AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1429020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429020 MtrunA17_Chr3g0144271 93.642 173 10 1 1 173 1 172 1.10e-114 340
Msa1429020 MtrunA17_Chr3g0144271 87.745 204 11 6 166 366 226 418 1.31e-106 319
Msa1429020 MtrunA17_Chr2g0316971 72.152 158 37 4 23 177 23 176 2.51e-75 238
Msa1429020 MtrunA17_Chr1g0147421 62.712 177 58 3 6 178 6 178 1.16e-73 233
Msa1429020 MtrunA17_Chr3g0139331 64.198 162 53 3 20 181 8 164 6.18e-71 225
Msa1429020 MtrunA17_Chr6g0453451 50.000 256 108 9 1 255 1 237 1.30e-70 223
Msa1429020 MtrunA17_Chr6g0484441 66.038 159 45 4 20 177 2 152 2.67e-70 223
Msa1429020 MtrunA17_Chr7g0253011 51.101 227 95 7 23 238 17 238 5.33e-69 221
Msa1429020 MtrunA17_Chr4g0060931 53.363 223 81 8 7 221 2 209 1.01e-68 220
Msa1429020 MtrunA17_Chr3g0091921 63.372 172 51 5 8 177 6 167 1.52e-68 218
Msa1429020 MtrunA17_Chr7g0217721 55.500 200 66 6 12 196 7 198 7.83e-66 212
Msa1429020 MtrunA17_Chr6g0461661 62.112 161 48 4 23 177 18 171 1.09e-65 213
Msa1429020 MtrunA17_Chr2g0312321 56.250 160 64 2 20 179 8 161 6.48e-63 203
Msa1429020 MtrunA17_Chr1g0183741 53.614 166 70 3 23 188 10 168 4.61e-60 195
Msa1429020 MtrunA17_Chr7g0217711 59.394 165 57 4 12 170 7 167 2.58e-59 189
Msa1429020 MtrunA17_Chr7g0261411 39.550 311 155 11 23 331 10 289 8.95e-59 192
Msa1429020 MtrunA17_Chr2g0309891 56.688 157 62 3 23 177 6 158 3.55e-56 187
Msa1429020 MtrunA17_Chr4g0018391 54.140 157 62 4 23 176 7 156 2.62e-55 184
Msa1429020 MtrunA17_Chr7g0263931 52.023 173 78 3 14 183 2 172 5.50e-55 183
Msa1429020 MtrunA17_Chr5g0405211 55.000 160 62 4 20 176 5 157 6.60e-55 184
Msa1429020 MtrunA17_Chr2g0309331 51.744 172 74 4 20 188 7 172 9.62e-55 183
Msa1429020 MtrunA17_Chr4g0056541 55.414 157 60 4 23 176 7 156 1.69e-54 183
Msa1429020 MtrunA17_Chr8g0372121 54.375 160 63 4 20 176 3 155 4.49e-54 180
Msa1429020 MtrunA17_Chr4g0017921 49.735 189 79 5 22 207 7 182 4.80e-54 181
Msa1429020 MtrunA17_Chr6g0481091 44.700 217 98 7 22 226 5 211 7.94e-54 177
Msa1429020 MtrunA17_Chr5g0398971 53.797 158 63 5 23 176 7 158 4.47e-53 179
Msa1429020 MtrunA17_Chr2g0318101 47.568 185 84 4 11 184 2 184 5.52e-52 176
Msa1429020 MtrunA17_Chr1g0200561 51.515 165 60 5 20 176 16 168 9.07e-52 176
Msa1429020 MtrunA17_Chr8g0346001 48.087 183 68 6 23 183 15 192 3.35e-51 176
Msa1429020 MtrunA17_Chr7g0252971 49.701 167 74 5 20 177 5 170 3.71e-51 174
Msa1429020 MtrunA17_Chr8g0384721 52.500 160 68 3 23 179 7 161 4.22e-51 172
Msa1429020 MtrunA17_Chr5g0417791 50.955 157 70 3 23 176 3 155 4.52e-51 171
Msa1429020 MtrunA17_Chr3g0124761 50.617 162 73 3 19 178 3 159 1.25e-50 171
Msa1429020 MtrunA17_Chr4g0047841 47.458 177 69 4 23 177 15 189 1.01e-49 170
Msa1429020 MtrunA17_Chr7g0214071 50.000 176 78 6 16 189 8 175 1.42e-49 167
Msa1429020 MtrunA17_Chr4g0042561 52.229 157 68 4 23 176 9 161 1.99e-49 167
Msa1429020 MtrunA17_Chr3g0109821 52.866 157 68 3 23 177 6 158 2.50e-49 176
Msa1429020 MtrunA17_Chr3g0130731 50.610 164 74 3 18 179 2 160 2.54e-49 167
Msa1429020 MtrunA17_Chr2g0326361 48.810 168 81 3 18 182 9 174 4.34e-49 167
Msa1429020 MtrunA17_Chr2g0318081 47.647 170 84 3 8 177 1 165 1.29e-48 167
Msa1429020 MtrunA17_Chr8g0361731 40.161 249 112 7 17 252 8 232 3.32e-48 167
Msa1429020 MtrunA17_Chr5g0433781 42.017 238 113 9 23 254 6 224 8.17e-48 171
Msa1429020 MtrunA17_Chr8g0359921 48.795 166 74 4 23 184 14 172 1.26e-47 164
Msa1429020 MtrunA17_Chr5g0417001 50.000 174 77 5 11 177 3 173 1.70e-47 165
Msa1429020 MtrunA17_Chr6g0453131 46.629 178 80 4 23 192 15 185 2.31e-47 165
Msa1429020 MtrunA17_Chr5g0400461 50.898 167 68 7 23 182 6 165 6.63e-45 157
Msa1429020 MtrunA17_Chr4g0076731 50.000 154 71 4 25 178 56 203 1.82e-44 158
Msa1429020 MtrunA17_Chr4g0038751 43.258 178 83 5 2 177 1 162 1.88e-44 155
Msa1429020 MtrunA17_Chr5g0442771 44.379 169 85 3 16 176 11 178 2.44e-44 155
Msa1429020 MtrunA17_Chr3g0092671 48.734 158 70 5 25 178 7 157 4.54e-44 159
Msa1429020 MtrunA17_Chr4g0054791 47.647 170 84 4 23 189 6 173 7.88e-44 154
Msa1429020 MtrunA17_Chr8g0364791 38.914 221 116 7 23 232 6 218 3.27e-43 155
Msa1429020 MtrunA17_Chr1g0197361 46.154 156 77 3 25 178 10 160 5.76e-43 157
Msa1429020 MtrunA17_Chr5g0428991 49.057 159 74 4 23 179 25 178 1.13e-42 157
Msa1429020 MtrunA17_Chr3g0128151 41.463 205 109 6 23 221 22 221 1.43e-42 156
Msa1429020 MtrunA17_Chr1g0201021 50.318 157 69 5 25 178 21 171 3.41e-42 155
Msa1429020 MtrunA17_Chr3g0128111 40.887 203 110 5 26 226 45 239 4.51e-42 147
Msa1429020 MtrunA17_Chr3g0130101 45.513 156 78 4 25 178 9 159 7.15e-42 150
Msa1429020 MtrunA17_Chr3g0113001 63.964 111 33 3 69 176 10 116 1.61e-41 147
Msa1429020 MtrunA17_Chr8g0384201 44.304 158 81 4 23 178 6 158 3.30e-41 150
Msa1429020 MtrunA17_Chr2g0311651 41.477 176 90 4 25 188 24 198 2.83e-40 144
Msa1429020 MtrunA17_Chr1g0197351 48.447 161 72 4 23 176 42 198 1.92e-39 146
Msa1429020 MtrunA17_Chr2g0311661 40.341 176 92 4 25 188 23 197 3.19e-39 141
Msa1429020 MtrunA17_Chr4g0026141 42.857 168 88 3 20 181 2 167 4.37e-37 134
Msa1429020 MtrunA17_Chr8g0385991 41.566 166 86 5 23 184 14 172 9.60e-36 130
