AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1424800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1424800 MtrunA17_Chr5g0448761 36.605 377 224 6 57 425 57 426 3.83e-71 239
Msa1424800 MtrunA17_Chr8g0363841 35.106 376 229 6 49 419 5 370 1.41e-70 235
Msa1424800 MtrunA17_Chr1g0202341 34.901 404 243 7 31 427 22 412 1.79e-67 227
Msa1424800 MtrunA17_Chr2g0287651 33.333 360 228 4 66 423 81 430 2.03e-67 230
Msa1424800 MtrunA17_Chr2g0296781 36.798 356 210 6 66 419 3 345 1.52e-66 225
Msa1424800 MtrunA17_Chr5g0441581 34.474 380 220 8 51 423 20 377 2.67e-66 224
Msa1424800 MtrunA17_Chr2g0324011 34.146 369 229 4 55 419 5 363 1.23e-64 218
Msa1424800 MtrunA17_Chr1g0203051 32.768 354 226 4 75 427 94 436 5.36e-59 203
Msa1424800 MtrunA17_Chr6g0458391 32.133 361 220 5 60 419 225 561 5.75e-59 205
Msa1424800 MtrunA17_Chr1g0207551 32.880 368 233 5 55 419 29 385 3.97e-58 204
Msa1424800 MtrunA17_Chr6g0477261 42.308 234 133 2 187 419 2 234 2.77e-57 199
Msa1424800 MtrunA17_Chr3g0080351 30.133 375 226 5 55 419 71 419 3.13e-55 196
Msa1424800 MtrunA17_Chr3g0082121 31.967 366 232 6 60 423 43 393 6.95e-55 193
Msa1424800 MtrunA17_Chr5g0440451 30.000 380 227 5 59 419 42 401 3.36e-53 191
Msa1424800 MtrunA17_Chr1g0203721 28.415 366 251 4 62 423 65 423 1.01e-51 186
Msa1424800 MtrunA17_Chr2g0329031 30.579 363 231 8 66 425 20 364 1.51e-50 182
Msa1424800 MtrunA17_Chr7g0258861 35.739 291 172 5 59 343 9 290 2.04e-50 172
Msa1424800 MtrunA17_Chr1g0196541 31.129 363 229 7 66 423 3 349 8.27e-50 179
Msa1424800 MtrunA17_Chr2g0287061 31.903 373 204 10 58 427 181 506 1.78e-49 179
Msa1424800 MtrunA17_Chr2g0291591 27.568 370 247 7 55 419 59 412 2.93e-48 173
Msa1424800 MtrunA17_Chr5g0431001 30.788 406 255 11 38 427 38 433 2.94e-48 172
Msa1424800 MtrunA17_Chr5g0448511 41.579 190 111 0 240 429 13 202 2.01e-47 171
Msa1424800 MtrunA17_Chr1g0164591 33.955 268 169 3 152 419 10 269 4.24e-47 164
Msa1424800 MtrunA17_Chr2g0291581 28.841 371 237 7 60 426 71 418 4.29e-46 169
Msa1424800 MtrunA17_Chr1g0198761 28.418 373 248 7 63 423 50 415 3.39e-45 167
Msa1424800 MtrunA17_Chr3g0118611 39.894 188 111 1 232 419 113 298 8.09e-44 163
Msa1424800 MtrunA17_Chr2g0294841 26.555 418 286 9 22 427 7 415 2.28e-40 153
Msa1424800 MtrunA17_Chr2g0276841 27.105 380 253 8 60 427 70 437 1.75e-38 147
Msa1424800 MtrunA17_Chr2g0290391 26.406 409 273 10 37 427 28 426 3.25e-36 140
Msa1424800 MtrunA17_Chr4g0033611 37.302 126 67 4 44 167 61 176 2.94e-17 81.3
Msa1424800 MtrunA17_Chr2g0329421 34.559 136 78 3 34 167 1 127 1.17e-14 72.8
Msa1424800 MtrunA17_Chr6g0451441 30.000 180 111 4 51 227 75 242 1.42e-14 75.5
Msa1424800 MtrunA17_Chr7g0233911 36.522 115 60 4 59 169 33 138 6.72e-13 67.8
Msa1424800 MtrunA17_Chr2g0329361 32.812 128 80 2 56 182 57 179 8.89e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1424800 AT4G38180.1 37.057 367 220 3 57 419 70 429 1.26e-74 248
Msa1424800 AT4G15090.1 33.858 381 231 7 55 427 46 413 4.80e-60 209
Msa1424800 AT4G15090.5 33.858 381 231 7 55 427 46 413 4.80e-60 209
Msa1424800 AT4G15090.3 33.858 381 231 7 55 427 46 413 4.80e-60 209
Msa1424800 AT4G15090.2 33.858 381 231 7 55 427 46 413 4.80e-60 209
Msa1424800 AT4G15090.4 33.858 381 231 7 55 427 46 413 4.80e-60 209
Msa1424800 AT2G27110.2 30.959 365 220 4 59 423 48 380 2.15e-53 191
Msa1424800 AT2G27110.1 30.959 365 220 4 59 423 48 380 2.15e-53 191
