Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1426670 | XP_024641056.1 | 89.542 | 306 | 21 | 1 | 1 | 306 | 1 | 295 | 0.0 | 520 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1426670 | sp|Q9FX68|ZWIP6_ARATH | 67.181 | 259 | 65 | 5 | 20 | 277 | 12 | 251 | 3.10e-116 | 340 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1426670 | A0A396HR52 | 89.542 | 306 | 21 | 1 | 1 | 306 | 1 | 295 | 0.0 | 520 |
Gene ID | Type | Classification |
---|---|---|
Msa1426670 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1426670 | MtrunA17_Chr5g0422571 | 89.542 | 306 | 21 | 1 | 1 | 306 | 1 | 295 | 0.0 | 520 |
Msa1426670 | MtrunA17_Chr1g0198651 | 70.120 | 251 | 60 | 5 | 20 | 268 | 23 | 260 | 8.87e-116 | 335 |
Msa1426670 | MtrunA17_Chr2g0328921 | 67.890 | 218 | 56 | 4 | 67 | 273 | 84 | 298 | 7.43e-107 | 313 |
Msa1426670 | MtrunA17_Chr1g0173841 | 61.538 | 247 | 60 | 4 | 70 | 287 | 144 | 384 | 3.74e-106 | 314 |
Msa1426670 | MtrunA17_Chr7g0258011 | 62.821 | 234 | 60 | 3 | 75 | 287 | 118 | 345 | 9.08e-104 | 307 |
Msa1426670 | MtrunA17_Chr8g0352011 | 62.174 | 230 | 64 | 5 | 75 | 287 | 112 | 335 | 9.15e-103 | 304 |
Msa1426670 | MtrunA17_Chr2g0321291 | 62.009 | 229 | 68 | 5 | 62 | 273 | 68 | 294 | 3.47e-100 | 296 |
Msa1426670 | MtrunA17_Chr4g0026521 | 63.470 | 219 | 64 | 4 | 77 | 282 | 76 | 291 | 1.99e-98 | 291 |
Msa1426670 | MtrunA17_Chr4g0053341 | 59.829 | 234 | 77 | 4 | 38 | 268 | 10 | 229 | 1.64e-95 | 281 |
Msa1426670 | MtrunA17_Chr1g0200421 | 38.596 | 171 | 87 | 8 | 107 | 263 | 226 | 392 | 9.87e-25 | 103 |
Msa1426670 | MtrunA17_Chr1g0181381 | 33.163 | 196 | 113 | 5 | 76 | 262 | 10 | 196 | 1.72e-23 | 100 |
Msa1426670 | MtrunA17_Chr8g0382121 | 40.278 | 144 | 80 | 5 | 127 | 266 | 127 | 268 | 1.97e-23 | 97.8 |
Msa1426670 | MtrunA17_Chr4g0029521 | 33.000 | 200 | 123 | 6 | 63 | 260 | 4 | 194 | 3.46e-23 | 99.4 |
Msa1426670 | MtrunA17_Chr4g0040571 | 31.771 | 192 | 120 | 4 | 84 | 274 | 27 | 208 | 1.89e-22 | 97.1 |
Msa1426670 | MtrunA17_Chr2g0320341 | 38.065 | 155 | 88 | 5 | 115 | 263 | 235 | 387 | 3.07e-22 | 95.9 |
Msa1426670 | MtrunA17_Chr1g0151351 | 35.057 | 174 | 101 | 6 | 88 | 259 | 33 | 196 | 6.99e-22 | 95.1 |
Msa1426670 | MtrunA17_Chr1g0199101 | 36.306 | 157 | 87 | 6 | 112 | 266 | 63 | 208 | 1.08e-21 | 95.1 |
Msa1426670 | MtrunA17_Chr7g0263941 | 33.889 | 180 | 106 | 6 | 85 | 262 | 23 | 191 | 1.66e-21 | 94.0 |
Msa1426670 | MtrunA17_Chr8g0373541 | 33.005 | 203 | 112 | 7 | 92 | 280 | 26 | 218 | 1.68e-21 | 94.4 |
Msa1426670 | MtrunA17_Chr1g0185121 | 30.841 | 214 | 135 | 6 | 65 | 275 | 8 | 211 | 2.13e-21 | 94.0 |
Msa1426670 | MtrunA17_Chr8g0342421 | 34.868 | 152 | 86 | 5 | 119 | 268 | 85 | 225 | 2.66e-21 | 94.0 |
Msa1426670 | MtrunA17_Chr7g0268961 | 37.500 | 144 | 77 | 6 | 119 | 260 | 45 | 177 | 4.00e-21 | 93.2 |
Msa1426670 | MtrunA17_Chr2g0330171 | 35.443 | 158 | 88 | 6 | 107 | 262 | 58 | 203 | 4.43e-21 | 93.2 |
Msa1426670 | MtrunA17_Chr2g0326381 | 38.571 | 140 | 76 | 4 | 119 | 257 | 55 | 185 | 8.74e-21 | 91.7 |
Msa1426670 | MtrunA17_Chr1g0210821 | 35.374 | 147 | 84 | 4 | 117 | 262 | 65 | 201 | 9.68e-21 | 92.4 |
Msa1426670 | MtrunA17_Chr1g0191991 | 35.443 | 158 | 83 | 6 | 113 | 262 | 74 | 220 | 2.02e-20 | 91.3 |
Msa1426670 | MtrunA17_Chr1g0162971 | 37.671 | 146 | 78 | 5 | 119 | 262 | 64 | 198 | 2.36e-20 | 90.9 |
Msa1426670 | MtrunA17_Chr1g0163001 | 35.294 | 153 | 86 | 5 | 112 | 262 | 59 | 200 | 6.85e-20 | 89.7 |
Msa1426670 | MtrunA17_Chr3g0123941 | 39.583 | 144 | 78 | 7 | 127 | 266 | 139 | 277 | 3.29e-19 | 86.7 |
Msa1426670 | MtrunA17_Chr3g0141431 | 33.721 | 172 | 102 | 6 | 91 | 260 | 17 | 178 | 3.39e-19 | 87.0 |
Msa1426670 | MtrunA17_Chr2g0324991 | 36.806 | 144 | 78 | 7 | 112 | 252 | 8 | 141 | 1.92e-17 | 77.8 |
