Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425170 | XP_003603985.1 | 99.541 | 218 | 1 | 0 | 1 | 218 | 1 | 218 | 1.84e-163 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425170 | sp|Q9FEN9|SHL_ARATH | 70.233 | 215 | 61 | 2 | 1 | 215 | 1 | 212 | 3.67e-114 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425170 | G7J7R0 | 99.541 | 218 | 1 | 0 | 1 | 218 | 1 | 218 | 8.78e-164 | 459 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1425170 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425170 | MtrunA17_Chr3g0145031 | 99.541 | 218 | 1 | 0 | 1 | 218 | 1 | 218 | 1.69e-167 | 459 |
| Msa1425170 | MtrunA17_Chr3g0145041 | 71.000 | 200 | 54 | 1 | 19 | 218 | 1 | 196 | 4.77e-105 | 301 |
| Msa1425170 | MtrunA17_Chr2g0316511 | 67.580 | 219 | 67 | 3 | 1 | 218 | 1 | 216 | 6.57e-105 | 301 |
| Msa1425170 | MtrunA17_Chr2g0324381 | 50.521 | 192 | 87 | 5 | 1 | 190 | 10 | 195 | 2.02e-62 | 193 |
| Msa1425170 | MtrunA17_Chr5g0447451 | 46.512 | 129 | 59 | 5 | 74 | 192 | 15 | 143 | 2.53e-31 | 112 |
| Msa1425170 | MtrunA17_Chr2g0324361 | 52.000 | 100 | 44 | 3 | 27 | 126 | 12 | 107 | 5.28e-29 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425170 | AT4G39100.1 | 70.233 | 215 | 61 | 2 | 1 | 215 | 1 | 212 | 3.73e-115 | 328 |
| Msa1425170 | AT4G22140.2 | 67.431 | 218 | 67 | 3 | 2 | 218 | 10 | 224 | 8.53e-111 | 317 |
| Msa1425170 | AT4G22140.1 | 67.299 | 211 | 65 | 3 | 2 | 211 | 10 | 217 | 1.97e-106 | 306 |
| Msa1425170 | AT4G22140.3 | 67.299 | 211 | 65 | 3 | 2 | 211 | 10 | 217 | 1.97e-106 | 306 |
| Msa1425170 | AT4G39100.2 | 76.364 | 165 | 37 | 1 | 1 | 165 | 1 | 163 | 4.70e-96 | 277 |
| Msa1425170 | AT4G04260.2 | 62.162 | 185 | 66 | 3 | 28 | 210 | 9 | 191 | 1.94e-78 | 234 |
| Msa1425170 | AT4G04260.1 | 61.111 | 180 | 66 | 3 | 33 | 210 | 1 | 178 | 3.09e-74 | 223 |
| Msa1425170 | AT4G04260.3 | 71.186 | 118 | 33 | 1 | 25 | 142 | 24 | 140 | 1.46e-57 | 179 |
Find 92 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACTCTAGGTTTCGCTTT+GGG | 0.256713 | tig0025831:+5729 | None:intergenic |
| AGAGAAGTAGAGGGGTTTGT+TGG | 0.281029 | tig0025831:+5894 | None:intergenic |
| AAAAGAAGGTTATGGCAATT+TGG | 0.283943 | tig0025831:+5864 | None:intergenic |
| AGGTTTCGCTTTGGGGCTTT+TGG | 0.301619 | tig0025831:+5737 | None:intergenic |
| CCTCCACTTCCAAGGGAAAC+AGG | 0.330389 | tig0025831:+1901 | None:intergenic |
| CTTTGCCACGTAAGAGGGTT+TGG | 0.340256 | tig0025831:+5551 | None:intergenic |
| GAAGGAAAGTGTATTGTTCA+TGG | 0.347757 | tig0025831:-5369 | Msa1425170:CDS |
| AAAGAAGTGGTCAAGTCTTT+CGG | 0.363321 | tig0025831:+2917 | None:intergenic |
| ACTCACACTGCAACTCTATC+AGG | 0.365443 | tig0025831:+5258 | None:intergenic |
| GAAAAGAAAGATTGAATTGA+AGG | 0.367791 | tig0025831:+5828 | None:intergenic |
| TTAACGTCCGGTGGTATTAC+CGG | 0.372519 | tig0025831:-5485 | Msa1425170:CDS |
| CACTGAACCATCAGATCATC+AGG | 0.376018 | tig0025831:+4475 | None:intergenic |
| TGTGAAAGTTGTTCCGTTGA+AGG | 0.381340 | tig0025831:-2894 | Msa1425170:CDS |
| CATCAGATCATCAGGGTTGT+AGG | 0.418034 | tig0025831:+4483 | None:intergenic |
| ATCAAAGAGTTTGACTTTCG+AGG | 0.418489 | tig0025831:+6000 | None:intergenic |
| CTAATTTAAAAGTCTGTCAA+TGG | 0.420485 | tig0025831:-1937 | Msa1425170:intron |
| CATAACATCGCTTCTACCTT+CGG | 0.423203 | tig0025831:+2098 | None:intergenic |
| GATGTCATCGTGTTCGTAGT+TGG | 0.429318 | tig0025831:-1719 | Msa1425170:three_prime_UTR |
| ATCCCTGTTTCCCTTGGAAG+TGG | 0.436201 | tig0025831:-1904 | Msa1425170:three_prime_UTR |
| TTCGATCTTTGCCACGTAAG+AGG | 0.444854 | tig0025831:+5545 | None:intergenic |
| TATGACTCTAGGTTTCGCTT+TGG | 0.453882 | tig0025831:+5728 | None:intergenic |
| ATAGAAATAAAAGAAGGTTA+TGG | 0.462193 | tig0025831:+5856 | None:intergenic |
| CAAACTCTTTGATAGTAAGT+TGG | 0.472062 | tig0025831:-5990 | Msa1425170:five_prime_UTR |
| TTTGAGTACAATTCTGCTAC+TGG | 0.478917 | tig0025831:-5291 | Msa1425170:CDS |
| TGGTAGTTAAAGAGAAGTAG+AGG | 0.479471 | tig0025831:+5884 | None:intergenic |
| AGTATCATCCCTGTTTCCCT+TGG | 0.485614 | tig0025831:-1910 | Msa1425170:three_prime_UTR |
| CAGAGTGCTGATACAATTGA+AGG | 0.496733 | tig0025831:-5387 | Msa1425170:CDS |
| AGTGTGAGGGCTGCAGTGAC+TGG | 0.500549 | tig0025831:-4456 | Msa1425170:intron |
| TCGATCTTTGCCACGTAAGA+GGG | 0.507398 | tig0025831:+5546 | None:intergenic |
| TGACTCTAGGTTTCGCTTTG+GGG | 0.508250 | tig0025831:+5730 | None:intergenic |
| GCCACGTAAGAGGGTTTGGA+TGG | 0.509773 | tig0025831:+5555 | None:intergenic |
| TTTACTAAAGTAGTGTCTAC+TGG | 0.510488 | tig0025831:+1767 | None:intergenic |
| GAGACAGTTTCACGGTTCAA+AGG | 0.514600 | tig0025831:-5439 | Msa1425170:CDS |
