AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1428600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428600 MtrunA17_Chr1g0161461 87.126 334 31 6 1 326 26 355 0.0 563
Msa1428600 MtrunA17_Chr4g0038511 56.846 241 87 5 49 282 6 236 3.33e-77 238
Msa1428600 MtrunA17_Chr4g0060591 43.137 102 58 0 48 149 27 128 5.91e-22 92.4
Msa1428600 MtrunA17_Chr2g0319301 43.000 100 52 2 54 152 74 169 2.09e-18 82.8
Msa1428600 MtrunA17_Chr4g0042041 43.617 94 52 1 54 146 81 174 2.13e-18 82.8
Msa1428600 MtrunA17_Chr2g0323031 43.478 92 51 1 54 144 110 201 1.10e-16 78.6
Msa1428600 MtrunA17_Chr1g0167821 44.554 101 51 2 54 153 95 191 1.36e-16 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428600 AT3G19860.1 51.230 244 110 4 47 288 3 239 8.75e-74 229
Msa1428600 AT3G19860.3 50.198 253 117 4 40 290 27 272 2.52e-73 229
Msa1428600 AT3G19860.2 50.598 251 115 4 40 288 49 292 9.36e-73 228
Msa1428600 AT4G36060.2 39.676 247 97 8 53 287 30 236 2.12e-45 155
Msa1428600 AT4G36060.1 39.676 247 97 8 53 287 48 254 6.97e-45 155
Msa1428600 AT4G36060.4 39.662 237 92 7 53 278 30 226 2.31e-43 150
Msa1428600 AT4G36060.3 39.662 237 92 7 53 278 48 244 6.81e-43 150
Msa1428600 AT3G23210.2 39.130 138 73 5 54 180 138 275 3.04e-18 84.0
Msa1428600 AT3G23210.1 39.130 138 73 5 54 180 167 304 4.97e-18 83.6
Msa1428600 AT5G54680.1 42.000 100 53 2 54 152 76 171 9.12e-18 81.6
Msa1428600 AT3G47640.1 33.645 107 71 0 48 154 26 132 7.67e-16 76.3
Msa1428600 AT3G47640.3 33.645 107 71 0 48 154 26 132 7.67e-16 76.3
Msa1428600 AT3G47640.2 33.645 107 71 0 48 154 26 132 7.67e-16 76.3
Msa1428600 AT1G51070.1 44.681 94 51 1 54 146 71 164 8.05e-16 75.9
Msa1428600 AT1G51070.2 44.681 94 51 1 54 146 137 230 1.90e-15 75.9
Msa1428600 AT4G14410.2 34.028 144 73 4 54 196 129 251 4.80e-14 71.6
Msa1428600 AT4G14410.3 34.028 144 73 4 54 196 129 251 4.80e-14 71.6
Msa1428600 AT4G14410.1 34.028 144 73 4 54 196 135 257 6.38e-14 71.2

Find 116 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGGTCTTGGGGTATAATT+TGG 0.202229 tig0026391:+14954 Msa1428600:three_prime_UTR
TTGGAATATGACCAGGATTT+TGG 0.212723 tig0026391:-14378 Msa1428600:intergenic
CATCAATTGGGAAACGTAAT+AGG 0.223751 tig0026391:+13082 Msa1428600:CDS
CGGTTAATTGACGTTGTATA+TGG 0.259912 tig0026391:+14849 Msa1428600:exon
ATAGGAACGGGGTACGTATA+AGG 0.292057 tig0026391:-14286 Msa1428600:intergenic
TTAAAGACGCTTTCTCTTCT+CGG 0.308272 tig0026391:-14168 Msa1428600:intergenic
TGAATCAGAGGTTGGTGTTT+TGG 0.315567 tig0026391:-12844 Msa1428600:intergenic
TTGGGGTATAATTTGGCTAT+AGG 0.318857 tig0026391:+14961 Msa1428600:three_prime_UTR
CATAGTTGATCCTGGGTCTT+GGG 0.322167 tig0026391:+14943 Msa1428600:three_prime_UTR
TCATAGTTGATCCTGGGTCT+TGG 0.331337 tig0026391:+14942 Msa1428600:three_prime_UTR
TTGTCATTCCGTGGTCTATC+AGG 0.332142 tig0026391:-13936 Msa1428600:intergenic
TAATCTATATTTACACTGTC+TGG 0.334607 tig0026391:-15214 Msa1428600:intergenic
GTTATGATGCCTTAGTAGTT+AGG 0.339943 tig0026391:-15122 Msa1428600:intergenic
CCATCATCAACCACTCTATC+AGG 0.350477 tig0026391:+12877 Msa1428600:CDS
CTCAATGTATATTCCATTCT+CGG 0.354937 tig0026391:+14408 Msa1428600:CDS
TCCCAAAAGATGATGAAAAT+AGG 0.356587 tig0026391:-15294 Msa1428600:intergenic
TTCCAATTCATAGTTGATCC+TGG 0.359125 tig0026391:+14935 Msa1428600:three_prime_UTR
TCAAGCTCTGTTGCCACATC+TGG 0.367803 tig0026391:-14568 Msa1428600:intergenic
TGAGTTTCTCTTCTGTAACT+TGG 0.373968 tig0026391:+15060 Msa1428600:three_prime_UTR
ACCCAGGATCAACTATGAAT+TGG 0.376747 tig0026391:-14937 Msa1428600:intergenic