Msa1429020 MtrunA17_Chr2g0321631 43.293 164 80 5 24 178 5 164 1.31e-34 127
Msa1429020 MtrunA17_Chr8g0345671 36.681 229 129 7 23 243 11 231 1.91e-34 130
Msa1429020 MtrunA17_Chr3g0131911 43.902 164 75 5 23 176 14 170 5.65e-34 125
Msa1429020 MtrunA17_Chr8g0345691 40.341 176 95 5 23 196 12 179 1.57e-32 126
Msa1429020 MtrunA17_Chr3g0113031 56.311 103 37 3 85 182 1 100 6.11e-32 121
Msa1429020 MtrunA17_Chr8g0345711 43.846 130 69 3 23 150 12 139 1.40e-28 109
Msa1429020 MtrunA17_Chr7g0266701 39.024 164 89 6 23 177 4 165 2.76e-28 111
Msa1429020 MtrunA17_Chr2g0321741 43.609 133 57 5 56 187 24 139 3.99e-28 112
Msa1429020 MtrunA17_Chr8g0345701 39.583 144 67 5 23 150 7 146 9.37e-26 102
Msa1429020 MtrunA17_Chr4g0050701 36.145 166 91 4 23 183 11 166 1.04e-25 102
Msa1429020 MtrunA17_Chr8g0345731 42.424 132 71 4 23 150 24 154 1.86e-25 101
Msa1429020 MtrunA17_Chr7g0243371 50.602 83 40 1 77 159 17 98 3.05e-23 93.6
Msa1429020 MtrunA17_Chr8g0345721 30.939 181 87 4 6 150 13 191 4.53e-23 95.9
Msa1429020 MtrunA17_Chr8g0384351 39.752 161 70 8 23 183 10 143 9.53e-21 88.6
Msa1429020 MtrunA17_Chr8g0345741 34.932 146 85 6 34 177 2 139 1.58e-20 87.0
Msa1429020 MtrunA17_Chr3g0130321 31.677 161 93 3 23 174 7 159 9.99e-18 80.9
Msa1429020 MtrunA17_Chr7g0251661 33.083 133 81 5 20 150 7 133 3.22e-16 75.5
Msa1429020 MtrunA17_Chr7g0251651 31.333 150 92 6 3 150 1 141 1.75e-14 71.2
Msa1429020 MtrunA17_Chr3g0113011 55.000 60 25 2 12 70 7 65 1.79e-14 67.8
Msa1429020 MtrunA17_Chr7g0251671 31.387 137 82 5 20 152 7 135 1.43e-13 68.2
Msa1429020 MtrunA17_Chr3g0113041 50.000 60 28 2 12 70 7 65 7.71e-12 60.5
Msa1429020 MtrunA17_Chr4g0040541 32.667 150 79 6 22 154 47 191 5.37e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429020 AT1G76420.1 74.317 183 40 5 1 182 1 177 8.44e-94 283
Msa1429020 AT5G61430.1 57.576 231 74 10 7 222 2 223 1.65e-75 237
Msa1429020 AT2G24430.2 65.089 169 53 4 11 177 2 166 4.18e-75 235
Msa1429020 AT2G24430.1 65.089 169 53 4 11 177 2 166 4.18e-75 235
Msa1429020 AT3G18400.1 68.354 158 44 3 20 177 2 153 7.97e-73 229
Msa1429020 AT3G15170.1 54.762 210 86 5 18 222 15 220 2.34e-72 228
Msa1429020 AT5G53950.1 67.901 162 45 4 19 177 13 170 2.15e-71 228
Msa1429020 AT5G39610.1 67.722 158 46 3 23 179 20 173 2.31e-71 224
Msa1429020 AT5G07680.1 59.799 199 65 8 15 205 8 199 2.87e-71 226
Msa1429020 AT5G07680.2 61.053 190 60 7 23 205 3 185 1.44e-70 223
Msa1429020 AT5G18270.1 49.035 259 95 10 1 249 1 232 4.63e-70 223
Msa1429020 AT5G18270.2 49.035 259 95 10 1 249 1 232 7.28e-70 222
Msa1429020 AT3G29035.1 63.158 171 55 4 6 175 10 173 3.04e-68 218
Msa1429020 AT3G04060.1 64.331 157 48 4 23 176 20 171 1.42e-67 216
Msa1429020 AT1G56010.2 45.528 246 115 8 20 260 16 247 1.80e-64 208
Msa1429020 AT3G12977.1 54.140 157 68 2 20 176 15 167 1.36e-60 196
Msa1429020 AT5G62380.2 55.063 158 59 5 23 176 7 156 6.05e-56 187
Msa1429020 AT5G62380.1 55.063 158 59 5 23 176 7 156 6.05e-56 187
Msa1429020 AT4G28530.1 51.479 169 61 3 23 176 10 172 7.47e-56 186
Msa1429020 AT1G33280.1 44.196 224 104 8 22 240 7 214 1.50e-55 184
Msa1429020 AT4G36160.1 55.689 167 61 6 23 183 10 169 3.75e-55 186
Msa1429020 AT4G36160.3 55.689 167 61 6 23 183 10 169 3.75e-55 186
Msa1429020 AT4G36160.2 55.689 167 61 6 23 183 14 173 3.80e-55 186
Msa1429020 AT2G18060.3 53.012 166 66 5 23 183 9 167 1.09e-54 184
Msa1429020 AT2G18060.1 53.012 166 66 5 23 183 9 167 1.09e-54 184
Msa1429020 AT1G12260.2 55.063 158 59 5 23 176 7 156 1.77e-54 182
Msa1429020 AT1G12260.1 55.063 158 59 5 23 176 7 156 3.01e-54 184
Msa1429020 AT4G10350.1 55.696 158 62 4 22 176 8 160 3.17e-54 182
Msa1429020 AT2G46770.1 51.479 169 63 4 23 176 16 180 1.05e-53 181
Msa1429020 AT1G69490.1 50.296 169 77 3 16 181 2 166 1.58e-53 178
Msa1429020 AT1G61110.1 48.864 176 76 4 23 187 16 188 1.67e-53 179
Msa1429020 AT1G62700.1 54.777 157 61 4 23 176 7 156 1.81e-53 181
Msa1429020 AT1G62700.2 54.777 157 61 4 23 176 7 156 1.81e-53 181
Msa1429020 AT1G71930.2 51.515 165 60 5 20 176 6 158 9.05e-53 177
Msa1429020 AT1G71930.1 51.515 165 60 5 20 176 6 158 9.05e-53 177
Msa1429020 AT5G66300.1 54.717 159 61 5 22 176 11 162 1.06e-52 176
Msa1429020 AT3G17730.1 53.459 159 67 4 22 178 5 158 1.30e-52 175
Msa1429020 AT4G27410.2 51.190 168 74 5 23 188 14 175 1.88e-52 176
Msa1429020 AT5G08790.1 52.727 165 69 3 18 178 2 161 2.88e-52 175
Msa1429020 AT5G63790.1 53.333 165 68 3 18 178 45 204 6.84e-52 175
Msa1429020 AT5G63790.2 53.333 165 68 3 18 178 55 214 7.93e-52 175
Msa1429020 AT1G79580.3 53.374 163 64 5 23 181 17 171 1.38e-51 176
Msa1429020 AT1G79580.5 53.374 163 64 5 23 181 17 171 1.38e-51 176
Msa1429020 AT1G79580.4 53.374 163 64 5 23 181 17 171 1.38e-51 176
Msa1429020 AT1G79580.2 53.374 163 64 5 23 181 17 171 1.38e-51 176
Msa1429020 AT1G79580.1 53.374 163 64 5 23 181 17 171 1.38e-51 176
Msa1429020 AT3G61910.1 46.893 177 75 5 23 184 11 183 3.27e-51 174
Msa1429020 AT5G39820.1 45.455 198 81 7 1 177 1 192 3.68e-51 174
Msa1429020 AT1G01720.1 44.076 211 101 7 23 225 7 208 6.04e-51 172
Msa1429020 AT5G61430.2 58.434 166 48 8 72 222 1 160 6.75e-51 171