| GATTCTCTATCTATCCCCAT+CGG | 0.517084 | tig0025831:-1839 | Msa1425170:three_prime_UTR |
| CTGAACAAACTCTGTGACAA+TGG | 0.517564 | tig0025831:-2010 | Msa1425170:three_prime_UTR |
| GGTAGTTAAAGAGAAGTAGA+GGG | 0.520077 | tig0025831:+5885 | None:intergenic |
| TACCGGCCGGAGGAGTCAAT+TGG | 0.521187 | tig0025831:-5468 | Msa1425170:CDS |
| AACAAATCTGTCACAATCAA+AGG | 0.523901 | tig0025831:-5689 | Msa1425170:intron |
| ATCAGATCATCAGGGTTGTA+GGG | 0.525800 | tig0025831:+4484 | None:intergenic |
| CCTGTTTCCCTTGGAAGTGG+AGG | 0.538466 | tig0025831:-1901 | Msa1425170:three_prime_UTR |
| TGCTTTGTCTTTGAGTGGCA+TGG | 0.540617 | tig0025831:+5961 | None:intergenic |
| AGTAGACACTACTTTAGTAA+AGG | 0.540847 | tig0025831:-1765 | Msa1425170:three_prime_UTR |
| GGTAGAAGCGATGTTATGTA+AGG | 0.541584 | tig0025831:-2093 | Msa1425170:exon |
| CGGCCACCAATTGACTCCTC+CGG | 0.542045 | tig0025831:+5462 | None:intergenic |
| GAGAAAATAGAAATAAAAGA+AGG | 0.542861 | tig0025831:+5850 | None:intergenic |
| CTACAACCCTGATGATCTGA+TGG | 0.544719 | tig0025831:-4482 | Msa1425170:CDS |
| TGATCTGATGGTTCAGTGTG+AGG | 0.546259 | tig0025831:-4470 | Msa1425170:CDS |
| AAACACATCCTCCACTTCCA+AGG | 0.546710 | tig0025831:+1893 | None:intergenic |
| ATTCTCTATCTATCCCCATC+GGG | 0.547443 | tig0025831:-1838 | Msa1425170:three_prime_UTR |
| CGGCCGGAGGAGTCAATTGG+TGG | 0.557866 | tig0025831:-5465 | Msa1425170:CDS |
| AAGAGGTAGATCTGTAATGG+AGG | 0.561514 | tig0025831:-2064 | Msa1425170:three_prime_UTR |
| GAGGGTTTGGATGGATCAGA+TGG | 0.563022 | tig0025831:+5564 | None:intergenic |
| TACACTAAGCTTGATGCTGT+TGG | 0.564424 | tig0025831:-5336 | Msa1425170:CDS |
| CGGAGGAGTCAATTGGTGGC+CGG | 0.567621 | tig0025831:-5461 | Msa1425170:CDS |
| AGTTTGTTCAGCTCCTACCC+AGG | 0.568031 | tig0025831:+2022 | None:intergenic |
| GTTTGACTGAGTATGACTCT+AGG | 0.568800 | tig0025831:+5717 | None:intergenic |
| GTAGTTAAAGAGAAGTAGAG+GGG | 0.569534 | tig0025831:+5886 | None:intergenic |
| CTCCACTTCCAAGGGAAACA+GGG | 0.570140 | tig0025831:+1902 | None:intergenic |
| GGTGGCCGGAGACAGTTTCA+CGG | 0.570440 | tig0025831:-5447 | Msa1425170:CDS |
| TAAAATGCTTTGTCTTTGAG+TGG | 0.576034 | tig0025831:+5956 | None:intergenic |
| GAGTATGAACAAGGACCCGA+TGG | 0.577865 | tig0025831:+1823 | None:intergenic |
| TACCCAGGATTACAAAAGCA+AGG | 0.579112 | tig0025831:+2037 | None:intergenic |
| ACAGTCATGTCTATACAAGC+AGG | 0.584679 | tig0025831:+2948 | None:intergenic |
| CACCAATTGACTCCTCCGGC+CGG | 0.585767 | tig0025831:+5466 | None:intergenic |
| TCTTACGTGGCAAAGATCGA+AGG | 0.586509 | tig0025831:-5543 | Msa1425170:CDS |
| AGAGGTAGATCTGTAATGGA+GGG | 0.588300 | tig0025831:-2063 | Msa1425170:three_prime_UTR |
| TGGATACTAAACGCCGCCGA+AGG | 0.592385 | tig0025831:-2114 | Msa1425170:CDS |
| AACAACTTTCACAAAAGAAG+TGG | 0.593717 | tig0025831:+2904 | None:intergenic |
| TTGAACCGTGAAACTGTCTC+CGG | 0.596615 | tig0025831:+5442 | None:intergenic |
| AACACATCCTCCACTTCCAA+GGG | 0.601418 | tig0025831:+1894 | None:intergenic |
| GATCTGATGGTTCAGTGTGA+GGG | 0.605136 | tig0025831:-4469 | Msa1425170:CDS |
| CAAAAGTCTGAGTATGAACA+AGG | 0.607531 | tig0025831:+1814 | None:intergenic |
| CGTGTGCTTTACACATCACA+CGG | 0.608973 | tig0025831:+5927 | None:intergenic |
| CCTCCGGCCGGTAATACCAC+CGG | 0.617818 | tig0025831:+5478 | None:intergenic |
| ACCCAGGATTACAAAAGCAA+GGG | 0.628118 | tig0025831:+2038 | None:intergenic |
| CTAACGTTAAAGTTAACGTC+CGG | 0.628228 | tig0025831:-5497 | Msa1425170:CDS |
| ACTGCGTAACTTACTTACTG+TGG | 0.632355 | tig0025831:-6041 | None:intergenic |
| TACAAGACTCGCAGATACAA+AGG | 0.635448 | tig0025831:-2841 | Msa1425170:intron |
| AGTATGAACAAGGACCCGAT+GGG | 0.641512 | tig0025831:+1824 | None:intergenic |
| CGTCCGGTGGTATTACCGGC+CGG | 0.645283 | tig0025831:-5481 | Msa1425170:CDS |
| CTTACGTGGCAAAGATCGAA+GGG | 0.647189 | tig0025831:-5542 | Msa1425170:CDS |
| AACACAACACAACACAACCA+TGG | 0.662889 | tig0025831:-5765 | Msa1425170:exon |
| TCCATCCAAACCCTCTTACG+TGG | 0.664323 | tig0025831:-5556 | Msa1425170:CDS |
| CCGGTGGTATTACCGGCCGG+AGG | 0.671639 | tig0025831:-5478 | Msa1425170:CDS |
| ACGTTAAAGTTAACGTCCGG+TGG | 0.681208 | tig0025831:-5494 | Msa1425170:CDS |
| GAGGTAGATCTGTAATGGAG+GGG | 0.682019 | tig0025831:-2062 | Msa1425170:three_prime_UTR |
| TTGTATAGACATGACTGTGG+AGG | 0.686994 | tig0025831:-2943 | Msa1425170:CDS |
| GGGATCGAAGCTGATTCACG+AGG | 0.707404 | tig0025831:-5522 | Msa1425170:CDS |
| ACTGAACCATCAGATCATCA+GGG | 0.710984 | tig0025831:+4476 | None:intergenic |
| GTATGAACAAGGACCCGATG+GGG | 0.713752 | tig0025831:+1825 | None:intergenic |
