tig0025559:54775-54794 | Msa1423500:intergenic | 30.0% |
| !! | TAAAACGCTTTGTTGTTGTA+AGG | + | tig0025559:54776-54795 | Msa1423500:intergenic | 30.0% |
| ! | AGAGTAAAATTACCTTTTCC+CGG | + | tig0025559:54873-54892 | Msa1423500:intergenic | 30.0% |
| ! | GTAATATGGGTTCTTTTCTA+GGG | - | tig0025559:54993-55012 | Msa1423500:intron | 30.0% |
| CTAAACTTGATAAGGATATG+TGG | + | tig0025559:55091-55110 | Msa1423500:intergenic | 30.0% | |
| CACATATCCTTATCAAGTTT+AGG | - | tig0025559:55089-55108 | Msa1423500:CDS | 30.0% | |
| ! | ACATGCAATTTTGTAATGAG+TGG | - | tig0025559:55124-55143 | Msa1423500:CDS | 30.0% |
| ATATCCCATGTTATGGAATT+CGG | - | tig0025559:55209-55228 | Msa1423500:intron | 30.0% | |
| TGGATAAATGATAGTTTCGA+AGG | + | tig0025559:55369-55388 | Msa1423500:intergenic | 30.0% | |
| AACTATCATTTATCCACAAC+AGG | - | tig0025559:55373-55392 | Msa1423500:intron | 30.0% | |
| ! | TGCAAAAGTATGATTATGGA+TGG | - | tig0025559:55558-55577 | Msa1423500:intron | 30.0% |
| ! | AGTATGATTATGGATGGATT+AGG | - | tig0025559:55564-55583 | Msa1423500:intron | 30.0% |
| !! | GTATGATTATGGATGGATTA+GGG | - | tig0025559:55565-55584 | Msa1423500:intron | 30.0% |
| ! | TTTTAACAGGTTCAAGATGA+TGG | - | tig0025559:55721-55740 | Msa1423500:intron | 30.0% |
| ! | CTGATTATGATCATTTTGAG+AGG | - | tig0025559:55834-55853 | Msa1423500:intron | 30.0% |
| !! | GCAGTTGATAGATATCTTAT+TGG | + | tig0025559:56011-56030 | Msa1423500:intergenic | 30.0% |
| TAAGTTTGCACTCATATTCT+CGG | + | tig0025559:56081-56100 | Msa1423500:intergenic | 30.0% | |
| GCAAACTTATCACTTCAAAT+AGG | - | tig0025559:56092-56111 | Msa1423500:intron | 30.0% | |
| TCACCTAAGTATTTCTCATT+TGG | + | tig0025559:56121-56140 | Msa1423500:intergenic | 30.0% | |
| AGAAATACTTAGGTGAAGAT+TGG | - | tig0025559:56125-56144 | Msa1423500:intron | 30.0% | |
| TTTATTTCAGGAACATGTGC+CGG | - | tig0025559:54253-54272 | Msa1423500:CDS | 35.0% | |
| ATAAACTCCATAAAATCCGC+CGG | + | tig0025559:54275-54294 | Msa1423500:intergenic | 35.0% | |
| TGTGATCAGTTACATTTCAG+TGG | - | tig0025559:54514-54533 | Msa1423500:intron | 35.0% | |
| GTGATCAGTTACATTTCAGT+GGG | - | tig0025559:54515-54534 | Msa1423500:intron | 35.0% | |
| GTTGCATAGAACTAATTCAC+AGG | - | tig0025559:54689-54708 | Msa1423500:CDS | 35.0% | |
| TATTTGGTCCGTGTAAAGTT+GGG | + | tig0025559:54715-54734 | Msa1423500:intergenic | 35.0% | |
| !! | AAACGCTTTGTTGTTGTAAG+GGG | + | tig0025559:54774-54793 | Msa1423500:intergenic | 35.0% |
| TGAAATGGACGAGATTTATG+TGG | + | tig0025559:54800-54819 | Msa1423500:intergenic | 35.0% | |