Msa1426670 | MtrunA17_Chr6g0479921 | 30.612 | 147 | 89 | 6 | 117 | 260 | 50 | 186 | 3.09e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1426670 | AT1G13290.1 | 67.181 | 259 | 65 | 5 | 20 | 277 | 12 | 251 | 3.15e-117 | 340 |
Msa1426670 | AT3G57670.1 | 72.632 | 190 | 40 | 2 | 107 | 296 | 199 | 376 | 4.25e-101 | 301 |
Msa1426670 | AT1G51220.1 | 54.074 | 270 | 80 | 5 | 58 | 291 | 75 | 336 | 7.54e-100 | 297 |
Msa1426670 | AT3G20880.1 | 63.594 | 217 | 46 | 4 | 53 | 263 | 204 | 393 | 1.52e-97 | 293 |
Msa1426670 | AT1G08290.1 | 70.056 | 177 | 45 | 1 | 109 | 285 | 164 | 332 | 8.19e-96 | 286 |
Msa1426670 | AT1G34790.1 | 63.333 | 210 | 64 | 3 | 75 | 272 | 83 | 291 | 1.65e-91 | 274 |
Msa1426670 | AT1G34370.3 | 38.235 | 170 | 91 | 6 | 107 | 263 | 9 | 177 | 5.72e-27 | 107 |
Msa1426670 | AT1G34370.2 | 40.397 | 151 | 83 | 5 | 119 | 263 | 238 | 387 | 1.64e-26 | 109 |
Msa1426670 | AT1G34370.1 | 40.397 | 151 | 83 | 5 | 119 | 263 | 238 | 387 | 1.64e-26 | 109 |
Msa1426670 | AT5G22890.1 | 39.785 | 186 | 94 | 11 | 90 | 263 | 181 | 360 | 1.16e-24 | 102 |
Msa1426670 | AT5G66730.1 | 32.673 | 202 | 121 | 6 | 70 | 267 | 4 | 194 | 1.07e-22 | 98.2 |
Msa1426670 | AT1G55110.3 | 37.013 | 154 | 85 | 5 | 117 | 268 | 84 | 227 | 4.54e-22 | 96.3 |
Msa1426670 | AT1G55110.1 | 37.013 | 154 | 85 | 5 | 117 | 268 | 84 | 227 | 4.54e-22 | 96.3 |
Msa1426670 | AT1G55110.2 | 37.013 | 154 | 85 | 5 | 117 | 268 | 84 | 227 | 4.54e-22 | 96.3 |
Msa1426670 | AT3G50700.1 | 32.673 | 202 | 123 | 5 | 70 | 268 | 6 | 197 | 9.29e-22 | 95.1 |
Msa1426670 | AT5G03150.1 | 37.063 | 143 | 80 | 4 | 119 | 260 | 76 | 209 | 1.20e-21 | 95.1 |
Msa1426670 | AT5G44160.1 | 33.523 | 176 | 106 | 4 | 93 | 267 | 34 | 199 | 1.63e-21 | 94.7 |
Msa1426670 | AT2G02080.1 | 37.255 | 153 | 83 | 5 | 117 | 267 | 75 | 216 | 1.63e-21 | 95.1 |
Msa1426670 | AT2G02080.4 | 37.255 | 153 | 83 | 5 | 117 | 267 | 75 | 216 | 1.63e-21 | 95.1 |
Msa1426670 | AT2G02080.5 | 37.255 | 153 | 83 | 5 | 117 | 267 | 75 | 216 | 1.63e-21 | 95.1 |
Msa1426670 | AT2G02080.3 | 37.255 | 153 | 83 | 5 | 117 | 267 | 75 | 216 | 1.63e-21 | 95.1 |
Msa1426670 | AT2G02070.2 | 37.255 | 153 | 83 | 5 | 117 | 267 | 73 | 214 | 2.05e-21 | 94.7 |
Msa1426670 | AT2G02070.1 | 37.255 | 153 | 83 | 5 | 117 | 267 | 73 | 214 | 2.05e-21 | 94.7 |
Msa1426670 | AT1G03840.1 | 33.523 | 176 | 106 | 5 | 93 | 267 | 38 | 203 | 2.52e-21 | 94.4 |
Msa1426670 | AT1G03840.2 | 34.091 | 176 | 103 | 7 | 93 | 267 | 38 | 201 | 4.56e-21 | 93.6 |
Msa1426670 | AT5G44160.2 | 36.000 | 150 | 85 | 4 | 119 | 267 | 21 | 160 | 5.05e-21 | 93.2 |
Msa1426670 | AT2G02080.6 | 37.333 | 150 | 81 | 5 | 120 | 267 | 1 | 139 | 6.58e-21 | 92.8 |
Msa1426670 | AT2G02080.2 | 37.333 | 150 | 81 | 5 | 120 | 267 | 1 | 139 | 6.58e-21 | 92.8 |
Msa1426670 | AT1G14580.1 | 36.986 | 146 | 79 | 5 | 117 | 260 | 74 | 208 | 3.39e-20 | 90.9 |
Msa1426670 | AT1G14580.2 | 36.986 | 146 | 79 | 5 | 117 | 260 | 74 | 208 | 3.39e-20 | 90.9 |
Msa1426670 | AT1G14580.3 | 36.986 | 146 | 79 | 5 | 117 | 260 | 88 | 222 | 3.97e-20 | 90.9 |
Msa1426670 | AT3G45260.2 | 35.333 | 150 | 87 | 4 | 119 | 267 | 62 | 202 | 5.32e-20 | 90.1 |
Msa1426670 | AT3G45260.1 | 35.333 | 150 | 87 | 4 | 119 | 267 | 62 | 202 | 5.32e-20 | 90.1 |
Msa1426670 | AT5G60470.2 | 32.227 | 211 | 122 | 7 | 56 | 262 | 9 | 202 | 6.03e-20 | 90.1 |
Msa1426670 | AT5G60470.3 | 32.227 | 211 | 122 | 7 | 56 | 262 | 5 | 198 | 7.04e-20 | 89.7 |
Msa1426670 | AT5G60470.1 | 37.241 | 145 | 81 | 5 | 119 | 262 | 58 | 193 | 8.25e-20 | 89.7 |
Msa1426670 | AT3G13810.4 | 34.615 | 156 | 92 | 4 | 112 | 266 | 86 | 232 | 9.65e-20 | 89.7 |
Msa1426670 | AT3G13810.1 | 34.615 | 156 | 92 | 4 | 112 | 266 | 86 | 232 | 9.65e-20 | 89.7 |