Msa1424800 AT3G22170.2 30.105 382 228 6 58 427 68 422 5.01e-52 187
Msa1424800 AT3G22170.1 30.105 382 228 6 58 427 68 422 5.01e-52 187
Msa1424800 AT1G76320.3 29.296 355 235 6 66 419 3 342 9.16e-46 168
Msa1424800 AT1G76320.1 29.296 355 235 6 66 419 3 342 1.68e-45 168
Msa1424800 AT1G76320.4 29.296 355 235 6 66 419 3 342 1.68e-45 168
Msa1424800 AT1G76320.2 29.296 355 235 6 66 419 3 342 1.76e-45 168
Msa1424800 AT2G27110.3 40.110 182 109 0 239 420 51 232 7.89e-45 166
Msa1424800 AT1G80010.1 27.660 376 252 5 60 427 95 458 9.18e-45 166
Msa1424800 AT3G06250.2 28.989 376 206 7 59 427 189 510 1.01e-44 166
Msa1424800 AT3G06250.1 28.989 376 206 7 59 427 189 510 1.01e-44 166
Msa1424800 AT3G06250.3 28.989 376 206 7 59 427 189 510 1.01e-44 166
Msa1424800 AT1G52520.1 28.117 377 238 10 60 429 85 435 1.91e-44 165
Msa1424800 AT5G28530.3 27.251 411 275 9 35 429 30 432 2.86e-39 150
Msa1424800 AT5G28530.2 27.251 411 275 9 35 429 30 432 2.86e-39 150
Msa1424800 AT5G28530.1 27.251 411 275 9 35 429 30 432 3.29e-39 150
Msa1424800 AT5G18960.2 27.513 378 212 11 59 427 210 534 4.43e-39 150
Msa1424800 AT5G18960.1 27.513 378 212 11 59 427 210 534 4.43e-39 150
Msa1424800 AT4G38170.1 41.935 186 102 3 241 425 20 200 9.23e-39 147
Msa1424800 AT2G32250.2 27.273 374 222 5 51 423 29 353 1.91e-38 148
Msa1424800 AT2G32250.4 27.273 374 222 5 51 423 29 353 1.91e-38 148
Msa1424800 AT2G32250.5 27.493 371 219 5 51 420 29 350 2.16e-38 148
Msa1424800 AT2G32250.6 27.493 371 219 5 51 420 29 350 2.23e-38 148
Msa1424800 AT2G32250.1 27.493 371 219 5 51 420 29 350 2.23e-38 148
Msa1424800 AT2G32250.3 27.493 371 219 5 51 420 29 350 2.23e-38 148
Msa1424800 AT2G32250.7 27.809 356 207 5 66 420 3 309 6.07e-38 146
Msa1424800 AT2G32250.8 27.809 356 207 5 66 420 3 309 6.76e-38 146
Msa1424800 AT1G10240.2 27.979 386 248 10 60 430 48 418 2.13e-37 144
Msa1424800 AT1G10240.1 27.979 386 248 10 60 430 48 418 2.13e-37 144
Msa1424800 AT4G19990.7 26.975 367 221 7 63 419 38 367 6.02e-35 138
Msa1424800 AT4G19990.5 26.975 367 221 7 63 419 24 353 6.04e-35 138
Msa1424800 AT4G19990.3 26.975 367 221 7 63 419 24 353 7.11e-35 137
Msa1424800 AT4G19990.4 26.975 367 221 7 63 419 24 353 7.11e-35 137
Msa1424800 AT4G19990.6 26.975 367 221 7 63 419 24 353 1.23e-34 137
Msa1424800 AT4G19990.2 26.975 367 221 7 63 419 24 353 1.23e-34 137
Msa1424800 AT4G19990.1 35.676 185 118 1 236 419 112 296 5.07e-33 132
Msa1424800 AT5G28530.5 22.943 401 242 11 35 429 30 369 2.16e-18 88.2
Msa1424800 AT5G28530.4 22.943 401 242 11 35 429 30 369 2.75e-18 87.8
Msa1424800 AT3G59470.3 38.739 111 57 3 59 167 69 170 1.56e-13 70.5
Msa1424800 AT3G59470.1 38.739 111 57 3 59 167 69 170 1.56e-13 70.5
Msa1424800 AT3G59470.2 38.739 111 57 3 59 167 81 182 1.81e-13 70.9
Msa1424800 AT3G07500.1 32.432 111 67 2 58 167 31 134 2.75e-12 66.2

Find 62 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACATTCAGCATTCTTTA+TGG 0.148968 tig0025793:+17713 Msa1424800:intron
TCCTTATCATCCGTCTTATT+TGG 0.253463 tig0025793:-18569 None:intergenic
TTTAATTCATCATCGCAATT+TGG 0.259676 tig0025793:-18383 None:intergenic
TACCTCATACGCATAATAAA+AGG 0.300798 tig0025793:-18996 None:intergenic
TGAAACCACATCCCCAAATA+AGG 0.310942 tig0025793:-19080 None:intergenic
AAGTTTCAAGTCATGTGTTT+GGG 0.311339 tig0025793:+19429 Msa1424800:CDS
AGTTCACAAAAGCTTATTAC+AGG 0.312085 tig0025793:+18781 Msa1424800:CDS