| AACATCGCTTCTACCTTCGG+CGG | 0.747293 | tig0025831:+2101 | None:intergenic |
| TGCTTGTATAGACATGACTG+TGG | 0.776325 | tig0025831:-2946 | Msa1425170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAATTTAGATTATGTTT+TGG | - | tig0025831:2655-2674 | Msa1425170:intron | 10.0% |
| !!! | ATTTTATTACTTACTTTTAT+TGG | - | tig0025831:4594-4613 | Msa1425170:intron | 10.0% |
| !! | TCTTTATAATAACATAATAA+AGG | + | tig0025831:5414-5433 | None:intergenic | 10.0% |
| !!! | TTTTTTTAAAATGACAAAAG+TGG | + | tig0025831:2820-2839 | None:intergenic | 15.0% |
| !!! | AAACAATAATAATTCTAGTT+AGG | - | tig0025831:3940-3959 | Msa1425170:intron | 15.0% |
| !! | CCATTTATATTCATTTAAAT+AGG | + | tig0025831:3991-4010 | None:intergenic | 15.0% |
| !! | CCTATTTAAATGAATATAAA+TGG | - | tig0025831:3988-4007 | Msa1425170:intron | 15.0% |
| !! | TATTTATAAACCATGATAAA+TGG | - | tig0025831:4639-4658 | Msa1425170:intron | 15.0% |
| !! | ATAGAAATAAAAGAAGGTTA+TGG | + | tig0025831:1897-1916 | None:intergenic | 20.0% |
| !! | GAGAAAATAGAAATAAAAGA+AGG | + | tig0025831:1903-1922 | None:intergenic | 20.0% |
| !!! | TAAAGATATGATTTTTGTGT+TGG | - | tig0025831:2560-2579 | Msa1425170:intron | 20.0% |
| !! | TGTTATTGCAAAATAGAATT+TGG | - | tig0025831:2737-2756 | Msa1425170:intron | 20.0% |
| !! | GTTATTGCAAAATAGAATTT+GGG | - | tig0025831:2738-2757 | Msa1425170:intron | 20.0% |
| !!! | AGAAAACAAGTATTTTAAGT+CGG | - | tig0025831:3453-3472 | Msa1425170:intron | 20.0% |
| !! | ATCAAAAGAAACATAATTCT+CGG | + | tig0025831:3810-3829 | None:intergenic | 20.0% |
| !! | ATTATACTTGTAATTGTTCA+TGG | - | tig0025831:3828-3847 | Msa1425170:intron | 20.0% |
| !!! | AGACAATAATAATTCTAGTT+AGG | - | tig0025831:3877-3896 | Msa1425170:intron | 20.0% |
| !! | AAATATGCTCAAACAAATTA+AGG | - | tig0025831:4263-4282 | Msa1425170:intron | 20.0% |
| !! | AATATGCTCAAACAAATTAA+GGG | - | tig0025831:4264-4283 | Msa1425170:intron | 20.0% |
| !! | AAAATCTATCTTTCTATCTA+AGG | + | tig0025831:4489-4508 | None:intergenic | 20.0% |
| !! | AATAAACAGTTTAACAAGTT+GGG | + | tig0025831:4539-4558 | None:intergenic | 20.0% |
| !! | TAATAAACAGTTTAACAAGT+TGG | + | tig0025831:4540-4559 | None:intergenic | 20.0% |
| !! | AAGTAATAAAATGTCATACA+AGG | + | tig0025831:4586-4605 | None:intergenic | 20.0% |
| !! | TTCTATATGAGAATATAACT+AGG | - | tig0025831:5098-5117 | Msa1425170:intron | 20.0% |
| !! | ACATAAATTAACCCAAAAAA+AGG | + | tig0025831:5241-5260 | None:intergenic | 20.0% |
| !!! | TGTTTTCTTGTAAATTTTTC+TGG | - | tig0025831:5559-5578 | Msa1425170:CDS | 20.0% |
| !!! | ATTAGTGCTTATATTTTGTT+TGG | - | tig0025831:5604-5623 | Msa1425170:intron | 20.0% |
| !!! | TATATTTTGTTTGGTATTGT+AGG | - | tig0025831:5613-5632 | Msa1425170:intron | 20.0% |
| ! | GAAAAGAAAGATTGAATTGA+AGG | + | tig0025831:1925-1944 | None:intergenic | 25.0% |
| ! | AAAGAGAAAGAGAAAATTAG+AGG | + | tig0025831:2116-2135 | None:intergenic | 25.0% |
| !! | TATGATTTTTGTGTTGGAAA+TGG | - | tig0025831:2566-2585 | Msa1425170:intron | 25.0% |
| !!! | TTTTGGTTAATGACAACTTT+AGG | - | tig0025831:2672-2691 | Msa1425170:intron | 25.0% |
| ! | AAGGAGCAAATAATAGATTT+CGG | + | tig0025831:2887-2906 | None:intergenic | 25.0% |
| ! | TCAATCATAACATAATCCAA+GGG | + | tig0025831:3073-3092 | None:intergenic | 25.0% |
| ! | TTCAATCATAACATAATCCA+AGG | + | tig0025831:3074-3093 | None:intergenic | 25.0% |
| !!! | TATGATTGAAGCATTTTGAT+TGG | - | tig0025831:3084-3103 | Msa1425170:intron | 25.0% |
| !! | TTCATTGCTCAAATTTTTCA+TGG | - | tig0025831:3221-3240 | Msa1425170:intron | 25.0% |
| !! | AACTCTTTCCTATGATATTT+TGG | - | tig0025831:3514-3533 | Msa1425170:intron | 25.0% |
| ! | TCAAAAGAAACATAATTCTC+GGG | + | tig0025831:3809-3828 | None:intergenic | 25.0% |
| !! | CAATAATAATTCTAGTTAGG+TGG | - | tig0025831:3880-3899 | Msa1425170:intron | 25.0% |
| !! | TAATTCTAGTTAGGTGATTA+TGG | - | tig0025831:3949-3968 | Msa1425170:intron | 25.0% |
| ! | TTCATTTAAATAGGCTAACT+GGG | + | tig0025831:3982-4001 | None:intergenic | 25.0% |
| ! | ATTCATTTAAATAGGCTAAC+TGG | + | tig0025831:3983-4002 | None:intergenic | 25.0% |
| ! | ACTACGAATTGAATATATGA+TGG | - | tig0025831:4028-4047 | Msa1425170:intron | 25.0% |
| ! | ATTGAACAAATTAACGTAGT+TGG | - | tig0025831:4067-4086 | Msa1425170:intron | 25.0% |
| ! | ATGCTTAAAATTCACTTGAA+TGG | - | tig0025831:4174-4193 | Msa1425170:intron | 25.0% |
| ! | TGCTTAAAATTCACTTGAAT+GGG | - | tig0025831:4175-4194 | Msa1425170:intron | 25.0% |
| !! | GAAGAGGATTAATTCTTTTT+GGG | - | tig0025831:4360-4379 | Msa1425170:intron | 25.0% |
| !! | AAGAGGATTAATTCTTTTTG+GGG | - | tig0025831:4361-4380 | Msa1425170:intron | 25.0% |
