Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424960 | MCH82909.1 | 71.218 | 271 | 77 | 1 | 18 | 288 | 4 | 273 | 2.32e-142 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424960 | sp|Q6NQJ7|FRS4_ARATH | 34.524 | 252 | 139 | 6 | 48 | 288 | 3 | 239 | 1.60e-38 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424960 | A0A392M6P6 | 71.218 | 271 | 77 | 1 | 18 | 288 | 4 | 273 | 1.11e-142 | 417 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1424960 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424960 | MtrunA17_Chr2g0296781 | 76.763 | 241 | 56 | 0 | 48 | 288 | 3 | 243 | 5.81e-137 | 404 |
| Msa1424960 | MtrunA17_Chr1g0196541 | 59.336 | 241 | 98 | 0 | 48 | 288 | 3 | 243 | 6.55e-102 | 314 |
| Msa1424960 | MtrunA17_Chr6g0477261 | 86.364 | 132 | 18 | 0 | 157 | 288 | 1 | 132 | 4.08e-79 | 253 |
| Msa1424960 | MtrunA17_Chr5g0441581 | 43.446 | 267 | 135 | 5 | 28 | 288 | 15 | 271 | 2.67e-60 | 204 |
| Msa1424960 | MtrunA17_Chr2g0291591 | 32.609 | 276 | 177 | 5 | 18 | 288 | 39 | 310 | 9.70e-42 | 151 |
| Msa1424960 | MtrunA17_Chr2g0329031 | 35.341 | 249 | 140 | 7 | 48 | 288 | 20 | 255 | 4.16e-40 | 149 |
| Msa1424960 | MtrunA17_Chr5g0448761 | 32.959 | 267 | 164 | 9 | 39 | 292 | 57 | 321 | 3.93e-36 | 137 |
| Msa1424960 | MtrunA17_Chr1g0202341 | 33.206 | 262 | 159 | 6 | 41 | 292 | 50 | 305 | 4.19e-35 | 134 |
| Msa1424960 | MtrunA17_Chr8g0363841 | 32.700 | 263 | 169 | 4 | 38 | 292 | 10 | 272 | 1.14e-34 | 133 |
| Msa1424960 | MtrunA17_Chr7g0258861 | 30.800 | 250 | 162 | 4 | 39 | 280 | 7 | 253 | 3.64e-34 | 126 |
| Msa1424960 | MtrunA17_Chr6g0476431 | 62.791 | 86 | 32 | 0 | 48 | 133 | 3 | 88 | 3.98e-34 | 120 |
| Msa1424960 | MtrunA17_Chr2g0291581 | 32.258 | 248 | 156 | 5 | 42 | 288 | 71 | 307 | 3.33e-33 | 129 |
| Msa1424960 | MtrunA17_Chr1g0207551 | 30.385 | 260 | 163 | 4 | 39 | 288 | 31 | 282 | 3.53e-33 | 129 |
| Msa1424960 | MtrunA17_Chr3g0080351 | 30.769 | 260 | 140 | 5 | 41 | 283 | 75 | 311 | 2.04e-31 | 124 |
| Msa1424960 | MtrunA17_Chr2g0324011 | 29.644 | 253 | 170 | 5 | 39 | 285 | 7 | 257 | 3.26e-29 | 117 |
| Msa1424960 | MtrunA17_Chr5g0440451 | 29.348 | 276 | 156 | 9 | 41 | 292 | 42 | 302 | 2.13e-26 | 109 |
| Msa1424960 | MtrunA17_Chr2g0287651 | 29.119 | 261 | 164 | 6 | 48 | 294 | 81 | 334 | 3.01e-26 | 108 |
| Msa1424960 | MtrunA17_Chr3g0082121 | 30.769 | 299 | 183 | 11 | 1 | 288 | 1 | 286 | 3.38e-23 | 99.8 |
| Msa1424960 | MtrunA17_Chr1g0203721 | 29.434 | 265 | 162 | 8 | 44 | 292 | 65 | 320 | 3.41e-23 | 99.8 |
| Msa1424960 | MtrunA17_Chr6g0451441 | 32.500 | 200 | 125 | 5 | 10 | 203 | 52 | 247 | 6.10e-23 | 98.2 |
| Msa1424960 | MtrunA17_Chr6g0458391 | 28.938 | 273 | 163 | 9 | 26 | 288 | 207 | 458 | 1.10e-21 | 95.5 |
| Msa1424960 | MtrunA17_Chr1g0198761 | 27.046 | 281 | 181 | 9 | 45 | 305 | 50 | 326 | 1.55e-20 | 92.0 |