TGAGCTGATGGCATCTCTAT+TGG 0.379396 tig0026391:-14445 Msa1428600:intergenic
AGGCTGACCGTGAGAAAATC+AGG 0.380020 tig0026391:+13035 Msa1428600:CDS
GAGCCAGTATTCTGCATCTC+AGG 0.388043 tig0026391:+14783 Msa1428600:CDS
ATCTCTATTGGAGGGATAGC+TGG 0.399284 tig0026391:-14433 Msa1428600:intergenic
GAGTTTCTCTTCTGTAACTT+GGG 0.401511 tig0026391:+15061 Msa1428600:three_prime_UTR
ATTGGCATTGGCATAGGAAC+GGG 0.403675 tig0026391:-14298 Msa1428600:intergenic
AACGTCAATTAACCGGCCTT+TGG 0.403957 tig0026391:-14841 Msa1428600:intergenic
ACTTGACCATATGTTAATTC+AGG 0.408385 tig0026391:+14883 Msa1428600:three_prime_UTR
GTCCCTGAGATGCAGAATAC+TGG 0.415172 tig0026391:-14786 Msa1428600:intergenic
CTGTAACTTGGGTAACTCAA+TGG 0.436130 tig0026391:+15072 Msa1428600:three_prime_UTR
TCCAATTCATAGTTGATCCT+GGG 0.439942 tig0026391:+14936 Msa1428600:three_prime_UTR
TTGAATTGTCTCTGTGATGA+TGG 0.441426 tig0026391:-13964 Msa1428600:intergenic
CATATACAACGTCAATTAAC+CGG 0.442135 tig0026391:-14848 Msa1428600:intergenic
TTTGCGGCGGCGGAGGCGGT+GGG 0.450236 tig0026391:-12815 Msa1428600:intergenic
TAGGAACGGGGTACGTATAA+GGG 0.451220 tig0026391:-14285 Msa1428600:intergenic
TGGAGTGTTGCTGACGCTGT+TGG 0.452978 tig0026391:-14821 Msa1428600:intergenic
CTTGCAACTAAAACTAAAGC+TGG 0.454862 tig0026391:+15029 Msa1428600:three_prime_UTR
GAAAGTGGACCAGGAGGGAT+TGG 0.458859 tig0026391:-14316 Msa1428600:intergenic
AAATGACCTGAATTAACATA+TGG 0.463412 tig0026391:-14889 Msa1428600:intergenic
GGGTGAATGGAAAGTGGACC+AGG 0.464255 tig0026391:-14325 Msa1428600:intergenic
TGGTTTCCATAGTAAGGAAA+AGG 0.470758 tig0026391:-14358 Msa1428600:intergenic
GAGCTTGAGCTTAAGATGCC+TGG 0.473388 tig0026391:+14583 Msa1428600:CDS
GCCTGGATCATCAACACAAC+AGG 0.473485 tig0026391:+14600 Msa1428600:CDS
GCATGGCTCTGACTCTCTGC+TGG 0.479835 tig0026391:-14222 Msa1428600:intergenic
TTCTACAACAAAATGATCAA+TGG 0.479992 tig0026391:+14993 Msa1428600:three_prime_UTR
AGGTTGCATAGGTGGGTGAA+TGG 0.481673 tig0026391:-14338 Msa1428600:intergenic
CTAAACACGTGGGATGTAGA+AGG 0.488709 tig0026391:-14472 Msa1428600:intergenic
ATGCCAATGCCAATCCCTCC+TGG 0.495420 tig0026391:+14307 Msa1428600:CDS
GGGATAGCTGGAGCCGAGAA+TGG 0.495557 tig0026391:-14421 Msa1428600:intergenic
GAGATTCTTAAGCATTCAAA+TGG 0.501586 tig0026391:-15191 Msa1428600:intergenic
TACTATGGAAACCAAAATCC+TGG 0.503568 tig0026391:+14367 Msa1428600:CDS
TAAGGAAAAGGTTGCATAGG+TGG 0.507917 tig0026391:-14346 Msa1428600:intergenic
AGAGTCTCGAAGCAAGTCAC+CGG 0.507955 tig0026391:+14501 Msa1428600:CDS
AAGTGTTGTTTATTTAAGAG+TGG 0.509486 tig0026391:-12756 Msa1428600:intergenic
GTGTAGAGAGAAGAGTGAGA+TGG 0.512423 tig0026391:+12979 Msa1428600:intron
AGAGACAATTCAAGTGCTAA+AGG 0.518046 tig0026391:+13974 Msa1428600:CDS
AATCTATATTTACACTGTCT+GGG 0.518140 tig0026391:-15213 Msa1428600:intergenic
TTTCTAGCAACAACAACACT+TGG 0.522874 tig0026391:-13004 Msa1428600:intergenic
TGCAACACATGATCAATCAA+TGG 0.526037 tig0026391:+12790 Msa1428600:CDS
CCTGATAGAGTGGTTGATGA+TGG 0.528302 tig0026391:-12877 Msa1428600:intergenic
AATTGCAGTCCATGGTGGCA+TGG 0.531488 tig0026391:-14239 Msa1428600:intergenic
ATATACATTGAGGGTAGACT+TGG 0.533455 tig0026391:-14397 Msa1428600:intergenic
GCTGATGGCATCTCTATTGG+AGG 0.536435 tig0026391:-14442 Msa1428600:intergenic
CTGTAGGATTGCACATCTAG+AGG 0.537095 tig0026391:+14703 Msa1428600:intron
GCGTTGAGTCCTAACTACTA+AGG 0.538078 tig0026391:+15113 Msa1428600:three_prime_UTR
TTATTTAAGAGTGGGAAGAA+AGG 0.538114 tig0026391:-12747 Msa1428600:intergenic
TTAAATAAACAACACTTCAC+CGG 0.542697 tig0026391:+12762 Msa1428600:five_prime_UTR