| !! | CAAATCTTTTCCATTTATCA+TGG | + | tig0025831:4652-4671 | None:intergenic | 25.0% |
| ! | TGATAAATGGAAAAGATTTG+AGG | - | tig0025831:4652-4671 | Msa1425170:intron | 25.0% |
| ! | AAGCATAATATTTGTGATTC+AGG | - | tig0025831:4773-4792 | Msa1425170:intron | 25.0% |
| ! | AAGATATCAAAGATCTTAAG+TGG | + | tig0025831:5011-5030 | None:intergenic | 25.0% |
| ! | TCTAATAATACATCTTACAC+AGG | + | tig0025831:5044-5063 | None:intergenic | 25.0% |
| !!! | AGATTATCTGTTTTTAGACT+TGG | - | tig0025831:5061-5080 | Msa1425170:intron | 25.0% |
| ! | TAAATTAACCCAAAAAAAGG+TGG | + | tig0025831:5238-5257 | None:intergenic | 25.0% |
| ! | GGTTAATTTATGTTTCTTCA+AGG | - | tig0025831:5248-5267 | Msa1425170:intron | 25.0% |
| !! | TCAAGGTTAATGCTAATTTT+AGG | - | tig0025831:5265-5284 | Msa1425170:CDS | 25.0% |
| ! | AAATGTAGACCAAATATAGT+GGG | + | tig0025831:5378-5397 | None:intergenic | 25.0% |
| ! | AAAATGTAGACCAAATATAG+TGG | + | tig0025831:5379-5398 | None:intergenic | 25.0% |
| ! | CTAATTTAAAAGTCTGTCAA+TGG | - | tig0025831:5813-5832 | Msa1425170:five_prime_UTR | 25.0% |
| ! | CAAACTCTTTGATAGTAAGT+TGG | - | tig0025831:1760-1779 | Msa1425170:three_prime_UTR | 30.0% |
| TAAAATGCTTTGTCTTTGAG+TGG | + | tig0025831:1797-1816 | None:intergenic | 30.0% | |
| AAAAGAAGGTTATGGCAATT+TGG | + | tig0025831:1889-1908 | None:intergenic | 30.0% | |
| AACAAATCTGTCACAATCAA+AGG | - | tig0025831:2061-2080 | Msa1425170:three_prime_UTR | 30.0% | |
| !! | TGATTTTTGTTTGTTTCAGC+TGG | - | tig0025831:2144-2163 | Msa1425170:intron | 30.0% |
| !! | GATTTTTGTTTGTTTCAGCT+GGG | - | tig0025831:2145-2164 | Msa1425170:intron | 30.0% |
| !! | ATTTTTGTTTGTTTCAGCTG+GGG | - | tig0025831:2146-2165 | Msa1425170:intron | 30.0% |
| ! | CCTAATAGCTTTCATTTTAG+AGG | + | tig0025831:2853-2872 | None:intergenic | 30.0% |
| !! | CCTCTAAAATGAAAGCTATT+AGG | - | tig0025831:2850-2869 | Msa1425170:CDS | 30.0% |
| CAATCATAACATAATCCAAG+GGG | + | tig0025831:3072-3091 | None:intergenic | 30.0% | |
| TTCAACAATGGATCTTTATC+TGG | - | tig0025831:3180-3199 | Msa1425170:intron | 30.0% | |
| !! | TCAGTATCTGTTTGATTTTC+TGG | - | tig0025831:3382-3401 | Msa1425170:intron | 30.0% |
| !! | ATACTTGTTTTCTTCACATG+AGG | + | tig0025831:3446-3465 | None:intergenic | 30.0% |
| !!! | TCCTATGATATTTTGGTACT+TGG | - | tig0025831:3521-3540 | Msa1425170:intron | 30.0% |
| ACCAAGTACCAAAATATCAT+AGG | + | tig0025831:3525-3544 | None:intergenic | 30.0% | |
| !!! | TATGATATTTTGGTACTTGG+TGG | - | tig0025831:3524-3543 | Msa1425170:intron | 30.0% |
| AATTCTTAATAGCAGCTCAT+AGG | - | tig0025831:3567-3586 | Msa1425170:intron | 30.0% | |
| TAGATATGTGTATGCTTGTT+TGG | - | tig0025831:3759-3778 | Msa1425170:intron | 30.0% | |
| CATGGCATATGATATGATAT+AGG | - | tig0025831:3846-3865 | Msa1425170:intron | 30.0% | |
| !! | GTCATGTTATTTAGCTTTGT+TGG | - | tig0025831:3902-3921 | Msa1425170:intron | 30.0% |
| TCCACTTGGATAGATATTTA+CGG | + | tig0025831:4237-4256 | None:intergenic | 30.0% | |
| GCATATTTCAAAAATCCACT+TGG | + | tig0025831:4251-4270 | None:intergenic | 30.0% | |
| TCAAACAAATTAAGGGTAAG+TGG | - | tig0025831:4271-4290 | Msa1425170:intron | 30.0% | |
| ! | TAATGAAGATCTGAAATGCT+GGG | - | tig0025831:4295-4314 | Msa1425170:intron | 30.0% |
| !! | GTTCTTTTTAGAAGAAGAAG+AGG | - | tig0025831:4335-4354 | Msa1425170:intron | 30.0% |
| ! | GGAAGAGGATTAATTCTTTT+TGG | - | tig0025831:4359-4378 | Msa1425170:intron | 30.0% |
| ATCTAGTCCTTTCTTATTCT+GGG | - | tig0025831:4384-4403 | Msa1425170:intron | 30.0% | |
| ATCTTCTGTGTAATTATTCC+TGG | - | tig0025831:4413-4432 | Msa1425170:intron | 30.0% | |
| TATTGGAGACATGATCAATT+TGG | - | tig0025831:4611-4630 | Msa1425170:intron | 30.0% | |
| ! | ATGGAAAAGATTTGAGGTTT+CGG | - | tig0025831:4658-4677 | Msa1425170:intron | 30.0% |
| TTTGCAAGAGACCTTTATAA+TGG | - | tig0025831:4719-4738 | Msa1425170:intron | 30.0% | |
| TTGCAAGAGACCTTTATAAT+GGG | - | tig0025831:4720-4739 | Msa1425170:intron | 30.0% | |
| AACAACTTTCACAAAAGAAG+TGG | + | tig0025831:4849-4868 | None:intergenic | 30.0% | |
| TATGAGAATATAACTAGGCA+TGG | - | tig0025831:5103-5122 | Msa1425170:intron | 30.0% | |
| !!! | TATCTACTTCCACCTTTTTT+TGG | - | tig0025831:5226-5245 | Msa1425170:intron | 30.0% |
| !!! | ATCTACTTCCACCTTTTTTT+GGG | - | tig0025831:5227-5246 | Msa1425170:intron | 30.0% |
| ! | CCATATATGATTGTTTTCCA+TGG | + | tig0025831:5498-5517 | None:intergenic | 30.0% |
| CCATGGAAAACAATCATATA+TGG | - | tig0025831:5495-5514 | Msa1425170:CDS | 30.0% | |
| !! | ATTTTGTTTGGTATTGTAGG+TGG | - | tig0025831:5616-5635 | Msa1425170:intron | 30.0% |
