AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1426670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1426670 MtrunA17_Chr5g0422571 89.542 306 21 1 1 306 1 295 0.0 520
Msa1426670 MtrunA17_Chr1g0198651 70.120 251 60 5 20 268 23 260 8.87e-116 335
Msa1426670 MtrunA17_Chr2g0328921 67.890 218 56 4 67 273 84 298 7.43e-107 313
Msa1426670 MtrunA17_Chr1g0173841 61.538 247 60 4 70 287 144 384 3.74e-106 314
Msa1426670 MtrunA17_Chr7g0258011 62.821 234 60 3 75 287 118 345 9.08e-104 307
Msa1426670 MtrunA17_Chr8g0352011 62.174 230 64 5 75 287 112 335 9.15e-103 304
Msa1426670 MtrunA17_Chr2g0321291 62.009 229 68 5 62 273 68 294 3.47e-100 296
Msa1426670 MtrunA17_Chr4g0026521 63.470 219 64 4 77 282 76 291 1.99e-98 291
Msa1426670 MtrunA17_Chr4g0053341 59.829 234 77 4 38 268 10 229 1.64e-95 281
Msa1426670 MtrunA17_Chr1g0200421 38.596 171 87 8 107 263 226 392 9.87e-25 103
Msa1426670 MtrunA17_Chr1g0181381 33.163 196 113 5 76 262 10 196 1.72e-23 100
Msa1426670 MtrunA17_Chr8g0382121 40.278 144 80 5 127 266 127 268 1.97e-23 97.8
Msa1426670 MtrunA17_Chr4g0029521 33.000 200 123 6 63 260 4 194 3.46e-23 99.4
Msa1426670 MtrunA17_Chr4g0040571 31.771 192 120 4 84 274 27 208 1.89e-22 97.1
Msa1426670 MtrunA17_Chr2g0320341 38.065 155 88 5 115 263 235 387 3.07e-22 95.9
Msa1426670 MtrunA17_Chr1g0151351 35.057 174 101 6 88 259 33 196 6.99e-22 95.1
Msa1426670 MtrunA17_Chr1g0199101 36.306 157 87 6 112 266 63 208 1.08e-21 95.1
Msa1426670 MtrunA17_Chr7g0263941 33.889 180 106 6 85 262 23 191 1.66e-21 94.0
Msa1426670 MtrunA17_Chr8g0373541 33.005 203 112 7 92 280 26 218 1.68e-21 94.4
Msa1426670 MtrunA17_Chr1g0185121 30.841 214 135 6 65 275 8 211 2.13e-21 94.0
Msa1426670 MtrunA17_Chr8g0342421 34.868 152 86 5 119 268 85 225 2.66e-21 94.0
Msa1426670 MtrunA17_Chr7g0268961 37.500 144 77 6 119 260 45 177 4.00e-21 93.2
Msa1426670 MtrunA17_Chr2g0330171 35.443 158 88 6 107 262 58 203 4.43e-21 93.2
Msa1426670 MtrunA17_Chr2g0326381 38.571 140 76 4 119 257 55 185 8.74e-21 91.7
Msa1426670 MtrunA17_Chr1g0210821 35.374 147 84 4 117 262 65 201 9.68e-21 92.4
Msa1426670 MtrunA17_Chr1g0191991 35.443 158 83 6 113 262 74 220 2.02e-20 91.3
Msa1426670 MtrunA17_Chr1g0162971 37.671 146 78 5 119 262 64 198 2.36e-20 90.9
Msa1426670 MtrunA17_Chr1g0163001 35.294 153 86 5 112 262 59 200 6.85e-20 89.7
Msa1426670 MtrunA17_Chr3g0123941 39.583 144 78 7 127 266 139 277 3.29e-19 86.7
Msa1426670 MtrunA17_Chr3g0141431 33.721 172 102 6 91 260 17 178 3.39e-19 87.0
Msa1426670 MtrunA17_Chr2g0324991 36.806 144 78 7 112 252 8 141 1.92e-17 77.8
Msa1426670 MtrunA17_Chr6g0479921 30.612 147 89 6 117 260 50 186 3.09e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1426670 AT1G13290.1 67.181 259 65 5 20 277 12 251 3.15e-117 340
Msa1426670 AT3G57670.1 72.632 190 40 2 107 296 199 376 4.25e-101 301
Msa1426670 AT1G51220.1 54.074 270 80 5 58 291 75 336 7.54e-100 297
Msa1426670 AT3G20880.1 63.594 217 46 4 53 263 204 393 1.52e-97 293
Msa1426670 AT1G08290.1 70.056 177 45 1 109 285 164 332 8.19e-96 286
Msa1426670 AT1G34790.1 63.333 210 64 3 75 272 83 291 1.65e-91 274
Msa1426670 AT1G34370.3 38.235 170 91 6 107 263 9 177 5.72e-27 107
Msa1426670 AT1G34370.2 40.397 151 83 5 119 263 238 387 1.64e-26 109