TCAAATACTTGTCCAATCTT+AGG 0.341635 tig0025793:-18407 None:intergenic
ATTCAAAGTCTTTAAATCTC+TGG 0.356604 tig0025793:-18912 None:intergenic
AAAGTTTCAAGTCATGTGTT+TGG 0.363379 tig0025793:+19428 Msa1424800:CDS
CAAGTCTCTTCAAACTCATT+TGG 0.372368 tig0025793:-19463 None:intergenic
AGCATAACGGTGGGTGGGAG+TGG 0.410216 tig0025793:+16795 Msa1424800:CDS
CTTAGAAACGGTCTCTTCAT+AGG 0.411850 tig0025793:-18737 None:intergenic
TTTGGGCAGATGGTACTTGT+AGG 0.415697 tig0025793:+19047 Msa1424800:CDS
CTATGAAGAGACCGTTTCTA+AGG 0.416138 tig0025793:+18738 Msa1424800:CDS
CATCGACAATCTATTACCTT+TGG 0.423093 tig0025793:+19169 Msa1424800:CDS
AAACACATGACTTGAAACTT+TGG 0.429007 tig0025793:-19426 None:intergenic
TTATTCCTTATTTGGGGATG+TGG 0.431251 tig0025793:+19075 Msa1424800:CDS
CAAATGAGTTTGAAGAGACT+TGG 0.432734 tig0025793:+19464 Msa1424800:CDS
GATGAATTAAAGCCTAAGAT+TGG 0.441758 tig0025793:+18395 Msa1424800:CDS
GCCAAATAAGACGGATGATA+AGG 0.447708 tig0025793:+18568 Msa1424800:CDS
AGAAAGGTGATTCATTTGTA+TGG 0.456233 tig0025793:+19212 Msa1424800:CDS
GAACTCGTCCTCATCATTCA+TGG 0.466660 tig0025793:-19401 None:intergenic
TGATCGGTTATTATAAGAGT+TGG 0.470629 tig0025793:-19274 None:intergenic
CTGTCAAGGTTAGAAGAAGA+AGG 0.491761 tig0025793:+18606 Msa1424800:CDS
ACATTTCGTTTGCTCGAAAG+AGG 0.495450 tig0025793:+18538 Msa1424800:CDS
AGGTAATAGATTGTCGATGA+TGG 0.498326 tig0025793:-19165 None:intergenic
TTCCTTGCAGACCTTAGAAA+CGG 0.510667 tig0025793:-18749 None:intergenic
GCATAACGGTGGGTGGGAGT+GGG 0.516929 tig0025793:+16796 Msa1424800:CDS
TCTATAGCCACTTTCATGGA+AGG 0.520478 tig0025793:-19301 None:intergenic
TCAAGATCCTTCCATGAAAG+TGG 0.522014 tig0025793:+19294 Msa1424800:CDS
GGTGTCAGCATAACGGTGGG+TGG 0.522916 tig0025793:+16789 Msa1424800:CDS
AGAAGGGCTTTAACAAGAGA+AGG 0.550276 tig0025793:+18623 Msa1424800:CDS
ACTTATTAAAAGAACAGTGT+GGG 0.551687 tig0025793:+18843 Msa1424800:CDS
TTTCATGGAAGGATCTTGAT+CGG 0.556444 tig0025793:-19290 None:intergenic
GGACTTATAACAAATGAGAA+AGG 0.557049 tig0025793:+19196 Msa1424800:CDS
GTGTCAGCATAACGGTGGGT+GGG 0.561544 tig0025793:+16790 Msa1424800:CDS
GGGTTATTTGCCAAATAAGA+CGG 0.573634 tig0025793:+18559 Msa1424800:CDS
TGGACAAGTATTTGATACGT+TGG 0.575442 tig0025793:+18415 Msa1424800:CDS
TGATGGTTTATCCCGGTGAA+AGG 0.578866 tig0025793:-19148 None:intergenic
TGTTATAAGTCCTACGCCAA+AGG 0.582545 tig0025793:-19185 None:intergenic
AAATGAGTTTGAAGAGACTT+GGG 0.582686 tig0025793:+19465 Msa1424800:CDS
GTGAAGCAAGTGGATGTGTA+TGG 0.586364 tig0025793:-18715 None:intergenic
CTTATTAAAAGAACAGTGTG+GGG 0.593050 tig0025793:+18844 Msa1424800:CDS
TTGTCGATGATGGTTTATCC+CGG 0.594835 tig0025793:-19155 None:intergenic
GCAAAGTGAATCTACTGTCA+AGG 0.595204 tig0025793:+18592 Msa1424800:CDS
GTATTTGATACGTTGGCAGA+AGG 0.595265 tig0025793:+18422 Msa1424800:CDS
CAATCTATTACCTTTGGCGT+AGG 0.596059 tig0025793:+19175 Msa1424800:CDS
TGTCAAGGTTAGAAGAAGAA+GGG 0.596214 tig0025793:+18607 Msa1424800:CDS
CATTTCGTTTGCTCGAAAGA+GGG 0.599887 tig0025793:+18539 Msa1424800:CDS
GACCGTTTCTAAGGTCTGCA+AGG 0.602665 tig0025793:+18747 Msa1424800:CDS
CTACTCATAGATTGTGCATG+TGG 0.604136 tig0025793:+19341 Msa1424800:CDS
TCATACGCATAATAAAAGGA+TGG 0.619753 tig0025793:-18992 None:intergenic
CACTTATTAAAAGAACAGTG+TGG 0.629235 tig0025793:+18842 Msa1424800:CDS
AGTTTCAAGTCATGTGTTTG+GGG 0.635288 tig0025793:+19430 Msa1424800:CDS
CTCTTCATAGGTGAAGCAAG+TGG 0.639442 tig0025793:-18725 None:intergenic