| GTTATGTAAGGCTTAAAAAG+AGG | - | tig0025831:5669-5688 | Msa1425170:intron | 30.0% | |
| AAAAAGAGGTAGATCTGTAA+TGG | - | tig0025831:5683-5702 | Msa1425170:intron | 30.0% | |
| ATAGTCTTTCTCTACTTTCA+TGG | - | tig0025831:5779-5798 | Msa1425170:five_prime_UTR | 30.0% | |
| TTTACTAAAGTAGTGTCTAC+TGG | + | tig0025831:5986-6005 | None:intergenic | 30.0% | |
| AGTAGACACTACTTTAGTAA+AGG | - | tig0025831:5985-6004 | Msa1425170:five_prime_UTR | 30.0% | |
| ! | ATCAAAGAGTTTGACTTTCG+AGG | + | tig0025831:1753-1772 | None:intergenic | 35.0% |
| GTAGTTAAAGAGAAGTAGAG+GGG | + | tig0025831:1867-1886 | None:intergenic | 35.0% | |
| GGTAGTTAAAGAGAAGTAGA+GGG | + | tig0025831:1868-1887 | None:intergenic | 35.0% | |
| TGGTAGTTAAAGAGAAGTAG+AGG | + | tig0025831:1869-1888 | None:intergenic | 35.0% | |
| CTAACGTTAAAGTTAACGTC+CGG | - | tig0025831:2253-2272 | Msa1425170:intron | 35.0% | |
| ! | GAAGGAAAGTGTATTGTTCA+TGG | - | tig0025831:2381-2400 | Msa1425170:intron | 35.0% |
| TTTGAGTACAATTCTGCTAC+TGG | - | tig0025831:2459-2478 | Msa1425170:intron | 35.0% | |
| CTATTATTTGCTCCTTCGAT+TGG | - | tig0025831:2891-2910 | Msa1425170:CDS | 35.0% | |
| !! | TACAGAGTTGATAACCTGAA+TGG | - | tig0025831:2949-2968 | Msa1425170:CDS | 35.0% |
| ATGGATCTTTATCTGGATTC+TGG | - | tig0025831:3187-3206 | Msa1425170:intron | 35.0% | |
| ! | TTGCTCAAATTTTTCATGGC+AGG | - | tig0025831:3225-3244 | Msa1425170:intron | 35.0% |
| TTTAAGTCGGCATTAACCAT+AGG | - | tig0025831:3466-3485 | Msa1425170:intron | 35.0% | |
| AAGGAAAAATGATGCTCCTA+TGG | + | tig0025831:3485-3504 | None:intergenic | 35.0% | |
| GTCCTGTATAAGAAGAACAA+GGG | + | tig0025831:3713-3732 | None:intergenic | 35.0% | |
| AGTCCTGTATAAGAAGAACA+AGG | + | tig0025831:3714-3733 | None:intergenic | 35.0% | |
| GTGTATGCTTGTTTGGATTA+TGG | - | tig0025831:3766-3785 | Msa1425170:intron | 35.0% | |
| AGAAATAAGCAATGAGACAC+CGG | + | tig0025831:4116-4135 | None:intergenic | 35.0% | |
| CCACTTGGATAGATATTTAC+GGG | + | tig0025831:4236-4255 | None:intergenic | 35.0% | |
| ! | CTAATGAAGATCTGAAATGC+TGG | - | tig0025831:4294-4313 | Msa1425170:intron | 35.0% |
| !! | CTTTTTAGAAGAAGAAGAGG+AGG | - | tig0025831:4338-4357 | Msa1425170:intron | 35.0% |
| GATCTAGTCCTTTCTTATTC+TGG | - | tig0025831:4383-4402 | Msa1425170:intron | 35.0% | |
| TTCTGTGTAATTATTCCTGG+TGG | - | tig0025831:4416-4435 | Msa1425170:intron | 35.0% | |
| ! | CTTTAATTAGTCTGTGCATG+TGG | + | tig0025831:4461-4480 | None:intergenic | 35.0% |
| CTGTTGTGACAAACTTAATG+TGG | - | tig0025831:4509-4528 | Msa1425170:intron | 35.0% | |
| TGCAAGAGACCTTTATAATG+GGG | - | tig0025831:4721-4740 | Msa1425170:intron | 35.0% | |
| ! | ACCTTTATAATGGGGATATC+AGG | - | tig0025831:4729-4748 | Msa1425170:intron | 35.0% |
| AAAGAAGTGGTCAAGTCTTT+CGG | + | tig0025831:4836-4855 | None:intergenic | 35.0% | |
| CTCATACTATCAAACAACAG+TGG | + | tig0025831:4946-4965 | None:intergenic | 35.0% | |
| ATCAAAGATCTTAAGTGGTC+AGG | + | tig0025831:5006-5025 | None:intergenic | 35.0% | |
| GAAGCTTTGCCTACTTTAAT+GGG | + | tig0025831:5323-5342 | None:intergenic | 35.0% | |
| !! | TTTTTCTGGTGACGAAAGAA+AGG | - | tig0025831:5573-5592 | Msa1425170:CDS | 35.0% |
| CAAAAGTCTGAGTATGAACA+AGG | + | tig0025831:5939-5958 | None:intergenic | 35.0% | |
| AACACAACACAACACAACCA+TGG | - | tig0025831:1985-2004 | Msa1425170:intron | 40.0% | |
| ATGACTCTAGGTTTCGCTTT+GGG | + | tig0025831:2024-2043 | None:intergenic | 40.0% | |
| TATGACTCTAGGTTTCGCTT+TGG | + | tig0025831:2025-2044 | None:intergenic | 40.0% | |
| GTTTGACTGAGTATGACTCT+AGG | + | tig0025831:2036-2055 | None:intergenic | 40.0% | |
| !! | CAGAGTGCTGATACAATTGA+AGG | - | tig0025831:2363-2382 | Msa1425170:intron | 40.0% |
| TACACTAAGCTTGATGCTGT+TGG | - | tig0025831:2414-2433 | Msa1425170:intron | 40.0% | |
| AGGTTTCATTCTCCAATCGA+AGG | + | tig0025831:2906-2925 | None:intergenic | 40.0% | |
| GTTATCAACTCTGTATTCCG+AGG | + | tig0025831:2944-2963 | None:intergenic | 40.0% | |
| AAGAAGGATCATCACCATTC+AGG | + | tig0025831:2966-2985 | None:intergenic | 40.0% | |
| ATCCTTCTTCTCCAATGCAA+AGG | - | tig0025831:2977-2996 | Msa1425170:intron | 40.0% | |
| TCCTTCTTCTCCAATGCAAA+GGG | - | tig0025831:2978-2997 | Msa1425170:intron | 40.0% | |
| TGAACTGAGGATAAGGATGA+TGG | + | tig0025831:3116-3135 | None:intergenic | 40.0% | |
| CATCCAAATCAGGTTTACAG+CGG | + | tig0025831:3142-3161 | None:intergenic | 40.0% | |
| !! | CTGTAAACCTGATTTGGATG+AGG | - | tig0025831:3142-3161 | Msa1425170:intron | 40.0% |
| ATCAGATCATCAGGGTTGTA+GGG | + | tig0025831:3269-3288 | None:intergenic | 40.0% | |
| ACTGAACCATCAGATCATCA+GGG | + | tig0025831:3277-3296 | None:intergenic | 40.0% | |