Msa1426670 AT1G34370.1 40.397 151 83 5 119 263 238 387 1.64e-26 109
Msa1426670 AT5G22890.1 39.785 186 94 11 90 263 181 360 1.16e-24 102
Msa1426670 AT5G66730.1 32.673 202 121 6 70 267 4 194 1.07e-22 98.2
Msa1426670 AT1G55110.3 37.013 154 85 5 117 268 84 227 4.54e-22 96.3
Msa1426670 AT1G55110.1 37.013 154 85 5 117 268 84 227 4.54e-22 96.3
Msa1426670 AT1G55110.2 37.013 154 85 5 117 268 84 227 4.54e-22 96.3
Msa1426670 AT3G50700.1 32.673 202 123 5 70 268 6 197 9.29e-22 95.1
Msa1426670 AT5G03150.1 37.063 143 80 4 119 260 76 209 1.20e-21 95.1
Msa1426670 AT5G44160.1 33.523 176 106 4 93 267 34 199 1.63e-21 94.7
Msa1426670 AT2G02080.1 37.255 153 83 5 117 267 75 216 1.63e-21 95.1
Msa1426670 AT2G02080.4 37.255 153 83 5 117 267 75 216 1.63e-21 95.1
Msa1426670 AT2G02080.5 37.255 153 83 5 117 267 75 216 1.63e-21 95.1
Msa1426670 AT2G02080.3 37.255 153 83 5 117 267 75 216 1.63e-21 95.1
Msa1426670 AT2G02070.2 37.255 153 83 5 117 267 73 214 2.05e-21 94.7
Msa1426670 AT2G02070.1 37.255 153 83 5 117 267 73 214 2.05e-21 94.7
Msa1426670 AT1G03840.1 33.523 176 106 5 93 267 38 203 2.52e-21 94.4
Msa1426670 AT1G03840.2 34.091 176 103 7 93 267 38 201 4.56e-21 93.6
Msa1426670 AT5G44160.2 36.000 150 85 4 119 267 21 160 5.05e-21 93.2
Msa1426670 AT2G02080.6 37.333 150 81 5 120 267 1 139 6.58e-21 92.8
Msa1426670 AT2G02080.2 37.333 150 81 5 120 267 1 139 6.58e-21 92.8
Msa1426670 AT1G14580.1 36.986 146 79 5 117 260 74 208 3.39e-20 90.9
Msa1426670 AT1G14580.2 36.986 146 79 5 117 260 74 208 3.39e-20 90.9
Msa1426670 AT1G14580.3 36.986 146 79 5 117 260 88 222 3.97e-20 90.9
Msa1426670 AT3G45260.2 35.333 150 87 4 119 267 62 202 5.32e-20 90.1
Msa1426670 AT3G45260.1 35.333 150 87 4 119 267 62 202 5.32e-20 90.1
Msa1426670 AT5G60470.2 32.227 211 122 7 56 262 9 202 6.03e-20 90.1
Msa1426670 AT5G60470.3 32.227 211 122 7 56 262 5 198 7.04e-20 89.7
Msa1426670 AT5G60470.1 37.241 145 81 5 119 262 58 193 8.25e-20 89.7
Msa1426670 AT3G13810.4 34.615 156 92 4 112 266 86 232 9.65e-20 89.7
Msa1426670 AT3G13810.1 34.615 156 92 4 112 266 86 232 9.65e-20 89.7
Msa1426670 AT3G13810.2 34.615 156 92 4 112 266 87 233 9.67e-20 89.7
Msa1426670 AT3G13810.5 35.099 151 88 4 117 266 86 227 1.03e-19 89.7
Msa1426670 AT3G13810.3 34.615 156 92 4 112 266 73 219 1.03e-19 89.7
Msa1426670 AT3G13810.6 35.099 151 88 4 117 266 72 213 1.10e-19 89.4
Msa1426670 AT4G02670.2 34.211 152 90 4 112 262 71 213 8.55e-19 86.3
Msa1426670 AT4G02670.1 34.211 152 90 4 112 262 69 211 8.94e-19 86.3
Msa1426670 AT1G25250.3 30.216 139 88 4 117 253 54 185 1.65e-11 64.7
Msa1426670 AT1G25250.1 30.216 139 88 4 117 253 31 162 1.68e-11 64.7

Find 66 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACTCCCCTTAGAGATTC+TGG 0.179929 tig0026056:-22733 Msa1426670:intergenic
CTCCTATTCAAGGTCAATAT+TGG 0.253994 tig0026056:+22064 Msa1426670:CDS
AAAGATCATGTTCGTGCTTT+CGG 0.314009 tig0026056:+23021 Msa1426670:CDS
GGTTTGTGGTTGTGTGTTCC+AGG 0.317646 tig0026056:-21844 Msa1426670:intergenic
GAAAAGGACCAGAATCTCTA+AGG 0.322420 tig0026056:+22725 Msa1426670:CDS
TGATGATCAGGTTTACTAAT+AGG 0.342578 tig0026056:-22030 Msa1426670:intergenic
TCACTCTCACTTGGCCCTCC+TGG 0.348650 tig0026056:+21826 Msa1426670:CDS
TTTAATGTGGAGGATAGTTT+AGG 0.370427 tig0026056:-21865 Msa1426670:intergenic