GGGATTAAAGCTCTGCTGCG+TGG 0.640639 tig0025793:+16816 Msa1424800:CDS
AAGGGTGTCAGCATAACGGT+GGG 0.651526 tig0025793:+16786 Msa1424800:CDS
GAAGGGTGTCAGCATAACGG+TGG 0.652728 tig0025793:+16785 Msa1424800:CDS
AGGTGTTTCCATGAATGATG+AGG 0.654152 tig0025793:+19393 Msa1424800:CDS
GGTGAAGGGTGTCAGCATAA+CGG 0.668472 tig0025793:+16782 Msa1424800:CDS
TTATTAAAAGAACAGTGTGG+GGG 0.706691 tig0025793:+18845 Msa1424800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + tig0025793:16872-16891 Msa1424800:intron 0.0%
!! ATATATATATATATATATAT+GGG + tig0025793:16873-16892 Msa1424800:intron 0.0%
!! ATATATATATATATATATAT+GGG - tig0025793:16873-16892 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - tig0025793:16872-16891 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + tig0025793:16873-16892 Msa1424800:intron 0.0%
!! TATATATATATATATATATA+GGG + tig0025793:16872-16891 Msa1424800:intron 0.0%
!! TATATATATATATATATATA+GGG - tig0025793:16872-16891 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - tig0025793:16873-16892 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + tig0025793:16873-16892 Msa1424800:intron 0.0%
!! TATATATATATATATATATA+GGG + tig0025793:16872-16891 Msa1424800:intron 0.0%
!! ACATATATTAATATATAAAG+TGG - tig0025793:17930-17949 None:intergenic 10.0%
!! TCTTCAATAAAATAATATAA+AGG - tig0025793:18327-18346 None:intergenic 10.0%
!! AAACAATTATAATATACCTG+AGG - tig0025793:17768-17787 None:intergenic 20.0%
!! AAAAAAAACAACTATCTCTT+AGG - tig0025793:17807-17826 None:intergenic 20.0%
!!! TTTTTTCCCTAATTTTTTGT+TGG + tig0025793:17821-17840 Msa1424800:intron 20.0%
!! ATAGAACCAACAAAAAATTA+GGG - tig0025793:17830-17849 None:intergenic 20.0%
!! AATAGAACCAACAAAAAATT+AGG - tig0025793:17831-17850 None:intergenic 20.0%
!!! TTATGTTTTGTTCTTTTTTG+AGG + tig0025793:17904-17923 Msa1424800:intron 20.0%
!!! TATATACATGATTAGTTCAA+GGG - tig0025793:18054-18073 None:intergenic 20.0%
!!! ATATATACATGATTAGTTCA+AGG - tig0025793:18055-18074 None:intergenic 20.0%
!! AGGATTAAACAAAGAATTAA+AGG - tig0025793:18286-18305 None:intergenic 20.0%
!! GGAAAACAGAATAAAAAAAA+AGG - tig0025793:18306-18325 None:intergenic 20.0%
!!! TTTTGATAGATTACTTTAGA+AGG + tig0025793:18954-18973 Msa1424800:CDS 20.0%
!! AGGAAAAATTATTCCTTATT+TGG + tig0025793:19067-19086 Msa1424800:CDS 20.0%
!!! GGAAAAATTATTCCTTATTT+GGG + tig0025793:19068-19087 Msa1424800:CDS 20.0%
!!! GAAAAATTATTCCTTATTTG+GGG + tig0025793:19069-19088 Msa1424800:CDS 20.0%
!!! AAAAAAGTTTCTGAAAAAGT+AGG + tig0025793:19373-19392 Msa1424800:CDS 20.0%
! ACACCTTAATAAAAACTAGT+GGG - tig0025793:16964-16983 None:intergenic 25.0%
! AAGTTGTTAAATACACCTTA+AGG + tig0025793:17007-17026 Msa1424800:intron 25.0%
!!! ACACTCACTTATTTTTTAGA+AGG - tig0025793:17052-17071 None:intergenic 25.0%
!! ACACCTTCTAAAAAATAAGT+GGG - tig0025793:17046-17065 None:intergenic 25.0%
! AAGTAGTTAAATACACCTTA+AGG + tig0025793:17153-17172 Msa1424800:intron 25.0%
!!! TTCAGATTGATATTTTTGGT+TGG - tig0025793:17669-17688 None:intergenic 25.0%
!! CCAATTCAGATTGATATTTT+TGG - tig0025793:17673-17692 None:intergenic 25.0%
! CCAAAAATATCAATCTGAAT+TGG + tig0025793:17670-17689 Msa1424800:intron 25.0%
! TTATTATCATTATGAGCACA+TGG + tig0025793:18147-18166 Msa1424800:intron 25.0%
!!! TAATGTTGACTTCTAATTTG+TGG + tig0025793:18203-18222 Msa1424800:intron 25.0%
! TTTAATTCATCATCGCAATT+TGG - tig0025793:18386-18405 None:intergenic 25.0%