Msa1429020 AT3G03200.1 54.777 157 65 3 22 176 5 157 7.94e-51 177
Msa1429020 AT1G77450.1 50.000 168 75 4 23 186 10 172 2.11e-50 169
Msa1429020 AT1G32770.1 50.000 166 67 4 23 176 16 177 3.49e-50 172
Msa1429020 AT5G17260.1 53.846 156 66 3 23 176 6 157 4.02e-50 175
Msa1429020 AT3G04070.2 49.412 170 75 4 17 177 4 171 5.28e-50 171
Msa1429020 AT5G46590.1 50.602 166 77 3 23 186 6 168 2.55e-49 168
Msa1429020 AT5G04410.1 53.165 158 67 4 23 178 9 161 4.42e-49 174
Msa1429020 AT1G65910.1 52.532 158 68 4 23 178 6 158 6.22e-49 174
Msa1429020 AT3G10480.1 44.712 208 100 6 23 221 27 228 3.09e-48 169
Msa1429020 AT4G27410.3 46.486 185 74 6 23 188 14 192 5.00e-48 165
Msa1429020 AT1G54330.1 56.410 156 58 6 23 176 6 153 5.63e-48 164
Msa1429020 AT2G43000.1 46.512 172 87 3 14 185 10 176 5.72e-48 164
Msa1429020 AT3G15500.1 52.229 157 64 4 23 176 14 162 5.76e-48 165
Msa1429020 AT3G10500.1 51.266 158 70 4 23 178 9 161 8.46e-48 170
Msa1429020 AT1G52890.1 52.229 157 64 4 23 176 14 162 1.54e-47 164
Msa1429020 AT3G04070.1 45.161 186 75 4 17 177 4 187 1.99e-47 165
Msa1429020 AT3G10490.1 50.000 158 71 4 23 177 27 179 2.76e-47 160
Msa1429020 AT3G10480.2 44.712 208 99 7 23 221 27 227 7.07e-47 166
Msa1429020 AT1G26870.1 47.674 172 80 3 14 177 7 176 9.67e-47 164
Msa1429020 AT2G02450.1 51.948 154 68 4 25 178 53 200 1.19e-46 163
Msa1429020 AT2G02450.2 51.948 154 68 4 25 178 53 200 1.45e-46 164
Msa1429020 AT3G15510.1 41.096 219 108 5 27 234 21 229 2.00e-46 162
Msa1429020 AT4G35580.1 47.904 167 78 5 21 184 7 167 3.59e-46 165
Msa1429020 AT4G35580.2 47.904 167 78 5 21 184 7 167 4.34e-46 165
Msa1429020 AT4G35580.3 47.904 167 78 5 21 184 7 167 4.41e-46 165
Msa1429020 AT3G10490.2 50.318 157 70 4 23 176 27 178 6.29e-46 163
Msa1429020 AT5G46590.2 53.741 147 63 3 23 167 6 149 1.25e-45 158
Msa1429020 AT1G33060.2 50.000 158 72 4 21 176 22 174 3.40e-45 164
Msa1429020 AT1G33060.1 50.000 158 72 4 21 176 22 174 3.76e-45 164
Msa1429020 AT2G17040.1 46.104 154 74 3 25 177 8 153 8.52e-45 155
Msa1429020 AT5G13180.1 52.597 154 66 4 23 176 14 160 2.05e-44 154
Msa1429020 AT4G17980.1 50.311 161 67 6 23 176 6 160 4.82e-44 153
Msa1429020 AT4G17980.2 50.311 161 67 6 23 176 6 160 6.18e-44 154
Msa1429020 AT3G10480.3 35.915 284 128 8 23 262 27 300 5.44e-43 157
Msa1429020 AT1G56010.1 44.845 194 88 8 72 260 1 180 1.08e-42 149
Msa1429020 AT5G24590.2 45.783 166 82 5 14 176 4 164 2.26e-42 154
Msa1429020 AT3G49530.2 42.781 187 95 6 23 202 13 194 2.45e-42 152
Msa1429020 AT3G12910.1 43.575 179 87 5 16 181 13 190 3.44e-42 149
Msa1429020 AT3G49530.1 47.771 157 74 5 23 176 13 164 8.51e-42 152
Msa1429020 AT1G52880.1 49.057 159 72 4 27 177 21 178 1.89e-41 148
Msa1429020 AT1G34190.1 48.428 159 69 5 25 178 18 168 2.19e-41 152
Msa1429020 AT2G33480.2 48.447 161 73 4 23 183 15 165 2.32e-41 146
Msa1429020 AT1G34180.3 46.795 156 76 4 25 178 18 168 4.55e-41 150
Msa1429020 AT2G33480.1 47.826 161 76 4 23 183 15 167 5.44e-41 145
Msa1429020 AT1G34180.1 46.795 156 76 4 25 178 18 168 2.27e-40 150
Msa1429020 AT2G27300.1 43.243 185 83 8 22 197 13 184 2.84e-40 145
Msa1429020 AT1G34180.4 43.452 168 76 4 25 178 18 180 2.62e-39 145
Msa1429020 AT1G32510.1 47.205 161 78 3 23 177 6 165 2.75e-39 141
Msa1429020 AT5G09330.5 44.304 158 81 5 23 178 6 158 3.75e-39 145
Msa1429020 AT5G09330.2 44.304 158 81 5 23 178 6 158 3.75e-39 145
Msa1429020 AT5G09330.4 44.304 158 81 5 23 178 6 158 3.75e-39 145
Msa1429020 AT5G09330.3 44.304 158 81 5 23 178 6 158 3.75e-39 145
Msa1429020 AT5G09330.1 44.304 158 81 5 23 178 6 158 3.75e-39 145
Msa1429020 AT3G12977.2 55.556 108 45 1 69 176 10 114 4.39e-39 139
Msa1429020 AT1G32870.2 49.375 160 72 6 22 178 9 162 1.19e-38 145
Msa1429020 AT1G34180.2 43.452 168 76 4 25 178 18 180 1.30e-38 145
Msa1429020 AT1G32870.1 49.375 160 72 6 22 178 9 162 1.41e-38 144
Msa1429020 AT1G32870.3 49.375 160 72 6 22 178 45 198 2.06e-38 144
Msa1429020 AT5G64060.1 41.772 158 85 4 23 178 6 158 2.55e-37 138
Msa1429020 AT4G28530.2 48.837 129 50 2 23 136 10 137 3.53e-34 129
Msa1429020 AT4G10350.2 55.856 111 42 3 69 176 7 113 4.52e-34 127
Msa1429020 AT5G04395.1 42.466 146 70 2 20 152 25 169 4.20e-33 122
Msa1429020 AT5G22290.1 42.254 142 77 3 25 165 23 160 8.67e-33 125
Msa1429020 AT3G44290.2 40.854 164 81 6 25 186 16 165 1.02e-31 119
Msa1429020 AT3G44290.1 40.854 164 81 6 25 186 16 165 2.49e-31 121
Msa1429020 AT4G01550.1 35.025 197 101 6 26 214 7 184 1.32e-30 121
Msa1429020 AT3G44350.2 38.788 165 91 3 23 181 5 165 7.03e-29 112
Msa1429020 AT4G01520.1 34.161 161 89 4 24 177 5 155 3.19e-28 112
Msa1429020 AT2G33480.3 48.598 107 51 2 77 183 8 110 8.76e-27 106
Msa1429020 AT4G01540.2 33.962 159 88 4 26 177 7 155 9.51e-27 110
Msa1429020 AT4G01540.4 33.962 159 88 4 26 177 7 155 1.16e-26 109
Msa1429020 AT4G01540.1 33.962 159 88 4 26 177 7 155 1.42e-26 110
Msa1429020 AT4G01540.3 33.962 159 88 4 26 177 7 155 1.45e-26 110
Msa1429020 AT5G22380.1 37.037 162 94 4 26 181 8 167 4.84e-26 104
Msa1429020 AT3G44350.1 40.741 135 70 3 23 151 5 135 2.21e-24 98.2
Msa1429020 AT1G02230.1 39.474 152 80 6 24 168 4 150 5.07e-24 102