Msa1426670 | AT3G13810.2 | 34.615 | 156 | 92 | 4 | 112 | 266 | 87 | 233 | 9.67e-20 | 89.7 |
Msa1426670 | AT3G13810.5 | 35.099 | 151 | 88 | 4 | 117 | 266 | 86 | 227 | 1.03e-19 | 89.7 |
Msa1426670 | AT3G13810.3 | 34.615 | 156 | 92 | 4 | 112 | 266 | 73 | 219 | 1.03e-19 | 89.7 |
Msa1426670 | AT3G13810.6 | 35.099 | 151 | 88 | 4 | 117 | 266 | 72 | 213 | 1.10e-19 | 89.4 |
Msa1426670 | AT4G02670.2 | 34.211 | 152 | 90 | 4 | 112 | 262 | 71 | 213 | 8.55e-19 | 86.3 |
Msa1426670 | AT4G02670.1 | 34.211 | 152 | 90 | 4 | 112 | 262 | 69 | 211 | 8.94e-19 | 86.3 |
Msa1426670 | AT1G25250.3 | 30.216 | 139 | 88 | 4 | 117 | 253 | 54 | 185 | 1.65e-11 | 64.7 |
Msa1426670 | AT1G25250.1 | 30.216 | 139 | 88 | 4 | 117 | 253 | 31 | 162 | 1.68e-11 | 64.7 |
Find 66 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTACTCCCCTTAGAGATTC+TGG | 0.179929 | tig0026056:-22733 | Msa1426670:intergenic |
CTCCTATTCAAGGTCAATAT+TGG | 0.253994 | tig0026056:+22064 | Msa1426670:CDS |
AAAGATCATGTTCGTGCTTT+CGG | 0.314009 | tig0026056:+23021 | Msa1426670:CDS |
GGTTTGTGGTTGTGTGTTCC+AGG | 0.317646 | tig0026056:-21844 | Msa1426670:intergenic |
GAAAAGGACCAGAATCTCTA+AGG | 0.322420 | tig0026056:+22725 | Msa1426670:CDS |
TGATGATCAGGTTTACTAAT+AGG | 0.342578 | tig0026056:-22030 | Msa1426670:intergenic |
TCACTCTCACTTGGCCCTCC+TGG | 0.348650 | tig0026056:+21826 | Msa1426670:CDS |
TTTAATGTGGAGGATAGTTT+AGG | 0.370427 | tig0026056:-21865 | Msa1426670:intergenic |
TAGTAAACCTGATCATCATT+TGG | 0.397302 | tig0026056:+22035 | Msa1426670:CDS |
AGCATGGAGCGAAGCCATTC+GGG | 0.401651 | tig0026056:+22881 | Msa1426670:CDS |
TGGAGGATAGTTTAGGTTTG+TGG | 0.408461 | tig0026056:-21858 | Msa1426670:intergenic |
GGGAAACCATTTGCAGTTAG+AGG | 0.410419 | tig0026056:+22916 | Msa1426670:CDS |
GAAGATCAGGAAGTATTGTT+AGG | 0.411354 | tig0026056:+23078 | Msa1426670:CDS |
TTGGCTTCAGCTCCTATTCA+AGG | 0.424273 | tig0026056:+22054 | Msa1426670:CDS |
AAGCATGGAGCGAAGCCATT+CGG | 0.440022 | tig0026056:+22880 | Msa1426670:CDS |
CATGTTCGTGCTTTCGGTGA+TGG | 0.445219 | tig0026056:+23027 | Msa1426670:CDS |
GTCATTATTAGTTTCAATTG+AGG | 0.447268 | tig0026056:-21782 | Msa1426670:intergenic |
AGTTTCAATTGAGGATATGT+TGG | 0.454073 | tig0026056:-21773 | Msa1426670:intergenic |
ACCACTTTGCTCATCATCAA+TGG | 0.458380 | tig0026056:-21953 | Msa1426670:intergenic |
CGTCGAGAGTTGTGAAGATC+AGG | 0.460359 | tig0026056:+23065 | Msa1426670:CDS |
TCACCTGCTCAAATCCTCAT+TGG | 0.461696 | tig0026056:+22093 | Msa1426670:CDS |
CAACCGTTTCAATAATATGC+AGG | 0.466033 | tig0026056:+22155 | Msa1426670:CDS |
CAGTCACCTCTAACTGCAAA+TGG | 0.466119 | tig0026056:-22922 | Msa1426670:intergenic |
AGTAGAAGAGTGATTTAATG+TGG | 0.470478 | tig0026056:-21878 | Msa1426670:intergenic |
TCTTCCATTTCACTCTCACT+TGG | 0.472544 | tig0026056:+21817 | Msa1426670:CDS |
GCTGAAGCCAAATGATGATC+AGG | 0.472827 | tig0026056:-22042 | Msa1426670:intergenic |
ATCCAATATTGACCTTGAAT+AGG | 0.474167 | tig0026056:-22066 | Msa1426670:intergenic |
TAACCTGCATATTATTGAAA+CGG | 0.475929 | tig0026056:-22158 | Msa1426670:intergenic |
TCCTTGAGTGGCCTTGACCT+TGG | 0.476401 | tig0026056:-22826 | Msa1426670:intergenic |
AGTCTTAACATTGATGAAGC+TGG | 0.481814 | tig0026056:-22757 | Msa1426670:intergenic |
AGGGCCAAGTGAGAGTGAAA+TGG | 0.483147 | tig0026056:-21821 | Msa1426670:intergenic |
GTATATATCAGATGCATATG+TGG | 0.492007 | tig0026056:+22683 | Msa1426670:intron |
CCTTGCTATTGCTGTGCAGA+GGG | 0.509164 | tig0026056:+22781 | Msa1426670:CDS |
TATATATCAGATGCATATGT+GGG | 0.512415 | tig0026056:+22684 | Msa1426670:intron |
TCCTTGCTATTGCTGTGCAG+AGG | 0.519467 | tig0026056:+22780 | Msa1426670:CDS |
CAGATGCATATGTGGGGACA+TGG | 0.520986 | tig0026056:+22691 | Msa1426670:intron |
CATGGATCACAATACAGAAA+AGG | 0.532079 | tig0026056:+22709 | Msa1426670:CDS |