| Msa1424960 | MtrunA17_Chr1g0203051 | 26.378 | 254 | 174 | 7 | 48 | 292 | 85 | 334 | 2.68e-20 | 91.3 |
| Msa1424960 | MtrunA17_Chr2g0276841 | 25.670 | 261 | 166 | 9 | 42 | 283 | 70 | 321 | 3.13e-20 | 90.9 |
| Msa1424960 | MtrunA17_Chr3g0118611 | 47.561 | 82 | 43 | 0 | 211 | 292 | 118 | 199 | 1.89e-19 | 89.0 |
| Msa1424960 | MtrunA17_Chr2g0287061 | 27.372 | 274 | 153 | 10 | 23 | 288 | 163 | 398 | 1.39e-17 | 83.2 |
| Msa1424960 | MtrunA17_Chr2g0294841 | 26.172 | 256 | 174 | 6 | 42 | 283 | 45 | 299 | 2.71e-17 | 82.4 |
| Msa1424960 | MtrunA17_Chr5g0448511 | 39.362 | 94 | 56 | 1 | 199 | 292 | 1 | 93 | 3.39e-17 | 82.0 |
| Msa1424960 | MtrunA17_Chr5g0431001 | 26.000 | 300 | 185 | 10 | 24 | 292 | 33 | 326 | 6.02e-17 | 80.9 |
| Msa1424960 | MtrunA17_Chr1g0164591 | 33.333 | 180 | 93 | 8 | 120 | 288 | 3 | 166 | 2.83e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424960 | AT1G76320.3 | 34.524 | 252 | 139 | 6 | 48 | 288 | 3 | 239 | 1.02e-39 | 147 |
| Msa1424960 | AT1G76320.2 | 34.524 | 252 | 139 | 6 | 48 | 288 | 3 | 239 | 1.49e-39 | 147 |
| Msa1424960 | AT1G76320.1 | 34.524 | 252 | 139 | 6 | 48 | 288 | 3 | 239 | 1.62e-39 | 147 |
| Msa1424960 | AT1G76320.4 | 34.524 | 252 | 139 | 6 | 48 | 288 | 3 | 239 | 1.62e-39 | 147 |
| Msa1424960 | AT4G15090.1 | 30.588 | 255 | 172 | 3 | 39 | 288 | 48 | 302 | 5.23e-36 | 137 |
| Msa1424960 | AT4G15090.5 | 30.588 | 255 | 172 | 3 | 39 | 288 | 48 | 302 | 5.23e-36 | 137 |
| Msa1424960 | AT4G15090.3 | 30.588 | 255 | 172 | 3 | 39 | 288 | 48 | 302 | 5.23e-36 | 137 |
| Msa1424960 | AT4G15090.2 | 30.588 | 255 | 172 | 3 | 39 | 288 | 48 | 302 | 5.23e-36 | 137 |
| Msa1424960 | AT4G15090.4 | 30.588 | 255 | 172 | 3 | 39 | 288 | 48 | 302 | 5.23e-36 | 137 |
| Msa1424960 | AT4G38180.1 | 29.433 | 282 | 188 | 6 | 20 | 292 | 51 | 330 | 6.23e-33 | 128 |
| Msa1424960 | AT3G22170.2 | 28.846 | 260 | 146 | 5 | 41 | 283 | 69 | 306 | 2.03e-29 | 118 |
| Msa1424960 | AT3G22170.1 | 28.846 | 260 | 146 | 5 | 41 | 283 | 69 | 306 | 2.03e-29 | 118 |
| Msa1424960 | AT1G52520.1 | 30.976 | 297 | 173 | 9 | 9 | 285 | 37 | 321 | 1.93e-28 | 115 |
| Msa1424960 | AT1G80010.1 | 29.688 | 256 | 163 | 8 | 42 | 285 | 95 | 345 | 2.29e-27 | 112 |
| Msa1424960 | AT4G19990.7 | 32.184 | 261 | 125 | 9 | 45 | 288 | 38 | 263 | 5.07e-27 | 111 |
| Msa1424960 | AT4G19990.6 | 32.184 | 261 | 125 | 9 | 45 | 288 | 24 | 249 | 5.24e-27 | 111 |
| Msa1424960 | AT4G19990.2 | 32.184 | 261 | 125 | 9 | 45 | 288 | 24 | 249 | 5.24e-27 | 111 |
| Msa1424960 | AT4G19990.5 | 32.184 | 261 | 125 | 9 | 45 | 288 | 24 | 249 | 5.37e-27 | 111 |
| Msa1424960 | AT4G19990.3 | 32.184 | 261 | 125 | 9 | 45 | 288 | 24 | 249 | 5.85e-27 | 111 |
| Msa1424960 | AT4G19990.4 | 32.184 | 261 | 125 | 9 | 45 | 288 | 24 | 249 | 5.85e-27 | 111 |
