AlfalfaGEDB | Msa1428600

M. sativa cultivar zhongmu-4 / Msa1428600

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428600	XP_013466599.1	87.126	334	31	6	1	326	26	355	0.0	563

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428600	sp\|Q9LT23\|BH121_ARATH	50.598	251	115	4	40	288	49	292	9.21e-72	228

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428600	A0A072VR73	87.126	334	31	6	1	326	26	355	0.0	563

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TFs/TRs:

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Gene ID	Type	Classification
Msa1428600	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428600	MtrunA17_Chr1g0161461	87.126	334	31	6	1	326	26	355	0.0	563
Msa1428600	MtrunA17_Chr4g0038511	56.846	241	87	5	49	282	6	236	3.33e-77	238
Msa1428600	MtrunA17_Chr4g0060591	43.137	102	58	0	48	149	27	128	5.91e-22	92.4
Msa1428600	MtrunA17_Chr2g0319301	43.000	100	52	2	54	152	74	169	2.09e-18	82.8
Msa1428600	MtrunA17_Chr4g0042041	43.617	94	52	1	54	146	81	174	2.13e-18	82.8
Msa1428600	MtrunA17_Chr2g0323031	43.478	92	51	1	54	144	110	201	1.10e-16	78.6
Msa1428600	MtrunA17_Chr1g0167821	44.554	101	51	2	54	153	95	191	1.36e-16	78.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428600	AT3G19860.1	51.230	244	110	4	47	288	3	239	8.75e-74	229
Msa1428600	AT3G19860.3	50.198	253	117	4	40	290	27	272	2.52e-73	229
Msa1428600	AT3G19860.2	50.598	251	115	4	40	288	49	292	9.36e-73	228
Msa1428600	AT4G36060.2	39.676	247	97	8	53	287	30	236	2.12e-45	155
Msa1428600	AT4G36060.1	39.676	247	97	8	53	287	48	254	6.97e-45	155
Msa1428600	AT4G36060.4	39.662	237	92	7	53	278	30	226	2.31e-43	150
Msa1428600	AT4G36060.3	39.662	237	92	7	53	278	48	244	6.81e-43	150
Msa1428600	AT3G23210.2	39.130	138	73	5	54	180	138	275	3.04e-18	84.0
Msa1428600	AT3G23210.1	39.130	138	73	5	54	180	167	304	4.97e-18	83.6
Msa1428600	AT5G54680.1	42.000	100	53	2	54	152	76	171	9.12e-18	81.6

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Find 116 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAGGCAGAAAATTCACA+TGG	0.705400	tig0026391:-15278	Msa1428600:intergenic
AAATGACCTGAATTAACATA+TGG	0.463412	tig0026391:-14889	Msa1428600:intergenic
AACGTCAATTAACCGGCCTT+TGG	0.403957	tig0026391:-14841	Msa1428600:intergenic
AAGGAAAAGGTTGCATAGGT+GGG	0.567952	tig0026391:-14345	Msa1428600:intergenic
AAGTGTTGTTTATTTAAGAG+TGG	0.509486	tig0026391:-12756	Msa1428600:intergenic
AATAAACAACACTTCACCGG+CGG	0.657447	tig0026391:+12765	Msa1428600:five_prime_UTR
AATCTATATTTACACTGTCT+GGG	0.518140	tig0026391:-15213	Msa1428600:intergenic
AATTGCAGTCCATGGTGGCA+TGG	0.531488	tig0026391:-14239	Msa1428600:intergenic
ACATAGTATACCTGATAGAG+TGG	0.619679	tig0026391:-12887	Msa1428600:intergenic
ACCCAGGATCAACTATGAAT+TGG	0.376747	tig0026391:-14937	Msa1428600:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATTTAAGAGTGGGAAGAA+AGG	-	tig0026391:12750-12769	Msa0595000:intergenic	30.0%
CAGGATATGATATCTACAAT+TGG	+	tig0026391:13348-13367	Msa1428600:intron	30.0%
GTCCTTAAGAACTTAAAATG+TGG	+	tig0026391:13596-13615	Msa1428600:intron	30.0%
TACTAATGTAGTCAACTATG+TGG	-	tig0026391:13784-13803	Msa1428600:intergenic	30.0%
GTTGACTACATTAGTATTAG+TGG	+	tig0026391:13788-13807	Msa1428600:intron	30.0%
CTACATTAGTATTAGTGGAA+AGG	+	tig0026391:13793-13812	Msa1428600:intron	30.0%
GAACATGAATATCTCAACTA+CGG	-	tig0026391:13898-13917	Msa1428600:intergenic	30.0%
GAGAATGGAATATACATTGA+GGG	-	tig0026391:14409-14428	Msa1428600:intergenic	30.0%
CTCAATGTATATTCCATTCT+CGG	+	tig0026391:14408-14427	Msa1428600:CDS	30.0%
CATATACAACGTCAATTAAC+CGG	-	tig0026391:14851-14870	Msa1428600:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0026391	gene	12744	15302	12744	ID=Msa1428600;Name=Msa1428600
tig0026391	mRNA	12744	15302	12744	ID=Msa1428600-mRNA-1;Parent=Msa1428600;Name=Msa1428600-mRNA-1;_AED=0.07;_eAED=0.07;_QI=45\|1\|1\|1\|1\|1\|5\|447\|326
tig0026391	exon	12744	12898	12744	ID=Msa1428600-mRNA-1:exon:6055;Parent=Msa1428600-mRNA-1
tig0026391	exon	12985	13103	12985	ID=Msa1428600-mRNA-1:exon:6056;Parent=Msa1428600-mRNA-1
tig0026391	exon	13934	14061	13934	ID=Msa1428600-mRNA-1:exon:6057;Parent=Msa1428600-mRNA-1
tig0026391	exon	14145	14621	14145	ID=Msa1428600-mRNA-1:exon:6058;Parent=Msa1428600-mRNA-1
tig0026391	exon	14709	15302	14709	ID=Msa1428600-mRNA-1:exon:6059;Parent=Msa1428600-mRNA-1
tig0026391	five_prime_UTR	12744	12788	12744	ID=Msa1428600-mRNA-1:five_prime_utr;Parent=Msa1428600-mRNA-1
tig0026391	CDS	12789	12898	12789	ID=Msa1428600-mRNA-1:cds;Parent=Msa1428600-mRNA-1
tig0026391	CDS	12985	13103	12985	ID=Msa1428600-mRNA-1:cds;Parent=Msa1428600-mRNA-1
tig0026391	CDS	13934	14061	13934	ID=Msa1428600-mRNA-1:cds;Parent=Msa1428600-mRNA-1
tig0026391	CDS	14145	14621	14145	ID=Msa1428600-mRNA-1:cds;Parent=Msa1428600-mRNA-1
tig0026391	CDS	14709	14855	14709	ID=Msa1428600-mRNA-1:cds;Parent=Msa1428600-mRNA-1
tig0026391	three_prime_UTR	14856	15302	14856	ID=Msa1428600-mRNA-1:three_prime_utr;Parent=Msa1428600-mRNA-1