CTACATCTTTCTGCATCACT+AGG 0.543929 tig0026391:-14538 Msa1428600:intergenic
GGACCAGGAGGGATTGGCAT+TGG 0.544561 tig0026391:-14310 Msa1428600:intergenic
AGTGTTGTTTATTTAAGAGT+GGG 0.545696 tig0026391:-12755 Msa1428600:intergenic
GGAGGGATTGGCATTGGCAT+AGG 0.546018 tig0026391:-14304 Msa1428600:intergenic
TGCGCAGGTGAATCAGAGGT+TGG 0.546060 tig0026391:-12852 Msa1428600:intergenic
GAATGGTCAATTGCAGTCCA+TGG 0.547989 tig0026391:-14247 Msa1428600:intergenic
GTCAGCAACACTCCAAAGGC+CGG 0.551764 tig0026391:+14829 Msa1428600:CDS
ATAGTTGATCCTGGGTCTTG+GGG 0.557973 tig0026391:+14944 Msa1428600:three_prime_UTR
GAGAATGGAATATACATTGA+GGG 0.561043 tig0026391:-14406 Msa1428600:intergenic
TAGTAAGGAAAAGGTTGCAT+AGG 0.564004 tig0026391:-14349 Msa1428600:intergenic
AAGGAAAAGGTTGCATAGGT+GGG 0.567952 tig0026391:-14345 Msa1428600:intergenic
CGAGAATGGAATATACATTG+AGG 0.568650 tig0026391:-14407 Msa1428600:intergenic
GATTGGCATTGGCATAGGAA+CGG 0.568920 tig0026391:-14299 Msa1428600:intergenic
ACCTGTTGTGTTGATGATCC+AGG 0.571993 tig0026391:-14601 Msa1428600:intergenic
GTAGAAGGATACTGAGCTGA+TGG 0.572163 tig0026391:-14457 Msa1428600:intergenic
GATCATGTGTTGCATTCCGC+CGG 0.575072 tig0026391:-12781 Msa1428600:intergenic
TGGTTGATGATGGGCTGCGC+AGG 0.575159 tig0026391:-12867 Msa1428600:intergenic
TGTTGCTAGAAAAGTTCAGA+AGG 0.582816 tig0026391:+13015 Msa1428600:CDS
CTAGGTCTTCTTCTATGACC+CGG 0.584520 tig0026391:-14520 Msa1428600:intergenic
AGCCAGTATTCTGCATCTCA+GGG 0.590410 tig0026391:+14784 Msa1428600:CDS
CTGATAGAGTGGTTGATGAT+GGG 0.597237 tig0026391:-12876 Msa1428600:intergenic
TGAATTAACATATGGTCAAG+TGG 0.601637 tig0026391:-14881 Msa1428600:intergenic
TGGTATGTAACCTACACATG+AGG 0.605694 tig0026391:-15145 Msa1428600:intergenic
AGAGCATAAATCACTTTCTG+AGG 0.607090 tig0026391:+14028 Msa1428600:CDS
GCATCATAACCCTCATGTGT+AGG 0.611446 tig0026391:+15135 Msa1428600:three_prime_UTR
ATGTAGCGTGTCTCCAGATG+TGG 0.611597 tig0026391:+14555 Msa1428600:CDS
TTGCAACTAAAACTAAAGCT+GGG 0.611947 tig0026391:+15030 Msa1428600:three_prime_UTR
GAGTCTCGAAGCAAGTCACC+GGG 0.616600 tig0026391:+14502 Msa1428600:CDS
CAGCGTCAGCAACACTCCAA+AGG 0.618616 tig0026391:+14825 Msa1428600:CDS
ACATAGTATACCTGATAGAG+TGG 0.619679 tig0026391:-12887 Msa1428600:intergenic
GGTAGACTTGGAATATGACC+AGG 0.620949 tig0026391:-14385 Msa1428600:intergenic
ATGGTTGCCTTGTCATTCCG+TGG 0.623588 tig0026391:-13945 Msa1428600:intergenic
TGAATGGAAAGTGGACCAGG+AGG 0.627507 tig0026391:-14322 Msa1428600:intergenic
GAATGGAAAGTGGACCAGGA+GGG 0.627606 tig0026391:-14321 Msa1428600:intergenic
CAAATTATACCCCAAGACCC+AGG 0.633783 tig0026391:-14953 Msa1428600:intergenic
GGCTACTCATGACAACAGAA+TGG 0.634259 tig0026391:-14264 Msa1428600:intergenic
CTGATGGCATCTCTATTGGA+GGG 0.634505 tig0026391:-14441 Msa1428600:intergenic
GAGTCAGAGCCATGCCACCA+TGG 0.644309 tig0026391:+14230 Msa1428600:CDS
TGATAGACCACGGAATGACA+AGG 0.652628 tig0026391:+13938 Msa1428600:CDS
TTGGCATTGGCATAGGAACG+GGG 0.655443 tig0026391:-14297 Msa1428600:intergenic
AATAAACAACACTTCACCGG+CGG 0.657447 tig0026391:+12765 Msa1428600:five_prime_UTR
GGGCTGCGCAGGTGAATCAG+AGG 0.667682 tig0026391:-12856 Msa1428600:intergenic
GGTATGTAACCTACACATGA+GGG 0.678321 tig0026391:-15144 Msa1428600:intergenic
ATAGGTGGGTGAATGGAAAG+TGG 0.678964 tig0026391:-14331 Msa1428600:intergenic
ATGCAGATCCTGATAGACCA+CGG 0.688242 tig0026391:+13928 Msa1428600:intron
TGGTCAATTGCAGTCCATGG+TGG 0.700069 tig0026391:-14244 Msa1428600:intergenic
AAATAGGCAGAAAATTCACA+TGG 0.705400 tig0026391:-15278 Msa1428600:intergenic