Msa1429020 AT1G02250.1 35.404 161 92 6 24 181 4 155 1.36e-23 100
Msa1429020 AT3G04420.2 36.538 156 87 5 24 176 4 150 1.45e-23 99.4
Msa1429020 AT3G04420.1 36.538 156 87 5 24 176 4 150 2.71e-23 99.8
Msa1429020 AT2G18060.2 53.571 84 31 3 102 183 2 79 9.68e-23 96.7
Msa1429020 AT2G43000.2 45.545 101 52 1 85 185 1 98 1.26e-22 94.7
Msa1429020 AT3G10490.4 54.321 81 34 1 97 177 2 79 1.96e-22 97.4
Msa1429020 AT3G10490.3 54.321 81 34 1 97 177 2 79 1.96e-22 97.4
Msa1429020 AT5G64530.1 35.928 167 80 5 23 176 3 155 4.26e-22 92.8
Msa1429020 AT1G01010.1 31.120 241 125 11 26 255 6 216 5.96e-21 94.0
Msa1429020 AT5G64530.2 39.231 130 65 4 23 152 3 118 7.96e-21 88.6
Msa1429020 AT1G02220.1 35.616 146 84 5 24 165 4 143 5.26e-18 85.1
Msa1429020 AT5G50820.1 36.552 145 58 8 23 154 17 140 9.39e-15 72.4
Msa1429020 AT5G22290.2 47.619 63 30 1 103 165 2 61 2.92e-14 72.0
Msa1429020 AT5G14000.1 30.000 160 100 6 23 180 15 164 2.98e-14 71.2
Msa1429020 AT3G55210.1 29.518 166 94 6 23 174 11 167 4.93e-14 72.0
Msa1429020 AT3G56530.1 29.032 155 102 4 22 174 51 199 8.07e-14 72.0
Msa1429020 AT3G04430.1 31.690 142 79 5 29 159 6 140 2.83e-12 65.5

Find 101 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTAAATGTCCTTGAATT+TGG 0.113855 tig0026425:-46646 None:intergenic
TGGATTATTATTGTTGTTTC+TGG 0.174409 tig0026425:-46837 None:intergenic
CTGCTACAAATGCTGAATTT+AGG 0.233006 tig0026425:+47110 Msa1429020:CDS
TATTGTCAATAATCCATCTT+AGG 0.255982 tig0026425:-46991 None:intergenic
GTGAGAGTAATTGGTCATTT+TGG 0.260408 tig0026425:-46751 None:intergenic
CTCCATCTCCACAGGGAATA+AGG 0.266636 tig0026425:-47041 None:intergenic
AAGGTCTACCACCTGGTTTC+AGG 0.277471 tig0026425:+44732 Msa1429020:CDS
TGGAATGGTCTGCTGCTTCA+TGG 0.293699 tig0026425:-46897 None:intergenic
TGCAGGATATTTCATAAATC+AGG 0.304192 tig0026425:+46602 Msa1429020:CDS
CAGTAGTAGTAGATCCCTTT+TGG 0.304650 tig0026425:+45380 Msa1429020:CDS
TCAAATAAAGCTTAGCTAAC+TGG 0.311124 tig0026425:-47345 None:intergenic
TATGAGAATGTGAGAGTAAT+TGG 0.314718 tig0026425:-46760 None:intergenic
CTCCAAATTCAAGGACATTT+AGG 0.315142 tig0026425:+46644 Msa1429020:CDS
AACCTTAGAAGCCAAATAAA+AGG 0.317144 tig0026425:-44783 None:intergenic
GAGCAACAAGTGCTGGTTAC+TGG 0.324307 tig0026425:+45322 Msa1429020:CDS
TGCTACAAATGCTGAATTTA+GGG 0.334843 tig0026425:+47111 Msa1429020:CDS
GAGTGTAGAGTCTACCTTGC+AGG 0.354307 tig0026425:-45517 None:intergenic
ATTAAATTTGACAGGAAGAG+TGG 0.367388 tig0026425:+46573 Msa1429020:intron
TACAAAATTATTTATGCTAC+AGG 0.384376 tig0026425:-47304 None:intergenic
GCTGGTTACTGGAAAGCAAC+TGG 0.394693 tig0026425:+45333 Msa1429020:CDS
TGTGAGCCATGGGAACTTCC+AGG 0.411730 tig0026425:+44860 Msa1429020:CDS
CTCGTGGTGAAAAGACCAAA+TGG 0.412457 tig0026425:+45442 Msa1429020:CDS
ATTGTGATTGTGATTGTGAT+TGG 0.418800 tig0026425:-46949 None:intergenic
CATGATCTGATTGCATTCTC+AGG 0.420966 tig0026425:+47085 Msa1429020:CDS
AGAGACAGAAAATACCCAAC+TGG 0.435287 tig0026425:+45285 Msa1429020:CDS
AGTAGAGGAGGAGGAGTAGA+TGG 0.441149 tig0026425:+47151 Msa1429020:CDS
CTCCTTATTCCCTGTGGAGA+TGG 0.444680 tig0026425:+47039 Msa1429020:CDS
CTGTTTGTTCTAAGCCCAGT+TGG 0.444880 tig0026425:-45300 None:intergenic
ATGATGCTCTTAACCTAAGA+TGG 0.450839 tig0026425:+46978 Msa1429020:CDS
GTGCGCAGAAATGGCAAAGA+TGG 0.456021 tig0026425:+45233 Msa1429020:intron
TTGAAGAGTAGTTCTGAAGA+TGG 0.457504 tig0026425:-46857 None:intergenic
GTACTCATGCATGACCCATT+TGG 0.462977 tig0026425:-45457 None:intergenic
AGGAGGAGTAGATGGTCCTA+TGG 0.463355 tig0026425:+47159 Msa1429020:CDS
TGATCATTGAAAAGGAAGGT+TGG 0.466892 tig0026425:-46805 None:intergenic
ACGGATCGGTATGTAATTGT+TGG 0.467014 tig0026425:+47436 Msa1429020:three_prime_UTR
AGGAAGAGTGGGTGATATGC+AGG 0.467215 tig0026425:+46585 Msa1429020:intron
TGTTTGTTCTAAGCCCAGTT+GGG 0.468704 tig0026425:-45299 None:intergenic
GAAAAGGAAGGTTGGAATGA+AGG 0.469309 tig0026425:-46797 None:intergenic
ATCTCCATCTCCATCTCCAC+AGG 0.470024 tig0026425:-47049 None:intergenic
GGGTCTTCTTCATCCCCAAA+AGG 0.475040 tig0026425:-45395 None:intergenic
CCCTTCCTTTGTAGAAAACA+AGG 0.478110 tig0026425:-45416 None:intergenic
GTTGCAAGTAAAGGTGGTGT+AGG 0.481910 tig0026425:-46707 None:intergenic
AATTCACTACTCCAAATTCA+AGG 0.492982 tig0026425:+46635 Msa1429020:CDS
AAAAGTGATGAGAGTGTAAA+CGG 0.494516 tig0026425:-45479 None:intergenic
AAGGTTGGAATGAAGGCAAT+GGG 0.499808 tig0026425:-46790 None:intergenic
TAATGAGTTCTTCATCAGTT+GGG 0.509577 tig0026425:-44760 None:intergenic
GTAATGAGTTCTTCATCAGT+TGG 0.518253 tig0026425:-44761 None:intergenic
GCAGGATATTTCATAAATCA+GGG 0.520833 tig0026425:+46603 Msa1429020:CDS
AATGAATTAGTTGCAAGTAA+AGG 0.523374 tig0026425:-46716 None:intergenic
ATTATTAACAGTAGAGGAGG+AGG 0.529799 tig0026425:+47142 Msa1429020:CDS
ACAAACAGAGCAACAAGTGC+TGG 0.530692 tig0026425:+45315 Msa1429020:CDS
ATTATTATTGTTGTTTCTGG+TGG 0.531495 tig0026425:-46834 None:intergenic
AGACTTTAATCTATTCCCAT+AGG 0.531823 tig0026425:-47175 None:intergenic
GCAAGTAAAGGTGGTGTAGG+AGG 0.532204 tig0026425:-46704 None:intergenic
GGTCTTCTTCATCCCCAAAA+GGG 0.552052 tig0026425:-45394 None:intergenic
TTAAATTTGACAGGAAGAGT+GGG 0.555158 tig0026425:+46574 Msa1429020:intron