| Msa1424960 | AT2G27110.2 | 30.545 | 275 | 159 | 6 | 23 | 292 | 30 | 277 | 4.12e-26 | 108 |
| Msa1424960 | AT2G27110.1 | 30.545 | 275 | 159 | 6 | 23 | 292 | 30 | 277 | 4.12e-26 | 108 |
| Msa1424960 | AT1G10240.2 | 27.899 | 276 | 168 | 12 | 28 | 283 | 35 | 299 | 1.83e-21 | 95.1 |
| Msa1424960 | AT1G10240.1 | 27.899 | 276 | 168 | 12 | 28 | 283 | 35 | 299 | 1.83e-21 | 95.1 |
| Msa1424960 | AT2G27110.3 | 36.220 | 127 | 73 | 1 | 166 | 292 | 14 | 132 | 8.75e-21 | 93.2 |
| Msa1424960 | AT4G19990.1 | 32.044 | 181 | 88 | 4 | 108 | 288 | 47 | 192 | 1.09e-20 | 92.8 |
| Msa1424960 | AT3G06250.2 | 26.295 | 251 | 145 | 8 | 41 | 288 | 189 | 402 | 2.41e-18 | 85.9 |
| Msa1424960 | AT3G06250.1 | 26.295 | 251 | 145 | 8 | 41 | 288 | 189 | 402 | 2.41e-18 | 85.9 |
| Msa1424960 | AT3G06250.3 | 26.295 | 251 | 145 | 8 | 41 | 288 | 189 | 402 | 2.41e-18 | 85.9 |
| Msa1424960 | AT5G18960.2 | 26.295 | 251 | 148 | 8 | 41 | 288 | 210 | 426 | 3.05e-18 | 85.5 |
| Msa1424960 | AT5G18960.1 | 26.295 | 251 | 148 | 8 | 41 | 288 | 210 | 426 | 3.05e-18 | 85.5 |
| Msa1424960 | AT2G32250.2 | 46.479 | 71 | 38 | 0 | 218 | 288 | 176 | 246 | 1.12e-16 | 80.9 |
| Msa1424960 | AT2G32250.4 | 46.479 | 71 | 38 | 0 | 218 | 288 | 176 | 246 | 1.12e-16 | 80.9 |
| Msa1424960 | AT2G32250.7 | 46.479 | 71 | 38 | 0 | 218 | 288 | 135 | 205 | 1.23e-16 | 80.9 |
| Msa1424960 | AT2G32250.6 | 46.479 | 71 | 38 | 0 | 218 | 288 | 176 | 246 | 1.23e-16 | 80.9 |
| Msa1424960 | AT2G32250.1 | 46.479 | 71 | 38 | 0 | 218 | 288 | 176 | 246 | 1.23e-16 | 80.9 |
| Msa1424960 | AT2G32250.3 | 46.479 | 71 | 38 | 0 | 218 | 288 | 176 | 246 | 1.23e-16 | 80.9 |
| Msa1424960 | AT2G32250.8 | 46.479 | 71 | 38 | 0 | 218 | 288 | 135 | 205 | 1.32e-16 | 80.9 |
| Msa1424960 | AT2G32250.5 | 46.479 | 71 | 38 | 0 | 218 | 288 | 176 | 246 | 1.37e-16 | 80.5 |
| Msa1424960 | AT5G28530.1 | 24.627 | 268 | 168 | 7 | 42 | 283 | 55 | 314 | 1.50e-15 | 77.4 |
| Msa1424960 | AT5G28530.3 | 24.627 | 268 | 168 | 7 | 42 | 283 | 55 | 314 | 1.56e-15 | 77.4 |
| Msa1424960 | AT5G28530.2 | 24.627 | 268 | 168 | 7 | 42 | 283 | 55 | 314 | 1.56e-15 | 77.4 |
| Msa1424960 | AT4G38170.1 | 43.210 | 81 | 41 | 2 | 213 | 292 | 19 | 95 | 4.75e-12 | 66.6 |
Find 32 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAGTTATGCCCAATCTA+TGG | 0.242427 | tig0025808:+29308 | Msa1424960:CDS |
| AATGCATGTATTTCTTTAGA+TGG | 0.249459 | tig0025808:+29483 | Msa1424960:CDS |
| TATGCCCAATCTATGGGTTT+TGG | 0.292447 | tig0025808:+29315 | Msa1424960:CDS |
| AGGGCTGCATATGAATATTT+TGG | 0.330794 | tig0025808:+29888 | Msa1424960:CDS |
| CTAAAATAGCGTGCTTTGTC+AGG | 0.363103 | tig0025808:-29555 | None:intergenic |
| TAACTCCAAAACCCATAGAT+TGG | 0.409903 | tig0025808:-29320 | None:intergenic |