TGACCGTGAGAAAATCAGGA+GGG 0.716148 tig0026391:+13039 Msa1428600:CDS
CTGACCGTGAGAAAATCAGG+AGG 0.717963 tig0026391:+13038 Msa1428600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATGAAAAATAGTAATT+TGG + tig0026391:13574-13593 Msa1428600:intron 10.0%
!! TACAAATATAAAAAAACTTT+GGG - tig0026391:13720-13739 Msa1428600:intergenic 10.0%
!! TTACAAATATAAAAAAACTT+TGG - tig0026391:13721-13740 Msa1428600:intergenic 10.0%
!! ATGTTGATATGATAAAAAAA+GGG - tig0026391:13280-13299 Msa1428600:intergenic 15.0%
!! ATCTAAATTCAAAAAAAACT+AGG + tig0026391:13460-13479 Msa1428600:intron 15.0%
!! TCTAAATTCAAAAAAAACTA+GGG + tig0026391:13461-13480 Msa1428600:intron 15.0%
!!! ACTCATATTTATGATTTTTA+AGG + tig0026391:13655-13674 Msa1428600:intron 15.0%
!! AAAAATGAGTTATATATATG+TGG - tig0026391:15168-15187 Msa1428600:intergenic 15.0%
!!! AAATGATCATTTTCATCAAT+TGG + tig0026391:13069-13088 Msa1428600:CDS 20.0%
!!! AATGATCATTTTCATCAATT+GGG + tig0026391:13070-13089 Msa1428600:CDS 20.0%
!!! GTAAGTTTTTTAATCTTGTT+TGG + tig0026391:13104-13123 Msa1428600:intron 20.0%
!! GATGTTGATATGATAAAAAA+AGG - tig0026391:13281-13300 Msa1428600:intergenic 20.0%
!! CTAAATTCAAAAAAAACTAG+GGG + tig0026391:13462-13481 Msa1428600:intron 20.0%
!! TTTACAGTAAATACTCAAAT+TGG + tig0026391:13516-13535 Msa1428600:intron 20.0%
!! AATTGGTTACGATAAAAATA+TGG + tig0026391:13533-13552 Msa1428600:intron 20.0%
!! TGTAAAACAACAATAATCAA+AGG - tig0026391:13820-13839 Msa1428600:intergenic 20.0%
!!! AGTGTTGTTTATTTAAGAGT+GGG - tig0026391:12758-12777 Msa0595000:intergenic 25.0%
!!! AAGTGTTGTTTATTTAAGAG+TGG - tig0026391:12759-12778 Msa0595000:intergenic 25.0%
! TTAAATAAACAACACTTCAC+CGG + tig0026391:12762-12781 Msa1428600:five_prime_UTR 25.0%
! ATTAAGAAAACATTGCAGTA+AGG + tig0026391:13306-13325 Msa1428600:intron 25.0%
!! AATGTATATTCACACTGATT+TGG - tig0026391:13406-13425 Msa1428600:intergenic 25.0%
!!! AAGCTTGTTTTGAAAGATTT+AGG + tig0026391:13487-13506 Msa1428600:intron 25.0%
!!! TGTTTTGAAAGATTTAGGTT+TGG + tig0026391:13492-13511 Msa1428600:intron 25.0%
!!! AACCACATTTTAAGTTCTTA+AGG - tig0026391:13601-13620 Msa1428600:intergenic 25.0%
! TACATTAGTATTAGTGGAAA+GGG + tig0026391:13794-13813 Msa1428600:intron 25.0%
!! AAGTATTGCCAAATTTGAAA+TGG + tig0026391:13864-13883 Msa1428600:intron 25.0%
! AACAACTACCATTTCAAATT+TGG - tig0026391:13875-13894 Msa1428600:intergenic 25.0%
! AAATGACCTGAATTAACATA+TGG - tig0026391:14892-14911 Msa1428600:intergenic 25.0%
! TTCTACAACAAAATGATCAA+TGG + tig0026391:14993-15012 Msa1428600:three_prime_UTR 25.0%
! AATCTATATTTACACTGTCT+GGG - tig0026391:15216-15235 Msa1428600:intergenic 25.0%
! TAATCTATATTTACACTGTC+TGG - tig0026391:15217-15236 Msa1428600:intergenic 25.0%
TTATTTAAGAGTGGGAAGAA+AGG - tig0026391:12750-12769 Msa0595000:intergenic 30.0%
CAGGATATGATATCTACAAT+TGG + tig0026391:13348-13367 Msa1428600:intron 30.0%
GTCCTTAAGAACTTAAAATG+TGG + tig0026391:13596-13615 Msa1428600:intron 30.0%
TACTAATGTAGTCAACTATG+TGG - tig0026391:13784-13803 Msa1428600:intergenic 30.0%
GTTGACTACATTAGTATTAG+TGG + tig0026391:13788-13807 Msa1428600:intron 30.0%
CTACATTAGTATTAGTGGAA+AGG + tig0026391:13793-13812 Msa1428600:intron 30.0%
GAACATGAATATCTCAACTA+CGG - tig0026391:13898-13917 Msa1428600:intergenic 30.0%
GAGAATGGAATATACATTGA+GGG - tig0026391:14409-14428 Msa1428600:intergenic 30.0%
CTCAATGTATATTCCATTCT+CGG + tig0026391:14408-14427 Msa1428600:CDS 30.0%
!! TTTTAGCACTGAAACAAGTT+TGG - tig0026391:14660-14679 Msa1428600:intergenic 30.0%
