AlfalfaGEDB | Msa1424800

M. sativa cultivar zhongmu-4 / Msa1424800

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1424800	sp\|Q9SZL8\|FRS5_ARATH	37.057	367	220	3	57	419	70	429	1.24e-73	248

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1424800	A0A2Z6LXR1	67.358	386	120	4	37	419	12	394	0.0	548

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1424800	TF	FAR1

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1424800	MtrunA17_Chr5g0448761	36.605	377	224	6	57	425	57	426	3.83e-71	239
Msa1424800	MtrunA17_Chr8g0363841	35.106	376	229	6	49	419	5	370	1.41e-70	235
Msa1424800	MtrunA17_Chr1g0202341	34.901	404	243	7	31	427	22	412	1.79e-67	227
Msa1424800	MtrunA17_Chr2g0287651	33.333	360	228	4	66	423	81	430	2.03e-67	230
Msa1424800	MtrunA17_Chr2g0296781	36.798	356	210	6	66	419	3	345	1.52e-66	225
Msa1424800	MtrunA17_Chr5g0441581	34.474	380	220	8	51	423	20	377	2.67e-66	224
Msa1424800	MtrunA17_Chr2g0324011	34.146	369	229	4	55	419	5	363	1.23e-64	218
Msa1424800	MtrunA17_Chr1g0203051	32.768	354	226	4	75	427	94	436	5.36e-59	203
Msa1424800	MtrunA17_Chr6g0458391	32.133	361	220	5	60	419	225	561	5.75e-59	205
Msa1424800	MtrunA17_Chr1g0207551	32.880	368	233	5	55	419	29	385	3.97e-58	204

Showing 1 to 10 of 34 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1424800	AT4G38180.1	37.057	367	220	3	57	419	70	429	1.26e-74	248
Msa1424800	AT4G15090.1	33.858	381	231	7	55	427	46	413	4.80e-60	209
Msa1424800	AT4G15090.5	33.858	381	231	7	55	427	46	413	4.80e-60	209
Msa1424800	AT4G15090.3	33.858	381	231	7	55	427	46	413	4.80e-60	209
Msa1424800	AT4G15090.2	33.858	381	231	7	55	427	46	413	4.80e-60	209
Msa1424800	AT4G15090.4	33.858	381	231	7	55	427	46	413	4.80e-60	209
Msa1424800	AT2G27110.2	30.959	365	220	4	59	423	48	380	2.15e-53	191
Msa1424800	AT2G27110.1	30.959	365	220	4	59	423	48	380	2.15e-53	191
Msa1424800	AT3G22170.2	30.105	382	228	6	58	427	68	422	5.01e-52	187
Msa1424800	AT3G22170.1	30.105	382	228	6	58	427	68	422	5.01e-52	187

Showing 1 to 10 of 49 entries

Previous1 2 3 4 5Next

Find 62 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACATGACTTGAAACTT+TGG	0.429007	tig0025793:-19426	None:intergenic
AAAGTTTCAAGTCATGTGTT+TGG	0.363379	tig0025793:+19428	Msa1424800:CDS
AAATGAGTTTGAAGAGACTT+GGG	0.582686	tig0025793:+19465	Msa1424800:CDS
AAGGGTGTCAGCATAACGGT+GGG	0.651526	tig0025793:+16786	Msa1424800:CDS
AAGTTTCAAGTCATGTGTTT+GGG	0.311339	tig0025793:+19429	Msa1424800:CDS
ACATTTCGTTTGCTCGAAAG+AGG	0.495450	tig0025793:+18538	Msa1424800:CDS
ACTTATTAAAAGAACAGTGT+GGG	0.551687	tig0025793:+18843	Msa1424800:CDS
AGAAAGGTGATTCATTTGTA+TGG	0.456233	tig0025793:+19212	Msa1424800:CDS
AGAAGGGCTTTAACAAGAGA+AGG	0.550276	tig0025793:+18623	Msa1424800:CDS
AGCATAACGGTGGGTGGGAG+TGG	0.410216	tig0025793:+16795	Msa1424800:CDS

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CACACCTTAATAAAAACTAG+TGG	-	tig0025793:16965-16984	None:intergenic	30.0%
TACACCTTAAGGATTTATGT+GGG	+	tig0025793:17331-17350	Msa1424800:intron	30.0%
AGTAATGAGAAGAAGATAGA+AGG	-	tig0025793:17617-17636	None:intergenic	30.0%
GTTACATTCAGCATTCTTTA+TGG	+	tig0025793:17713-17732	Msa1424800:intron	30.0%
TCTTGTTCATTAATGTCTAC+AGG	-	tig0025793:17976-17995	None:intergenic	30.0%
TCTCTAATATGCAGAAAGAT+TGG	-	tig0025793:18023-18042	None:intergenic	30.0%
GATGAATTAAAGCCTAAGAT+TGG	+	tig0025793:18395-18414	Msa1424800:CDS	30.0%
TCAAATACTTGTCCAATCTT+AGG	-	tig0025793:18410-18429	None:intergenic	30.0%
AGTTCACAAAAGCTTATTAC+AGG	+	tig0025793:18781-18800	Msa1424800:CDS	30.0%
CACTTATTAAAAGAACAGTG+TGG	+	tig0025793:18842-18861	Msa1424800:CDS	30.0%