| AAGTGAGGAGACTACGACTT+GGG | 0.414907 | tig0025808:+29736 | Msa1424960:CDS |
| GAATATGACATTTGGTGAAA+AGG | 0.417591 | tig0025808:+29692 | Msa1424960:CDS |
| TCATAAGTTACTCCAACAAA+TGG | 0.430007 | tig0025808:-29969 | None:intergenic |
| CATAAGTTACTCCAACAAAT+GGG | 0.431332 | tig0025808:-29968 | None:intergenic |
| AACTCCAAAACCCATAGATT+GGG | 0.455626 | tig0025808:-29319 | None:intergenic |
| GGTTATGAGAATATGACATT+TGG | 0.482364 | tig0025808:+29684 | Msa1424960:CDS |
| ACTCCAACAAATGGGGCAAA+AGG | 0.482713 | tig0025808:-29960 | None:intergenic |
| TTTGGGCAGATGCGAGATGT+AGG | 0.485083 | tig0025808:+29868 | Msa1424960:CDS |
| TCAATGGTTGTTGAAGCAAA+TGG | 0.495114 | tig0025808:+29663 | Msa1424960:CDS |
| AAAATCAATTCAATTTACAT+AGG | 0.495234 | tig0025808:+30031 | Msa1424960:CDS |
| TGGATCAAAGTATGTGAGTA+AGG | 0.495275 | tig0025808:+29404 | Msa1424960:CDS |
| AAGAGTTATGCCCAATCTAT+GGG | 0.502102 | tig0025808:+29309 | Msa1424960:CDS |
| TTGGGCAGATGCGAGATGTA+GGG | 0.512318 | tig0025808:+29869 | Msa1424960:CDS |
| AGGAGACTACGACTTGGGGC+TGG | 0.514634 | tig0025808:+29741 | Msa1424960:CDS |
| ATTTGTATCTTCTGATGAAG+AGG | 0.520293 | tig0025808:+29167 | Msa1424960:CDS |
| TGGATCCTCGTTTGAAAAGG+AGG | 0.528466 | tig0025808:+29592 | Msa1424960:CDS |
| TTAGAACTCAATGATCAAGC+TGG | 0.567016 | tig0025808:+29615 | Msa1424960:CDS |
| GATGAAGAGGAAATCAGAGA+GGG | 0.625109 | tig0025808:+29180 | Msa1424960:CDS |
| GAAACTACATAGATAAAGTG+AGG | 0.639656 | tig0025808:+29721 | Msa1424960:CDS |
| AGTGAGGAGACTACGACTTG+GGG | 0.641932 | tig0025808:+29737 | Msa1424960:CDS |
| CTAAATATAGTTCCAACCTG+AGG | 0.648571 | tig0025808:-29258 | None:intergenic |
| AAAGTGAGGAGACTACGACT+TGG | 0.649574 | tig0025808:+29735 | Msa1424960:CDS |
| ACTTGGGGCTGGAGATGCTG+AGG | 0.650883 | tig0025808:+29752 | Msa1424960:CDS |
| TTTACTCTAGCATGTAGTCG+TGG | 0.653028 | tig0025808:+29384 | Msa1424960:CDS |
| ATAAGTTACTCCAACAAATG+GGG | 0.655248 | tig0025808:-29967 | None:intergenic |
| TGATGAAGAGGAAATCAGAG+AGG | 0.679814 | tig0025808:+29179 | Msa1424960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGATTTATCATATAA+AGG | - | tig0025808:29007-29026 | None:intergenic | 10.0% |
| !!! | AAAATTGATTTATCATATAA+AGG | - | tig0025808:29007-29026 | None:intergenic | 10.0% |
| !!! | TTTTTAATTTATTGCATTAG+TGG | + | tig0025808:29137-29156 | Msa1424960:intron | 15.0% |
| !!! | ATGTAAATTGAATTGATTTT+TGG | - | tig0025808:30031-30050 | None:intergenic | 15.0% |
| !!! | TTTTTAATTTATTGCATTAG+TGG | + | tig0025808:29137-29156 | Msa1424960:intron | 15.0% |
| !!! | ATGTAAATTGAATTGATTTT+TGG | - | tig0025808:30031-30050 | None:intergenic | 15.0% |
| !! | TAAGTTAACTACCTTAAATT+GGG | + | tig0025808:28948-28967 | Msa1424960:intron | 20.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | + | tig0025808:29036-29055 | Msa1424960:intron | 20.0% |