TAGTAAACCTGATCATCATT+TGG 0.397302 tig0026056:+22035 Msa1426670:CDS
AGCATGGAGCGAAGCCATTC+GGG 0.401651 tig0026056:+22881 Msa1426670:CDS
TGGAGGATAGTTTAGGTTTG+TGG 0.408461 tig0026056:-21858 Msa1426670:intergenic
GGGAAACCATTTGCAGTTAG+AGG 0.410419 tig0026056:+22916 Msa1426670:CDS
GAAGATCAGGAAGTATTGTT+AGG 0.411354 tig0026056:+23078 Msa1426670:CDS
TTGGCTTCAGCTCCTATTCA+AGG 0.424273 tig0026056:+22054 Msa1426670:CDS
AAGCATGGAGCGAAGCCATT+CGG 0.440022 tig0026056:+22880 Msa1426670:CDS
CATGTTCGTGCTTTCGGTGA+TGG 0.445219 tig0026056:+23027 Msa1426670:CDS
GTCATTATTAGTTTCAATTG+AGG 0.447268 tig0026056:-21782 Msa1426670:intergenic
AGTTTCAATTGAGGATATGT+TGG 0.454073 tig0026056:-21773 Msa1426670:intergenic
ACCACTTTGCTCATCATCAA+TGG 0.458380 tig0026056:-21953 Msa1426670:intergenic
CGTCGAGAGTTGTGAAGATC+AGG 0.460359 tig0026056:+23065 Msa1426670:CDS
TCACCTGCTCAAATCCTCAT+TGG 0.461696 tig0026056:+22093 Msa1426670:CDS
CAACCGTTTCAATAATATGC+AGG 0.466033 tig0026056:+22155 Msa1426670:CDS
CAGTCACCTCTAACTGCAAA+TGG 0.466119 tig0026056:-22922 Msa1426670:intergenic
AGTAGAAGAGTGATTTAATG+TGG 0.470478 tig0026056:-21878 Msa1426670:intergenic
TCTTCCATTTCACTCTCACT+TGG 0.472544 tig0026056:+21817 Msa1426670:CDS
GCTGAAGCCAAATGATGATC+AGG 0.472827 tig0026056:-22042 Msa1426670:intergenic
ATCCAATATTGACCTTGAAT+AGG 0.474167 tig0026056:-22066 Msa1426670:intergenic
TAACCTGCATATTATTGAAA+CGG 0.475929 tig0026056:-22158 Msa1426670:intergenic
TCCTTGAGTGGCCTTGACCT+TGG 0.476401 tig0026056:-22826 Msa1426670:intergenic
AGTCTTAACATTGATGAAGC+TGG 0.481814 tig0026056:-22757 Msa1426670:intergenic
AGGGCCAAGTGAGAGTGAAA+TGG 0.483147 tig0026056:-21821 Msa1426670:intergenic
GTATATATCAGATGCATATG+TGG 0.492007 tig0026056:+22683 Msa1426670:intron
CCTTGCTATTGCTGTGCAGA+GGG 0.509164 tig0026056:+22781 Msa1426670:CDS
TATATATCAGATGCATATGT+GGG 0.512415 tig0026056:+22684 Msa1426670:intron
TCCTTGCTATTGCTGTGCAG+AGG 0.519467 tig0026056:+22780 Msa1426670:CDS
CAGATGCATATGTGGGGACA+TGG 0.520986 tig0026056:+22691 Msa1426670:intron
CATGGATCACAATACAGAAA+AGG 0.532079 tig0026056:+22709 Msa1426670:CDS
GAATATGACGAGGAATTTGA+AGG 0.538705 tig0026056:+23105 Msa1426670:CDS
GGAGAATGTGTGAGCTTGCA+TGG 0.548279 tig0026056:-21752 Msa1426670:intergenic
CACTTCAAACACACTACAAG+AGG 0.550716 tig0026056:+22857 Msa1426670:CDS
TGTGGTTGTGTGTTCCAGGA+GGG 0.551458 tig0026056:-21840 Msa1426670:intergenic
TCACAACTCTCGACGGTGTG+TGG 0.553384 tig0026056:-23057 Msa1426670:intergenic
AAAAGGACCAGAATCTCTAA+GGG 0.555739 tig0026056:+22726 Msa1426670:CDS
TCCAAGGTCAAGGCCACTCA+AGG 0.567553 tig0026056:+22825 Msa1426670:CDS
CATTTGCAGTTAGAGGTGAC+TGG 0.568578 tig0026056:+22923 Msa1426670:CDS
CCCTCTGCACAGCAATAGCA+AGG 0.583701 tig0026056:-22781 Msa1426670:intergenic
ATGAGGATTTGAGCAGGTGA+AGG 0.587509 tig0026056:-22090 Msa1426670:intergenic
CCATTCGGGTGTAGAAAGTG+TGG 0.590964 tig0026056:+22895 Msa1426670:CDS
ACACACTACAAGAGGAAGCA+TGG 0.591744 tig0026056:+22865 Msa1426670:CDS
AGAACAACATAGAGCATCCA+AGG 0.593445 tig0026056:+22809 Msa1426670:CDS
CCACACTTTCTACACCCGAA+TGG 0.593700 tig0026056:-22895 Msa1426670:intergenic
TAATGATAACATCAATCGAA+TGG 0.599548 tig0026056:+23155 Msa1426670:CDS
CTGATCTTCACAACTCTCGA+CGG 0.614391 tig0026056:-23064 Msa1426670:intergenic
