AlfalfaGEDB | Msa1426670

M. sativa cultivar zhongmu-4 / Msa1426670

KEGG: -
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009812 GO:0009813 GO:0009888 GO:0009889 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1901576 GO:1903506 GO:1905392 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426670	XP_024641056.1	89.542	306	21	1	1	306	1	295	0.0	520

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426670	sp\|Q9FX68\|ZWIP6_ARATH	67.181	259	65	5	20	277	12	251	3.10e-116	340

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426670	A0A396HR52	89.542	306	21	1	1	306	1	295	0.0	520

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TFs/TRs:

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Gene ID	Type	Classification
Msa1426670	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426670	MtrunA17_Chr5g0422571	89.542	306	21	1	1	306	1	295	0.0	520
Msa1426670	MtrunA17_Chr1g0198651	70.120	251	60	5	20	268	23	260	8.87e-116	335
Msa1426670	MtrunA17_Chr2g0328921	67.890	218	56	4	67	273	84	298	7.43e-107	313
Msa1426670	MtrunA17_Chr1g0173841	61.538	247	60	4	70	287	144	384	3.74e-106	314
Msa1426670	MtrunA17_Chr7g0258011	62.821	234	60	3	75	287	118	345	9.08e-104	307
Msa1426670	MtrunA17_Chr8g0352011	62.174	230	64	5	75	287	112	335	9.15e-103	304
Msa1426670	MtrunA17_Chr2g0321291	62.009	229	68	5	62	273	68	294	3.47e-100	296
Msa1426670	MtrunA17_Chr4g0026521	63.470	219	64	4	77	282	76	291	1.99e-98	291
Msa1426670	MtrunA17_Chr4g0053341	59.829	234	77	4	38	268	10	229	1.64e-95	281
Msa1426670	MtrunA17_Chr1g0200421	38.596	171	87	8	107	263	226	392	9.87e-25	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426670	AT1G13290.1	67.181	259	65	5	20	277	12	251	3.15e-117	340
Msa1426670	AT3G57670.1	72.632	190	40	2	107	296	199	376	4.25e-101	301
Msa1426670	AT1G51220.1	54.074	270	80	5	58	291	75	336	7.54e-100	297
Msa1426670	AT3G20880.1	63.594	217	46	4	53	263	204	393	1.52e-97	293
Msa1426670	AT1G08290.1	70.056	177	45	1	109	285	164	332	8.19e-96	286
Msa1426670	AT1G34790.1	63.333	210	64	3	75	272	83	291	1.65e-91	274
Msa1426670	AT1G34370.3	38.235	170	91	6	107	263	9	177	5.72e-27	107
Msa1426670	AT1G34370.2	40.397	151	83	5	119	263	238	387	1.64e-26	109
Msa1426670	AT1G34370.1	40.397	151	83	5	119	263	238	387	1.64e-26	109
Msa1426670	AT5G22890.1	39.785	186	94	11	90	263	181	360	1.16e-24	102