GAATATGACGAGGAATTTGA+AGG | 0.538705 | tig0026056:+23105 | Msa1426670:CDS |
GGAGAATGTGTGAGCTTGCA+TGG | 0.548279 | tig0026056:-21752 | Msa1426670:intergenic |
CACTTCAAACACACTACAAG+AGG | 0.550716 | tig0026056:+22857 | Msa1426670:CDS |
TGTGGTTGTGTGTTCCAGGA+GGG | 0.551458 | tig0026056:-21840 | Msa1426670:intergenic |
TCACAACTCTCGACGGTGTG+TGG | 0.553384 | tig0026056:-23057 | Msa1426670:intergenic |
AAAAGGACCAGAATCTCTAA+GGG | 0.555739 | tig0026056:+22726 | Msa1426670:CDS |
TCCAAGGTCAAGGCCACTCA+AGG | 0.567553 | tig0026056:+22825 | Msa1426670:CDS |
CATTTGCAGTTAGAGGTGAC+TGG | 0.568578 | tig0026056:+22923 | Msa1426670:CDS |
CCCTCTGCACAGCAATAGCA+AGG | 0.583701 | tig0026056:-22781 | Msa1426670:intergenic |
ATGAGGATTTGAGCAGGTGA+AGG | 0.587509 | tig0026056:-22090 | Msa1426670:intergenic |
CCATTCGGGTGTAGAAAGTG+TGG | 0.590964 | tig0026056:+22895 | Msa1426670:CDS |
ACACACTACAAGAGGAAGCA+TGG | 0.591744 | tig0026056:+22865 | Msa1426670:CDS |
AGAACAACATAGAGCATCCA+AGG | 0.593445 | tig0026056:+22809 | Msa1426670:CDS |
CCACACTTTCTACACCCGAA+TGG | 0.593700 | tig0026056:-22895 | Msa1426670:intergenic |
TAATGATAACATCAATCGAA+TGG | 0.599548 | tig0026056:+23155 | Msa1426670:CDS |
CTGATCTTCACAACTCTCGA+CGG | 0.614391 | tig0026056:-23064 | Msa1426670:intergenic |
ACAGTGCAAGAGAACTGTGT+TGG | 0.625514 | tig0026056:-22117 | Msa1426670:intergenic |
AGAAGAGTGATTTAATGTGG+AGG | 0.629008 | tig0026056:-21875 | Msa1426670:intergenic |
GGTCCAATGAGGATTTGAGC+AGG | 0.629341 | tig0026056:-22096 | Msa1426670:intergenic |
ACATAGAGCATCCAAGGTCA+AGG | 0.630952 | tig0026056:+22815 | Msa1426670:CDS |
TTGTGGTTGTGTGTTCCAGG+AGG | 0.639378 | tig0026056:-21841 | Msa1426670:intergenic |
AGAACTGTGTTGGTCCAATG+AGG | 0.645090 | tig0026056:-22107 | Msa1426670:intergenic |
AGTGTTCTGAAATCCTTGAG+TGG | 0.647415 | tig0026056:-22838 | Msa1426670:intergenic |
GTAACAGTTGCACTTCACAT+TGG | 0.647512 | tig0026056:+21976 | Msa1426670:CDS |
CATTCGGGTGTAGAAAGTGT+GGG | 0.658306 | tig0026056:+22896 | Msa1426670:CDS |
ACCATTGATGATGAGCAAAG+TGG | 0.669448 | tig0026056:+21952 | Msa1426670:CDS |
GTTAGGTGATGAATATGACG+AGG | 0.714430 | tig0026056:+23095 | Msa1426670:CDS |
ATATATCAGATGCATATGTG+GGG | 0.720271 | tig0026056:+22685 | Msa1426670:intron |
AAAGGACCAGAATCTCTAAG+GGG | 0.721082 | tig0026056:+22727 | Msa1426670:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAAAAAAAAAAGTTCACTAA+AGG | - | tig0026056:22311-22330 | Msa1426670:intergenic | 20.0% |
!!! | ATTGTTCATTTTTATCTTCT+AGG | - | tig0026056:22557-22576 | Msa1426670:intergenic | 20.0% |
!! | CAAAAAAAAAAGTTCACTAA+AGG | - | tig0026056:22311-22330 | Msa1426670:intergenic | 20.0% |
!!! | ATTGTTCATTTTTATCTTCT+AGG | - | tig0026056:22557-22576 | Msa1426670:intergenic | 20.0% |
!! | GTCATTATTAGTTTCAATTG+AGG | - | tig0026056:21785-21804 | Msa0883930:intergenic | 25.0% |
! | TAACCTGCATATTATTGAAA+CGG | - | tig0026056:22161-22180 | Msa1426670:intergenic | 25.0% |
!!! | CTAGTTCTTGACAAATTTTA+TGG | - | tig0026056:22437-22456 | Msa1426670:intergenic | 25.0% |
!!! | AGGAGTATTGACAAATTTTT+TGG | - | tig0026056:22474-22493 | Msa1426670:intergenic | 25.0% |
!! | AAATGACAAAATTTTGTGCT+TGG | - | tig0026056:22616-22635 | Msa1426670:intergenic | 25.0% |
! | TATATATCAGATGCATATGT+GGG | + | tig0026056:22684-22703 | Msa1426670:intron | 25.0% |
! | TAATGATAACATCAATCGAA+TGG | + | tig0026056:23155-23174 | Msa1426670:CDS | 25.0% |
!! | GTCATTATTAGTTTCAATTG+AGG | - | tig0026056:21785-21804 | Msa1426670:intergenic | 25.0% |
! | TAACCTGCATATTATTGAAA+CGG | - | tig0026056:22161-22180 | Msa1426670:intergenic | 25.0% |
!!! | CTAGTTCTTGACAAATTTTA+TGG | - | tig0026056:22437-22456 | Msa1426670:intergenic | 25.0% |
