AlfalfaGEDB | Msa1429020

M. sativa cultivar zhongmu-4 / Msa1429020

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010199 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0048507 GO:0048532 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090691 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1429020	XP_039688131.1	92.412	369	12	8	1	366	1	356	0.0	657

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1429020	sp\|Q9S851\|NAC31_ARATH	74.317	183	40	5	1	182	1	177	8.30e-93	283

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1429020	G7J6G2	89.160	369	13	9	1	366	1	345	0.0	621

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TFs/TRs:

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Gene ID	Type	Classification
Msa1429020	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1429020	MtrunA17_Chr3g0144271	93.642	173	10	1	1	173	1	172	1.10e-114	340
Msa1429020	MtrunA17_Chr3g0144271	87.745	204	11	6	166	366	226	418	1.31e-106	319
Msa1429020	MtrunA17_Chr2g0316971	72.152	158	37	4	23	177	23	176	2.51e-75	238
Msa1429020	MtrunA17_Chr1g0147421	62.712	177	58	3	6	178	6	178	1.16e-73	233
Msa1429020	MtrunA17_Chr3g0139331	64.198	162	53	3	20	181	8	164	6.18e-71	225
Msa1429020	MtrunA17_Chr6g0453451	50.000	256	108	9	1	255	1	237	1.30e-70	223
Msa1429020	MtrunA17_Chr6g0484441	66.038	159	45	4	20	177	2	152	2.67e-70	223
Msa1429020	MtrunA17_Chr7g0253011	51.101	227	95	7	23	238	17	238	5.33e-69	221
Msa1429020	MtrunA17_Chr4g0060931	53.363	223	81	8	7	221	2	209	1.01e-68	220
Msa1429020	MtrunA17_Chr3g0091921	63.372	172	51	5	8	177	6	167	1.52e-68	218

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1429020	AT1G76420.1	74.317	183	40	5	1	182	1	177	8.44e-94	283
Msa1429020	AT5G61430.1	57.576	231	74	10	7	222	2	223	1.65e-75	237
Msa1429020	AT2G24430.2	65.089	169	53	4	11	177	2	166	4.18e-75	235
Msa1429020	AT2G24430.1	65.089	169	53	4	11	177	2	166	4.18e-75	235
Msa1429020	AT3G18400.1	68.354	158	44	3	20	177	2	153	7.97e-73	229
Msa1429020	AT3G15170.1	54.762	210	86	5	18	222	15	220	2.34e-72	228
Msa1429020	AT5G53950.1	67.901	162	45	4	19	177	13	170	2.15e-71	228
Msa1429020	AT5G39610.1	67.722	158	46	3	23	179	20	173	2.31e-71	224
Msa1429020	AT5G07680.1	59.799	199	65	8	15	205	8	199	2.87e-71	226
Msa1429020	AT5G07680.2	61.053	190	60	7	23	205	3	185	1.44e-70	223

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Find 101 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGAGAGTGTAAA+CGG	0.494516	tig0026425:-45479	None:intergenic
AAAATACCTGGAAGTTCCCA+TGG	0.594367	tig0026425:-44866	None:intergenic
AACCTTAGAAGCCAAATAAA+AGG	0.317144	tig0026425:-44783	None:intergenic
AACGAACAAGGTCTACCACC+TGG	0.649637	tig0026425:+44725	Msa1429020:CDS
AAGCTTAGCTAACTGGACAT+AGG	0.562681	tig0026425:-47338	None:intergenic
AAGGTCTACCACCTGGTTTC+AGG	0.277471	tig0026425:+44732	Msa1429020:CDS
AAGGTTGGAATGAAGGCAAT+GGG	0.499808	tig0026425:-46790	None:intergenic
AATGAATTAGTTGCAAGTAA+AGG	0.523374	tig0026425:-46716	None:intergenic
AATTCACTACTCCAAATTCA+AGG	0.492982	tig0026425:+46635	Msa1429020:CDS
ACAAACAGAGCAACAAGTGC+TGG	0.530692	tig0026425:+45315	Msa1429020:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATGAAAAGAAAAACGAACA+AGG	+	tig0026425:44713-44732	Msa1429020:CDS	30.0%
TAATGAGTTCTTCATCAGTT+GGG	-	tig0026425:44763-44782	None:intergenic	30.0%
AACCTTAGAAGCCAAATAAA+AGG	-	tig0026425:44786-44805	None:intergenic	30.0%
AAATAGTTCAAATTCCTCTC+AGG	+	tig0026425:44964-44983	Msa1429020:intron	30.0%
TATGTCCACTTATGTTAAGT+AGG	+	tig0026425:45159-45178	Msa1429020:intron	30.0%
ATGTCCACTTATGTTAAGTA+GGG	+	tig0026425:45160-45179	Msa1429020:intron	30.0%
ACATCAAAAAACTACCCAAA+TGG	-	tig0026425:45707-45726	None:intergenic	30.0%
TTTAGTGGAAAGATTAGAAG+AGG	+	tig0026425:45888-45907	Msa1429020:intron	30.0%
TTAGTGGAAAGATTAGAAGA+GGG	+	tig0026425:45889-45908	Msa1429020:intron	30.0%
AAGATCTTCTTTCCATTGTT+TGG	+	tig0026425:45928-45947	Msa1429020:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0026425	gene	44671	47457	44671	ID=Msa1429020;Name=Msa1429020
tig0026425	mRNA	44671	47457	44671	ID=Msa1429020-mRNA-1;Parent=Msa1429020;Name=Msa1429020-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|1\|0.33\|1\|1\|1\|3\|265\|366
tig0026425	exon	44671	44881	44671	ID=Msa1429020-mRNA-1:exon:6242;Parent=Msa1429020-mRNA-1
tig0026425	exon	45241	45524	45241	ID=Msa1429020-mRNA-1:exon:6243;Parent=Msa1429020-mRNA-1
tig0026425	exon	46587	47457	46587	ID=Msa1429020-mRNA-1:exon:6244;Parent=Msa1429020-mRNA-1
tig0026425	CDS	44671	44881	44671	ID=Msa1429020-mRNA-1:cds;Parent=Msa1429020-mRNA-1
tig0026425	CDS	45241	45524	45241	ID=Msa1429020-mRNA-1:cds;Parent=Msa1429020-mRNA-1
tig0026425	CDS	46587	47192	46587	ID=Msa1429020-mRNA-1:cds;Parent=Msa1429020-mRNA-1
tig0026425	three_prime_UTR	47193	47457	47193	ID=Msa1429020-mRNA-1:three_prime_utr;Parent=Msa1429020-mRNA-1