CCCATGGCTCACATCTATTG+AGG 0.558723 tig0026425:-44850 None:intergenic
ACCTCAATAGATGTGAGCCA+TGG 0.559776 tig0026425:+44849 Msa1429020:CDS
AGTCTAAACTACCTAGCAGT+AGG 0.561121 tig0026425:+47193 Msa1429020:three_prime_UTR
TCGTGGTGAAAAGACCAAAT+GGG 0.562515 tig0026425:+45443 Msa1429020:CDS
AAGCTTAGCTAACTGGACAT+AGG 0.562681 tig0026425:-47338 None:intergenic
ATTAAGATGTGTGGATGGAA+CGG 0.563367 tig0026425:+47417 Msa1429020:three_prime_UTR
TCCCAGTATGATGTTAGCAA+TGG 0.563508 tig0026425:+44664 None:intergenic
GGTGTGATTGATCATTGAAA+AGG 0.567351 tig0026425:-46813 None:intergenic
CTGGTTACTGGAAAGCAACT+GGG 0.568979 tig0026425:+45334 Msa1429020:CDS
TGAAGCTACTGCCTACTGCT+AGG 0.573069 tig0026425:-47204 None:intergenic
GAAGGTTGGAATGAAGGCAA+TGG 0.573071 tig0026425:-46791 None:intergenic
TTATTTGAATGATCTAGTAG+TGG 0.575129 tig0026425:+47360 Msa1429020:three_prime_UTR
TGCGCAGAAATGGCAAAGAT+GGG 0.576663 tig0026425:+45234 Msa1429020:intron
GAATTAGTTGCAAGTAAAGG+TGG 0.579741 tig0026425:-46713 None:intergenic
CAAAGATGGGAGAAAGAGAG+TGG 0.580922 tig0026425:+45247 Msa1429020:CDS
GGAGGAGTAGATGGTCCTAT+GGG 0.586562 tig0026425:+47160 Msa1429020:CDS
TCCTTCTCATACCACCTGCA+AGG 0.587913 tig0026425:+45503 Msa1429020:CDS
ACCTTGCAGGTGGTATGAGA+AGG 0.591967 tig0026425:-45504 None:intergenic
AAAATACCTGGAAGTTCCCA+TGG 0.594367 tig0026425:-44866 None:intergenic
TGTGGAGATGGAGATGGAGA+TGG 0.601306 tig0026425:+47051 Msa1429020:CDS
ACAATTATTAACAGTAGAGG+AGG 0.602665 tig0026425:+47139 Msa1429020:CDS
CCTCAATAGATGTGAGCCAT+GGG 0.602795 tig0026425:+44850 Msa1429020:CDS
ATTCCCTGTGGAGATGGAGA+TGG 0.605578 tig0026425:+47045 Msa1429020:CDS
TAGTACGTAGTAGTTACCGC+AGG 0.610339 tig0026425:-47260 None:intergenic
TGGCTACAAATTAAGATGTG+TGG 0.610705 tig0026425:+47408 Msa1429020:three_prime_UTR
CAAATTCAAGGACATTTAGG+TGG 0.614283 tig0026425:+46647 Msa1429020:CDS
ATGACAATTATTAACAGTAG+AGG 0.624652 tig0026425:+47136 Msa1429020:CDS
TGAAAACTCCTTATTCCCTG+TGG 0.636642 tig0026425:+47033 Msa1429020:CDS
AGCTAACTGGACATAGGCAT+AGG 0.637027 tig0026425:-47332 None:intergenic
GAAAGCAACTGGGAAGGACA+AGG 0.641859 tig0026425:+45344 Msa1429020:CDS
GTTGGGTGAAACCTGAAACC+AGG 0.645484 tig0026425:-44743 None:intergenic
AACGAACAAGGTCTACCACC+TGG 0.649637 tig0026425:+44725 Msa1429020:CDS
TACAAATTAAGATGTGTGGA+TGG 0.652047 tig0026425:+47412 Msa1429020:three_prime_UTR
GAGACAGAAAATACCCAACT+GGG 0.657078 tig0026425:+45286 Msa1429020:CDS
CAGGATATTTCATAAATCAG+GGG 0.657923 tig0026425:+46604 Msa1429020:CDS
CCTTCCTTTGTAGAAAACAA+GGG 0.658759 tig0026425:-45415 None:intergenic
TGATTGATCATTGAAAAGGA+AGG 0.667339 tig0026425:-46809 None:intergenic
TCTCCATCTCCATCTCCACA+GGG 0.678879 tig0026425:-47048 None:intergenic
TTACTGGAAAGCAACTGGGA+AGG 0.681913 tig0026425:+45338 Msa1429020:CDS
TGTAGAGTCTACCTTGCAGG+TGG 0.682650 tig0026425:-45514 None:intergenic
TACAAAGGAAGGGCCCCTCG+TGG 0.684378 tig0026425:+45426 Msa1429020:CDS
GAGATGGAGATGGAGATGGA+TGG 0.687367 tig0026425:+47055 Msa1429020:CDS
TACTTCAGTATACTGACCTG+CGG 0.709176 tig0026425:+47244 Msa1429020:three_prime_UTR
GATGTGTGGATGGAACGGAT+CGG 0.741357 tig0026425:+47422 Msa1429020:three_prime_UTR
GGGTGAAACCTGAAACCAGG+TGG 0.745805 tig0026425:-44740 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTATATTATTAAATA+GGG - tig0026425:46075-46094 None:intergenic 0.0%
!! TTAATATTATATTATTAAAT+AGG - tig0026425:46076-46095 None:intergenic 0.0%
!! GTATTAATTAAATAGAAAAA+TGG - tig0026425:45772-45791 None:intergenic 10.0%
!!! TTTATTAAATGTATCTTTTA+GGG + tig0026425:45856-45875 Msa1429020:intron 10.0%
!!! ATTTTATACATGAAATTATA+AGG + tig0026425:46532-46551 Msa1429020:intron 10.0%
!!! TAATTTCTAATAACTTTTTA+TGG + tig0026425:47388-47407 Msa1429020:three_prime_UTR 10.0%
!! ATAACAAAATATTAATACCT+AGG - tig0026425:45142-45161 None:intergenic 15.0%
!!! TTCAATTTTTGTCTATTTTT+GGG + tig0026425:45591-45610 Msa1429020:intron 15.0%
!!! GTTTATTAAATGTATCTTTT+AGG + tig0026425:45855-45874 Msa1429020:intron 15.0%
!! ACAAAGTATATTTATTCATT+GGG - tig0026425:46488-46507 None:intergenic 15.0%
!! AACAAAGTATATTTATTCAT+TGG - tig0026425:46489-46508 None:intergenic 15.0%
!! AATGAATAAATATACTTTGT+TGG + tig0026425:46488-46507 Msa1429020:intron 15.0%
!! TTTAGAAAATTAAATTTGAC+AGG + tig0026425:46565-46584 Msa1429020:intron 15.0%
!!! GTTACTAGATTTAAAATGAA+TGG + tig0026425:45102-45121 Msa1429020:intron 20.0%
!! AAAATAGACAAAAATTGAAG+AGG - tig0026425:45590-45609 None:intergenic 20.0%
!!! CTTCAATTTTTGTCTATTTT+TGG + tig0026425:45590-45609 Msa1429020:intron 20.0%
!! AGTAAAAAAAGAAATGACTT+GGG - tig0026425:45642-45661 None:intergenic 20.0%
!! TCATAAATTCATTATCCATT+TGG + tig0026425:45689-45708 Msa1429020:intron 20.0%
!! CATAAATTCATTATCCATTT+GGG + tig0026425:45690-45709 Msa1429020:intron 20.0%
!!! ACATTATGTATCATTTTTTG+TGG - tig0026425:46144-46163 None:intergenic 20.0%
!! TACAAAATTATTTATGCTAC+AGG - tig0026425:47307-47326 None:intergenic 20.0%
!! AGAACTCATTACCTTTTATT+TGG + tig0026425:44772-44791 Msa1429020:CDS 25.0%
!! TGTCTTATTATTAGGTTCAA+GGG - tig0026425:45062-45081 None:intergenic 25.0%
!! ATGTCTTATTATTAGGTTCA+AGG - tig0026425:45063-45082 None:intergenic 25.0%