| TTTCTGGACTCTTGTATGTC+TGG | - | tig0025831:3398-3417 | Msa1425170:intron | 40.0% | |
| GGAAAGAGTTGTCTTACTCA+AGG | + | tig0025831:3504-3523 | None:intergenic | 40.0% | |
| !! | GATTCTGCTTTGTTTCCTTC+TGG | - | tig0025831:3620-3639 | Msa1425170:intron | 40.0% |
| TAAGAAGAACAAGGGAGAGT+AGG | + | tig0025831:3705-3724 | None:intergenic | 40.0% | |
| CTCCCTTGTTCTTCTTATAC+AGG | - | tig0025831:3708-3727 | Msa1425170:intron | 40.0% | |
| GCATGACATTTCTTTCACAC+TGG | - | tig0025831:4089-4108 | Msa1425170:intron | 40.0% | |
| ACATTTCTTTCACACTGGTC+CGG | - | tig0025831:4094-4113 | Msa1425170:intron | 40.0% | |
| GATAGATATTTACGGGACCT+CGG | + | tig0025831:4229-4248 | None:intergenic | 40.0% | |
| CCCGTAAATATCTATCCAAG+TGG | - | tig0025831:4233-4252 | Msa1425170:intron | 40.0% | |
| AAATGCTGGGAAAGATTCAG+AGG | - | tig0025831:4308-4327 | Msa1425170:intron | 40.0% | |
| TAGTCCTTTCTTATTCTGGG+AGG | - | tig0025831:4387-4406 | Msa1425170:intron | 40.0% | |
| ! | AGTCCTTTCTTATTCTGGGA+GGG | - | tig0025831:4388-4407 | Msa1425170:intron | 40.0% |
| GGAGACATGATCAATTTGGA+TGG | - | tig0025831:4615-4634 | Msa1425170:intron | 40.0% | |
| CATATAAACCCTCATCGAAC+AGG | + | tig0025831:4686-4705 | None:intergenic | 40.0% | |
| GCCTGATATCCCCATTATAA+AGG | + | tig0025831:4733-4752 | None:intergenic | 40.0% | |
| ACAGTCATGTCTATACAAGC+AGG | + | tig0025831:4805-4824 | None:intergenic | 40.0% | |
| TGCTTGTATAGACATGACTG+TGG | - | tig0025831:4804-4823 | Msa1425170:intron | 40.0% | |
| TTGTATAGACATGACTGTGG+AGG | - | tig0025831:4807-4826 | Msa1425170:intron | 40.0% | |
| TGTGAAAGTTGTTCCGTTGA+AGG | - | tig0025831:4856-4875 | Msa1425170:intron | 40.0% | |
| !!! | CAGCTGTTTTTGACCTTCAA+CGG | + | tig0025831:4872-4891 | None:intergenic | 40.0% |
| TACAAGACTCGCAGATACAA+AGG | - | tig0025831:4909-4928 | Msa1425170:intron | 40.0% | |
| CTTAAGCTGCCCATTAAAGT+AGG | - | tig0025831:5311-5330 | Msa1425170:CDS | 40.0% | |
| CGAAGCTTTGCCTACTTTAA+TGG | + | tig0025831:5324-5343 | None:intergenic | 40.0% | |
| ATATCTGCATGCTTCTCCTT+AGG | - | tig0025831:5467-5486 | Msa1425170:CDS | 40.0% | |
| CATAACATCGCTTCTACCTT+CGG | + | tig0025831:5655-5674 | None:intergenic | 40.0% | |
| GGTAGAAGCGATGTTATGTA+AGG | - | tig0025831:5657-5676 | Msa1425170:intron | 40.0% | |
| AAGAGGTAGATCTGTAATGG+AGG | - | tig0025831:5686-5705 | Msa1425170:intron | 40.0% | |
| ! | AGAGGTAGATCTGTAATGGA+GGG | - | tig0025831:5687-5706 | Msa1425170:intron | 40.0% |
| !! | ACCCTTGCTTTTGTAATCCT+GGG | - | tig0025831:5711-5730 | Msa1425170:CDS | 40.0% |
| ACCCAGGATTACAAAAGCAA+GGG | + | tig0025831:5715-5734 | None:intergenic | 40.0% | |
| TACCCAGGATTACAAAAGCA+AGG | + | tig0025831:5716-5735 | None:intergenic | 40.0% | |
| !! | TTGCTTTTGTAATCCTGGGT+AGG | - | tig0025831:5715-5734 | Msa1425170:CDS | 40.0% |
| CTGAACAAACTCTGTGACAA+TGG | - | tig0025831:5740-5759 | Msa1425170:CDS | 40.0% | |
| GATTCTCTATCTATCCCCAT+CGG | - | tig0025831:5911-5930 | Msa1425170:five_prime_UTR | 40.0% | |
| ATTCTCTATCTATCCCCATC+GGG | - | tig0025831:5912-5931 | Msa1425170:five_prime_UTR | 40.0% | |
| TGCTTTGTCTTTGAGTGGCA+TGG | + | tig0025831:1792-1811 | None:intergenic | 45.0% | |
| CGTGTGCTTTACACATCACA+CGG | + | tig0025831:1826-1845 | None:intergenic | 45.0% | |
| AGAGAAGTAGAGGGGTTTGT+TGG | + | tig0025831:1859-1878 | None:intergenic | 45.0% | |
| TGACTCTAGGTTTCGCTTTG+GGG | + | tig0025831:2023-2042 | None:intergenic | 45.0% | |
| TCGATCTTTGCCACGTAAGA+GGG | + | tig0025831:2207-2226 | None:intergenic | 45.0% | |
| TTCGATCTTTGCCACGTAAG+AGG | + | tig0025831:2208-2227 | None:intergenic | 45.0% | |
| TCTTACGTGGCAAAGATCGA+AGG | - | tig0025831:2207-2226 | Msa1425170:intron | 45.0% | |
| CTTACGTGGCAAAGATCGAA+GGG | - | tig0025831:2208-2227 | Msa1425170:intron | 45.0% | |
| ACGTTAAAGTTAACGTCCGG+TGG | - | tig0025831:2256-2275 | Msa1425170:intron | 45.0% | |
| TTAACGTCCGGTGGTATTAC+CGG | - | tig0025831:2265-2284 | Msa1425170:intron | 45.0% | |
| TTGAACCGTGAAACTGTCTC+CGG | + | tig0025831:2311-2330 | None:intergenic | 45.0% | |
| GAGACAGTTTCACGGTTCAA+AGG | - | tig0025831:2311-2330 | Msa1425170:intron | 45.0% | |
| ACTCACACTGCAACTCTATC+AGG | + | tig0025831:2495-2514 | None:intergenic | 45.0% | |
| CCTTCTTCTCCAATGCAAAG+GGG | - | tig0025831:2979-2998 | Msa1425170:intron | 45.0% | |
| AAGTGTCTACCCCTTTGCAT+TGG | + | tig0025831:2991-3010 | None:intergenic | 45.0% | |
| GACACTTCGATGTCAAAGTG+AGG | - | tig0025831:3004-3023 | Msa1425170:intron | 45.0% | |
| TTCGATGTCAAAGTGAGGCA+GGG | - | tig0025831:3009-3028 | Msa1425170:intron | 45.0% | |