| !! | TAAGCATTAAATACAAATCT+AGG | - | tig0025808:29067-29086 | None:intergenic | 20.0% |
| !!! | TTTTAGAAGTAGTAAGTTTT+TGG | + | tig0025808:29572-29591 | Msa1424960:CDS | 20.0% |
| !!! | TTCTAAAAAAATCATCTTGT+TGG | - | tig0025808:29995-30014 | None:intergenic | 20.0% |
| !! | TAAGTTAACTACCTTAAATT+GGG | + | tig0025808:28948-28967 | Msa1424960:intron | 20.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | + | tig0025808:29036-29055 | Msa1424960:intron | 20.0% |
| !! | TAAGCATTAAATACAAATCT+AGG | - | tig0025808:29067-29086 | None:intergenic | 20.0% |
| !!! | TTTTAGAAGTAGTAAGTTTT+TGG | + | tig0025808:29572-29591 | Msa1424960:CDS | 20.0% |
| !!! | TTCTAAAAAAATCATCTTGT+TGG | - | tig0025808:29995-30014 | None:intergenic | 20.0% |
| ! | GTAAGTTAACTACCTTAAAT+TGG | + | tig0025808:28947-28966 | Msa1424960:intron | 25.0% |
| ! | ATACTCAAAAAGTTCATCTT+TGG | - | tig0025808:29286-29305 | None:intergenic | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | + | tig0025808:29351-29370 | Msa1424960:CDS | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | + | tig0025808:29352-29371 | Msa1424960:CDS | 25.0% |
| !! | GAGTTTTTGTTAAAGGATTT+GGG | - | tig0025808:29446-29465 | None:intergenic | 25.0% |
| !! | TGAGTTTTTGTTAAAGGATT+TGG | - | tig0025808:29447-29466 | None:intergenic | 25.0% |
| !! | TTACACTGAGTTTTTGTTAA+AGG | - | tig0025808:29453-29472 | None:intergenic | 25.0% |
| ! | TTTAACAAAAACTCAGTGTA+AGG | + | tig0025808:29452-29471 | Msa1424960:CDS | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | + | tig0025808:29483-29502 | Msa1424960:CDS | 25.0% |
| !! | AAACAGAAATTTTCGATCAA+TGG | + | tig0025808:29647-29666 | Msa1424960:CDS | 25.0% |
| ! | GTAAGTTAACTACCTTAAAT+TGG | + | tig0025808:28947-28966 | Msa1424960:intron | 25.0% |
| ! | ATACTCAAAAAGTTCATCTT+TGG | - | tig0025808:29286-29305 | None:intergenic | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | + | tig0025808:29351-29370 | Msa1424960:CDS | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | + | tig0025808:29352-29371 | Msa1424960:CDS | 25.0% |
| !! | GAGTTTTTGTTAAAGGATTT+GGG | - | tig0025808:29446-29465 | None:intergenic | 25.0% |
| !! | TGAGTTTTTGTTAAAGGATT+TGG | - | tig0025808:29447-29466 | None:intergenic | 25.0% |
| !! | TTACACTGAGTTTTTGTTAA+AGG | - | tig0025808:29453-29472 | None:intergenic | 25.0% |
| ! | TTTAACAAAAACTCAGTGTA+AGG | + | tig0025808:29452-29471 | Msa1424960:CDS | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | + | tig0025808:29483-29502 | Msa1424960:CDS | 25.0% |
| !! | AAACAGAAATTTTCGATCAA+TGG | + | tig0025808:29647-29666 | Msa1424960:CDS | 25.0% |
| ATTTGTATCTTCTGATGAAG+AGG | + | tig0025808:29167-29186 | Msa1424960:CDS | 30.0% | |