CATATACAACGTCAATTAAC+CGG - tig0026391:14851-14870 Msa1428600:intergenic 30.0%
TGAATTAACATATGGTCAAG+TGG - tig0026391:14884-14903 Msa1428600:intergenic 30.0%
ACTTGACCATATGTTAATTC+AGG + tig0026391:14883-14902 Msa1428600:three_prime_UTR 30.0%
!!! AGCTTTAGTTTTAGTTGCAA+GGG - tig0026391:15030-15049 Msa1428600:intergenic 30.0%
TTGCAACTAAAACTAAAGCT+GGG + tig0026391:15030-15049 Msa1428600:three_prime_UTR 30.0%
GAGATTCTTAAGCATTCAAA+TGG - tig0026391:15194-15213 Msa1428600:intergenic 30.0%
AAATAGGCAGAAAATTCACA+TGG - tig0026391:15281-15300 Msa1428600:intergenic 30.0%
TGCAACACATGATCAATCAA+TGG + tig0026391:12790-12809 Msa1428600:CDS 35.0%
ACATAGTATACCTGATAGAG+TGG - tig0026391:12890-12909 Msa1428600:intergenic 35.0%
! TTTCTAGCAACAACAACACT+TGG - tig0026391:13007-13026 Msa1428600:intergenic 35.0%
TGTTGCTAGAAAAGTTCAGA+AGG + tig0026391:13015-13034 Msa1428600:CDS 35.0%
CATCAATTGGGAAACGTAAT+AGG + tig0026391:13082-13101 Msa1428600:CDS 35.0%
! TCACACTTAGTGTTGTTGTT+TGG + tig0026391:13129-13148 Msa1428600:intron 35.0%
CAAATTATTATCCGTGTGTC+TGG + tig0026391:13198-13217 Msa1428600:intron 35.0%
AACATTGCAGTAAGGAAAAC+AGG + tig0026391:13314-13333 Msa1428600:intron 35.0%
!! AGGACCATTTTTCCATTACT+CGG + tig0026391:13675-13694 Msa1428600:intron 35.0%
TTGAATTGTCTCTGTGATGA+TGG - tig0026391:13967-13986 Msa1428600:intergenic 35.0%
AGAGACAATTCAAGTGCTAA+AGG + tig0026391:13974-13993 Msa1428600:CDS 35.0%
AGAGCATAAATCACTTTCTG+AGG + tig0026391:14028-14047 Msa1428600:CDS 35.0%
TTAAAGACGCTTTCTCTTCT+CGG - tig0026391:14171-14190 Msa1428600:intergenic 35.0%
TAGTAAGGAAAAGGTTGCAT+AGG - tig0026391:14352-14371 Msa1428600:intergenic 35.0%
! ATGCAACCTTTTCCTTACTA+TGG + tig0026391:14352-14371 Msa1428600:CDS 35.0%
TGGTTTCCATAGTAAGGAAA+AGG - tig0026391:14361-14380 Msa1428600:intergenic 35.0%
!!! GGATTTTGGTTTCCATAGTA+AGG - tig0026391:14367-14386 Msa1428600:intergenic 35.0%
TACTATGGAAACCAAAATCC+TGG + tig0026391:14367-14386 Msa1428600:CDS 35.0%
! TTGGAATATGACCAGGATTT+TGG - tig0026391:14381-14400 Msa1428600:intergenic 35.0%
ATATACATTGAGGGTAGACT+TGG - tig0026391:14400-14419 Msa1428600:intergenic 35.0%
CGAGAATGGAATATACATTG+AGG - tig0026391:14410-14429 Msa1428600:intergenic 35.0%
ACCTTCATTCTGATTTCTGT+AGG + tig0026391:14687-14706 Msa1428600:intron 35.0%
TCCTACAGAAATCAGAATGA+AGG - tig0026391:14691-14710 Msa1428600:intergenic 35.0%
TTGCACATCTAGAGGAAAAA+AGG + tig0026391:14711-14730 Msa1428600:CDS 35.0%
! AGGAAAAAAGGCAAAGCATT+CGG + tig0026391:14723-14742 Msa1428600:CDS 35.0%
CGGTTAATTGACGTTGTATA+TGG + tig0026391:14849-14868 Msa1428600:exon 35.0%
TTCCAATTCATAGTTGATCC+TGG + tig0026391:14935-14954 Msa1428600:three_prime_UTR 35.0%
TCCAATTCATAGTTGATCCT+GGG + tig0026391:14936-14955 Msa1428600:three_prime_UTR 35.0%
TTGGGGTATAATTTGGCTAT+AGG + tig0026391:14961-14980 Msa1428600:three_prime_UTR 35.0%
!!! GCTTTAGTTTTAGTTGCAAG+GGG - tig0026391:15029-15048 Msa1428600:intergenic 35.0%
!!! CAGCTTTAGTTTTAGTTGCA+AGG - tig0026391:15031-15050 Msa1428600:intergenic 35.0%
CTTGCAACTAAAACTAAAGC+TGG + tig0026391:15029-15048 Msa1428600:three_prime_UTR 35.0%
TGAGTTTCTCTTCTGTAACT+TGG + tig0026391:15060-15079 Msa1428600:three_prime_UTR 35.0%
GAGTTTCTCTTCTGTAACTT+GGG + tig0026391:15061-15080 Msa1428600:three_prime_UTR 35.0%
GTTATGATGCCTTAGTAGTT+AGG - tig0026391:15125-15144 Msa1428600:intergenic 35.0%
AATAAACAACACTTCACCGG+CGG + tig0026391:12765-12784 Msa1428600:five_prime_UTR 40.0%
!! GGTGTTTTGGATGAGTTTTG+CGG - tig0026391:12834-12853 Msa1428600:intergenic 40.0%