ACAGTGCAAGAGAACTGTGT+TGG 0.625514 tig0026056:-22117 Msa1426670:intergenic
AGAAGAGTGATTTAATGTGG+AGG 0.629008 tig0026056:-21875 Msa1426670:intergenic
GGTCCAATGAGGATTTGAGC+AGG 0.629341 tig0026056:-22096 Msa1426670:intergenic
ACATAGAGCATCCAAGGTCA+AGG 0.630952 tig0026056:+22815 Msa1426670:CDS
TTGTGGTTGTGTGTTCCAGG+AGG 0.639378 tig0026056:-21841 Msa1426670:intergenic
AGAACTGTGTTGGTCCAATG+AGG 0.645090 tig0026056:-22107 Msa1426670:intergenic
AGTGTTCTGAAATCCTTGAG+TGG 0.647415 tig0026056:-22838 Msa1426670:intergenic
GTAACAGTTGCACTTCACAT+TGG 0.647512 tig0026056:+21976 Msa1426670:CDS
CATTCGGGTGTAGAAAGTGT+GGG 0.658306 tig0026056:+22896 Msa1426670:CDS
ACCATTGATGATGAGCAAAG+TGG 0.669448 tig0026056:+21952 Msa1426670:CDS
GTTAGGTGATGAATATGACG+AGG 0.714430 tig0026056:+23095 Msa1426670:CDS
ATATATCAGATGCATATGTG+GGG 0.720271 tig0026056:+22685 Msa1426670:intron
AAAGGACCAGAATCTCTAAG+GGG 0.721082 tig0026056:+22727 Msa1426670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAAAAAGTTCACTAA+AGG - tig0026056:22311-22330 Msa1426670:intergenic 20.0%
!!! ATTGTTCATTTTTATCTTCT+AGG - tig0026056:22557-22576 Msa1426670:intergenic 20.0%
!! CAAAAAAAAAAGTTCACTAA+AGG - tig0026056:22311-22330 Msa1426670:intergenic 20.0%
!!! ATTGTTCATTTTTATCTTCT+AGG - tig0026056:22557-22576 Msa1426670:intergenic 20.0%
!! GTCATTATTAGTTTCAATTG+AGG - tig0026056:21785-21804 Msa0883930:intergenic 25.0%
! TAACCTGCATATTATTGAAA+CGG - tig0026056:22161-22180 Msa1426670:intergenic 25.0%
!!! CTAGTTCTTGACAAATTTTA+TGG - tig0026056:22437-22456 Msa1426670:intergenic 25.0%
!!! AGGAGTATTGACAAATTTTT+TGG - tig0026056:22474-22493 Msa1426670:intergenic 25.0%
!! AAATGACAAAATTTTGTGCT+TGG - tig0026056:22616-22635 Msa1426670:intergenic 25.0%
! TATATATCAGATGCATATGT+GGG + tig0026056:22684-22703 Msa1426670:intron 25.0%
! TAATGATAACATCAATCGAA+TGG + tig0026056:23155-23174 Msa1426670:CDS 25.0%
!! GTCATTATTAGTTTCAATTG+AGG - tig0026056:21785-21804 Msa1426670:intergenic 25.0%
! TAACCTGCATATTATTGAAA+CGG - tig0026056:22161-22180 Msa1426670:intergenic 25.0%
!!! CTAGTTCTTGACAAATTTTA+TGG - tig0026056:22437-22456 Msa1426670:intergenic 25.0%
!!! AGGAGTATTGACAAATTTTT+TGG - tig0026056:22474-22493 Msa1426670:intergenic 25.0%
!! AAATGACAAAATTTTGTGCT+TGG - tig0026056:22616-22635 Msa1426670:intergenic 25.0%
! TATATATCAGATGCATATGT+GGG + tig0026056:22684-22703 Msa1426670:intron 25.0%
! TAATGATAACATCAATCGAA+TGG + tig0026056:23155-23174 Msa1426670:CDS 25.0%
AGTTTCAATTGAGGATATGT+TGG - tig0026056:21776-21795 Msa0883930:intergenic 30.0%
TTTAATGTGGAGGATAGTTT+AGG - tig0026056:21868-21887 Msa1426670:intergenic 30.0%
AGTAGAAGAGTGATTTAATG+TGG - tig0026056:21881-21900 Msa1426670:intergenic 30.0%
! CAATGGTAAAGTTTTGCTTT+TGG - tig0026056:21939-21958 Msa1426670:intergenic 30.0%
! TGTTGTGTTTTGTGAAATGT+TGG - tig0026056:22010-22029 Msa1426670:intergenic 30.0%
TGATGATCAGGTTTACTAAT+AGG - tig0026056:22033-22052 Msa1426670:intergenic 30.0%
TAGTAAACCTGATCATCATT+TGG + tig0026056:22035-22054 Msa1426670:CDS 30.0%
ATCCAATATTGACCTTGAAT+AGG - tig0026056:22069-22088 Msa1426670:intergenic 30.0%
AACGATTCAAGATGGTATTA+GGG - tig0026056:22367-22386 Msa1426670:intergenic 30.0%
TAACGATTCAAGATGGTATT+AGG - tig0026056:22368-22387 Msa1426670:intergenic 30.0%
! AAAGTGTTAACGATTCAAGA+TGG - tig0026056:22375-22394 Msa1426670:intergenic 30.0%