!! TCATCGACTATAGATAAAAA+CGG + tig0025793:18500-18519 Msa1424800:CDS 25.0%
!!! ATGCAAATGTTGTTTTCAAA+TGG + tig0025793:18651-18670 Msa1424800:CDS 25.0%
!!! TGCAAATGTTGTTTTCAAAT+GGG + tig0025793:18652-18671 Msa1424800:CDS 25.0%
! ACTTATTAAAAGAACAGTGT+GGG + tig0025793:18843-18862 Msa1424800:CDS 25.0%
! ATTCAAAGTCTTTAAATCTC+TGG - tig0025793:18915-18934 None:intergenic 25.0%
!! ATGGTTGTTTGAAAAGTTTT+TGG + tig0025793:19231-19250 Msa1424800:CDS 25.0%
! ATATATATATGGGGTTTGCT+AGG + tig0025793:16933-16952 Msa1424800:intron 30.0%
!!! ACACCCACTAGTTTTTATTA+AGG + tig0025793:16958-16977 Msa1424800:intron 30.0%
CACACCTTAATAAAAACTAG+TGG - tig0025793:16965-16984 None:intergenic 30.0%
! TTTTAGCAACATTCACCTTA+AGG - tig0025793:17025-17044 None:intergenic 30.0%
!!! ACACCCACTTATTTTTTAGA+AGG + tig0025793:17105-17124 Msa1424800:intron 30.0%
! CACACCTTCTAAAAAATAAG+TGG - tig0025793:17045-17064 None:intergenic 30.0%
TACACCTTAAGGATTTATGT+GGG + tig0025793:17331-17350 Msa1424800:intron 30.0%
! AGAGGAGTTTTTAAATGAGA+GGG + tig0025793:17464-17483 Msa1424800:intron 30.0%
AGTAATGAGAAGAAGATAGA+AGG - tig0025793:17617-17636 None:intergenic 30.0%
!!! AGATTGATATTTTTGGTTGG+AGG - tig0025793:17666-17685 None:intergenic 30.0%
GTTACATTCAGCATTCTTTA+TGG + tig0025793:17713-17732 Msa1424800:intron 30.0%
!!! AACTAGTTTTCAAATTCCTC+AGG + tig0025793:17749-17768 Msa1424800:CDS 30.0%
TCTTGTTCATTAATGTCTAC+AGG - tig0025793:17976-17995 None:intergenic 30.0%
TCTCTAATATGCAGAAAGAT+TGG - tig0025793:18023-18042 None:intergenic 30.0%
!! ATGAGATTGACTTTCACTTT+TGG - tig0025793:18095-18114 None:intergenic 30.0%
!!! TTTTTAAGATTGTTGTCCAG+TGG + tig0025793:18250-18269 Msa1424800:intron 30.0%
GATGAATTAAAGCCTAAGAT+TGG + tig0025793:18395-18414 Msa1424800:CDS 30.0%
TCAAATACTTGTCCAATCTT+AGG - tig0025793:18410-18429 None:intergenic 30.0%
!!! AAATGTTGTTTTCAAATGGG+TGG + tig0025793:18655-18674 Msa1424800:CDS 30.0%
!!! AATGTTGTTTTCAAATGGGT+GGG + tig0025793:18656-18675 Msa1424800:CDS 30.0%
AGTTCACAAAAGCTTATTAC+AGG + tig0025793:18781-18800 Msa1424800:CDS 30.0%
! CTGTTCTTTTAATAAGTGGA+AGG - tig0025793:18840-18859 None:intergenic 30.0%
! CACACTGTTCTTTTAATAAG+TGG - tig0025793:18844-18863 None:intergenic 30.0%
CACTTATTAAAAGAACAGTG+TGG + tig0025793:18842-18861 Msa1424800:CDS 30.0%
CTTATTAAAAGAACAGTGTG+GGG + tig0025793:18844-18863 Msa1424800:CDS 30.0%
TTATTAAAAGAACAGTGTGG+GGG + tig0025793:18845-18864 Msa1424800:CDS 30.0%
TCATACGCATAATAAAAGGA+TGG - tig0025793:18995-19014 None:intergenic 30.0%
! ATCCTTTTATTATGCGTATG+AGG + tig0025793:18994-19013 Msa1424800:CDS 30.0%
TACCTCATACGCATAATAAA+AGG - tig0025793:18999-19018 None:intergenic 30.0%
! TTTTATTATGCGTATGAGGT+AGG + tig0025793:18998-19017 Msa1424800:CDS 30.0%
GGACTTATAACAAATGAGAA+AGG + tig0025793:19196-19215 Msa1424800:CDS 30.0%
AGAAAGGTGATTCATTTGTA+TGG + tig0025793:19212-19231 Msa1424800:CDS 30.0%
!! TGAAAAGTTTTTGGAAGCAA+TGG + tig0025793:19240-19259 Msa1424800:CDS 30.0%
!! GAAAAGTTTTTGGAAGCAAT+GGG + tig0025793:19241-19260 Msa1424800:CDS 30.0%
TGATCGGTTATTATAAGAGT+TGG - tig0025793:19277-19296 None:intergenic 30.0%
!! ATTTTCTATAGCCACTTTCA+TGG - tig0025793:19308-19327 None:intergenic 30.0%
AAACACATGACTTGAAACTT+TGG - tig0025793:19429-19448 None:intergenic 30.0%
! AAAGTTTCAAGTCATGTGTT+TGG + tig0025793:19428-19447 Msa1424800:CDS 30.0%
! AAGTTTCAAGTCATGTGTTT+GGG + tig0025793:19429-19448 Msa1424800:CDS 30.0%