| GGTTATGAGAATATGACATT+TGG | + | tig0025808:29684-29703 | Msa1424960:CDS | 30.0% | |
| ! | GAATATGACATTTGGTGAAA+AGG | + | tig0025808:29692-29711 | Msa1424960:CDS | 30.0% |
| GAAACTACATAGATAAAGTG+AGG | + | tig0025808:29721-29740 | Msa1424960:CDS | 30.0% | |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | + | tig0025808:29851-29870 | Msa1424960:CDS | 30.0% |
| ATAAGTTACTCCAACAAATG+GGG | - | tig0025808:29970-29989 | None:intergenic | 30.0% | |
| CATAAGTTACTCCAACAAAT+GGG | - | tig0025808:29971-29990 | None:intergenic | 30.0% | |
| TCATAAGTTACTCCAACAAA+TGG | - | tig0025808:29972-29991 | None:intergenic | 30.0% | |
| ATTTGTATCTTCTGATGAAG+AGG | + | tig0025808:29167-29186 | Msa1424960:CDS | 30.0% | |
| GGTTATGAGAATATGACATT+TGG | + | tig0025808:29684-29703 | Msa1424960:CDS | 30.0% | |
| ! | GAATATGACATTTGGTGAAA+AGG | + | tig0025808:29692-29711 | Msa1424960:CDS | 30.0% |
| GAAACTACATAGATAAAGTG+AGG | + | tig0025808:29721-29740 | Msa1424960:CDS | 30.0% | |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | + | tig0025808:29851-29870 | Msa1424960:CDS | 30.0% |
| ATAAGTTACTCCAACAAATG+GGG | - | tig0025808:29970-29989 | None:intergenic | 30.0% | |
| CATAAGTTACTCCAACAAAT+GGG | - | tig0025808:29971-29990 | None:intergenic | 30.0% | |
| TCATAAGTTACTCCAACAAA+TGG | - | tig0025808:29972-29991 | None:intergenic | 30.0% | |
| ATGGGTGATAACCCAATTTA+AGG | - | tig0025808:28962-28981 | None:intergenic | 35.0% | |
| !! | GTAGTTTGATCAGTTGATGA+GGG | - | tig0025808:28985-29004 | None:intergenic | 35.0% |
| TCATGAAGATGAAAAACCTC+AGG | + | tig0025808:29242-29261 | Msa1424960:CDS | 35.0% | |
| CTAAATATAGTTCCAACCTG+AGG | - | tig0025808:29261-29280 | None:intergenic | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | + | tig0025808:29309-29328 | Msa1424960:CDS | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | - | tig0025808:29322-29341 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | - | tig0025808:29323-29342 | None:intergenic | 35.0% | |
| TGGATCAAAGTATGTGAGTA+AGG | + | tig0025808:29404-29423 | Msa1424960:CDS | 35.0% | |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | + | tig0025808:29589-29608 | Msa1424960:CDS | 35.0% |
| TTAGAACTCAATGATCAAGC+TGG | + | tig0025808:29615-29634 | Msa1424960:CDS | 35.0% | |
| TCAATGGTTGTTGAAGCAAA+TGG | + | tig0025808:29663-29682 | Msa1424960:CDS | 35.0% | |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | + | tig0025808:29850-29869 | Msa1424960:CDS | 35.0% |
| ! | AGGGCTGCATATGAATATTT+TGG | + | tig0025808:29888-29907 | Msa1424960:CDS | 35.0% |
| ATGGGTGATAACCCAATTTA+AGG | - | tig0025808:28962-28981 | None:intergenic | 35.0% | |
| !! | GTAGTTTGATCAGTTGATGA+GGG | - | tig0025808:28985-29004 | None:intergenic | 35.0% |