!!! | AGGAGTATTGACAAATTTTT+TGG | - | tig0026056:22474-22493 | Msa1426670:intergenic | 25.0% |
!! | AAATGACAAAATTTTGTGCT+TGG | - | tig0026056:22616-22635 | Msa1426670:intergenic | 25.0% |
! | TATATATCAGATGCATATGT+GGG | + | tig0026056:22684-22703 | Msa1426670:intron | 25.0% |
! | TAATGATAACATCAATCGAA+TGG | + | tig0026056:23155-23174 | Msa1426670:CDS | 25.0% |
AGTTTCAATTGAGGATATGT+TGG | - | tig0026056:21776-21795 | Msa0883930:intergenic | 30.0% | |
TTTAATGTGGAGGATAGTTT+AGG | - | tig0026056:21868-21887 | Msa1426670:intergenic | 30.0% | |
AGTAGAAGAGTGATTTAATG+TGG | - | tig0026056:21881-21900 | Msa1426670:intergenic | 30.0% | |
! | CAATGGTAAAGTTTTGCTTT+TGG | - | tig0026056:21939-21958 | Msa1426670:intergenic | 30.0% |
! | TGTTGTGTTTTGTGAAATGT+TGG | - | tig0026056:22010-22029 | Msa1426670:intergenic | 30.0% |
TGATGATCAGGTTTACTAAT+AGG | - | tig0026056:22033-22052 | Msa1426670:intergenic | 30.0% | |
TAGTAAACCTGATCATCATT+TGG | + | tig0026056:22035-22054 | Msa1426670:CDS | 30.0% | |
ATCCAATATTGACCTTGAAT+AGG | - | tig0026056:22069-22088 | Msa1426670:intergenic | 30.0% | |
AACGATTCAAGATGGTATTA+GGG | - | tig0026056:22367-22386 | Msa1426670:intergenic | 30.0% | |
TAACGATTCAAGATGGTATT+AGG | - | tig0026056:22368-22387 | Msa1426670:intergenic | 30.0% | |
! | AAAGTGTTAACGATTCAAGA+TGG | - | tig0026056:22375-22394 | Msa1426670:intergenic | 30.0% |
ATGTCCTAATGCATACTATA+TGG | + | tig0026056:22497-22516 | Msa1426670:intron | 30.0% | |
TCTTCCATATAGTATGCATT+AGG | - | tig0026056:22504-22523 | Msa1426670:intergenic | 30.0% | |
GTATATATCAGATGCATATG+TGG | + | tig0026056:22683-22702 | Msa1426670:intron | 30.0% | |
ATATATCAGATGCATATGTG+GGG | + | tig0026056:22685-22704 | Msa1426670:intron | 30.0% | |
! | AACATCAATCGAATGGTTTT+CGG | + | tig0026056:23162-23181 | Msa1426670:CDS | 30.0% |
AGTTTCAATTGAGGATATGT+TGG | - | tig0026056:21776-21795 | Msa1426670:intergenic | 30.0% | |
TTTAATGTGGAGGATAGTTT+AGG | - | tig0026056:21868-21887 | Msa1426670:intergenic | 30.0% | |
AGTAGAAGAGTGATTTAATG+TGG | - | tig0026056:21881-21900 | Msa1426670:intergenic | 30.0% | |
! | CAATGGTAAAGTTTTGCTTT+TGG | - | tig0026056:21939-21958 | Msa1426670:intergenic | 30.0% |
! | TGTTGTGTTTTGTGAAATGT+TGG | - | tig0026056:22010-22029 | Msa1426670:intergenic | 30.0% |
TGATGATCAGGTTTACTAAT+AGG | - | tig0026056:22033-22052 | Msa1426670:intergenic | 30.0% | |
TAGTAAACCTGATCATCATT+TGG | + | tig0026056:22035-22054 | Msa1426670:CDS | 30.0% | |
ATCCAATATTGACCTTGAAT+AGG | - | tig0026056:22069-22088 | Msa1426670:intergenic | 30.0% | |
AACGATTCAAGATGGTATTA+GGG | - | tig0026056:22367-22386 | Msa1426670:intergenic | 30.0% | |
TAACGATTCAAGATGGTATT+AGG | - | tig0026056:22368-22387 | Msa1426670:intergenic | 30.0% | |
! | AAAGTGTTAACGATTCAAGA+TGG | - | tig0026056:22375-22394 | Msa1426670:intergenic | 30.0% |
ATGTCCTAATGCATACTATA+TGG | + | tig0026056:22497-22516 | Msa1426670:intron | 30.0% | |
TCTTCCATATAGTATGCATT+AGG | - | tig0026056:22504-22523 | Msa1426670:intergenic | 30.0% | |
GTATATATCAGATGCATATG+TGG | + | tig0026056:22683-22702 | Msa1426670:intron | 30.0% | |
ATATATCAGATGCATATGTG+GGG | + | tig0026056:22685-22704 | Msa1426670:intron | 30.0% | |
! | AACATCAATCGAATGGTTTT+CGG | + | tig0026056:23162-23181 | Msa1426670:CDS | 30.0% |
AGAAGAGTGATTTAATGTGG+AGG | - | tig0026056:21878-21897 | Msa1426670:intergenic | 35.0% | |
!! | TGGTAAAGTTTTGCTTTTGG+TGG | - | tig0026056:21936-21955 | Msa1426670:intergenic | 35.0% |
! | GTGTTTTGTGAAATGTTGGT+TGG | - | tig0026056:22006-22025 | Msa1426670:intergenic | 35.0% |
CTCCTATTCAAGGTCAATAT+TGG | + | tig0026056:22064-22083 | Msa1426670:CDS | 35.0% | |
CAACCGTTTCAATAATATGC+AGG | + | tig0026056:22155-22174 | Msa1426670:CDS | 35.0% | |
TGTATCTTGAACTACTAGCT+AGG | - | tig0026056:22238-22257 | Msa1426670:intergenic | 35.0% | |