AAATGAGTTTGAAGAGACTT+GGG + tig0025793:19465-19484 Msa1424800:CDS 30.0%
!!! GCGTTTTTTGTTTTTAGGAT+TGG + tig0025793:19487-19506 Msa1424800:CDS 30.0%
TGTATGTTAGCAACTCCTAT+AGG + tig0025793:17069-17088 Msa1424800:intron 35.0%
! TTTTAGCAAGCTACACCTTA+AGG - tig0025793:17320-17339 None:intergenic 35.0%
ACTCCCACATAAAAACTAGT+GGG + tig0025793:17192-17211 Msa1424800:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - tig0025793:17293-17312 None:intergenic 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + tig0025793:17293-17312 Msa1424800:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG - tig0025793:17192-17211 None:intergenic 35.0%
! TTTTAGCAAGCTACACCTTA+AGG + tig0025793:17320-17339 Msa1424800:intron 35.0%
CTACACCTTAAGGATTTATG+TGG + tig0025793:17330-17349 Msa1424800:intron 35.0%
! GAGAGGAGTTTTTAAATGAG+AGG + tig0025793:17463-17482 Msa1424800:intron 35.0%
! TTTTTAAATGAGAGGGTGAG+AGG + tig0025793:17471-17490 Msa1424800:intron 35.0%
TGGCCATTGGATTAAATACA+TGG + tig0025793:17503-17522 Msa1424800:intron 35.0%
CAGCCATGTATTTAATCCAA+TGG - tig0025793:17509-17528 None:intergenic 35.0%
!! AACCAACGTGTTTCTGAAAT+TGG - tig0025793:17574-17593 None:intergenic 35.0%
!! TTGTTGGTTCTATTGTTGTC+CGG + tig0025793:17837-17856 Msa1424800:intron 35.0%
GTTCATTAATGTCTACAGGT+TGG - tig0025793:17972-17991 None:intergenic 35.0%
!! CACGAGATAAGTTTTATCGT+TGG - tig0025793:18175-18194 None:intergenic 35.0%
TGGACAAGTATTTGATACGT+TGG + tig0025793:18415-18434 Msa1424800:CDS 35.0%
GGGTTATTTGCCAAATAAGA+CGG + tig0025793:18559-18578 Msa1424800:CDS 35.0%
! TCCTTATCATCCGTCTTATT+TGG - tig0025793:18572-18591 None:intergenic 35.0%
TGTCAAGGTTAGAAGAAGAA+GGG + tig0025793:18607-18626 Msa1424800:CDS 35.0%
!!! ATGTTGTTTTCAAATGGGTG+GGG + tig0025793:18657-18676 Msa1424800:CDS 35.0%
! TTATTCCTTATTTGGGGATG+TGG + tig0025793:19075-19094 Msa1424800:CDS 35.0%
! TTGATTTTTGCACCTTTCAC+CGG + tig0025793:19136-19155 Msa1424800:CDS 35.0%
AGGTAATAGATTGTCGATGA+TGG - tig0025793:19168-19187 None:intergenic 35.0%
CATCGACAATCTATTACCTT+TGG + tig0025793:19169-19188 Msa1424800:CDS 35.0%
TTTCATGGAAGGATCTTGAT+CGG - tig0025793:19293-19312 None:intergenic 35.0%
! AGTTTCAAGTCATGTGTTTG+GGG + tig0025793:19430-19449 Msa1424800:CDS 35.0%
CAAGTCTCTTCAAACTCATT+TGG - tig0025793:19466-19485 None:intergenic 35.0%
CAAATGAGTTTGAAGAGACT+TGG + tig0025793:19464-19483 Msa1424800:CDS 35.0%
!!! CTTGGGCGTTTTTTGTTTTT+AGG + tig0025793:19482-19501 Msa1424800:CDS 35.0%
AACTCCTATAGGCATTTGCT+AGG + tig0025793:17080-17099 Msa1424800:intron 40.0%
GTATCCTAGCAAATGCCTAT+AGG - tig0025793:17087-17106 None:intergenic 40.0%
CACTCCCACATAAAAACTAG+TGG + tig0025793:17191-17210 Msa1424800:intron 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - tig0025793:17292-17311 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + tig0025793:17292-17311 Msa1424800:intron 40.0%
CACTCCCACATAAAAACTAG+TGG - tig0025793:17191-17210 None:intergenic 40.0%
CACTCCCACATAAATCCTTA+AGG - tig0025793:17338-17357 None:intergenic 40.0%
!! TAGGGAGTGTTTCAAATGAG+AGG + tig0025793:17446-17465 Msa1424800:intron 40.0%
CTCCAATTTCAGAAACACGT+TGG + tig0025793:17569-17588 Msa1424800:intron 40.0%
!!! TTTTTGGTTGGAGGTGAAGT+GGG - tig0025793:17657-17676 None:intergenic 40.0%
!!! ATTTTTGGTTGGAGGTGAAG+TGG - tig0025793:17658-17677 None:intergenic 40.0%
CAACAAGCAAATAGAACCAC+CGG - tig0025793:17859-17878 None:intergenic 40.0%