| CTCTAGTCCTCATCCAAATC+AGG | + | tig0025831:3152-3171 | None:intergenic | 45.0% | |
| CATCAGATCATCAGGGTTGT+AGG | + | tig0025831:3270-3289 | None:intergenic | 45.0% | |
| CTACAACCCTGATGATCTGA+TGG | - | tig0025831:3268-3287 | Msa1425170:intron | 45.0% | |
| CACTGAACCATCAGATCATC+AGG | + | tig0025831:3278-3297 | None:intergenic | 45.0% | |
| TGATCTGATGGTTCAGTGTG+AGG | - | tig0025831:3280-3299 | Msa1425170:intron | 45.0% | |
| GATCTGATGGTTCAGTGTGA+GGG | - | tig0025831:3281-3300 | Msa1425170:intron | 45.0% | |
| !! | CTCTTGTATGTCTGGTTCTG+TGG | - | tig0025831:3406-3425 | Msa1425170:intron | 45.0% |
| AACAAGGGAGAGTAGGTTTG+GGG | + | tig0025831:3698-3717 | None:intergenic | 45.0% | |
| GAACAAGGGAGAGTAGGTTT+GGG | + | tig0025831:3699-3718 | None:intergenic | 45.0% | |
| AGAACAAGGGAGAGTAGGTT+TGG | + | tig0025831:3700-3719 | None:intergenic | 45.0% | |
| CTCGGAGTTAAGGCAGAATT+TGG | + | tig0025831:4211-4230 | None:intergenic | 45.0% | |
| CAAATTCTGCCTTAACTCCG+AGG | - | tig0025831:4209-4228 | Msa1425170:intron | 45.0% | |
| AGAAGAAGAAGAGGAGGAAG+AGG | - | tig0025831:4344-4363 | Msa1425170:intron | 45.0% | |
| ! | GTCCTTTCTTATTCTGGGAG+GGG | - | tig0025831:4389-4408 | Msa1425170:intron | 45.0% |
| TTCCCCTCCCAGAATAAGAA+AGG | + | tig0025831:4394-4413 | None:intergenic | 45.0% | |
| TTTCGGTACCTGTTCGATGA+GGG | - | tig0025831:4675-4694 | Msa1425170:intron | 45.0% | |
| TGCTTGAATGCCTAATGAGC+AGG | - | tig0025831:5352-5371 | Msa1425170:CDS | 45.0% | |
| !! | ATATAGTGGGCCTGCTCATT+AGG | + | tig0025831:5365-5384 | None:intergenic | 45.0% |
| ATGAGCAGGCCCACTATATT+TGG | - | tig0025831:5366-5385 | Msa1425170:CDS | 45.0% | |
| ! | GTTTTCCATGGCTATGCCTA+AGG | + | tig0025831:5486-5505 | None:intergenic | 45.0% |
| ! | GAGGTAGATCTGTAATGGAG+GGG | - | tig0025831:5688-5707 | Msa1425170:intron | 45.0% |
| !! | GACCCTTGCTTTTGTAATCC+TGG | - | tig0025831:5710-5729 | Msa1425170:CDS | 45.0% |
| AGTATCATCCCTGTTTCCCT+TGG | - | tig0025831:5840-5859 | Msa1425170:five_prime_UTR | 45.0% | |
| AACACATCCTCCACTTCCAA+GGG | + | tig0025831:5859-5878 | None:intergenic | 45.0% | |
| AAACACATCCTCCACTTCCA+AGG | + | tig0025831:5860-5879 | None:intergenic | 45.0% | |
| AGTATGAACAAGGACCCGAT+GGG | + | tig0025831:5929-5948 | None:intergenic | 45.0% | |
| GATGTCATCGTGTTCGTAGT+TGG | - | tig0025831:6031-6050 | Msa1425170:five_prime_UTR | 45.0% | |
| !!! | TATAAATTTTTCATTAAAAA+AGG | + | tig0025831:2602-2621 | None:intergenic | 5.0% |
| !!! | TTTTAATGAAAAATTTATAT+TGG | - | tig0025831:2603-2622 | Msa1425170:intron | 5.0% |
| !! | TTTAATGAAAAATTTATATT+GGG | - | tig0025831:2604-2623 | Msa1425170:intron | 5.0% |
| !!! | TGGGGCTTTTGGTTTAGCCA+TGG | + | tig0025831:2005-2024 | None:intergenic | 50.0% |
| !!! | AGGTTTCGCTTTGGGGCTTT+TGG | + | tig0025831:2016-2035 | None:intergenic | 50.0% |
| GAGGGTTTGGATGGATCAGA+TGG | + | tig0025831:2189-2208 | None:intergenic | 50.0% | |
| TCCATCCAAACCCTCTTACG+TGG | - | tig0025831:2194-2213 | Msa1425170:intron | 50.0% | |
| CTTTGCCACGTAAGAGGGTT+TGG | + | tig0025831:2202-2221 | None:intergenic | 50.0% | |
| GAATGAAACCTGTTCCTGCC+TGG | - | tig0025831:2915-2934 | Msa1425170:CDS | 50.0% | |
| CCCCTTTGCATTGGAGAAGA+AGG | + | tig0025831:2982-3001 | None:intergenic | 50.0% | |
| CTTCGATGTCAAAGTGAGGC+AGG | - | tig0025831:3008-3027 | Msa1425170:intron | 50.0% | |
| AGTGAGGCAGGGTGAAGAAT+AGG | - | tig0025831:3020-3039 | Msa1425170:intron | 50.0% | |
| GTGAGGCAGGGTGAAGAATA+GGG | - | tig0025831:3021-3040 | Msa1425170:intron | 50.0% | |
| AGGGTGAAGAATAGGGCTTG+AGG | - | tig0025831:3028-3047 | Msa1425170:intron | 50.0% | |
| GGGTGAAGAATAGGGCTTGA+GGG | - | tig0025831:3029-3048 | Msa1425170:intron | 50.0% | |
| AGGGCTTGAGGGATTAAACC+TGG | - | tig0025831:3040-3059 | Msa1425170:intron | 50.0% | |
| GGGCTTGAGGGATTAAACCT+GGG | - | tig0025831:3041-3060 | Msa1425170:intron | 50.0% | |
| GGCTTGAGGGATTAAACCTG+GGG | - | tig0025831:3042-3061 | Msa1425170:intron | 50.0% | |
| TAAACCTGGGGTTATCCCCT+TGG | - | tig0025831:3054-3073 | Msa1425170:intron | 50.0% | |
| TAATCCAAGGGGATAACCCC+AGG | + | tig0025831:3061-3080 | None:intergenic | 50.0% | |
| TTTACAGCGGAGCTGAACTG+AGG | + | tig0025831:3129-3148 | None:intergenic | 50.0% | |
| GCTCCGCTGTAAACCTGATT+TGG | - | tig0025831:3136-3155 | Msa1425170:intron | 50.0% | |
| !! | AGAGTGCTGCGCTTCAACAA+TGG | - | tig0025831:3168-3187 | Msa1425170:intron | 50.0% |
| TTTACGGGACCTCGGAGTTA+AGG | + | tig0025831:4221-4240 | None:intergenic | 50.0% | |
| GTTTCGGTACCTGTTCGATG+AGG | - | tig0025831:4674-4693 | Msa1425170:intron | 50.0% | |
| CTTCTCCTTAGGCATAGCCA+TGG | - | tig0025831:5478-5497 | Msa1425170:CDS | 50.0% | |