AGTATGCATTAGGACATTGA+AGG | - | tig0026056:22494-22513 | Msa1426670:intergenic | 35.0% | |
CATGGATCACAATACAGAAA+AGG | + | tig0026056:22709-22728 | Msa1426670:CDS | 35.0% | |
AAAAGGACCAGAATCTCTAA+GGG | + | tig0026056:22726-22745 | Msa1426670:CDS | 35.0% | |
AGTCTTAACATTGATGAAGC+TGG | - | tig0026056:22760-22779 | Msa1426670:intergenic | 35.0% | |
AGAACACATGAGAAAAACTG+TGG | + | tig0026056:22946-22965 | Msa1426670:CDS | 35.0% | |
AGAAAAACTGTGGAAAGCTT+TGG | + | tig0026056:22956-22975 | Msa1426670:CDS | 35.0% | |
!!! | AAGCTTTGGTTTTGTATCTG+TGG | + | tig0026056:22970-22989 | Msa1426670:CDS | 35.0% |
AAAGATCATGTTCGTGCTTT+CGG | + | tig0026056:23021-23040 | Msa1426670:CDS | 35.0% | |
!! | GAAGATCAGGAAGTATTGTT+AGG | + | tig0026056:23078-23097 | Msa1426670:CDS | 35.0% |
GAATATGACGAGGAATTTGA+AGG | + | tig0026056:23105-23124 | Msa1426670:CDS | 35.0% | |
AGAAGAGTGATTTAATGTGG+AGG | - | tig0026056:21878-21897 | Msa1426670:intergenic | 35.0% | |
!! | TGGTAAAGTTTTGCTTTTGG+TGG | - | tig0026056:21936-21955 | Msa1426670:intergenic | 35.0% |
! | GTGTTTTGTGAAATGTTGGT+TGG | - | tig0026056:22006-22025 | Msa1426670:intergenic | 35.0% |
CTCCTATTCAAGGTCAATAT+TGG | + | tig0026056:22064-22083 | Msa1426670:CDS | 35.0% | |
CAACCGTTTCAATAATATGC+AGG | + | tig0026056:22155-22174 | Msa1426670:CDS | 35.0% | |
TGTATCTTGAACTACTAGCT+AGG | - | tig0026056:22238-22257 | Msa1426670:intergenic | 35.0% | |
AGTATGCATTAGGACATTGA+AGG | - | tig0026056:22494-22513 | Msa1426670:intergenic | 35.0% | |
CATGGATCACAATACAGAAA+AGG | + | tig0026056:22709-22728 | Msa1426670:CDS | 35.0% | |
AAAAGGACCAGAATCTCTAA+GGG | + | tig0026056:22726-22745 | Msa1426670:CDS | 35.0% | |
AGTCTTAACATTGATGAAGC+TGG | - | tig0026056:22760-22779 | Msa1426670:intergenic | 35.0% | |
AGAACACATGAGAAAAACTG+TGG | + | tig0026056:22946-22965 | Msa1426670:CDS | 35.0% | |
AGAAAAACTGTGGAAAGCTT+TGG | + | tig0026056:22956-22975 | Msa1426670:CDS | 35.0% | |
!!! | AAGCTTTGGTTTTGTATCTG+TGG | + | tig0026056:22970-22989 | Msa1426670:CDS | 35.0% |
AAAGATCATGTTCGTGCTTT+CGG | + | tig0026056:23021-23040 | Msa1426670:CDS | 35.0% | |
!! | GAAGATCAGGAAGTATTGTT+AGG | + | tig0026056:23078-23097 | Msa1426670:CDS | 35.0% |
GAATATGACGAGGAATTTGA+AGG | + | tig0026056:23105-23124 | Msa1426670:CDS | 35.0% | |
TCTTCCATTTCACTCTCACT+TGG | + | tig0026056:21817-21836 | Msa1426670:CDS | 40.0% | |
! | TGGAGGATAGTTTAGGTTTG+TGG | - | tig0026056:21861-21880 | Msa1426670:intergenic | 40.0% |
!! | ACCATTGATGATGAGCAAAG+TGG | + | tig0026056:21952-21971 | Msa1426670:CDS | 40.0% |
ACCACTTTGCTCATCATCAA+TGG | - | tig0026056:21956-21975 | Msa1426670:intergenic | 40.0% | |
GTAACAGTTGCACTTCACAT+TGG | + | tig0026056:21976-21995 | Msa1426670:CDS | 40.0% | |
AGCTAGGCAATAGACAGTTT+AGG | - | tig0026056:22222-22241 | Msa1426670:intergenic | 40.0% | |
GAAAAGGACCAGAATCTCTA+AGG | + | tig0026056:22725-22744 | Msa1426670:CDS | 40.0% | |
AAAGGACCAGAATCTCTAAG+GGG | + | tig0026056:22727-22746 | Msa1426670:CDS | 40.0% | |
TTTACTCCCCTTAGAGATTC+TGG | - | tig0026056:22736-22755 | Msa1426670:intergenic | 40.0% | |
! | AGAACAACATAGAGCATCCA+AGG | + | tig0026056:22809-22828 | Msa1426670:CDS | 40.0% |
!! | AGTGTTCTGAAATCCTTGAG+TGG | - | tig0026056:22841-22860 | Msa1426670:intergenic | 40.0% |
CACTTCAAACACACTACAAG+AGG | + | tig0026056:22857-22876 | Msa1426670:CDS | 40.0% | |
GTTAGGTGATGAATATGACG+AGG | + | tig0026056:23095-23114 | Msa1426670:CDS | 40.0% | |
TCTTCCATTTCACTCTCACT+TGG | + | tig0026056:21817-21836 | Msa1426670:CDS | 40.0% | |
! | TGGAGGATAGTTTAGGTTTG+TGG | - | tig0026056:21861-21880 | Msa1426670:intergenic | 40.0% |
!! | ACCATTGATGATGAGCAAAG+TGG | + | tig0026056:21952-21971 | Msa1426670:CDS | 40.0% |