| TAAGGTGGCTAAAACATAGA+AGG | - | tig0025559:54971-54990 | Msa1423500:intron | 35.0% | |
| ! | GGTAATATGGGTTCTTTTCT+AGG | - | tig0025559:54992-55011 | Msa1423500:intron | 35.0% |
| ! | TACCAGAAGTCGTGAAATTT+TGG | + | tig0025559:55637-55656 | Msa1423500:intergenic | 35.0% |
| AAAATTTCACGACTTCTGGT+AGG | - | tig0025559:55636-55655 | Msa1423500:intron | 35.0% | |
| AAATTTCACGACTTCTGGTA+GGG | - | tig0025559:55637-55656 | Msa1423500:intron | 35.0% | |
| TATTCAAGTCTAACACGTGT+TGG | + | tig0025559:55692-55711 | Msa1423500:intergenic | 35.0% | |
| CGTGTTAGACTTGAATATAC+TGG | - | tig0025559:55695-55714 | Msa1423500:intron | 35.0% | |
| ! | AATATACTGGCGCTTTTAAC+AGG | - | tig0025559:55708-55727 | Msa1423500:intron | 35.0% |
| TTCAAGGGGAAATACAATCA+AGG | - | tig0025559:55766-55785 | Msa1423500:intron | 35.0% | |
| CAACAAGAGATGTCAAGTAA+TGG | - | tig0025559:55880-55899 | Msa1423500:intron | 35.0% | |
| GGTCCAAATGAGAAATACTT+AGG | - | tig0025559:56115-56134 | Msa1423500:intron | 35.0% | |
| AAGGATAGTAGACTAAGGAA+AGG | - | tig0025559:56160-56179 | Msa1423500:CDS | 35.0% | |
| TTTATTTCAGGAACATGTGC+CGG | - | tig0025559:54253-54272 | Msa1423500:CDS | 35.0% | |
| ATAAACTCCATAAAATCCGC+CGG | + | tig0025559:54275-54294 | Msa1423500:intergenic | 35.0% | |
| TGTGATCAGTTACATTTCAG+TGG | - | tig0025559:54514-54533 | Msa1423500:intron | 35.0% | |
| GTGATCAGTTACATTTCAGT+GGG | - | tig0025559:54515-54534 | Msa1423500:intron | 35.0% | |
| GTTGCATAGAACTAATTCAC+AGG | - | tig0025559:54689-54708 | Msa1423500:CDS | 35.0% | |
| TATTTGGTCCGTGTAAAGTT+GGG | + | tig0025559:54715-54734 | Msa1423500:intergenic | 35.0% | |
| !! | AAACGCTTTGTTGTTGTAAG+GGG | + | tig0025559:54774-54793 | Msa1423500:intergenic | 35.0% |
| TGAAATGGACGAGATTTATG+TGG | + | tig0025559:54800-54819 | Msa1423500:intergenic | 35.0% | |
| TAAGGTGGCTAAAACATAGA+AGG | - | tig0025559:54971-54990 | Msa1423500:intron | 35.0% | |
| ! | GGTAATATGGGTTCTTTTCT+AGG | - | tig0025559:54992-55011 | Msa1423500:intron | 35.0% |
| ! | TACCAGAAGTCGTGAAATTT+TGG | + | tig0025559:55637-55656 | Msa1423500:intergenic | 35.0% |
| AAAATTTCACGACTTCTGGT+AGG | - | tig0025559:55636-55655 | Msa1423500:intron | 35.0% | |
| AAATTTCACGACTTCTGGTA+GGG | - | tig0025559:55637-55656 | Msa1423500:intron | 35.0% | |
| TATTCAAGTCTAACACGTGT+TGG | + | tig0025559:55692-55711 | Msa1423500:intergenic | 35.0% | |
| CGTGTTAGACTTGAATATAC+TGG | - | tig0025559:55695-55714 | Msa1423500:intron | 35.0% | |
| ! | AATATACTGGCGCTTTTAAC+AGG | - | tig0025559:55708-55727 | Msa1423500:intron | 35.0% |