ATGTCCTAATGCATACTATA+TGG + tig0026056:22497-22516 Msa1426670:intron 30.0%
TCTTCCATATAGTATGCATT+AGG - tig0026056:22504-22523 Msa1426670:intergenic 30.0%
GTATATATCAGATGCATATG+TGG + tig0026056:22683-22702 Msa1426670:intron 30.0%
ATATATCAGATGCATATGTG+GGG + tig0026056:22685-22704 Msa1426670:intron 30.0%
! AACATCAATCGAATGGTTTT+CGG + tig0026056:23162-23181 Msa1426670:CDS 30.0%
AGTTTCAATTGAGGATATGT+TGG - tig0026056:21776-21795 Msa1426670:intergenic 30.0%
TTTAATGTGGAGGATAGTTT+AGG - tig0026056:21868-21887 Msa1426670:intergenic 30.0%
AGTAGAAGAGTGATTTAATG+TGG - tig0026056:21881-21900 Msa1426670:intergenic 30.0%
! CAATGGTAAAGTTTTGCTTT+TGG - tig0026056:21939-21958 Msa1426670:intergenic 30.0%
! TGTTGTGTTTTGTGAAATGT+TGG - tig0026056:22010-22029 Msa1426670:intergenic 30.0%
TGATGATCAGGTTTACTAAT+AGG - tig0026056:22033-22052 Msa1426670:intergenic 30.0%
TAGTAAACCTGATCATCATT+TGG + tig0026056:22035-22054 Msa1426670:CDS 30.0%
ATCCAATATTGACCTTGAAT+AGG - tig0026056:22069-22088 Msa1426670:intergenic 30.0%
AACGATTCAAGATGGTATTA+GGG - tig0026056:22367-22386 Msa1426670:intergenic 30.0%
TAACGATTCAAGATGGTATT+AGG - tig0026056:22368-22387 Msa1426670:intergenic 30.0%
! AAAGTGTTAACGATTCAAGA+TGG - tig0026056:22375-22394 Msa1426670:intergenic 30.0%
ATGTCCTAATGCATACTATA+TGG + tig0026056:22497-22516 Msa1426670:intron 30.0%
TCTTCCATATAGTATGCATT+AGG - tig0026056:22504-22523 Msa1426670:intergenic 30.0%
GTATATATCAGATGCATATG+TGG + tig0026056:22683-22702 Msa1426670:intron 30.0%
ATATATCAGATGCATATGTG+GGG + tig0026056:22685-22704 Msa1426670:intron 30.0%
! AACATCAATCGAATGGTTTT+CGG + tig0026056:23162-23181 Msa1426670:CDS 30.0%
AGAAGAGTGATTTAATGTGG+AGG - tig0026056:21878-21897 Msa1426670:intergenic 35.0%
!! TGGTAAAGTTTTGCTTTTGG+TGG - tig0026056:21936-21955 Msa1426670:intergenic 35.0%
! GTGTTTTGTGAAATGTTGGT+TGG - tig0026056:22006-22025 Msa1426670:intergenic 35.0%
CTCCTATTCAAGGTCAATAT+TGG + tig0026056:22064-22083 Msa1426670:CDS 35.0%
CAACCGTTTCAATAATATGC+AGG + tig0026056:22155-22174 Msa1426670:CDS 35.0%
TGTATCTTGAACTACTAGCT+AGG - tig0026056:22238-22257 Msa1426670:intergenic 35.0%
AGTATGCATTAGGACATTGA+AGG - tig0026056:22494-22513 Msa1426670:intergenic 35.0%
CATGGATCACAATACAGAAA+AGG + tig0026056:22709-22728 Msa1426670:CDS 35.0%
AAAAGGACCAGAATCTCTAA+GGG + tig0026056:22726-22745 Msa1426670:CDS 35.0%
AGTCTTAACATTGATGAAGC+TGG - tig0026056:22760-22779 Msa1426670:intergenic 35.0%
AGAACACATGAGAAAAACTG+TGG + tig0026056:22946-22965 Msa1426670:CDS 35.0%
AGAAAAACTGTGGAAAGCTT+TGG + tig0026056:22956-22975 Msa1426670:CDS 35.0%
!!! AAGCTTTGGTTTTGTATCTG+TGG + tig0026056:22970-22989 Msa1426670:CDS 35.0%
AAAGATCATGTTCGTGCTTT+CGG + tig0026056:23021-23040 Msa1426670:CDS 35.0%
!! GAAGATCAGGAAGTATTGTT+AGG + tig0026056:23078-23097 Msa1426670:CDS 35.0%
GAATATGACGAGGAATTTGA+AGG + tig0026056:23105-23124 Msa1426670:CDS 35.0%
AGAAGAGTGATTTAATGTGG+AGG - tig0026056:21878-21897 Msa1426670:intergenic 35.0%
!! TGGTAAAGTTTTGCTTTTGG+TGG - tig0026056:21936-21955 Msa1426670:intergenic 35.0%
! GTGTTTTGTGAAATGTTGGT+TGG - tig0026056:22006-22025 Msa1426670:intergenic 35.0%
CTCCTATTCAAGGTCAATAT+TGG + tig0026056:22064-22083 Msa1426670:CDS 35.0%
CAACCGTTTCAATAATATGC+AGG + tig0026056:22155-22174 Msa1426670:CDS 35.0%