Gene Sequence

>Msa1428600

ATGCAACACATGATCAATCAATGGAACCCACCGCCTCCGCCGCCGCAAAACTCATCCAAAACACCAACCTCTGATTCACCTGCGCAGCCCATCATCAACCACTCTATCAGAGAGAAGAGTGAGATGGAACCAAGTGTTGTTGTTGCTAGAAAAGTTCAGAAGGCTGACCGTGAGAAAATCAGGAGGGTTCGTTTAAATGATCATTTTCATCAATTGGGAAACGTAATAGATCCTGATAGACCACGGAATGACAAGGCAACCATCATCACAGAGACAATTCAAGTGCTAAAGGACATAACATCTGAAGTTGATAGACTGAAAACAGAGCATAAATCACTTTCTGAGGAGTCACACGAACTAATAAAAGAAAAGAATGAACTCCGAGAAGAGAAAGCGTCTTTAAAATCTGATATAGAAAATCTTAATTCTCAGTACCAGCAGAGAGTCAGAGCCATGCCACCATGGACTGCAATTGACCATTCTGTTGTCATGAGTAGCCCTTATACGTACCCCGTTCCTATGCCAATGCCAATCCCTCCTGGTCCACTTTCCATTCACCCACCTATGCAACCTTTTCCTTACTATGGAAACCAAAATCCTGGTCATATTCCAAGTCTACCCTCAATGTATATTCCATTCTCGGCTCCAGCTATCCCTCCAATAGAGATGCCATCAGCTCAGTATCCTTCTACATCCCACGTGTTTAGTCGAAAAGAGTCTCGAAGCAAGTCACCGGGTCATAGAAGAAGACCTAGTGATGCAGAAAGATGTAGCGTGTCTCCAGATGTGGCAACAGAGCTTGAGCTTAAGATGCCTGGATCATCAACACAACAGGATTGCACATCTAGAGGAAAAAAGGCAAAGCATTCGGTGATTAGTGATAGAATCATCATAGATGAGAGTGCTTCGAGCCAGTATTCTGCATCTCAGGGACTTCAAGATAGCTCCAACAGCGTCAGCAACACTCCAAAGGCCGGTTAA

Protein sequence

>Msa1428600

MQHMINQWNPPPPPPQNSSKTPTSDSPAQPIINHSIREKSEMEPSVVVARKVQKADREKIRRVRLNDHFHQLGNVIDPDRPRNDKATIITETIQVLKDITSEVDRLKTEHKSLSEESHELIKEKNELREEKASLKSDIENLNSQYQQRVRAMPPWTAIDHSVVMSSPYTYPVPMPMPIPPGPLSIHPPMQPFPYYGNQNPGHIPSLPSMYIPFSAPAIPPIEMPSAQYPSTSHVFSRKESRSKSPGHRRRPSDAERCSVSPDVATELELKMPGSSTQQDCTSRGKKAKHSVISDRIIIDESASSQYSASQGLQDSSNSVSNTPKAG*