| TTCAAGGGGAAATACAATCA+AGG | - | tig0025559:55766-55785 | Msa1423500:intron | 35.0% | |
| CAACAAGAGATGTCAAGTAA+TGG | - | tig0025559:55880-55899 | Msa1423500:intron | 35.0% | |
| GGTCCAAATGAGAAATACTT+AGG | - | tig0025559:56115-56134 | Msa1423500:intron | 35.0% | |
| AAGGATAGTAGACTAAGGAA+AGG | - | tig0025559:56160-56179 | Msa1423500:CDS | 35.0% | |
| TGTAGCGAGAGTTTATGTAG+CGG | - | tig0025559:54294-54313 | Msa1423500:CDS | 40.0% | |
| CTATTTGGTCCGTGTAAAGT+TGG | + | tig0025559:54716-54735 | Msa1423500:intergenic | 40.0% | |
| CAACTTTACACGGACCAAAT+AGG | - | tig0025559:54714-54733 | Msa1423500:CDS | 40.0% | |
| CCTTGATTTATGGGCCTATT+TGG | + | tig0025559:54731-54750 | Msa1423500:intergenic | 40.0% | |
| CCAAATAGGCCCATAAATCA+AGG | - | tig0025559:54728-54747 | Msa1423500:intron | 40.0% | |
| CCTTATCAAGTTTAGGCTGA+CGG | - | tig0025559:55096-55115 | Msa1423500:CDS | 40.0% | |
| TCCACCGAATTCCATAACAT+GGG | + | tig0025559:55216-55235 | Msa1423500:intergenic | 40.0% | |
| TTCCACCGAATTCCATAACA+TGG | + | tig0025559:55217-55236 | Msa1423500:intergenic | 40.0% | |
| AGTTTCGAAGGAATTCACGA+GGG | + | tig0025559:55357-55376 | Msa1423500:intergenic | 40.0% | |
| TAGTTTCGAAGGAATTCACG+AGG | + | tig0025559:55358-55377 | Msa1423500:intergenic | 40.0% | |
| ACCTGTGTACGAGTTAAGTT+TGG | - | tig0025559:55599-55618 | Msa1423500:intron | 40.0% | |
| CCTGTGTACGAGTTAAGTTT+GGG | - | tig0025559:55600-55619 | Msa1423500:intron | 40.0% | |
| AGCCAAAATTTCACGACTTC+TGG | - | tig0025559:55632-55651 | Msa1423500:intron | 40.0% | |
| !! | CAGGTTCAAGATGATGGTTT+TGG | - | tig0025559:55727-55746 | Msa1423500:intron | 40.0% |
| !!! | GTTCAAGATGATGGTTTTGG+TGG | - | tig0025559:55730-55749 | Msa1423500:intron | 40.0% |
| !!! | ATGGTTTTGGTGGATGAAGT+TGG | - | tig0025559:55740-55759 | Msa1423500:intron | 40.0% |
| TGGATGAAGTTGGAAGTTCA+AGG | - | tig0025559:55750-55769 | Msa1423500:intron | 40.0% | |
| GGATGAAGTTGGAAGTTCAA+GGG | - | tig0025559:55751-55770 | Msa1423500:intron | 40.0% | |
| GATGAAGTTGGAAGTTCAAG+GGG | - | tig0025559:55752-55771 | Msa1423500:intron | 40.0% | |
| CTACTATCCTTCACGAACTT+GGG | + | tig0025559:56151-56170 | Msa1423500:intergenic | 40.0% | |
| TCTACTATCCTTCACGAACT+TGG | + | tig0025559:56152-56171 | Msa1423500:intergenic | 40.0% | |
| TCGTGAAGGATAGTAGACTA+AGG | - | tig0025559:56155-56174 | Msa1423500:intron | 40.0% | |
| TGTAGCGAGAGTTTATGTAG+CGG | - | tig0025559:54294-54313 | Msa1423500:CDS | 40.0% | |