!! GCACAATATGTCTTATTATT+AGG - tig0026425:45070-45089 None:intergenic 25.0%
! ATCTAGTAACTAGATATGAT+AGG - tig0026425:45092-45111 None:intergenic 25.0%
!! ACTAGATTTAAAATGAATGG+TGG + tig0026425:45105-45124 Msa1429020:intron 25.0%
! ATTTATGCAATAAAGAGAAG+TGG - tig0026425:45193-45212 None:intergenic 25.0%
! TAAATGTTGAATTGAACGAA+TGG + tig0026425:45208-45227 Msa1429020:intron 25.0%
! GTAAAAAAAGAAATGACTTG+GGG - tig0026425:45641-45660 None:intergenic 25.0%
! GAGTAAAAAAAGAAATGACT+TGG - tig0026425:45643-45662 None:intergenic 25.0%
!! TCTTTCCTTTCTTATTTGTT+GGG - tig0026425:45957-45976 None:intergenic 25.0%
!! TTCTTTCCTTTCTTATTTGT+TGG - tig0026425:45958-45977 None:intergenic 25.0%
!!! AAAGGAAAGAAAGTTTTATG+TGG + tig0026425:45967-45986 Msa1429020:intron 25.0%
!!! AAGGAAAGAAAGTTTTATGT+GGG + tig0026425:45968-45987 Msa1429020:intron 25.0%
! AAAGTAGAATAGAAAGTAAG+AGG - tig0026425:46307-46326 None:intergenic 25.0%
! AATGAATTAGTTGCAAGTAA+AGG - tig0026425:46719-46738 None:intergenic 25.0%
!!! ATTATTATTGTTGTTTCTGG+TGG - tig0026425:46837-46856 None:intergenic 25.0%
!!! TGGATTATTATTGTTGTTTC+TGG - tig0026425:46840-46859 None:intergenic 25.0%
! TATTGTCAATAATCCATCTT+AGG - tig0026425:46994-47013 None:intergenic 25.0%
! ATGACAATTATTAACAGTAG+AGG + tig0026425:47136-47155 Msa1429020:CDS 25.0%
! TTATTTGAATGATCTAGTAG+TGG + tig0026425:47360-47379 Msa1429020:three_prime_UTR 25.0%
CATGAAAAGAAAAACGAACA+AGG + tig0026425:44713-44732 Msa1429020:CDS 30.0%
TAATGAGTTCTTCATCAGTT+GGG - tig0026425:44763-44782 None:intergenic 30.0%
!! TACCTTTTATTTGGCTTCTA+AGG + tig0026425:44781-44800 Msa1429020:CDS 30.0%
AACCTTAGAAGCCAAATAAA+AGG - tig0026425:44786-44805 None:intergenic 30.0%
AAATAGTTCAAATTCCTCTC+AGG + tig0026425:44964-44983 Msa1429020:intron 30.0%
TATGTCCACTTATGTTAAGT+AGG + tig0026425:45159-45178 Msa1429020:intron 30.0%
ATGTCCACTTATGTTAAGTA+GGG + tig0026425:45160-45179 Msa1429020:intron 30.0%
! AAAAGTGATGAGAGTGTAAA+CGG - tig0026425:45482-45501 None:intergenic 30.0%
ACATCAAAAAACTACCCAAA+TGG - tig0026425:45707-45726 None:intergenic 30.0%
TTTAGTGGAAAGATTAGAAG+AGG + tig0026425:45888-45907 Msa1429020:intron 30.0%
TTAGTGGAAAGATTAGAAGA+GGG + tig0026425:45889-45908 Msa1429020:intron 30.0%
AAGATCTTCTTTCCATTGTT+TGG + tig0026425:45928-45947 Msa1429020:intron 30.0%
! CTTTCCTTTCTTATTTGTTG+GGG - tig0026425:45956-45975 None:intergenic 30.0%
! GGAAGAAAGAATTTTTGTGT+GGG - tig0026425:45995-46014 None:intergenic 30.0%
AGATGATTGTTATGGTTGTT+TGG - tig0026425:46338-46357 None:intergenic 30.0%
AGAAAGTGAGATGATTGTTA+TGG - tig0026425:46346-46365 None:intergenic 30.0%
!! TAAGAACTTAAGGCTTTGTT+TGG - tig0026425:46433-46452 None:intergenic 30.0%
AAAGCCTTAAGTTCTTATCT+TGG + tig0026425:46436-46455 Msa1429020:intron 30.0%
ATTAAATTTGACAGGAAGAG+TGG + tig0026425:46573-46592 Msa1429020:intron 30.0%
TTAAATTTGACAGGAAGAGT+GGG + tig0026425:46574-46593 Msa1429020:intron 30.0%
TGCAGGATATTTCATAAATC+AGG + tig0026425:46602-46621 Msa1429020:CDS 30.0%
GCAGGATATTTCATAAATCA+GGG + tig0026425:46603-46622 Msa1429020:CDS 30.0%
CAGGATATTTCATAAATCAG+GGG + tig0026425:46604-46623 Msa1429020:CDS 30.0%
AATTCACTACTCCAAATTCA+AGG + tig0026425:46635-46654 Msa1429020:CDS 30.0%
TATGAGAATGTGAGAGTAAT+TGG - tig0026425:46763-46782 None:intergenic 30.0%
TGATTGATCATTGAAAAGGA+AGG - tig0026425:46812-46831 None:intergenic 30.0%
! TAGAAAGTAGCTTCTGTTTT+TGG - tig0026425:46920-46939 None:intergenic 30.0%
ATTGTGATTGTGATTGTGAT+TGG - tig0026425:46952-46971 None:intergenic 30.0%
TGCTACAAATGCTGAATTTA+GGG + tig0026425:47111-47130 Msa1429020:CDS 30.0%
ACAATTATTAACAGTAGAGG+AGG + tig0026425:47139-47158 Msa1429020:CDS 30.0%
AGACTTTAATCTATTCCCAT+AGG - tig0026425:47178-47197 None:intergenic 30.0%
TCAAATAAAGCTTAGCTAAC+TGG - tig0026425:47348-47367 None:intergenic 30.0%
TACAAATTAAGATGTGTGGA+TGG + tig0026425:47412-47431 Msa1429020:three_prime_UTR 30.0%
GTAATGAGTTCTTCATCAGT+TGG - tig0026425:44764-44783 None:intergenic 35.0%
TCATGTGAGTAGAAAATACC+TGG - tig0026425:44881-44900 None:intergenic 35.0%
CTACAGTATCTTGTTCATGT+TGG - tig0026425:44904-44923 None:intergenic 35.0%
TGCATGTCTAGTAAATGTGA+TGG + tig0026425:44930-44949 Msa1429020:intron 35.0%
TAGATAGAATTACACCTGAG+AGG - tig0026425:44981-45000 None:intergenic 35.0%
CTTATTATTAGGTTCAAGGG+TGG - tig0026425:45059-45078 None:intergenic 35.0%
TGTCCACTTATGTTAAGTAG+GGG + tig0026425:45161-45180 Msa1429020:intron 35.0%
! AGTAGTAGTAGATCCCTTTT+GGG + tig0026425:45381-45400 Msa1429020:CDS 35.0%
!!! AAGACCCTTGTTTTCTACAA+AGG + tig0026425:45411-45430 Msa1429020:CDS 35.0%
CCTTCCTTTGTAGAAAACAA+GGG - tig0026425:45418-45437 None:intergenic 35.0%
!!! CCTTGTTTTCTACAAAGGAA+GGG + tig0026425:45416-45435 Msa1429020:CDS 35.0%
!!! TGTATCTTTTAGGGTGTGTT+TGG + tig0026425:45865-45884 Msa1429020:intron 35.0%
! GGGAAGAAAGAATTTTTGTG+TGG - tig0026425:45996-46015 None:intergenic 35.0%
TCTTTCTTCCCTAGATTGAA+CGG + tig0026425:46005-46024 Msa1429020:intron 35.0%
TCATGTTTCCGTTCAATCTA+GGG - tig0026425:46016-46035 None:intergenic 35.0%
GAGAAAGGAAAGATTGTGTA+AGG - tig0026425:46382-46401 None:intergenic 35.0%
GTGAAAGGAAAGAAAGAGAA+AGG - tig0026425:46397-46416 None:intergenic 35.0%