!!! TGAATCAGAGGTTGGTGTTT+TGG - tig0026391:12847-12866 Msa1428600:intergenic 40.0%
!! CTGATAGAGTGGTTGATGAT+GGG - tig0026391:12879-12898 Msa1428600:intergenic 40.0%
CACTCAGTTTCGCAAAATCA+CGG + tig0026391:13157-13176 Msa1428600:intron 40.0%
!! GGACCATTTTTCCATTACTC+GGG + tig0026391:13676-13695 Msa1428600:intron 40.0%
!! GACCATTTTTCCATTACTCG+GGG + tig0026391:13677-13696 Msa1428600:intron 40.0%
! ATTTTTCCATTACTCGGGGT+CGG + tig0026391:13681-13700 Msa1428600:intron 40.0%
AAGGAAAAGGTTGCATAGGT+GGG - tig0026391:14348-14367 Msa1428600:intergenic 40.0%
TAAGGAAAAGGTTGCATAGG+TGG - tig0026391:14349-14368 Msa1428600:intergenic 40.0%
! CTCTTTTCGACTAAACACGT+GGG - tig0026391:14485-14504 Msa1428600:intergenic 40.0%
! ACTCTTTTCGACTAAACACG+TGG - tig0026391:14486-14505 Msa1428600:intergenic 40.0%
CTACATCTTTCTGCATCACT+AGG - tig0026391:14541-14560 Msa1428600:intergenic 40.0%
ACCCAGGATCAACTATGAAT+TGG - tig0026391:14940-14959 Msa1428600:intergenic 40.0%
CTGTAACTTGGGTAACTCAA+TGG + tig0026391:15072-15091 Msa1428600:three_prime_UTR 40.0%
GGTATGTAACCTACACATGA+GGG - tig0026391:15147-15166 Msa1428600:intergenic 40.0%
TGGTATGTAACCTACACATG+AGG - tig0026391:15148-15167 Msa1428600:intergenic 40.0%
!! GTTTTGGATGAGTTTTGCGG+CGG - tig0026391:12831-12850 Msa1428600:intergenic 45.0%
!! CCTGATAGAGTGGTTGATGA+TGG - tig0026391:12880-12899 Msa1428600:intergenic 45.0%
CCATCATCAACCACTCTATC+AGG + tig0026391:12877-12896 Msa1428600:CDS 45.0%
GTGTAGAGAGAAGAGTGAGA+TGG + tig0026391:12979-12998 Msa1428600:intron 45.0%
TGACCGTGAGAAAATCAGGA+GGG + tig0026391:13039-13058 Msa1428600:CDS 45.0%
! GAACCCTCCTGATTTTCTCA+CGG - tig0026391:13045-13064 Msa1428600:intergenic 45.0%
GAGTTGTGTTCTATGAAGCG+CGG - tig0026391:13227-13246 Msa1428600:intergenic 45.0%
TGATAAAAAAAGGGCCGAGC+TGG - tig0026391:13271-13290 Msa1428600:intergenic 45.0%
! GACCCCGAGTAATGGAAAAA+TGG - tig0026391:13682-13701 Msa1428600:intergenic 45.0%
! TTTTTCCATTACTCGGGGTC+GGG + tig0026391:13682-13701 Msa1428600:intron 45.0%
ATGCAGATCCTGATAGACCA+CGG + tig0026391:13928-13947 Msa1428600:intron 45.0%
TTGTCATTCCGTGGTCTATC+AGG - tig0026391:13939-13958 Msa1428600:intergenic 45.0%
TGATAGACCACGGAATGACA+AGG + tig0026391:13938-13957 Msa1428600:CDS 45.0%
GAATGGTCAATTGCAGTCCA+TGG - tig0026391:14250-14269 Msa1428600:intergenic 45.0%
GGCTACTCATGACAACAGAA+TGG - tig0026391:14267-14286 Msa1428600:intergenic 45.0%
TAGGAACGGGGTACGTATAA+GGG - tig0026391:14288-14307 Msa1428600:intergenic 45.0%
ATAGGAACGGGGTACGTATA+AGG - tig0026391:14289-14308 Msa1428600:intergenic 45.0%
!! ATTGGCATTGGCATAGGAAC+GGG - tig0026391:14301-14320 Msa1428600:intergenic 45.0%
!! GATTGGCATTGGCATAGGAA+CGG - tig0026391:14302-14321 Msa1428600:intergenic 45.0%
ATAGGTGGGTGAATGGAAAG+TGG - tig0026391:14334-14353 Msa1428600:intergenic 45.0%
GGTAGACTTGGAATATGACC+AGG - tig0026391:14388-14407 Msa1428600:intergenic 45.0%
ATCTCTATTGGAGGGATAGC+TGG - tig0026391:14436-14455 Msa1428600:intergenic 45.0%
CTGATGGCATCTCTATTGGA+GGG - tig0026391:14444-14463 Msa1428600:intergenic 45.0%
TGAGCTGATGGCATCTCTAT+TGG - tig0026391:14448-14467 Msa1428600:intergenic 45.0%
GTAGAAGGATACTGAGCTGA+TGG - tig0026391:14460-14479 Msa1428600:intergenic 45.0%
CTAAACACGTGGGATGTAGA+AGG - tig0026391:14475-14494 Msa1428600:intergenic 45.0%
CTAGGTCTTCTTCTATGACC+CGG - tig0026391:14523-14542 Msa1428600:intergenic 45.0%
!! ACCTGTTGTGTTGATGATCC+AGG - tig0026391:14604-14623 Msa1428600:intergenic 45.0%
CTGTAGGATTGCACATCTAG+AGG + tig0026391:14703-14722 Msa1428600:intron 45.0%