!!! TTTCACTTTTGGCTTCTCAC+TGG - tig0025793:18084-18103 None:intergenic 40.0%
TAAAGGATCATCAGAACCAC+TGG - tig0025793:18269-18288 None:intergenic 40.0%
GTATTTGATACGTTGGCAGA+AGG + tig0025793:18422-18441 Msa1424800:CDS 40.0%
GAAAAATACGCAGTCTCTGT+CGG + tig0025793:18458-18477 Msa1424800:CDS 40.0%
ACATTTCGTTTGCTCGAAAG+AGG + tig0025793:18538-18557 Msa1424800:CDS 40.0%
CATTTCGTTTGCTCGAAAGA+GGG + tig0025793:18539-18558 Msa1424800:CDS 40.0%
GCCAAATAAGACGGATGATA+AGG + tig0025793:18568-18587 Msa1424800:CDS 40.0%
GCAAAGTGAATCTACTGTCA+AGG + tig0025793:18592-18611 Msa1424800:CDS 40.0%
CTGTCAAGGTTAGAAGAAGA+AGG + tig0025793:18606-18625 Msa1424800:CDS 40.0%
! AGAAGGGCTTTAACAAGAGA+AGG + tig0025793:18623-18642 Msa1424800:CDS 40.0%
!!! TGTTGTTTTCAAATGGGTGG+GGG + tig0025793:18658-18677 Msa1424800:CDS 40.0%
CTTAGAAACGGTCTCTTCAT+AGG - tig0025793:18740-18759 None:intergenic 40.0%
CTATGAAGAGACCGTTTCTA+AGG + tig0025793:18738-18757 Msa1424800:CDS 40.0%
TTCCTTGCAGACCTTAGAAA+CGG - tig0025793:18752-18771 None:intergenic 40.0%
TGTGGGGGTTATGAAAATGT+TGG + tig0025793:18860-18879 Msa1424800:CDS 40.0%
!!! ACCGACTGAAGCATGTTTTT+TGG + tig0025793:19029-19048 Msa1424800:CDS 40.0%
CCCAAAAAACATGCTTCAGT+CGG - tig0025793:19033-19052 None:intergenic 40.0%
!!! CCGACTGAAGCATGTTTTTT+GGG + tig0025793:19030-19049 Msa1424800:CDS 40.0%
!!! AAGCATGTTTTTTGGGCAGA+TGG + tig0025793:19037-19056 Msa1424800:CDS 40.0%
TGAAACCACATCCCCAAATA+AGG - tig0025793:19083-19102 None:intergenic 40.0%
! TGATTTTTGCACCTTTCACC+GGG + tig0025793:19137-19156 Msa1424800:CDS 40.0%
! TTGTCGATGATGGTTTATCC+CGG - tig0025793:19158-19177 None:intergenic 40.0%
CAATCTATTACCTTTGGCGT+AGG + tig0025793:19175-19194 Msa1424800:CDS 40.0%
TGTTATAAGTCCTACGCCAA+AGG - tig0025793:19188-19207 None:intergenic 40.0%
!! AAGTTTTTGGAAGCAATGGG+TGG + tig0025793:19244-19263 Msa1424800:CDS 40.0%
TCAAGATCCTTCCATGAAAG+TGG + tig0025793:19294-19313 Msa1424800:CDS 40.0%
! TCTATAGCCACTTTCATGGA+AGG - tig0025793:19304-19323 None:intergenic 40.0%
CTACTCATAGATTGTGCATG+TGG + tig0025793:19341-19360 Msa1424800:CDS 40.0%
AGGTGTTTCCATGAATGATG+AGG + tig0025793:19393-19412 Msa1424800:CDS 40.0%
AGGGTGAGAGGACTAAACAT+TGG + tig0025793:17483-17502 Msa1424800:intron 45.0%
GAGGACTAAACATTGGCCAT+TGG + tig0025793:17490-17509 Msa1424800:intron 45.0%
!! TTGGTTCTATTGTTGTCCGG+TGG + tig0025793:17840-17859 Msa1424800:intron 45.0%
! CGGTGGTTCTATTTGCTTGT+TGG + tig0025793:17857-17876 Msa1424800:intron 45.0%
ATAAAAACGGCGTGAAGCGT+TGG + tig0025793:18513-18532 Msa1424800:CDS 45.0%
GTGAAGCAAGTGGATGTGTA+TGG - tig0025793:18718-18737 None:intergenic 45.0%
CTCTTCATAGGTGAAGCAAG+TGG - tig0025793:18728-18747 None:intergenic 45.0%
TTTGGGCAGATGGTACTTGT+AGG + tig0025793:19047-19066 Msa1424800:CDS 45.0%
TGATGGTTTATCCCGGTGAA+AGG - tig0025793:19151-19170 None:intergenic 45.0%
GAACTCGTCCTCATCATTCA+TGG - tig0025793:19404-19423 None:intergenic 45.0%
!! TATATATATATATATATATG+GGG + tig0025793:16924-16943 Msa1424800:intron 5.0%
!! TTTATATATTAATATATGTT+AGG + tig0025793:17931-17950 Msa1424800:intron 5.0%
!!! ATATTTATTTTGTTAATTTT+AGG + tig0025793:18346-18365 Msa1424800:intron 5.0%
!! GGTGAAGGGTGTCAGCATAA+CGG + tig0025793:16782-16801 Msa1424800:CDS 50.0%
!! AAGGGTGTCAGCATAACGGT+GGG + tig0025793:16786-16805 Msa1424800:CDS 50.0%
! AAGCTCTGCTGCGTGGTTTT+TGG + tig0025793:16823-16842 Msa1424800:CDS 50.0%
! GTTTTCAAATGGGTGGGGGA+AGG + tig0025793:18662-18681 Msa1424800:CDS 50.0%