GGTTAGTGAATGAAAGTGAA+AGG - tig0026425:46412-46431 None:intergenic 35.0%
AGCACCAAGATAAGAACTTA+AGG - tig0026425:46443-46462 None:intergenic 35.0%
CTCCAAATTCAAGGACATTT+AGG + tig0026425:46644-46663 Msa1429020:CDS 35.0%
CACCTAAATGTCCTTGAATT+TGG - tig0026425:46649-46668 None:intergenic 35.0%
CAAATTCAAGGACATTTAGG+TGG + tig0026425:46647-46666 Msa1429020:CDS 35.0%
!!! CTTTTTTGGGGGGTTAAATT+AGG - tig0026425:46677-46696 None:intergenic 35.0%
!!! AGGAGGTAAACAGCTTTTTT+GGG - tig0026425:46690-46709 None:intergenic 35.0%
!!! TAGGAGGTAAACAGCTTTTT+TGG - tig0026425:46691-46710 None:intergenic 35.0%
GAATTAGTTGCAAGTAAAGG+TGG - tig0026425:46716-46735 None:intergenic 35.0%
! GTGAGAGTAATTGGTCATTT+TGG - tig0026425:46754-46773 None:intergenic 35.0%
TGATCATTGAAAAGGAAGGT+TGG - tig0026425:46808-46827 None:intergenic 35.0%
GGTGTGATTGATCATTGAAA+AGG - tig0026425:46816-46835 None:intergenic 35.0%
!! TTGAAGAGTAGTTCTGAAGA+TGG - tig0026425:46860-46879 None:intergenic 35.0%
!!! AGTAGCTTCTGTTTTTGGAA+TGG - tig0026425:46915-46934 None:intergenic 35.0%
ATGATGCTCTTAACCTAAGA+TGG + tig0026425:46978-46997 Msa1429020:CDS 35.0%
CTGCTACAAATGCTGAATTT+AGG + tig0026425:47110-47129 Msa1429020:CDS 35.0%
ATTATTAACAGTAGAGGAGG+AGG + tig0026425:47142-47161 Msa1429020:CDS 35.0%
TGGCTACAAATTAAGATGTG+TGG + tig0026425:47408-47427 Msa1429020:three_prime_UTR 35.0%
ATTAAGATGTGTGGATGGAA+CGG + tig0026425:47417-47436 Msa1429020:three_prime_UTR 35.0%
AAAATACCTGGAAGTTCCCA+TGG - tig0026425:44869-44888 None:intergenic 40.0%
GTCCACTTATGTTAAGTAGG+GGG + tig0026425:45162-45181 Msa1429020:intron 40.0%
AACCCCCTACTTAACATAAG+TGG - tig0026425:45167-45186 None:intergenic 40.0%
AGAGACAGAAAATACCCAAC+TGG + tig0026425:45285-45304 Msa1429020:CDS 40.0%
GAGACAGAAAATACCCAACT+GGG + tig0026425:45286-45305 Msa1429020:CDS 40.0%
! TGTTTGTTCTAAGCCCAGTT+GGG - tig0026425:45302-45321 None:intergenic 40.0%
! CAGTAGTAGTAGATCCCTTT+TGG + tig0026425:45380-45399 Msa1429020:CDS 40.0%
! GTAGTAGTAGATCCCTTTTG+GGG + tig0026425:45382-45401 Msa1429020:CDS 40.0%
!!! CCCTTGTTTTCTACAAAGGA+AGG + tig0026425:45415-45434 Msa1429020:CDS 40.0%
CCCTTCCTTTGTAGAAAACA+AGG - tig0026425:45419-45438 None:intergenic 40.0%
!! ATTTGGTCTTTTCACCACGA+GGG - tig0026425:45443-45462 None:intergenic 40.0%
TCGTGGTGAAAAGACCAAAT+GGG + tig0026425:45443-45462 Msa1429020:CDS 40.0%
!! GAGAGATAACTTGTTGAGCA+CGG - tig0026425:45566-45585 None:intergenic 40.0%
! AATGACTTGGGGTATCTGTA+TGG - tig0026425:45630-45649 None:intergenic 40.0%
! TTAGGGTGTGTTTGGTTTAG+TGG + tig0026425:45873-45892 Msa1429020:intron 40.0%
GAAGAGGGAAAGAAAGATTG+TGG + tig0026425:45904-45923 Msa1429020:intron 40.0%
TTTGTTGGGGTTCCAAACAA+TGG - tig0026425:45943-45962 None:intergenic 40.0%
GGAACCCCAACAAATAAGAA+AGG + tig0026425:45949-45968 Msa1429020:intron 40.0%
CTCATGTTTCCGTTCAATCT+AGG - tig0026425:46017-46036 None:intergenic 40.0%
CTAGATTGAACGGAAACATG+AGG + tig0026425:46015-46034 Msa1429020:intron 40.0%
!!! AGGTAAACAGCTTTTTTGGG+GGG - tig0026425:46687-46706 None:intergenic 40.0%
!!! GAGGTAAACAGCTTTTTTGG+GGG - tig0026425:46688-46707 None:intergenic 40.0%
!!! GGAGGTAAACAGCTTTTTTG+GGG - tig0026425:46689-46708 None:intergenic 40.0%
AAGGTTGGAATGAAGGCAAT+GGG - tig0026425:46793-46812 None:intergenic 40.0%
GAAAAGGAAGGTTGGAATGA+AGG - tig0026425:46800-46819 None:intergenic 40.0%
TGAAAACTCCTTATTCCCTG+TGG + tig0026425:47033-47052 Msa1429020:CDS 40.0%
CATGATCTGATTGCATTCTC+AGG + tig0026425:47085-47104 Msa1429020:CDS 40.0%
AGTCTAAACTACCTAGCAGT+AGG + tig0026425:47193-47212 Msa1429020:three_prime_UTR 40.0%
TACTTCAGTATACTGACCTG+CGG + tig0026425:47244-47263 Msa1429020:three_prime_UTR 40.0%
AAGCTTAGCTAACTGGACAT+AGG - tig0026425:47341-47360 None:intergenic 40.0%
ACCTCAATAGATGTGAGCCA+TGG + tig0026425:44849-44868 Msa1429020:CDS 45.0%
CCTCAATAGATGTGAGCCAT+GGG + tig0026425:44850-44869 Msa1429020:CDS 45.0%
TATTAGGTTCAAGGGTGGAG+AGG - tig0026425:45054-45073 None:intergenic 45.0%
TGCGCAGAAATGGCAAAGAT+GGG + tig0026425:45234-45253 Msa1429020:intron 45.0%
CAAAGATGGGAGAAAGAGAG+TGG + tig0026425:45247-45266 Msa1429020:CDS 45.0%
! CTGTTTGTTCTAAGCCCAGT+TGG - tig0026425:45303-45322 None:intergenic 45.0%
ACAAACAGAGCAACAAGTGC+TGG + tig0026425:45315-45334 Msa1429020:CDS 45.0%
CTGGTTACTGGAAAGCAACT+GGG + tig0026425:45334-45353 Msa1429020:CDS 45.0%
TTACTGGAAAGCAACTGGGA+AGG + tig0026425:45338-45357 Msa1429020:CDS 45.0%
GGTCTTCTTCATCCCCAAAA+GGG - tig0026425:45397-45416 None:intergenic 45.0%
!! TTTGGTCTTTTCACCACGAG+GGG - tig0026425:45442-45461 None:intergenic 45.0%
!! CATTTGGTCTTTTCACCACG+AGG - tig0026425:45444-45463 None:intergenic 45.0%
CTCGTGGTGAAAAGACCAAA+TGG + tig0026425:45442-45461 Msa1429020:CDS 45.0%
GTACTCATGCATGACCCATT+TGG - tig0026425:45460-45479 None:intergenic 45.0%
!! GTTCTTATCTTGGTGCTGCT+AGG + tig0026425:46446-46465 Msa1429020:intron 45.0%
GTTGCAAGTAAAGGTGGTGT+AGG - tig0026425:46710-46729 None:intergenic 45.0%
GAAGGTTGGAATGAAGGCAA+TGG - tig0026425:46794-46813 None:intergenic 45.0%
TAGTACGTAGTAGTTACCGC+AGG - tig0026425:47263-47282 None:intergenic 45.0%
AGCTAACTGGACATAGGCAT+AGG - tig0026425:47335-47354 None:intergenic 45.0%