Showing 1 to 10 of 183 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
tig0025793	gene	16780	19522	16780	ID=Msa1424800;Name=Msa1424800
tig0025793	mRNA	16780	19522	16780	ID=Msa1424800-mRNA-1;Parent=Msa1424800;Name=Msa1424800-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|0\|0\|0.66\|1\|1\|3\|0\|430
tig0025793	exon	16780	16870	16780	ID=Msa1424800-mRNA-1:exon:4023;Parent=Msa1424800-mRNA-1
tig0025793	exon	17724	17770	17724	ID=Msa1424800-mRNA-1:exon:4024;Parent=Msa1424800-mRNA-1
tig0025793	exon	18368	19522	18368	ID=Msa1424800-mRNA-1:exon:4025;Parent=Msa1424800-mRNA-1
tig0025793	CDS	16780	16870	16780	ID=Msa1424800-mRNA-1:cds;Parent=Msa1424800-mRNA-1
tig0025793	CDS	17724	17770	17724	ID=Msa1424800-mRNA-1:cds;Parent=Msa1424800-mRNA-1
tig0025793	CDS	18368	19522	18368	ID=Msa1424800-mRNA-1:cds;Parent=Msa1424800-mRNA-1

Gene Sequence

>Msa1424800

ATGGTGAAGGGTGTCAGCATAACGGTGGGTGGGAGTGGGATTAAAGCTCTGCTGCGTGGTTTTTGGATCAACGAAGATGAGAAGCTGAACACATTCTTTATGGACAAAGATACATCAACTAGTTTTCAAATTCCTCAGGAATATGAATGTGTGCCAAATTGCGATGATGAATTAAAGCCTAAGATTGGACAAGTATTTGATACGTTGGCAGAAGGTAAAAAATTTTACGAAAAATACGCAGTCTCTGTCGGATTTAGTGTGCGTTCATCATCATCGACTATAGATAAAAACGGCGTGAAGCGTTGGAAACATTTCGTTTGCTCGAAAGAGGGTTATTTGCCAAATAAGACGGATGATAAGGAGCAAAGTGAATCTACTGTCAAGGTTAGAAGAAGAAGGGCTTTAACAAGAGAAGGATGCAATGCAAATGTTGTTTTCAAATGGGTGGGGGAAGGTAAGTATGAGATAGCTCGATTTCATGAAAGCCATACACATCCACTTGCTTCACCTATGAAGAGACCGTTTCTAAGGTCTGCAAGGAAAGTGAATTTAGTTCACAAAAGCTTATTACAGGCATGTAGTAGAGCAAATATTAGAACTTCAAAAACCTTCCACTTATTAAAAGAACAGTGTGGGGGTTATGAAAATGTTGGATGCACGCAGAGAGATCTTCAAAACTATTCCAGAGATTTAAAGACTTTGAATAAAAATTCTGATGCACATGTTTTGATAGATTACTTTAGAAGGAAGCAAGAAGTTAATCCATCCTTTTATTATGCGTATGAGGTAGGTGAAGAAGACCGACTGAAGCATGTTTTTTGGGCAGATGGTACTTGTAGGAAAAATTATTCCTTATTTGGGGATGTGGTTTCATTTGATACTACATATCAAACAAATAAATATCATTTGATTTTTGCACCTTTCACCGGGATAAACCATCATCGACAATCTATTACCTTTGGCGTAGGACTTATAACAAATGAGAAAGGTGATTCATTTGTATGGTTGTTTGAAAAGTTTTTGGAAGCAATGGGTGGACATAAGCCAACTCTTATAATAACCGATCAAGATCCTTCCATGAAAGTGGCTATAGAAAATATTTTTGATACTTCTACTCATAGATTGTGCATGTGGCATATCATGAAAAAAGTTTCTGAAAAAGTAGGTGTTTCCATGAATGATGAGGACGAGTTCAACCAAAGTTTCAAGTCATGTGTTTGGGGTTCAGAGACACCAAATGAGTTTGAAGAGACTTGGGCGTTTTTTGTTTTTAGGATTGGAACAATGACATAG

Protein sequence

>Msa1424800

MVKGVSITVGGSGIKALLRGFWINEDEKLNTFFMDKDTSTSFQIPQEYECVPNCDDELKPKIGQVFDTLAEGKKFYEKYAVSVGFSVRSSSSTIDKNGVKRWKHFVCSKEGYLPNKTDDKEQSESTVKVRRRRALTREGCNANVVFKWVGEGKYEIARFHESHTHPLASPMKRPFLRSARKVNLVHKSLLQACSRANIRTSKTFHLLKEQCGGYENVGCTQRDLQNYSRDLKTLNKNSDAHVLIDYFRRKQEVNPSFYYAYEVGEEDRLKHVFWADGTCRKNYSLFGDVVSFDTTYQTNKYHLIFAPFTGINHHRQSITFGVGLITNEKGDSFVWLFEKFLEAMGGHKPTLIITDQDPSMKVAIENIFDTSTHRLCMWHIMKKVSEKVGVSMNDEDEFNQSFKSCVWGSETPNEFEETWAFFVFRIGTMT*