AGCCAGTATTCTGCATCTCA+GGG + tig0026391:14784-14803 Msa1428600:CDS 45.0%
AACGTCAATTAACCGGCCTT+TGG - tig0026391:14844-14863 Msa1428600:intergenic 45.0%
TCATAGTTGATCCTGGGTCT+TGG + tig0026391:14942-14961 Msa1428600:three_prime_UTR 45.0%
CATAGTTGATCCTGGGTCTT+GGG + tig0026391:14943-14962 Msa1428600:three_prime_UTR 45.0%
ATAGTTGATCCTGGGTCTTG+GGG + tig0026391:14944-14963 Msa1428600:three_prime_UTR 45.0%
CAAATTATACCCCAAGACCC+AGG - tig0026391:14956-14975 Msa1428600:intergenic 45.0%
CTGGGTCTTGGGGTATAATT+TGG + tig0026391:14954-14973 Msa1428600:three_prime_UTR 45.0%
GCGTTGAGTCCTAACTACTA+AGG + tig0026391:15113-15132 Msa1428600:three_prime_UTR 45.0%
GCATCATAACCCTCATGTGT+AGG + tig0026391:15135-15154 Msa1428600:three_prime_UTR 45.0%
GATCATGTGTTGCATTCCGC+CGG - tig0026391:12784-12803 Msa1428600:intergenic 50.0%
AGGCTGACCGTGAGAAAATC+AGG + tig0026391:13035-13054 Msa1428600:CDS 50.0%
CTGACCGTGAGAAAATCAGG+AGG + tig0026391:13038-13057 Msa1428600:CDS 50.0%
AAAACAGGCAGTCACGAGTC+AGG + tig0026391:13329-13348 Msa1428600:intron 50.0%
! TTTTCCATTACTCGGGGTCG+GGG + tig0026391:13683-13702 Msa1428600:intron 50.0%
ATGGTTGCCTTGTCATTCCG+TGG - tig0026391:13948-13967 Msa1428600:intergenic 50.0%
CTGAGGAGTCACACGAAGTA+AGG + tig0026391:14045-14064 Msa1428600:intron 50.0%
AATTGCAGTCCATGGTGGCA+TGG - tig0026391:14242-14261 Msa1428600:intergenic 50.0%
TGGTCAATTGCAGTCCATGG+TGG - tig0026391:14247-14266 Msa1428600:intergenic 50.0%
!! TTGGCATTGGCATAGGAACG+GGG - tig0026391:14300-14319 Msa1428600:intergenic 50.0%
GAATGGAAAGTGGACCAGGA+GGG - tig0026391:14324-14343 Msa1428600:intergenic 50.0%
TGAATGGAAAGTGGACCAGG+AGG - tig0026391:14325-14344 Msa1428600:intergenic 50.0%
AGGTTGCATAGGTGGGTGAA+TGG - tig0026391:14341-14360 Msa1428600:intergenic 50.0%
GCTGATGGCATCTCTATTGG+AGG - tig0026391:14445-14464 Msa1428600:intergenic 50.0%
AGAGTCTCGAAGCAAGTCAC+CGG + tig0026391:14501-14520 Msa1428600:CDS 50.0%
ATGTAGCGTGTCTCCAGATG+TGG + tig0026391:14555-14574 Msa1428600:CDS 50.0%
TCAAGCTCTGTTGCCACATC+TGG - tig0026391:14571-14590 Msa1428600:intergenic 50.0%
GAGCTTGAGCTTAAGATGCC+TGG + tig0026391:14583-14602 Msa1428600:CDS 50.0%
GCCTGGATCATCAACACAAC+AGG + tig0026391:14600-14619 Msa1428600:CDS 50.0%
GAGCCAGTATTCTGCATCTC+AGG + tig0026391:14783-14802 Msa1428600:CDS 50.0%
GTCCCTGAGATGCAGAATAC+TGG - tig0026391:14789-14808 Msa1428600:intergenic 50.0%
! TTGGATGAGTTTTGCGGCGG+CGG - tig0026391:12828-12847 Msa1428600:intergenic 55.0%
TGCGCAGGTGAATCAGAGGT+TGG - tig0026391:12855-12874 Msa1428600:intergenic 55.0%
!! GGAGGGATTGGCATTGGCAT+AGG - tig0026391:14307-14326 Msa1428600:intergenic 55.0%
ATGCCAATGCCAATCCCTCC+TGG + tig0026391:14307-14326 Msa1428600:CDS 55.0%
GAAAGTGGACCAGGAGGGAT+TGG - tig0026391:14319-14338 Msa1428600:intergenic 55.0%
GGGTGAATGGAAAGTGGACC+AGG - tig0026391:14328-14347 Msa1428600:intergenic 55.0%
GAGTCTCGAAGCAAGTCACC+GGG + tig0026391:14502-14521 Msa1428600:CDS 55.0%
!! TGGAGTGTTGCTGACGCTGT+TGG - tig0026391:14824-14843 Msa1428600:intergenic 55.0%
CAGCGTCAGCAACACTCCAA+AGG + tig0026391:14825-14844 Msa1428600:CDS 55.0%
GTCAGCAACACTCCAAAGGC+CGG + tig0026391:14829-14848 Msa1428600:CDS 55.0%
!! TGGTTGATGATGGGCTGCGC+AGG - tig0026391:12870-12889 Msa1428600:intergenic 60.0%
AAGCGCGGACACCAGACACA+CGG - tig0026391:13212-13231 Msa1428600:intergenic 60.0%
! CTGGCTTGCACAGCTCGTAG+TGG - tig0026391:13252-13271 Msa1428600:intergenic 60.0%
ACGAGCTGTGCAAGCCAGCT+CGG + tig0026391:13254-13273 Msa1428600:intron 60.0%
TTGTCCCCGACCCCGAGTAA+TGG - tig0026391:13690-13709 Msa1428600:intergenic 60.0%