TGTATCTTGAACTACTAGCT+AGG - tig0026056:22238-22257 Msa1426670:intergenic 35.0%
AGTATGCATTAGGACATTGA+AGG - tig0026056:22494-22513 Msa1426670:intergenic 35.0%
CATGGATCACAATACAGAAA+AGG + tig0026056:22709-22728 Msa1426670:CDS 35.0%
AAAAGGACCAGAATCTCTAA+GGG + tig0026056:22726-22745 Msa1426670:CDS 35.0%
AGTCTTAACATTGATGAAGC+TGG - tig0026056:22760-22779 Msa1426670:intergenic 35.0%
AGAACACATGAGAAAAACTG+TGG + tig0026056:22946-22965 Msa1426670:CDS 35.0%
AGAAAAACTGTGGAAAGCTT+TGG + tig0026056:22956-22975 Msa1426670:CDS 35.0%
!!! AAGCTTTGGTTTTGTATCTG+TGG + tig0026056:22970-22989 Msa1426670:CDS 35.0%
AAAGATCATGTTCGTGCTTT+CGG + tig0026056:23021-23040 Msa1426670:CDS 35.0%
!! GAAGATCAGGAAGTATTGTT+AGG + tig0026056:23078-23097 Msa1426670:CDS 35.0%
GAATATGACGAGGAATTTGA+AGG + tig0026056:23105-23124 Msa1426670:CDS 35.0%
TCTTCCATTTCACTCTCACT+TGG + tig0026056:21817-21836 Msa1426670:CDS 40.0%
! TGGAGGATAGTTTAGGTTTG+TGG - tig0026056:21861-21880 Msa1426670:intergenic 40.0%
!! ACCATTGATGATGAGCAAAG+TGG + tig0026056:21952-21971 Msa1426670:CDS 40.0%
ACCACTTTGCTCATCATCAA+TGG - tig0026056:21956-21975 Msa1426670:intergenic 40.0%
GTAACAGTTGCACTTCACAT+TGG + tig0026056:21976-21995 Msa1426670:CDS 40.0%
AGCTAGGCAATAGACAGTTT+AGG - tig0026056:22222-22241 Msa1426670:intergenic 40.0%
GAAAAGGACCAGAATCTCTA+AGG + tig0026056:22725-22744 Msa1426670:CDS 40.0%
AAAGGACCAGAATCTCTAAG+GGG + tig0026056:22727-22746 Msa1426670:CDS 40.0%
TTTACTCCCCTTAGAGATTC+TGG - tig0026056:22736-22755 Msa1426670:intergenic 40.0%
! AGAACAACATAGAGCATCCA+AGG + tig0026056:22809-22828 Msa1426670:CDS 40.0%
!! AGTGTTCTGAAATCCTTGAG+TGG - tig0026056:22841-22860 Msa1426670:intergenic 40.0%
CACTTCAAACACACTACAAG+AGG + tig0026056:22857-22876 Msa1426670:CDS 40.0%
GTTAGGTGATGAATATGACG+AGG + tig0026056:23095-23114 Msa1426670:CDS 40.0%
TCTTCCATTTCACTCTCACT+TGG + tig0026056:21817-21836 Msa1426670:CDS 40.0%
! TGGAGGATAGTTTAGGTTTG+TGG - tig0026056:21861-21880 Msa1426670:intergenic 40.0%
!! ACCATTGATGATGAGCAAAG+TGG + tig0026056:21952-21971 Msa1426670:CDS 40.0%
ACCACTTTGCTCATCATCAA+TGG - tig0026056:21956-21975 Msa1426670:intergenic 40.0%
GTAACAGTTGCACTTCACAT+TGG + tig0026056:21976-21995 Msa1426670:CDS 40.0%
AGCTAGGCAATAGACAGTTT+AGG - tig0026056:22222-22241 Msa1426670:intergenic 40.0%
GAAAAGGACCAGAATCTCTA+AGG + tig0026056:22725-22744 Msa1426670:CDS 40.0%
AAAGGACCAGAATCTCTAAG+GGG + tig0026056:22727-22746 Msa1426670:CDS 40.0%
TTTACTCCCCTTAGAGATTC+TGG - tig0026056:22736-22755 Msa1426670:intergenic 40.0%
! AGAACAACATAGAGCATCCA+AGG + tig0026056:22809-22828 Msa1426670:CDS 40.0%
!! AGTGTTCTGAAATCCTTGAG+TGG - tig0026056:22841-22860 Msa1426670:intergenic 40.0%
CACTTCAAACACACTACAAG+AGG + tig0026056:22857-22876 Msa1426670:CDS 40.0%
GTTAGGTGATGAATATGACG+AGG + tig0026056:23095-23114 Msa1426670:CDS 40.0%
GCTGAAGCCAAATGATGATC+AGG - tig0026056:22045-22064 Msa1426670:intergenic 45.0%
TTGGCTTCAGCTCCTATTCA+AGG + tig0026056:22054-22073 Msa1426670:CDS 45.0%
ATGAGGATTTGAGCAGGTGA+AGG - tig0026056:22093-22112 Msa1426670:intergenic 45.0%
TCACCTGCTCAAATCCTCAT+TGG + tig0026056:22093-22112 Msa1426670:CDS 45.0%
! AGAACTGTGTTGGTCCAATG+AGG - tig0026056:22110-22129 Msa1426670:intergenic 45.0%
ACAGTGCAAGAGAACTGTGT+TGG - tig0026056:22120-22139 Msa1426670:intergenic 45.0%