| TCATGAAGATGAAAAACCTC+AGG | + | tig0025808:29242-29261 | Msa1424960:CDS | 35.0% | |
| CTAAATATAGTTCCAACCTG+AGG | - | tig0025808:29261-29280 | None:intergenic | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | + | tig0025808:29309-29328 | Msa1424960:CDS | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | - | tig0025808:29322-29341 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | - | tig0025808:29323-29342 | None:intergenic | 35.0% | |
| TGGATCAAAGTATGTGAGTA+AGG | + | tig0025808:29404-29423 | Msa1424960:CDS | 35.0% | |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | + | tig0025808:29589-29608 | Msa1424960:CDS | 35.0% |
| TTAGAACTCAATGATCAAGC+TGG | + | tig0025808:29615-29634 | Msa1424960:CDS | 35.0% | |
| TCAATGGTTGTTGAAGCAAA+TGG | + | tig0025808:29663-29682 | Msa1424960:CDS | 35.0% | |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | + | tig0025808:29850-29869 | Msa1424960:CDS | 35.0% |
| ! | AGGGCTGCATATGAATATTT+TGG | + | tig0025808:29888-29907 | Msa1424960:CDS | 35.0% |
| !! | TTGATCAGTTGATGAGGGAT+GGG | - | tig0025808:28980-28999 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | - | tig0025808:28981-29000 | None:intergenic | 40.0% |
| ! | GGTAGTTTGATCAGTTGATG+AGG | - | tig0025808:28986-29005 | None:intergenic | 40.0% |
| TGATGAAGAGGAAATCAGAG+AGG | + | tig0025808:29179-29198 | Msa1424960:CDS | 40.0% | |
| GATGAAGAGGAAATCAGAGA+GGG | + | tig0025808:29180-29199 | Msa1424960:CDS | 40.0% | |
| GAAGATGAAAAACCTCAGGT+TGG | + | tig0025808:29246-29265 | Msa1424960:CDS | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | + | tig0025808:29308-29327 | Msa1424960:CDS | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | + | tig0025808:29315-29334 | Msa1424960:CDS | 40.0% |
| TTTACTCTAGCATGTAGTCG+TGG | + | tig0025808:29384-29403 | Msa1424960:CDS | 40.0% | |
| CTAAAATAGCGTGCTTTGTC+AGG | - | tig0025808:29558-29577 | None:intergenic | 40.0% | |
| ! | TCTAACCTCCTTTTCAAACG+AGG | - | tig0025808:29600-29619 | None:intergenic | 40.0% |
| !! | TTGATCAGTTGATGAGGGAT+GGG | - | tig0025808:28980-28999 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | - | tig0025808:28981-29000 | None:intergenic | 40.0% |
| ! | GGTAGTTTGATCAGTTGATG+AGG | - | tig0025808:28986-29005 | None:intergenic | 40.0% |
| TGATGAAGAGGAAATCAGAG+AGG | + | tig0025808:29179-29198 | Msa1424960:CDS | 40.0% | |
| GATGAAGAGGAAATCAGAGA+GGG | + | tig0025808:29180-29199 | Msa1424960:CDS | 40.0% | |
| GAAGATGAAAAACCTCAGGT+TGG | + | tig0025808:29246-29265 | Msa1424960:CDS | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | + | tig0025808:29308-29327 | Msa1424960:CDS | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | + | tig0025808:29315-29334 | Msa1424960:CDS | 40.0% |
| TTTACTCTAGCATGTAGTCG+TGG | + | tig0025808:29384-29403 | Msa1424960:CDS | 40.0% | |