| CTATTTGGTCCGTGTAAAGT+TGG | + | tig0025559:54716-54735 | Msa1423500:intergenic | 40.0% | |
| CAACTTTACACGGACCAAAT+AGG | - | tig0025559:54714-54733 | Msa1423500:CDS | 40.0% | |
| CCTTGATTTATGGGCCTATT+TGG | + | tig0025559:54731-54750 | Msa1423500:intergenic | 40.0% | |
| CCAAATAGGCCCATAAATCA+AGG | - | tig0025559:54728-54747 | Msa1423500:intron | 40.0% | |
| CCTTATCAAGTTTAGGCTGA+CGG | - | tig0025559:55096-55115 | Msa1423500:CDS | 40.0% | |
| TCCACCGAATTCCATAACAT+GGG | + | tig0025559:55216-55235 | Msa1423500:intergenic | 40.0% | |
| TTCCACCGAATTCCATAACA+TGG | + | tig0025559:55217-55236 | Msa1423500:intergenic | 40.0% | |
| AGTTTCGAAGGAATTCACGA+GGG | + | tig0025559:55357-55376 | Msa1423500:intergenic | 40.0% | |
| TAGTTTCGAAGGAATTCACG+AGG | + | tig0025559:55358-55377 | Msa1423500:intergenic | 40.0% | |
| ACCTGTGTACGAGTTAAGTT+TGG | - | tig0025559:55599-55618 | Msa1423500:intron | 40.0% | |
| CCTGTGTACGAGTTAAGTTT+GGG | - | tig0025559:55600-55619 | Msa1423500:intron | 40.0% | |
| AGCCAAAATTTCACGACTTC+TGG | - | tig0025559:55632-55651 | Msa1423500:intron | 40.0% | |
| !! | CAGGTTCAAGATGATGGTTT+TGG | - | tig0025559:55727-55746 | Msa1423500:intron | 40.0% |
| !!! | GTTCAAGATGATGGTTTTGG+TGG | - | tig0025559:55730-55749 | Msa1423500:intron | 40.0% |
| !!! | ATGGTTTTGGTGGATGAAGT+TGG | - | tig0025559:55740-55759 | Msa1423500:intron | 40.0% |
| TGGATGAAGTTGGAAGTTCA+AGG | - | tig0025559:55750-55769 | Msa1423500:intron | 40.0% | |
| GGATGAAGTTGGAAGTTCAA+GGG | - | tig0025559:55751-55770 | Msa1423500:intron | 40.0% | |
| GATGAAGTTGGAAGTTCAAG+GGG | - | tig0025559:55752-55771 | Msa1423500:intron | 40.0% | |
| CTACTATCCTTCACGAACTT+GGG | + | tig0025559:56151-56170 | Msa1423500:intergenic | 40.0% | |
| TCTACTATCCTTCACGAACT+TGG | + | tig0025559:56152-56171 | Msa1423500:intergenic | 40.0% | |
| TCGTGAAGGATAGTAGACTA+AGG | - | tig0025559:56155-56174 | Msa1423500:intron | 40.0% | |
| TTCACAGGCCCAACTTTACA+CGG | - | tig0025559:54704-54723 | Msa1423500:CDS | 45.0% | |
| GCGAAAGGGTTTGAGTGAAA+TGG | + | tig0025559:54815-54834 | Msa1423500:intergenic | 45.0% | |
| ! | GTGTGTTGGTGAAAGCGAAA+GGG | + | tig0025559:54829-54848 | Msa1423500:intergenic | 45.0% |
| ! | AGTGTGTTGGTGAAAGCGAA+AGG | + | tig0025559:54830-54849 | Msa1423500:intergenic | 45.0% |
| ! | CGGTTGATTCCATTGGAAAG+CGG | + | tig0025559:54853-54872 | Msa1423500:intergenic | 45.0% |
| CGCTTTCCAATGGAATCAAC+CGG | - | tig0025559:54851-54870 | Msa1423500:intron | 45.0% | |
| GCTTTCCAATGGAATCAACC+GGG | - | tig0025559:54852-54871 | Msa1423500:intron | 45.0% | |