!!! TAATATTTTATTAATATACA+AGG + tig0026425:46247-46266 Msa1429020:intron 5.0%
!!! AATATTTTATTAATATACAA+GGG + tig0026425:46248-46267 Msa1429020:intron 5.0%
AACGAACAAGGTCTACCACC+TGG + tig0026425:44725-44744 Msa1429020:CDS 50.0%
AAGGTCTACCACCTGGTTTC+AGG + tig0026425:44732-44751 Msa1429020:CDS 50.0%
GTTGGGTGAAACCTGAAACC+AGG - tig0026425:44746-44765 None:intergenic 50.0%
CCCATGGCTCACATCTATTG+AGG - tig0026425:44853-44872 None:intergenic 50.0%
CGAATGGTTGTGCGCAGAAA+TGG + tig0026425:45224-45243 Msa1429020:intron 50.0%
GTGCGCAGAAATGGCAAAGA+TGG + tig0026425:45233-45252 Msa1429020:intron 50.0%
!! GAGCAACAAGTGCTGGTTAC+TGG + tig0026425:45322-45341 Msa1429020:CDS 50.0%
GCTGGTTACTGGAAAGCAAC+TGG + tig0026425:45333-45352 Msa1429020:CDS 50.0%
GAAAGCAACTGGGAAGGACA+AGG + tig0026425:45344-45363 Msa1429020:CDS 50.0%
GGGTCTTCTTCATCCCCAAA+AGG - tig0026425:45398-45417 None:intergenic 50.0%
TCCTTCTCATACCACCTGCA+AGG + tig0026425:45503-45522 Msa1429020:CDS 50.0%
ACCTTGCAGGTGGTATGAGA+AGG - tig0026425:45507-45526 None:intergenic 50.0%
TGTAGAGTCTACCTTGCAGG+TGG - tig0026425:45517-45536 None:intergenic 50.0%
GAGTGTAGAGTCTACCTTGC+AGG - tig0026425:45520-45539 None:intergenic 50.0%
AGGAAGAGTGGGTGATATGC+AGG + tig0026425:46585-46604 Msa1429020:intron 50.0%
GCAAGTAAAGGTGGTGTAGG+AGG - tig0026425:46707-46726 None:intergenic 50.0%
! TGGAATGGTCTGCTGCTTCA+TGG - tig0026425:46900-46919 None:intergenic 50.0%
CTCCTTATTCCCTGTGGAGA+TGG + tig0026425:47039-47058 Msa1429020:CDS 50.0%
CTCCATCTCCACAGGGAATA+AGG - tig0026425:47044-47063 None:intergenic 50.0%
ATTCCCTGTGGAGATGGAGA+TGG + tig0026425:47045-47064 Msa1429020:CDS 50.0%
TCTCCATCTCCATCTCCACA+GGG - tig0026425:47051-47070 None:intergenic 50.0%
ATCTCCATCTCCATCTCCAC+AGG - tig0026425:47052-47071 None:intergenic 50.0%
TGTGGAGATGGAGATGGAGA+TGG + tig0026425:47051-47070 Msa1429020:CDS 50.0%
GAGATGGAGATGGAGATGGA+TGG + tig0026425:47055-47074 Msa1429020:CDS 50.0%
AGTAGAGGAGGAGGAGTAGA+TGG + tig0026425:47151-47170 Msa1429020:CDS 50.0%
AGGAGGAGTAGATGGTCCTA+TGG + tig0026425:47159-47178 Msa1429020:CDS 50.0%
GGAGGAGTAGATGGTCCTAT+GGG + tig0026425:47160-47179 Msa1429020:CDS 50.0%
TGAAGCTACTGCCTACTGCT+AGG - tig0026425:47207-47226 None:intergenic 50.0%
GATGTGTGGATGGAACGGAT+CGG + tig0026425:47422-47441 Msa1429020:three_prime_UTR 50.0%
GGGTGAAACCTGAAACCAGG+TGG - tig0026425:44743-44762 None:intergenic 55.0%
TGTGAGCCATGGGAACTTCC+AGG + tig0026425:44860-44879 Msa1429020:CDS 55.0%
TGGTGGCAGTTACACGTCCT+AGG + tig0026425:45122-45141 Msa1429020:intron 55.0%
TACAAAGGAAGGGCCCCTCG+TGG + tig0026425:45426-45445 Msa1429020:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0026425 gene 44671 47457 44671 ID=Msa1429020;Name=Msa1429020
tig0026425 mRNA 44671 47457 44671 ID=Msa1429020-mRNA-1;Parent=Msa1429020;Name=Msa1429020-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.33|1|1|1|3|265|366
tig0026425 exon 44671 44881 44671 ID=Msa1429020-mRNA-1:exon:6242;Parent=Msa1429020-mRNA-1
tig0026425 exon 45241 45524 45241 ID=Msa1429020-mRNA-1:exon:6243;Parent=Msa1429020-mRNA-1
tig0026425 exon 46587 47457 46587 ID=Msa1429020-mRNA-1:exon:6244;Parent=Msa1429020-mRNA-1
tig0026425 CDS 44671 44881 44671 ID=Msa1429020-mRNA-1:cds;Parent=Msa1429020-mRNA-1
tig0026425 CDS 45241 45524 45241 ID=Msa1429020-mRNA-1:cds;Parent=Msa1429020-mRNA-1
tig0026425 CDS 46587 47192 46587 ID=Msa1429020-mRNA-1:cds;Parent=Msa1429020-mRNA-1
tig0026425 three_prime_UTR 47193 47457 47193 ID=Msa1429020-mRNA-1:three_prime_utr;Parent=Msa1429020-mRNA-1
Gene Sequence

>Msa1429020

ATGATGTTAGCAATGGAAGAAGTACTATGTGAACTTAGTGATCATGAAAAGAAAAACGAACAAGGTCTACCACCTGGTTTCAGGTTTCACCCAACTGATGAAGAACTCATTACCTTTTATTTGGCTTCTAAGGTTTTCAAAAATACTTATTTCAATAATGTCAAGTTTGCTGAAGTTGACCTCAATAGATGTGAGCCATGGGAACTTCCAGAAATGGCAAAGATGGGAGAAAGAGAGTGGTATCTGTTCAGCTTGAGAGACAGAAAATACCCAACTGGGCTTAGAACAAACAGAGCAACAAGTGCTGGTTACTGGAAAGCAACTGGGAAGGACAAGGAAGTTTACAGCTGCAGTAGTAGTAGATCCCTTTTGGGGATGAAGAAGACCCTTGTTTTCTACAAAGGAAGGGCCCCTCGTGGTGAAAAGACCAAATGGGTCATGCATGAGTACCGTTTACACTCTCATCACTTTTCTCCTTCTCATACCACCTGCAAGGAAGAGTGGGTGATATGCAGGATATTTCATAAATCAGGGGAAAAGAGAAATTCACTACTCCAAATTCAAGGACATTTAGGTGGTAATCCTAATTTAACCCCCCAAAAAAGCTGTTTACCTCCTACACCACCTTTACTTGCAACTAATTCATTTACACAACTAGACCAAAATGACCAATTACTCTCACATTCTCATAATATTTTCCCATTGCCTTCATTCCAACCTTCCTTTTCAATGATCAATCACACCACCAGAAACAACAATAATAATCCATCTTCAGAACTACTCTTCAAGTCACAACAATATTACACCATGAAGCAGCAGACCATTCCAAAAACAGAAGCTACTTTCTATGATCAGCACCAATCACAATCACAATCACAATCAATAGATGATGCTCTTAACCTAAGATGGATTATTGACAATAATAATAATACTAATAATTATGAAAACTCCTTATTCCCTGTGGAGATGGAGATGGAGATGGATGGTGCTGCTCATGATCTGATTGCATTCTCAGGAGCTGCTACAAATGCTGAATTTAGGGACATGACAATTATTAACAGTAGAGGAGGAGGAGTAGATGGTCCTATGGGAATAGATTAA
Protein sequence

>Msa1429020

MMLAMEEVLCELSDHEKKNEQGLPPGFRFHPTDEELITFYLASKVFKNTYFNNVKFAEVDLNRCEPWELPEMAKMGEREWYLFSLRDRKYPTGLRTNRATSAGYWKATGKDKEVYSCSSSRSLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLHSHHFSPSHTTCKEEWVICRIFHKSGEKRNSLLQIQGHLGGNPNLTPQKSCLPPTPPLLATNSFTQLDQNDQLLSHSHNIFPLPSFQPSFSMINHTTRNNNNNPSSELLFKSQQYYTMKQQTIPKTEATFYDQHQSQSQSQSIDDALNLRWIIDNNNNTNNYENSLFPVEMEMEMDGAAHDLIAFSGAATNAEFRDMTIINSRGGGVDGPMGID*