ACCACTTTGCTCATCATCAA+TGG | - | tig0026056:21956-21975 | Msa1426670:intergenic | 40.0% | |
GTAACAGTTGCACTTCACAT+TGG | + | tig0026056:21976-21995 | Msa1426670:CDS | 40.0% | |
AGCTAGGCAATAGACAGTTT+AGG | - | tig0026056:22222-22241 | Msa1426670:intergenic | 40.0% | |
GAAAAGGACCAGAATCTCTA+AGG | + | tig0026056:22725-22744 | Msa1426670:CDS | 40.0% | |
AAAGGACCAGAATCTCTAAG+GGG | + | tig0026056:22727-22746 | Msa1426670:CDS | 40.0% | |
TTTACTCCCCTTAGAGATTC+TGG | - | tig0026056:22736-22755 | Msa1426670:intergenic | 40.0% | |
! | AGAACAACATAGAGCATCCA+AGG | + | tig0026056:22809-22828 | Msa1426670:CDS | 40.0% |
!! | AGTGTTCTGAAATCCTTGAG+TGG | - | tig0026056:22841-22860 | Msa1426670:intergenic | 40.0% |
CACTTCAAACACACTACAAG+AGG | + | tig0026056:22857-22876 | Msa1426670:CDS | 40.0% | |
GTTAGGTGATGAATATGACG+AGG | + | tig0026056:23095-23114 | Msa1426670:CDS | 40.0% | |
GCTGAAGCCAAATGATGATC+AGG | - | tig0026056:22045-22064 | Msa1426670:intergenic | 45.0% | |
TTGGCTTCAGCTCCTATTCA+AGG | + | tig0026056:22054-22073 | Msa1426670:CDS | 45.0% | |
ATGAGGATTTGAGCAGGTGA+AGG | - | tig0026056:22093-22112 | Msa1426670:intergenic | 45.0% | |
TCACCTGCTCAAATCCTCAT+TGG | + | tig0026056:22093-22112 | Msa1426670:CDS | 45.0% | |
! | AGAACTGTGTTGGTCCAATG+AGG | - | tig0026056:22110-22129 | Msa1426670:intergenic | 45.0% |
ACAGTGCAAGAGAACTGTGT+TGG | - | tig0026056:22120-22139 | Msa1426670:intergenic | 45.0% | |
! | ACATAGAGCATCCAAGGTCA+AGG | + | tig0026056:22815-22834 | Msa1426670:CDS | 45.0% |
ACACACTACAAGAGGAAGCA+TGG | + | tig0026056:22865-22884 | Msa1426670:CDS | 45.0% | |
! | CATTCGGGTGTAGAAAGTGT+GGG | + | tig0026056:22896-22915 | Msa1426670:CDS | 45.0% |
GGGAAACCATTTGCAGTTAG+AGG | + | tig0026056:22916-22935 | Msa1426670:CDS | 45.0% | |
CAGTCACCTCTAACTGCAAA+TGG | - | tig0026056:22925-22944 | Msa1426670:intergenic | 45.0% | |
CATTTGCAGTTAGAGGTGAC+TGG | + | tig0026056:22923-22942 | Msa1426670:CDS | 45.0% | |
CTGATCTTCACAACTCTCGA+CGG | - | tig0026056:23067-23086 | Msa1426670:intergenic | 45.0% | |
GCTGAAGCCAAATGATGATC+AGG | - | tig0026056:22045-22064 | Msa1426670:intergenic | 45.0% | |
TTGGCTTCAGCTCCTATTCA+AGG | + | tig0026056:22054-22073 | Msa1426670:CDS | 45.0% | |
ATGAGGATTTGAGCAGGTGA+AGG | - | tig0026056:22093-22112 | Msa1426670:intergenic | 45.0% | |
TCACCTGCTCAAATCCTCAT+TGG | + | tig0026056:22093-22112 | Msa1426670:CDS | 45.0% | |
! | AGAACTGTGTTGGTCCAATG+AGG | - | tig0026056:22110-22129 | Msa1426670:intergenic | 45.0% |
ACAGTGCAAGAGAACTGTGT+TGG | - | tig0026056:22120-22139 | Msa1426670:intergenic | 45.0% | |
! | ACATAGAGCATCCAAGGTCA+AGG | + | tig0026056:22815-22834 | Msa1426670:CDS | 45.0% |
ACACACTACAAGAGGAAGCA+TGG | + | tig0026056:22865-22884 | Msa1426670:CDS | 45.0% | |
! | CATTCGGGTGTAGAAAGTGT+GGG | + | tig0026056:22896-22915 | Msa1426670:CDS | 45.0% |
GGGAAACCATTTGCAGTTAG+AGG | + | tig0026056:22916-22935 | Msa1426670:CDS | 45.0% | |
CAGTCACCTCTAACTGCAAA+TGG | - | tig0026056:22925-22944 | Msa1426670:intergenic | 45.0% | |
CATTTGCAGTTAGAGGTGAC+TGG | + | tig0026056:22923-22942 | Msa1426670:CDS | 45.0% | |
CTGATCTTCACAACTCTCGA+CGG | - | tig0026056:23067-23086 | Msa1426670:intergenic | 45.0% | |
!!! | TTTTTATAAATAAATATTAG+TGG | + | tig0026056:22396-22415 | Msa1426670:intron | 5.0% |
!!! | TTTTTATAAATAAATATTAG+TGG | + | tig0026056:22396-22415 | Msa1426670:intron | 5.0% |
AGGGCCAAGTGAGAGTGAAA+TGG | - | tig0026056:21824-21843 | Msa1426670:intergenic | 50.0% | |
TGTGGTTGTGTGTTCCAGGA+GGG | - | tig0026056:21843-21862 | Msa1426670:intergenic | 50.0% | |
TTGTGGTTGTGTGTTCCAGG+AGG | - | tig0026056:21844-21863 | Msa1426670:intergenic | 50.0% | |
GGTTTGTGGTTGTGTGTTCC+AGG | - | tig0026056:21847-21866 | Msa1426670:intergenic | 50.0% | |