| CTAAAATAGCGTGCTTTGTC+AGG | - | tig0025808:29558-29577 | None:intergenic | 40.0% | |
| ! | TCTAACCTCCTTTTCAAACG+AGG | - | tig0025808:29600-29619 | None:intergenic | 40.0% |
| TGGATCCTCGTTTGAAAAGG+AGG | + | tig0025808:29592-29611 | Msa1424960:CDS | 45.0% | |
| AAAGTGAGGAGACTACGACT+TGG | + | tig0025808:29735-29754 | Msa1424960:CDS | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | + | tig0025808:29736-29755 | Msa1424960:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCATTTGT+TGG | + | tig0025808:29957-29976 | Msa1424960:CDS | 45.0% |
| ACTCCAACAAATGGGGCAAA+AGG | - | tig0025808:29963-29982 | None:intergenic | 45.0% | |
| TGGATCCTCGTTTGAAAAGG+AGG | + | tig0025808:29592-29611 | Msa1424960:CDS | 45.0% | |
| AAAGTGAGGAGACTACGACT+TGG | + | tig0025808:29735-29754 | Msa1424960:CDS | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | + | tig0025808:29736-29755 | Msa1424960:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCATTTGT+TGG | + | tig0025808:29957-29976 | Msa1424960:CDS | 45.0% |
| ACTCCAACAAATGGGGCAAA+AGG | - | tig0025808:29963-29982 | None:intergenic | 45.0% | |
| AGTGAGGAGACTACGACTTG+GGG | + | tig0025808:29737-29756 | Msa1424960:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | + | tig0025808:29868-29887 | Msa1424960:CDS | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | + | tig0025808:29869-29888 | Msa1424960:CDS | 50.0% | |
| AGTGAGGAGACTACGACTTG+GGG | + | tig0025808:29737-29756 | Msa1424960:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | + | tig0025808:29868-29887 | Msa1424960:CDS | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | + | tig0025808:29869-29888 | Msa1424960:CDS | 50.0% | |
| ! | AGGAGACTACGACTTGGGGC+TGG | + | tig0025808:29741-29760 | Msa1424960:CDS | 60.0% |
| ACTTGGGGCTGGAGATGCTG+AGG | + | tig0025808:29752-29771 | Msa1424960:CDS | 60.0% | |
| ! | AGGAGACTACGACTTGGGGC+TGG | + | tig0025808:29741-29760 | Msa1424960:CDS | 60.0% |
| ACTTGGGGCTGGAGATGCTG+AGG | + | tig0025808:29752-29771 | Msa1424960:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025808 | gene | 28925 | 30052 | 28925 | ID=Msa1424960;Name=Msa1424960 |
| tig0025808 | mRNA | 28925 | 30052 | 28925 | ID=Msa1424960-mRNA-1;Parent=Msa1424960;Name=Msa1424960-mRNA-1;_AED=0.12;_eAED=0.27;_QI=0|0|0|0.5|1|1|2|0|305 |
| tig0025808 | exon | 28925 | 28946 | 28925 | ID=Msa1424960-mRNA-1:exon:4067;Parent=Msa1424960-mRNA-1 |
| tig0025808 | exon | 29157 | 30052 | 29157 | ID=Msa1424960-mRNA-1:exon:4068;Parent=Msa1424960-mRNA-1 |
| tig0025808 | CDS | 28925 | 28946 | 28925 | ID=Msa1424960-mRNA-1:cds;Parent=Msa1424960-mRNA-1 |
| tig0025808 | CDS | 29157 | 30052 | 29157 | ID=Msa1424960-mRNA-1:cds;Parent=Msa1424960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