!! GCATGGCTCTGACTCTCTGC+TGG - tig0026391:14225-14244 Msa1428600:intergenic 60.0%
GAGTCAGAGCCATGCCACCA+TGG + tig0026391:14230-14249 Msa1428600:CDS 60.0%
! GGACCAGGAGGGATTGGCAT+TGG - tig0026391:14313-14332 Msa1428600:intergenic 60.0%
GGGATAGCTGGAGCCGAGAA+TGG - tig0026391:14424-14443 Msa1428600:intergenic 60.0%
! GATGAGTTTTGCGGCGGCGG+AGG - tig0026391:12825-12844 Msa1428600:intergenic 65.0%
GGGCTGCGCAGGTGAATCAG+AGG - tig0026391:12859-12878 Msa1428600:intergenic 65.0%
! GAGTTTTGCGGCGGCGGAGG+CGG - tig0026391:12822-12841 Msa1428600:intergenic 70.0%
TTTGCGGCGGCGGAGGCGGT+GGG - tig0026391:12818-12837 Msa1428600:intergenic 75.0%
! TTTTGCGGCGGCGGAGGCGG+TGG - tig0026391:12819-12838 Msa1428600:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0026391 gene 12744 15302 12744 ID=Msa1428600;Name=Msa1428600
tig0026391 mRNA 12744 15302 12744 ID=Msa1428600-mRNA-1;Parent=Msa1428600;Name=Msa1428600-mRNA-1;_AED=0.07;_eAED=0.07;_QI=45|1|1|1|1|1|5|447|326
tig0026391 exon 12744 12898 12744 ID=Msa1428600-mRNA-1:exon:6055;Parent=Msa1428600-mRNA-1
tig0026391 exon 12985 13103 12985 ID=Msa1428600-mRNA-1:exon:6056;Parent=Msa1428600-mRNA-1
tig0026391 exon 13934 14061 13934 ID=Msa1428600-mRNA-1:exon:6057;Parent=Msa1428600-mRNA-1
tig0026391 exon 14145 14621 14145 ID=Msa1428600-mRNA-1:exon:6058;Parent=Msa1428600-mRNA-1
tig0026391 exon 14709 15302 14709 ID=Msa1428600-mRNA-1:exon:6059;Parent=Msa1428600-mRNA-1
tig0026391 five_prime_UTR 12744 12788 12744 ID=Msa1428600-mRNA-1:five_prime_utr;Parent=Msa1428600-mRNA-1
tig0026391 CDS 12789 12898 12789 ID=Msa1428600-mRNA-1:cds;Parent=Msa1428600-mRNA-1
tig0026391 CDS 12985 13103 12985 ID=Msa1428600-mRNA-1:cds;Parent=Msa1428600-mRNA-1
tig0026391 CDS 13934 14061 13934 ID=Msa1428600-mRNA-1:cds;Parent=Msa1428600-mRNA-1
tig0026391 CDS 14145 14621 14145 ID=Msa1428600-mRNA-1:cds;Parent=Msa1428600-mRNA-1
tig0026391 CDS 14709 14855 14709 ID=Msa1428600-mRNA-1:cds;Parent=Msa1428600-mRNA-1
tig0026391 three_prime_UTR 14856 15302 14856 ID=Msa1428600-mRNA-1:three_prime_utr;Parent=Msa1428600-mRNA-1
Gene Sequence

>Msa1428600

ATGCAACACATGATCAATCAATGGAACCCACCGCCTCCGCCGCCGCAAAACTCATCCAAAACACCAACCTCTGATTCACCTGCGCAGCCCATCATCAACCACTCTATCAGAGAGAAGAGTGAGATGGAACCAAGTGTTGTTGTTGCTAGAAAAGTTCAGAAGGCTGACCGTGAGAAAATCAGGAGGGTTCGTTTAAATGATCATTTTCATCAATTGGGAAACGTAATAGATCCTGATAGACCACGGAATGACAAGGCAACCATCATCACAGAGACAATTCAAGTGCTAAAGGACATAACATCTGAAGTTGATAGACTGAAAACAGAGCATAAATCACTTTCTGAGGAGTCACACGAACTAATAAAAGAAAAGAATGAACTCCGAGAAGAGAAAGCGTCTTTAAAATCTGATATAGAAAATCTTAATTCTCAGTACCAGCAGAGAGTCAGAGCCATGCCACCATGGACTGCAATTGACCATTCTGTTGTCATGAGTAGCCCTTATACGTACCCCGTTCCTATGCCAATGCCAATCCCTCCTGGTCCACTTTCCATTCACCCACCTATGCAACCTTTTCCTTACTATGGAAACCAAAATCCTGGTCATATTCCAAGTCTACCCTCAATGTATATTCCATTCTCGGCTCCAGCTATCCCTCCAATAGAGATGCCATCAGCTCAGTATCCTTCTACATCCCACGTGTTTAGTCGAAAAGAGTCTCGAAGCAAGTCACCGGGTCATAGAAGAAGACCTAGTGATGCAGAAAGATGTAGCGTGTCTCCAGATGTGGCAACAGAGCTTGAGCTTAAGATGCCTGGATCATCAACACAACAGGATTGCACATCTAGAGGAAAAAAGGCAAAGCATTCGGTGATTAGTGATAGAATCATCATAGATGAGAGTGCTTCGAGCCAGTATTCTGCATCTCAGGGACTTCAAGATAGCTCCAACAGCGTCAGCAACACTCCAAAGGCCGGTTAA

Protein sequence

>Msa1428600

MQHMINQWNPPPPPPQNSSKTPTSDSPAQPIINHSIREKSEMEPSVVVARKVQKADREKIRRVRLNDHFHQLGNVIDPDRPRNDKATIITETIQVLKDITSEVDRLKTEHKSLSEESHELIKEKNELREEKASLKSDIENLNSQYQQRVRAMPPWTAIDHSVVMSSPYTYPVPMPMPIPPGPLSIHPPMQPFPYYGNQNPGHIPSLPSMYIPFSAPAIPPIEMPSAQYPSTSHVFSRKESRSKSPGHRRRPSDAERCSVSPDVATELELKMPGSSTQQDCTSRGKKAKHSVISDRIIIDESASSQYSASQGLQDSSNSVSNTPKAG*