GGTCCAATGAGGATTTGAGC+AGG | - | tig0026056:22099-22118 | Msa1426670:intergenic | 50.0% | |
CAGATGCATATGTGGGGACA+TGG | + | tig0026056:22691-22710 | Msa1426670:intron | 50.0% | |
!! | TCCTTGCTATTGCTGTGCAG+AGG | + | tig0026056:22780-22799 | Msa1426670:CDS | 50.0% |
!! | CCTTGCTATTGCTGTGCAGA+GGG | + | tig0026056:22781-22800 | Msa1426670:CDS | 50.0% |
AAGCATGGAGCGAAGCCATT+CGG | + | tig0026056:22880-22899 | Msa1426670:CDS | 50.0% | |
CCACACTTTCTACACCCGAA+TGG | - | tig0026056:22898-22917 | Msa1426670:intergenic | 50.0% | |
CCATTCGGGTGTAGAAAGTG+TGG | + | tig0026056:22895-22914 | Msa1426670:CDS | 50.0% | |
CATGTTCGTGCTTTCGGTGA+TGG | + | tig0026056:23027-23046 | Msa1426670:CDS | 50.0% | |
CGTCGAGAGTTGTGAAGATC+AGG | + | tig0026056:23065-23084 | Msa1426670:CDS | 50.0% | |
AGGGCCAAGTGAGAGTGAAA+TGG | - | tig0026056:21824-21843 | Msa1426670:intergenic | 50.0% | |
TGTGGTTGTGTGTTCCAGGA+GGG | - | tig0026056:21843-21862 | Msa1426670:intergenic | 50.0% | |
TTGTGGTTGTGTGTTCCAGG+AGG | - | tig0026056:21844-21863 | Msa1426670:intergenic | 50.0% | |
GGTTTGTGGTTGTGTGTTCC+AGG | - | tig0026056:21847-21866 | Msa1426670:intergenic | 50.0% | |
GGTCCAATGAGGATTTGAGC+AGG | - | tig0026056:22099-22118 | Msa1426670:intergenic | 50.0% | |
CAGATGCATATGTGGGGACA+TGG | + | tig0026056:22691-22710 | Msa1426670:intron | 50.0% | |
!! | TCCTTGCTATTGCTGTGCAG+AGG | + | tig0026056:22780-22799 | Msa1426670:CDS | 50.0% |
!! | CCTTGCTATTGCTGTGCAGA+GGG | + | tig0026056:22781-22800 | Msa1426670:CDS | 50.0% |
AAGCATGGAGCGAAGCCATT+CGG | + | tig0026056:22880-22899 | Msa1426670:CDS | 50.0% | |
CCACACTTTCTACACCCGAA+TGG | - | tig0026056:22898-22917 | Msa1426670:intergenic | 50.0% | |
CCATTCGGGTGTAGAAAGTG+TGG | + | tig0026056:22895-22914 | Msa1426670:CDS | 50.0% | |
CATGTTCGTGCTTTCGGTGA+TGG | + | tig0026056:23027-23046 | Msa1426670:CDS | 50.0% | |
CGTCGAGAGTTGTGAAGATC+AGG | + | tig0026056:23065-23084 | Msa1426670:CDS | 50.0% | |
CCCTCTGCACAGCAATAGCA+AGG | - | tig0026056:22784-22803 | Msa1426670:intergenic | 55.0% | |
TCCAAGGTCAAGGCCACTCA+AGG | + | tig0026056:22825-22844 | Msa1426670:CDS | 55.0% | |
! | TCCTTGAGTGGCCTTGACCT+TGG | - | tig0026056:22829-22848 | Msa1426670:intergenic | 55.0% |
AGCATGGAGCGAAGCCATTC+GGG | + | tig0026056:22881-22900 | Msa1426670:CDS | 55.0% | |
TCACAACTCTCGACGGTGTG+TGG | - | tig0026056:23060-23079 | Msa1426670:intergenic | 55.0% | |
CCCTCTGCACAGCAATAGCA+AGG | - | tig0026056:22784-22803 | Msa1426670:intergenic | 55.0% | |
TCCAAGGTCAAGGCCACTCA+AGG | + | tig0026056:22825-22844 | Msa1426670:CDS | 55.0% | |
! | TCCTTGAGTGGCCTTGACCT+TGG | - | tig0026056:22829-22848 | Msa1426670:intergenic | 55.0% |
AGCATGGAGCGAAGCCATTC+GGG | + | tig0026056:22881-22900 | Msa1426670:CDS | 55.0% | |
TCACAACTCTCGACGGTGTG+TGG | - | tig0026056:23060-23079 | Msa1426670:intergenic | 55.0% | |
TCACTCTCACTTGGCCCTCC+TGG | + | tig0026056:21826-21845 | Msa1426670:CDS | 60.0% | |
TCACTCTCACTTGGCCCTCC+TGG | + | tig0026056:21826-21845 | Msa1426670:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0026056 | gene | 21754 | 23191 | 21754 | ID=Msa1426670;Name=Msa1426670 |
tig0026056 | mRNA | 21754 | 23191 | 21754 | ID=Msa1426670-mRNA-1;Parent=Msa1426670;Name=Msa1426670-mRNA-1;_AED=0.06;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|306 |
tig0026056 | exon | 21754 | 22176 | 21754 | ID=Msa1426670-mRNA-1:exon:5044;Parent=Msa1426670-mRNA-1 |
tig0026056 | exon | 22694 | 23191 | 22694 | ID=Msa1426670-mRNA-1:exon:5045;Parent=Msa1426670-mRNA-1 |
tig0026056 | CDS | 21754 | 22176 | 21754 | ID=Msa1426670-mRNA-1:cds;Parent=Msa1426670-mRNA-1 |
tig0026056 | CDS | 22694 | 23191 | 22694 | ID=Msa1426670-mRNA-1:cds;Parent=Msa1426670-mRNA-1 |
Gene Sequence |
Protein sequence |