! ACATAGAGCATCCAAGGTCA+AGG + tig0026056:22815-22834 Msa1426670:CDS 45.0%
ACACACTACAAGAGGAAGCA+TGG + tig0026056:22865-22884 Msa1426670:CDS 45.0%
! CATTCGGGTGTAGAAAGTGT+GGG + tig0026056:22896-22915 Msa1426670:CDS 45.0%
GGGAAACCATTTGCAGTTAG+AGG + tig0026056:22916-22935 Msa1426670:CDS 45.0%
CAGTCACCTCTAACTGCAAA+TGG - tig0026056:22925-22944 Msa1426670:intergenic 45.0%
CATTTGCAGTTAGAGGTGAC+TGG + tig0026056:22923-22942 Msa1426670:CDS 45.0%
CTGATCTTCACAACTCTCGA+CGG - tig0026056:23067-23086 Msa1426670:intergenic 45.0%
GCTGAAGCCAAATGATGATC+AGG - tig0026056:22045-22064 Msa1426670:intergenic 45.0%
TTGGCTTCAGCTCCTATTCA+AGG + tig0026056:22054-22073 Msa1426670:CDS 45.0%
ATGAGGATTTGAGCAGGTGA+AGG - tig0026056:22093-22112 Msa1426670:intergenic 45.0%
TCACCTGCTCAAATCCTCAT+TGG + tig0026056:22093-22112 Msa1426670:CDS 45.0%
! AGAACTGTGTTGGTCCAATG+AGG - tig0026056:22110-22129 Msa1426670:intergenic 45.0%
ACAGTGCAAGAGAACTGTGT+TGG - tig0026056:22120-22139 Msa1426670:intergenic 45.0%
! ACATAGAGCATCCAAGGTCA+AGG + tig0026056:22815-22834 Msa1426670:CDS 45.0%
ACACACTACAAGAGGAAGCA+TGG + tig0026056:22865-22884 Msa1426670:CDS 45.0%
! CATTCGGGTGTAGAAAGTGT+GGG + tig0026056:22896-22915 Msa1426670:CDS 45.0%
GGGAAACCATTTGCAGTTAG+AGG + tig0026056:22916-22935 Msa1426670:CDS 45.0%
CAGTCACCTCTAACTGCAAA+TGG - tig0026056:22925-22944 Msa1426670:intergenic 45.0%
CATTTGCAGTTAGAGGTGAC+TGG + tig0026056:22923-22942 Msa1426670:CDS 45.0%
CTGATCTTCACAACTCTCGA+CGG - tig0026056:23067-23086 Msa1426670:intergenic 45.0%
!!! TTTTTATAAATAAATATTAG+TGG + tig0026056:22396-22415 Msa1426670:intron 5.0%
!!! TTTTTATAAATAAATATTAG+TGG + tig0026056:22396-22415 Msa1426670:intron 5.0%
AGGGCCAAGTGAGAGTGAAA+TGG - tig0026056:21824-21843 Msa1426670:intergenic 50.0%
TGTGGTTGTGTGTTCCAGGA+GGG - tig0026056:21843-21862 Msa1426670:intergenic 50.0%
TTGTGGTTGTGTGTTCCAGG+AGG - tig0026056:21844-21863 Msa1426670:intergenic 50.0%
GGTTTGTGGTTGTGTGTTCC+AGG - tig0026056:21847-21866 Msa1426670:intergenic 50.0%
GGTCCAATGAGGATTTGAGC+AGG - tig0026056:22099-22118 Msa1426670:intergenic 50.0%
CAGATGCATATGTGGGGACA+TGG + tig0026056:22691-22710 Msa1426670:intron 50.0%
!! TCCTTGCTATTGCTGTGCAG+AGG + tig0026056:22780-22799 Msa1426670:CDS 50.0%
!! CCTTGCTATTGCTGTGCAGA+GGG + tig0026056:22781-22800 Msa1426670:CDS 50.0%
AAGCATGGAGCGAAGCCATT+CGG + tig0026056:22880-22899 Msa1426670:CDS 50.0%
CCACACTTTCTACACCCGAA+TGG - tig0026056:22898-22917 Msa1426670:intergenic 50.0%
CCATTCGGGTGTAGAAAGTG+TGG + tig0026056:22895-22914 Msa1426670:CDS 50.0%
CATGTTCGTGCTTTCGGTGA+TGG + tig0026056:23027-23046 Msa1426670:CDS 50.0%
CGTCGAGAGTTGTGAAGATC+AGG + tig0026056:23065-23084 Msa1426670:CDS 50.0%
AGGGCCAAGTGAGAGTGAAA+TGG - tig0026056:21824-21843 Msa1426670:intergenic 50.0%
TGTGGTTGTGTGTTCCAGGA+GGG - tig0026056:21843-21862 Msa1426670:intergenic 50.0%
TTGTGGTTGTGTGTTCCAGG+AGG - tig0026056:21844-21863 Msa1426670:intergenic 50.0%
GGTTTGTGGTTGTGTGTTCC+AGG - tig0026056:21847-21866 Msa1426670:intergenic 50.0%
GGTCCAATGAGGATTTGAGC+AGG - tig0026056:22099-22118 Msa1426670:intergenic 50.0%
CAGATGCATATGTGGGGACA+TGG + tig0026056:22691-22710 Msa1426670:intron 50.0%
!! TCCTTGCTATTGCTGTGCAG+AGG + tig0026056:22780-22799 Msa1426670:CDS 50.0%