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Find 66 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGACCAGAATCTCTAA+GGG	0.555739	tig0026056:+22726	Msa1426670:CDS
AAAGATCATGTTCGTGCTTT+CGG	0.314009	tig0026056:+23021	Msa1426670:CDS
AAAGGACCAGAATCTCTAAG+GGG	0.721082	tig0026056:+22727	Msa1426670:CDS
AAGCATGGAGCGAAGCCATT+CGG	0.440022	tig0026056:+22880	Msa1426670:CDS
ACACACTACAAGAGGAAGCA+TGG	0.591744	tig0026056:+22865	Msa1426670:CDS
ACAGTGCAAGAGAACTGTGT+TGG	0.625514	tig0026056:-22117	Msa1426670:intergenic
ACATAGAGCATCCAAGGTCA+AGG	0.630952	tig0026056:+22815	Msa1426670:CDS
ACCACTTTGCTCATCATCAA+TGG	0.458380	tig0026056:-21953	Msa1426670:intergenic
ACCATTGATGATGAGCAAAG+TGG	0.669448	tig0026056:+21952	Msa1426670:CDS
AGAACAACATAGAGCATCCA+AGG	0.593445	tig0026056:+22809	Msa1426670:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTTCAATTGAGGATATGT+TGG	-	tig0026056:21776-21795	Msa0883930:intergenic	30.0%
TTTAATGTGGAGGATAGTTT+AGG	-	tig0026056:21868-21887	Msa1426670:intergenic	30.0%
AGTAGAAGAGTGATTTAATG+TGG	-	tig0026056:21881-21900	Msa1426670:intergenic	30.0%
TGATGATCAGGTTTACTAAT+AGG	-	tig0026056:22033-22052	Msa1426670:intergenic	30.0%
TAGTAAACCTGATCATCATT+TGG	+	tig0026056:22035-22054	Msa1426670:CDS	30.0%
ATCCAATATTGACCTTGAAT+AGG	-	tig0026056:22069-22088	Msa1426670:intergenic	30.0%
AACGATTCAAGATGGTATTA+GGG	-	tig0026056:22367-22386	Msa1426670:intergenic	30.0%
TAACGATTCAAGATGGTATT+AGG	-	tig0026056:22368-22387	Msa1426670:intergenic	30.0%
ATGTCCTAATGCATACTATA+TGG	+	tig0026056:22497-22516	Msa1426670:intron	30.0%
TCTTCCATATAGTATGCATT+AGG	-	tig0026056:22504-22523	Msa1426670:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0026056	gene	21754	23191	21754	ID=Msa1426670;Name=Msa1426670
tig0026056	mRNA	21754	23191	21754	ID=Msa1426670-mRNA-1;Parent=Msa1426670;Name=Msa1426670-mRNA-1;_AED=0.06;_eAED=0.09;_QI=0\|0\|0\|1\|1\|1\|2\|0\|306
tig0026056	exon	21754	22176	21754	ID=Msa1426670-mRNA-1:exon:5044;Parent=Msa1426670-mRNA-1
tig0026056	exon	22694	23191	22694	ID=Msa1426670-mRNA-1:exon:5045;Parent=Msa1426670-mRNA-1
tig0026056	CDS	21754	22176	21754	ID=Msa1426670-mRNA-1:cds;Parent=Msa1426670-mRNA-1
tig0026056	CDS	22694	23191	22694	ID=Msa1426670-mRNA-1:cds;Parent=Msa1426670-mRNA-1

Gene Sequence

>Msa1426670

ATGCAAGCTCACACATTCTCCAACATATCCTCAATTGAAACTAATAATGACACTGTTGATGAGTCTTCCATTTCACTCTCACTTGGCCCTCCTGGAACACACAACCACAAACCTAAACTATCCTCCACATTAAATCACTCTTCTACTACTCTTCTTCATCATCATCATAATCATAATCACCACCAAAAGCAAAACTTTACCATTGATGATGAGCAAAGTGGTGTAACAGTTGCACTTCACATTGGTCTTCCAACCAACATTTCACAAAACACAACACCTATTAGTAAACCTGATCATCATTTGGCTTCAGCTCCTATTCAAGGTCAATATTGGATTCCTTCACCTGCTCAAATCCTCATTGGACCAACACAGTTCTCTTGCACTGTTTGCAATAAAATGTTCAACCGTTTCAATAATATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTAAGGGGAGTAAAACCAGCTTCATCAATGTTAAGACTTCCTTGCTATTGCTGTGCAGAGGGATGCAAGAACAACATAGAGCATCCAAGGTCAAGGCCACTCAAGGATTTCAGAACACTTCAAACACACTACAAGAGGAAGCATGGAGCGAAGCCATTCGGGTGTAGAAAGTGTGGGAAACCATTTGCAGTTAGAGGTGACTGGAGAACACATGAGAAAAACTGTGGAAAGCTTTGGTTTTGTATCTGTGGATCTGATTTCAAACACAAGAGATCTCTTAAAGATCATGTTCGTGCTTTCGGTGATGGTCATGCTCCACACACCGTCGAGAGTTGTGAAGATCAGGAAGTATTGTTAGGTGATGAATATGACGAGGAATTTGAAGGAGATGAAAATTATGAAGACGATGATGATAATGATAACATCAATCGAATGGTTTTCGGTTTTTAA

Protein sequence

>Msa1426670

MQAHTFSNISSIETNNDTVDESSISLSLGPPGTHNHKPKLSSTLNHSSTTLLHHHHNHNHHQKQNFTIDDEQSGVTVALHIGLPTNISQNTTPISKPDHHLASAPIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGVKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCEDQEVLLGDEYDEEFEGDENYEDDDDNDNINRMVFGF*