Gene Sequence

>Msa1429020

ATGATGTTAGCAATGGAAGAAGTACTATGTGAACTTAGTGATCATGAAAAGAAAAACGAACAAGGTCTACCACCTGGTTTCAGGTTTCACCCAACTGATGAAGAACTCATTACCTTTTATTTGGCTTCTAAGGTTTTCAAAAATACTTATTTCAATAATGTCAAGTTTGCTGAAGTTGACCTCAATAGATGTGAGCCATGGGAACTTCCAGAAATGGCAAAGATGGGAGAAAGAGAGTGGTATCTGTTCAGCTTGAGAGACAGAAAATACCCAACTGGGCTTAGAACAAACAGAGCAACAAGTGCTGGTTACTGGAAAGCAACTGGGAAGGACAAGGAAGTTTACAGCTGCAGTAGTAGTAGATCCCTTTTGGGGATGAAGAAGACCCTTGTTTTCTACAAAGGAAGGGCCCCTCGTGGTGAAAAGACCAAATGGGTCATGCATGAGTACCGTTTACACTCTCATCACTTTTCTCCTTCTCATACCACCTGCAAGGAAGAGTGGGTGATATGCAGGATATTTCATAAATCAGGGGAAAAGAGAAATTCACTACTCCAAATTCAAGGACATTTAGGTGGTAATCCTAATTTAACCCCCCAAAAAAGCTGTTTACCTCCTACACCACCTTTACTTGCAACTAATTCATTTACACAACTAGACCAAAATGACCAATTACTCTCACATTCTCATAATATTTTCCCATTGCCTTCATTCCAACCTTCCTTTTCAATGATCAATCACACCACCAGAAACAACAATAATAATCCATCTTCAGAACTACTCTTCAAGTCACAACAATATTACACCATGAAGCAGCAGACCATTCCAAAAACAGAAGCTACTTTCTATGATCAGCACCAATCACAATCACAATCACAATCAATAGATGATGCTCTTAACCTAAGATGGATTATTGACAATAATAATAATACTAATAATTATGAAAACTCCTTATTCCCTGTGGAGATGGAGATGGAGATGGATGGTGCTGCTCATGATCTGATTGCATTCTCAGGAGCTGCTACAAATGCTGAATTTAGGGACATGACAATTATTAACAGTAGAGGAGGAGGAGTAGATGGTCCTATGGGAATAGATTAA

Protein sequence

>Msa1429020

MMLAMEEVLCELSDHEKKNEQGLPPGFRFHPTDEELITFYLASKVFKNTYFNNVKFAEVDLNRCEPWELPEMAKMGEREWYLFSLRDRKYPTGLRTNRATSAGYWKATGKDKEVYSCSSSRSLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLHSHHFSPSHTTCKEEWVICRIFHKSGEKRNSLLQIQGHLGGNPNLTPQKSCLPPTPPLLATNSFTQLDQNDQLLSHSHNIFPLPSFQPSFSMINHTTRNNNNNPSSELLFKSQQYYTMKQQTIPKTEATFYDQHQSQSQSQSIDDALNLRWIIDNNNNTNNYENSLFPVEMEMEMDGAAHDLIAFSGAATNAEFRDMTIINSRGGGVDGPMGID*