!! CCTTGCTATTGCTGTGCAGA+GGG + tig0026056:22781-22800 Msa1426670:CDS 50.0%
AAGCATGGAGCGAAGCCATT+CGG + tig0026056:22880-22899 Msa1426670:CDS 50.0%
CCACACTTTCTACACCCGAA+TGG - tig0026056:22898-22917 Msa1426670:intergenic 50.0%
CCATTCGGGTGTAGAAAGTG+TGG + tig0026056:22895-22914 Msa1426670:CDS 50.0%
CATGTTCGTGCTTTCGGTGA+TGG + tig0026056:23027-23046 Msa1426670:CDS 50.0%
CGTCGAGAGTTGTGAAGATC+AGG + tig0026056:23065-23084 Msa1426670:CDS 50.0%
CCCTCTGCACAGCAATAGCA+AGG - tig0026056:22784-22803 Msa1426670:intergenic 55.0%
TCCAAGGTCAAGGCCACTCA+AGG + tig0026056:22825-22844 Msa1426670:CDS 55.0%
! TCCTTGAGTGGCCTTGACCT+TGG - tig0026056:22829-22848 Msa1426670:intergenic 55.0%
AGCATGGAGCGAAGCCATTC+GGG + tig0026056:22881-22900 Msa1426670:CDS 55.0%
TCACAACTCTCGACGGTGTG+TGG - tig0026056:23060-23079 Msa1426670:intergenic 55.0%
CCCTCTGCACAGCAATAGCA+AGG - tig0026056:22784-22803 Msa1426670:intergenic 55.0%
TCCAAGGTCAAGGCCACTCA+AGG + tig0026056:22825-22844 Msa1426670:CDS 55.0%
! TCCTTGAGTGGCCTTGACCT+TGG - tig0026056:22829-22848 Msa1426670:intergenic 55.0%
AGCATGGAGCGAAGCCATTC+GGG + tig0026056:22881-22900 Msa1426670:CDS 55.0%
TCACAACTCTCGACGGTGTG+TGG - tig0026056:23060-23079 Msa1426670:intergenic 55.0%
TCACTCTCACTTGGCCCTCC+TGG + tig0026056:21826-21845 Msa1426670:CDS 60.0%
TCACTCTCACTTGGCCCTCC+TGG + tig0026056:21826-21845 Msa1426670:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0026056 gene 21754 23191 21754 ID=Msa1426670;Name=Msa1426670
tig0026056 mRNA 21754 23191 21754 ID=Msa1426670-mRNA-1;Parent=Msa1426670;Name=Msa1426670-mRNA-1;_AED=0.06;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|306
tig0026056 exon 21754 22176 21754 ID=Msa1426670-mRNA-1:exon:5044;Parent=Msa1426670-mRNA-1
tig0026056 exon 22694 23191 22694 ID=Msa1426670-mRNA-1:exon:5045;Parent=Msa1426670-mRNA-1
tig0026056 CDS 21754 22176 21754 ID=Msa1426670-mRNA-1:cds;Parent=Msa1426670-mRNA-1
tig0026056 CDS 22694 23191 22694 ID=Msa1426670-mRNA-1:cds;Parent=Msa1426670-mRNA-1
Gene Sequence

>Msa1426670

ATGCAAGCTCACACATTCTCCAACATATCCTCAATTGAAACTAATAATGACACTGTTGATGAGTCTTCCATTTCACTCTCACTTGGCCCTCCTGGAACACACAACCACAAACCTAAACTATCCTCCACATTAAATCACTCTTCTACTACTCTTCTTCATCATCATCATAATCATAATCACCACCAAAAGCAAAACTTTACCATTGATGATGAGCAAAGTGGTGTAACAGTTGCACTTCACATTGGTCTTCCAACCAACATTTCACAAAACACAACACCTATTAGTAAACCTGATCATCATTTGGCTTCAGCTCCTATTCAAGGTCAATATTGGATTCCTTCACCTGCTCAAATCCTCATTGGACCAACACAGTTCTCTTGCACTGTTTGCAATAAAATGTTCAACCGTTTCAATAATATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTAAGGGGAGTAAAACCAGCTTCATCAATGTTAAGACTTCCTTGCTATTGCTGTGCAGAGGGATGCAAGAACAACATAGAGCATCCAAGGTCAAGGCCACTCAAGGATTTCAGAACACTTCAAACACACTACAAGAGGAAGCATGGAGCGAAGCCATTCGGGTGTAGAAAGTGTGGGAAACCATTTGCAGTTAGAGGTGACTGGAGAACACATGAGAAAAACTGTGGAAAGCTTTGGTTTTGTATCTGTGGATCTGATTTCAAACACAAGAGATCTCTTAAAGATCATGTTCGTGCTTTCGGTGATGGTCATGCTCCACACACCGTCGAGAGTTGTGAAGATCAGGAAGTATTGTTAGGTGATGAATATGACGAGGAATTTGAAGGAGATGAAAATTATGAAGACGATGATGATAATGATAACATCAATCGAATGGTTTTCGGTTTTTAA

Protein sequence

>Msa1426670

MQAHTFSNISSIETNNDTVDESSISLSLGPPGTHNHKPKLSSTLNHSSTTLLHHHHNHNHHQKQNFTIDDEQSGVTVALHIGLPTNISQNTTPISKPDHHLASAPIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGVKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCEDQEVLLGDEYDEEFEGDENYEDDDDNDNINRMVFGF*