| AACATCGCTTCTACCTTCGG+CGG | + | tig0025831:5652-5671 | None:intergenic | 50.0% | |
| ! | AGTTTGTTCAGCTCCTACCC+AGG | + | tig0025831:5731-5750 | None:intergenic | 50.0% |
| ATCCCTGTTTCCCTTGGAAG+TGG | - | tig0025831:5846-5865 | Msa1425170:five_prime_UTR | 50.0% | |
| CTCCACTTCCAAGGGAAACA+GGG | + | tig0025831:5851-5870 | None:intergenic | 50.0% | |
| GTATGAACAAGGACCCGATG+GGG | + | tig0025831:5928-5947 | None:intergenic | 50.0% | |
| GAGTATGAACAAGGACCCGA+TGG | + | tig0025831:5930-5949 | None:intergenic | 50.0% | |
| GCCACGTAAGAGGGTTTGGA+TGG | + | tig0025831:2198-2217 | None:intergenic | 55.0% | |
| ! | GGGATCGAAGCTGATTCACG+AGG | - | tig0025831:2228-2247 | Msa1425170:intron | 55.0% |
| GCGGAGCTGAACTGAGGATA+AGG | + | tig0025831:3123-3142 | None:intergenic | 55.0% | |
| GGCTGCAGTGACTGGTAAGT+TGG | - | tig0025831:3302-3321 | Msa1425170:intron | 55.0% | |
| AGAGTAGGTTTGGGGAGCAG+GGG | + | tig0025831:3690-3709 | None:intergenic | 55.0% | |
| GAGAGTAGGTTTGGGGAGCA+GGG | + | tig0025831:3691-3710 | None:intergenic | 55.0% | |
| ! | GTGCTACTAGAGTTGCCACC+AGG | + | tig0025831:4434-4453 | None:intergenic | 55.0% |
| TGGATACTAAACGCCGCCGA+AGG | - | tig0025831:5636-5655 | Msa1425170:intron | 55.0% | |
| CCTCCACTTCCAAGGGAAAC+AGG | + | tig0025831:5852-5871 | None:intergenic | 55.0% | |
| CCTGTTTCCCTTGGAAGTGG+AGG | - | tig0025831:5849-5868 | Msa1425170:five_prime_UTR | 55.0% | |
| TACCGGCCGGAGGAGTCAAT+TGG | - | tig0025831:2282-2301 | Msa1425170:intron | 60.0% | |
| ! | CACCAATTGACTCCTCCGGC+CGG | + | tig0025831:2287-2306 | None:intergenic | 60.0% |
| ! | CGGCCACCAATTGACTCCTC+CGG | + | tig0025831:2291-2310 | None:intergenic | 60.0% |
| ! | CGGAGGAGTCAATTGGTGGC+CGG | - | tig0025831:2289-2308 | Msa1425170:intron | 60.0% |
| GGTGGCCGGAGACAGTTTCA+CGG | - | tig0025831:2303-2322 | Msa1425170:intron | 60.0% | |
| CTCTGTATTCCGAGGCAGCC+AGG | + | tig0025831:2936-2955 | None:intergenic | 60.0% | |
| AGTGTGAGGGCTGCAGTGAC+TGG | - | tig0025831:3294-3313 | Msa1425170:intron | 60.0% | |
| GACAGAAGCAGCGAGCCAGA+AGG | + | tig0025831:3638-3657 | None:intergenic | 60.0% | |
| GGAGAGTAGGTTTGGGGAGC+AGG | + | tig0025831:3692-3711 | None:intergenic | 60.0% | |
| CGTCCGGTGGTATTACCGGC+CGG | - | tig0025831:2269-2288 | Msa1425170:intron | 65.0% | |
| CCTCCGGCCGGTAATACCAC+CGG | + | tig0025831:2275-2294 | None:intergenic | 65.0% | |
| CGGCCGGAGGAGTCAATTGG+TGG | - | tig0025831:2285-2304 | Msa1425170:intron | 65.0% | |
| CTGTTCCTGCCTGGCTGCCT+CGG | - | tig0025831:2924-2943 | Msa1425170:CDS | 65.0% | |
| GTATTCCGAGGCAGCCAGGC+AGG | + | tig0025831:2932-2951 | None:intergenic | 65.0% | |
| CCGGTGGTATTACCGGCCGG+AGG | - | tig0025831:2272-2291 | Msa1425170:intron | 70.0% | |
| CGAGGCAGCCAGGCAGGAAC+AGG | + | tig0025831:2926-2945 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025831 | gene | 1718 | 6054 | 1718 | ID=Msa1425170;Name=Msa1425170 |
| tig0025831 | mRNA | 1718 | 6054 | 1718 | ID=Msa1425170-mRNA-1;Parent=Msa1425170;Name=Msa1425170-mRNA-1;_AED=0.08;_eAED=0.08;_QI=286|1|1|1|0.8|0.66|6|340|218 |
| tig0025831 | exon | 1718 | 1947 | 1718 | ID=Msa1425170-mRNA-1:exon:4213;Parent=Msa1425170-mRNA-1 |
| tig0025831 | exon | 2001 | 2137 | 2001 | ID=Msa1425170-mRNA-1:exon:4212;Parent=Msa1425170-mRNA-1 |
| tig0025831 | exon | 2842 | 2977 | 2842 | ID=Msa1425170-mRNA-1:exon:4211;Parent=Msa1425170-mRNA-1 |
| tig0025831 | exon | 4457 | 4525 | 4457 | ID=Msa1425170-mRNA-1:exon:4210;Parent=Msa1425170-mRNA-1 |
| tig0025831 | exon | 5264 | 5609 | 5264 | ID=Msa1425170-mRNA-1:exon:4209;Parent=Msa1425170-mRNA-1 |
| tig0025831 | exon | 5690 | 6054 | 5690 | ID=Msa1425170-mRNA-1:exon:4208;Parent=Msa1425170-mRNA-1 |
| tig0025831 | five_prime_UTR | 5769 | 6054 | 5769 | ID=Msa1425170-mRNA-1:five_prime_utr;Parent=Msa1425170-mRNA-1 |
| tig0025831 | CDS | 5690 | 5768 | 5690 | ID=Msa1425170-mRNA-1:cds;Parent=Msa1425170-mRNA-1 |
| tig0025831 | CDS | 5264 | 5609 | 5264 | ID=Msa1425170-mRNA-1:cds;Parent=Msa1425170-mRNA-1 |
| tig0025831 | CDS | 4457 | 4525 | 4457 | ID=Msa1425170-mRNA-1:cds;Parent=Msa1425170-mRNA-1 |
| tig0025831 | CDS | 2842 | 2977 | 2842 | ID=Msa1425170-mRNA-1:cds;Parent=Msa1425170-mRNA-1 |
| tig0025831 | CDS | 2111 | 2137 | 2111 | ID=Msa1425170-mRNA-1:cds;Parent=Msa1425170-mRNA-1 |
| tig0025831 | three_prime_UTR | 2001 | 2110 | 2001 | ID=Msa1425170-mRNA-1:three_prime_utr;Parent=Msa1425170-mRNA-1 |
| tig0025831 | three_prime_UTR | 1718 | 1947 | 1718 | ID=Msa1425170-mRNA-1:three_prime_utr;Parent=Msa1425170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