!! GACCGTTTCTAAGGTCTGCA+AGG + tig0025793:18747-18766 Msa1424800:CDS 50.0%
!! GAAGGGTGTCAGCATAACGG+TGG + tig0025793:16785-16804 Msa1424800:CDS 55.0%
GTGTCAGCATAACGGTGGGT+GGG + tig0025793:16790-16809 Msa1424800:CDS 55.0%
GGGATTAAAGCTCTGCTGCG+TGG + tig0025793:16816-16835 Msa1424800:CDS 55.0%
GAAGTGGGAGGGAAGTGAGA+AGG - tig0025793:17642-17661 None:intergenic 55.0%
TGGTTGGAGGTGAAGTGGGA+GGG - tig0025793:17653-17672 None:intergenic 55.0%
TTGGTTGGAGGTGAAGTGGG+AGG - tig0025793:17654-17673 None:intergenic 55.0%
GGTGTCAGCATAACGGTGGG+TGG + tig0025793:16789-16808 Msa1424800:CDS 60.0%
AGCATAACGGTGGGTGGGAG+TGG + tig0025793:16795-16814 Msa1424800:CDS 60.0%
GCATAACGGTGGGTGGGAGT+GGG + tig0025793:16796-16815 Msa1424800:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0025793 gene 16780 19522 16780 ID=Msa1424800;Name=Msa1424800
tig0025793 mRNA 16780 19522 16780 ID=Msa1424800-mRNA-1;Parent=Msa1424800;Name=Msa1424800-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|0.66|1|1|3|0|430
tig0025793 exon 16780 16870 16780 ID=Msa1424800-mRNA-1:exon:4023;Parent=Msa1424800-mRNA-1
tig0025793 exon 17724 17770 17724 ID=Msa1424800-mRNA-1:exon:4024;Parent=Msa1424800-mRNA-1
tig0025793 exon 18368 19522 18368 ID=Msa1424800-mRNA-1:exon:4025;Parent=Msa1424800-mRNA-1
tig0025793 CDS 16780 16870 16780 ID=Msa1424800-mRNA-1:cds;Parent=Msa1424800-mRNA-1
tig0025793 CDS 17724 17770 17724 ID=Msa1424800-mRNA-1:cds;Parent=Msa1424800-mRNA-1
tig0025793 CDS 18368 19522 18368 ID=Msa1424800-mRNA-1:cds;Parent=Msa1424800-mRNA-1
Gene Sequence

>Msa1424800

ATGGTGAAGGGTGTCAGCATAACGGTGGGTGGGAGTGGGATTAAAGCTCTGCTGCGTGGTTTTTGGATCAACGAAGATGAGAAGCTGAACACATTCTTTATGGACAAAGATACATCAACTAGTTTTCAAATTCCTCAGGAATATGAATGTGTGCCAAATTGCGATGATGAATTAAAGCCTAAGATTGGACAAGTATTTGATACGTTGGCAGAAGGTAAAAAATTTTACGAAAAATACGCAGTCTCTGTCGGATTTAGTGTGCGTTCATCATCATCGACTATAGATAAAAACGGCGTGAAGCGTTGGAAACATTTCGTTTGCTCGAAAGAGGGTTATTTGCCAAATAAGACGGATGATAAGGAGCAAAGTGAATCTACTGTCAAGGTTAGAAGAAGAAGGGCTTTAACAAGAGAAGGATGCAATGCAAATGTTGTTTTCAAATGGGTGGGGGAAGGTAAGTATGAGATAGCTCGATTTCATGAAAGCCATACACATCCACTTGCTTCACCTATGAAGAGACCGTTTCTAAGGTCTGCAAGGAAAGTGAATTTAGTTCACAAAAGCTTATTACAGGCATGTAGTAGAGCAAATATTAGAACTTCAAAAACCTTCCACTTATTAAAAGAACAGTGTGGGGGTTATGAAAATGTTGGATGCACGCAGAGAGATCTTCAAAACTATTCCAGAGATTTAAAGACTTTGAATAAAAATTCTGATGCACATGTTTTGATAGATTACTTTAGAAGGAAGCAAGAAGTTAATCCATCCTTTTATTATGCGTATGAGGTAGGTGAAGAAGACCGACTGAAGCATGTTTTTTGGGCAGATGGTACTTGTAGGAAAAATTATTCCTTATTTGGGGATGTGGTTTCATTTGATACTACATATCAAACAAATAAATATCATTTGATTTTTGCACCTTTCACCGGGATAAACCATCATCGACAATCTATTACCTTTGGCGTAGGACTTATAACAAATGAGAAAGGTGATTCATTTGTATGGTTGTTTGAAAAGTTTTTGGAAGCAATGGGTGGACATAAGCCAACTCTTATAATAACCGATCAAGATCCTTCCATGAAAGTGGCTATAGAAAATATTTTTGATACTTCTACTCATAGATTGTGCATGTGGCATATCATGAAAAAAGTTTCTGAAAAAGTAGGTGTTTCCATGAATGATGAGGACGAGTTCAACCAAAGTTTCAAGTCATGTGTTTGGGGTTCAGAGACACCAAATGAGTTTGAAGAGACTTGGGCGTTTTTTGTTTTTAGGATTGGAACAATGACATAG

Protein sequence

>Msa1424800

MVKGVSITVGGSGIKALLRGFWINEDEKLNTFFMDKDTSTSFQIPQEYECVPNCDDELKPKIGQVFDTLAEGKKFYEKYAVSVGFSVRSSSSTIDKNGVKRWKHFVCSKEGYLPNKTDDKEQSESTVKVRRRRALTREGCNANVVFKWVGEGKYEIARFHESHTHPLASPMKRPFLRSARKVNLVHKSLLQACSRANIRTSKTFHLLKEQCGGYENVGCTQRDLQNYSRDLKTLNKNSDAHVLIDYFRRKQEVNPSFYYAYEVGEEDRLKHVFWADGTCRKNYSLFGDVVSFDTTYQTNKYHLIFAPFTGINHHRQSITFGVGLITNEKGDSFVWLFEKFLEAMGGHKPTLIITDQDPSMKVAIENIFDTSTHRLCMWHIMKKVSEKVGVSMNDEDEFNQSFKSCVWGSETPNEFEETWAFFVFRIGTMT*