| !! | CTTTTCCCGGTTGATTCCAT+TGG | + | tig0025559:54860-54879 | Msa1423500:intergenic | 45.0% |
| CAATGGAATCAACCGGGAAA+AGG | - | tig0025559:54858-54877 | Msa1423500:intron | 45.0% | |
| ATAGTGGTCCCCTATAGTCT+TGG | - | tig0025559:54947-54966 | Msa1423500:intron | 45.0% | |
| CACCTTAGCCAAGACTATAG+GGG | + | tig0025559:54958-54977 | Msa1423500:intergenic | 45.0% | |
| CCACCTTAGCCAAGACTATA+GGG | + | tig0025559:54959-54978 | Msa1423500:intergenic | 45.0% | |
| CCGTCAGCCTAAACTTGATA+AGG | + | tig0025559:55099-55118 | Msa1423500:intergenic | 45.0% | |
| TCCCATGTTATGGAATTCGG+TGG | - | tig0025559:55212-55231 | Msa1423500:intron | 45.0% | |
| !! | GGATGGATTAGGGATCCAAA+TGG | - | tig0025559:55575-55594 | Msa1423500:intron | 45.0% |
| CCCAAACTTAACTCGTACAC+AGG | + | tig0025559:55603-55622 | Msa1423500:intergenic | 45.0% | |
| ACGTCGCAGCTAAATTCAAC+TGG | - | tig0025559:55660-55679 | Msa1423500:intron | 45.0% | |
| CGTCGCAGCTAAATTCAACT+GGG | - | tig0025559:55661-55680 | Msa1423500:intron | 45.0% | |
| AGTAATGCTCTCCTGTGTGT+CGG | + | tig0025559:56038-56057 | Msa1423500:intergenic | 45.0% | |
| !! | ACAGGAGAGCATTACTTTGC+AGG | - | tig0025559:56042-56061 | Msa1423500:intron | 45.0% |
| ACCTCCACAAAGAGACGATT+GGG | + | tig0025559:56217-56236 | Msa1423500:intergenic | 45.0% | |
| AACCTCCACAAAGAGACGAT+TGG | + | tig0025559:56218-56237 | Msa1423500:intergenic | 45.0% | |
| TTCACAGGCCCAACTTTACA+CGG | - | tig0025559:54704-54723 | Msa1423500:CDS | 45.0% | |
| GCGAAAGGGTTTGAGTGAAA+TGG | + | tig0025559:54815-54834 | Msa1423500:intergenic | 45.0% | |
| ! | GTGTGTTGGTGAAAGCGAAA+GGG | + | tig0025559:54829-54848 | Msa1423500:intergenic | 45.0% |
| ! | AGTGTGTTGGTGAAAGCGAA+AGG | + | tig0025559:54830-54849 | Msa1423500:intergenic | 45.0% |
| ! | CGGTTGATTCCATTGGAAAG+CGG | + | tig0025559:54853-54872 | Msa1423500:intergenic | 45.0% |
| CGCTTTCCAATGGAATCAAC+CGG | - | tig0025559:54851-54870 | Msa1423500:intron | 45.0% | |
| GCTTTCCAATGGAATCAACC+GGG | - | tig0025559:54852-54871 | Msa1423500:intron | 45.0% | |
| !! | CTTTTCCCGGTTGATTCCAT+TGG | + | tig0025559:54860-54879 | Msa1423500:intergenic | 45.0% |
| CAATGGAATCAACCGGGAAA+AGG | - | tig0025559:54858-54877 | Msa1423500:intron | 45.0% | |
| ATAGTGGTCCCCTATAGTCT+TGG | - | tig0025559:54947-54966 | Msa1423500:intron | 45.0% | |
| CACCTTAGCCAAGACTATAG+GGG | + | tig0025559:54958-54977 | Msa1423500:intergenic | 45.0% | |
| CCACCTTAGCCAAGACTATA+GGG | + | tig0025559:54959-54978 | Msa1423500:intergenic | 45.0% | |
| CCGTCAGCCTAAACTTGATA+AGG | + | tig0025559:55099-55118 | Msa1423500:intergenic | 45.0% | |
| TCCCATGTTATGGAATTCGG+TGG | - | tig0025559:55212-55231 | Msa1423500:intron | 45.0% | |
| !! | GGATGGATTAGGGATCCAAA+TGG | - | tig0025559:55575-55594 | Msa1423500:intron | 45.0% |
| CCCAAACTTAACTCGTACAC+AGG | + | tig0025559:55603-55622 | Msa1423500:intergenic | 45.0% | |
| ACGTCGCAGCTAAATTCAAC+TGG | - | tig0025559:55660-55679 | Msa1423500:intron | 45.0% | |
| CGTCGCAGCTAAATTCAACT+GGG | - | tig0025559:55661-55680 | Msa1423500:intron | 45.0% | |
| AGTAATGCTCTCCTGTGTGT+CGG | + | tig0025559:56038-56057 | Msa1423500:intergenic | 45.0% | |
| !! | ACAGGAGAGCATTACTTTGC+AGG | - | tig0025559:56042-56061 | Msa1423500:intron | 45.0% |
| ACCTCCACAAAGAGACGATT+GGG | + | tig0025559:56217-56236 | Msa1423500:intergenic | 45.0% | |
| AACCTCCACAAAGAGACGAT+TGG | + | tig0025559:56218-56237 | Msa1423500:intergenic | 45.0% | |
| ATTTCAGGAACATGTGCCGG+CGG | - | tig0025559:54256-54275 | Msa1423500:CDS | 50.0% | |
| !! | ACATGTGCCGGCGGATTTTA+TGG | - | tig0025559:54265-54284 | Msa1423500:CDS | 50.0% |
| CATTGGAAAGCGGAGTGTGT+TGG | + | tig0025559:54843-54862 | Msa1423500:intergenic | 50.0% | |
| CAACACACTCCGCTTTCCAA+TGG | - | tig0025559:54841-54860 | Msa1423500:intron | 50.0% | |
| ! | GTCCCCTATAGTCTTGGCTA+AGG | - | tig0025559:54953-54972 | Msa1423500:intron | 50.0% |
| ! | CCCTATAGTCTTGGCTAAGG+TGG | - | tig0025559:54956-54975 | Msa1423500:intron | 50.0% |
| GCCACCTTAGCCAAGACTAT+AGG | + | tig0025559:54960-54979 | Msa1423500:intergenic | 50.0% | |
| !! | ACTCGTACACAGGTGCCATT+TGG | + | tig0025559:55593-55612 | Msa1423500:intergenic | 50.0% |
| GTAATGCTCTCCTGTGTGTC+GGG | + | tig0025559:56037-56056 | Msa1423500:intergenic | 50.0% | |
| ! | AGATTGGCCCAAGTTCGTGA+AGG | - | tig0025559:56141-56160 | Msa1423500:intron | 50.0% |
| TCCTCCCAATCGTCTCTTTG+TGG | - | tig0025559:56210-56229 | Msa1423500:intron | 50.0% | |
| TCCACAAAGAGACGATTGGG+AGG | + | tig0025559:56214-56233 | Msa1423500:intergenic | 50.0% | |
| TCCCAATCGTCTCTTTGTGG+AGG | - | tig0025559:56213-56232 | Msa1423500:intron | 50.0% | |
| ATTTCAGGAACATGTGCCGG+CGG | - | tig0025559:54256-54275 | Msa1423500:CDS | 50.0% | |
| !! | ACATGTGCCGGCGGATTTTA+TGG | - | tig0025559:54265-54284 | Msa1423500:CDS | 50.0% |
| CATTGGAAAGCGGAGTGTGT+TGG | + | tig0025559:54843-54862 | Msa1423500:intergenic | 50.0% | |
| CAACACACTCCGCTTTCCAA+TGG | - | tig0025559:54841-54860 | Msa1423500:intron | 50.0% | |
| ! | GTCCCCTATAGTCTTGGCTA+AGG | - | tig0025559:54953-54972 | Msa1423500:intron | 50.0% |
| ! | CCCTATAGTCTTGGCTAAGG+TGG | - | tig0025559:54956-54975 | Msa1423500:intron | 50.0% |
| GCCACCTTAGCCAAGACTAT+AGG | + | tig0025559:54960-54979 | Msa1423500:intergenic | 50.0% | |
| !! | ACTCGTACACAGGTGCCATT+TGG | + | tig0025559:55593-55612 | Msa1423500:intergenic | 50.0% |
| GTAATGCTCTCCTGTGTGTC+GGG | + | tig0025559:56037-56056 | Msa1423500:intergenic | 50.0% | |
| ! | AGATTGGCCCAAGTTCGTGA+AGG | - | tig0025559:56141-56160 | Msa1423500:intron | 50.0% |
| TCCTCCCAATCGTCTCTTTG+TGG | - | tig0025559:56210-56229 | Msa1423500:intron | 50.0% | |
| TCCACAAAGAGACGATTGGG+AGG | + | tig0025559:56214-56233 | Msa1423500:intergenic | 50.0% | |
| TCCCAATCGTCTCTTTGTGG+AGG | - | tig0025559:56213-56232 | Msa1423500:intron | 50.0% | |
| CAACTGCTTACCCGACACAC+AGG | - | tig0025559:56024-56043 | Msa1423500:intron | 55.0% | |
| CAACTGCTTACCCGACACAC+AGG | - | tig0025559:56024-56043 | Msa1423500:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025559 | gene | 54218 | 56255 | 54218 | ID=Msa1423500;Name=Msa1423500 |
| tig0025559 | mRNA | 54218 | 56255 | 54218 | ID=Msa1423500-mRNA-1;Parent=Msa1423500;Name=Msa1423500-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|0.16|1|1|6|0|202 |
| tig0025559 | exon | 56252 | 56255 | 56252 | ID=Msa1423500-mRNA-1:exon:3262;Parent=Msa1423500-mRNA-1 |
| tig0025559 | exon | 56156 | 56210 | 56156 | ID=Msa1423500-mRNA-1:exon:3261;Parent=Msa1423500-mRNA-1 |
| tig0025559 | exon | 55079 | 55145 | 55079 | ID=Msa1423500-mRNA-1:exon:3260;Parent=Msa1423500-mRNA-1 |
| tig0025559 | exon | 54909 | 54964 | 54909 | ID=Msa1423500-mRNA-1:exon:3259;Parent=Msa1423500-mRNA-1 |
| tig0025559 | exon | 54572 | 54743 | 54572 | ID=Msa1423500-mRNA-1:exon:3258;Parent=Msa1423500-mRNA-1 |
| tig0025559 | exon | 54218 | 54472 | 54218 | ID=Msa1423500-mRNA-1:exon:3257;Parent=Msa1423500-mRNA-1 |
| tig0025559 | CDS | 56252 | 56255 | 56252 | ID=Msa1423500-mRNA-1:cds;Parent=Msa1423500-mRNA-1 |
| tig0025559 | CDS | 56156 | 56210 | 56156 | ID=Msa1423500-mRNA-1:cds;Parent=Msa1423500-mRNA-1 |
| tig0025559 | CDS | 55079 | 55145 | 55079 | ID=Msa1423500-mRNA-1:cds;Parent=Msa1423500-mRNA-1 |
| tig0025559 | CDS | 54909 | 54964 | 54909 | ID=Msa1423500-mRNA-1:cds;Parent=Msa1423500-mRNA-1 |
| tig0025559 | CDS | 54572 | 54743 | 54572 | ID=Msa1423500-mRNA-1:cds;Parent=Msa1423500-mRNA-1 |
| tig0025559 | CDS | 54218 | 54472 | 54218 | ID=Msa1423500-mRNA-1:cds;Parent=Msa1423500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
