Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434080 | XP_013457261.1 | 64.048 | 331 | 56 | 4 | 140 | 407 | 29 | 359 | 4.26e-124 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434080 | sp|P22738|RL32_ARATH | 58.075 | 322 | 74 | 5 | 140 | 402 | 29 | 348 | 1.55e-111 | 344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434080 | A0A072UNM0 | 64.048 | 331 | 56 | 4 | 140 | 407 | 29 | 359 | 2.04e-124 | 384 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1434080 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434080 | MtrunA17_Chr4g0051121 | 64.048 | 331 | 56 | 4 | 140 | 407 | 29 | 359 | 3.92e-128 | 384 |
| Msa1434080 | MtrunA17_Chr1g0201721 | 57.101 | 338 | 68 | 7 | 140 | 407 | 29 | 359 | 3.52e-112 | 343 |
| Msa1434080 | MtrunA17_Chr2g0287651 | 63.971 | 136 | 38 | 2 | 405 | 531 | 106 | 239 | 1.47e-48 | 183 |
| Msa1434080 | MtrunA17_Chr2g0287651 | 59.091 | 66 | 27 | 0 | 514 | 579 | 493 | 558 | 9.35e-18 | 87.8 |
| Msa1434080 | MtrunA17_Chr1g0203051 | 31.429 | 140 | 85 | 2 | 404 | 534 | 109 | 246 | 1.50e-17 | 87.0 |
| Msa1434080 | MtrunA17_Chr6g0479721 | 48.246 | 114 | 45 | 4 | 1 | 113 | 1 | 101 | 3.69e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434080 | AT1G61580.1 | 58.075 | 322 | 74 | 5 | 140 | 402 | 29 | 348 | 1.57e-112 | 344 |
| Msa1434080 | AT1G43170.1 | 51.374 | 364 | 117 | 5 | 140 | 446 | 29 | 389 | 5.41e-108 | 333 |
| Msa1434080 | AT1G43170.6 | 51.374 | 364 | 117 | 5 | 140 | 446 | 29 | 389 | 5.41e-108 | 333 |
| Msa1434080 | AT1G43170.2 | 51.374 | 364 | 117 | 5 | 140 | 446 | 29 | 389 | 5.41e-108 | 333 |
| Msa1434080 | AT1G43170.3 | 51.374 | 364 | 117 | 5 | 140 | 446 | 29 | 389 | 5.41e-108 | 333 |
| Msa1434080 | AT1G43170.9 | 51.374 | 364 | 117 | 5 | 140 | 446 | 29 | 389 | 5.41e-108 | 333 |
| Msa1434080 | AT1G43170.8 | 51.374 | 364 | 117 | 5 | 140 | 446 | 29 | 389 | 5.41e-108 | 333 |
| Msa1434080 | AT1G43170.7 | 51.374 | 364 | 117 | 5 | 140 | 446 | 29 | 389 | 5.41e-108 | 333 |
| Msa1434080 | AT1G43170.5 | 51.374 | 364 | 117 | 5 | 140 | 446 | 29 | 389 | 5.41e-108 | 333 |
| Msa1434080 | AT1G43170.4 | 56.738 | 282 | 88 | 7 | 189 | 446 | 35 | 306 | 3.01e-93 | 291 |
Find 161 sgRNAs with CRISPR-Local
Find 480 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATGCCTTTACTGATTT+TGG | 0.059598 | tig0027465:-15148 | Msa1434080:CDS |
| ATCCTTCTCCCACGTCTTTC+TGG | 0.095830 | tig0027465:+8875 | None:intergenic |
| ATCCTGCTCCCACGTCTTTC+TGG | 0.117062 | tig0027465:+8773 | None:intergenic |
| AATAAGAACTTGTCATATAA+TGG | 0.247315 | tig0027465:-10625 | Msa1434080:CDS |
| TGCATTTACACCCTGTTTAT+CGG | 0.264525 | tig0027465:-10698 | Msa1434080:CDS |
| TGTTCACTACAGACCCAAAA+AGG | 0.266221 | tig0027465:-10784 | Msa1434080:CDS |
| AAAAGCCTTCTTCTTTGATT+TGG | 0.275291 | tig0027465:+12693 | None:intergenic |
| GGTTTGGTAGGATCGTCTTT+TGG | 0.278169 | tig0027465:+13052 | None:intergenic |
| TCTCCACCTCCCTAACTATA+TGG | 0.297973 | tig0027465:+12987 | None:intergenic |
| AGTGATGATGGTGGTTGTTC+TGG | 0.317361 | tig0027465:-14920 | Msa1434080:CDS |
| CTGGGATGACCCATATAGTT+AGG | 0.327433 | tig0027465:-12997 | Msa1434080:CDS |
| AGAGTGACAACCCGCTTCTT+TGG | 0.327880 | tig0027465:+11575 | None:intergenic |
| CTGTTAGGAAGAGTGATATT+AGG | 0.340554 | tig0027465:-10947 | Msa1434080:intron |
| CTTAGGAAGGTTGCTTGTAT+TGG | 0.348287 | tig0027465:-11969 | Msa1434080:CDS |
| CATTGGTTGGAGTAGGTTCA+TGG | 0.364482 | tig0027465:+10724 | None:intergenic |
| GTGTTTCTTTCACAGTTGCC+AGG | 0.383039 | tig0027465:-11929 | Msa1434080:CDS |
| ATGGGTGGATTCCCTCATTA+TGG | 0.389175 | tig0027465:-11644 | Msa1434080:CDS |
| ACAAAAGAAAGCTCATTTGA+TGG | 0.389254 | tig0027465:-12189 | Msa1434080:CDS |
| GAAAGACTCACAGAGGTCTT+AGG | 0.395521 | tig0027465:-11986 | Msa1434080:CDS |
| ATAAGAACTTGTCATATAAT+GGG | 0.403187 | tig0027465:-10624 | Msa1434080:CDS |
| GGTACACCGGAACATGATTA+CGG | 0.407134 | tig0027465:-15127 | Msa1434080:CDS |
| TGTATGCATAGTCCACCTTC+TGG | 0.407194 | tig0027465:+12138 | None:intergenic |
| AGCATTTATCAAGGTTAGAT+AGG | 0.409294 | tig0027465:-10857 | Msa1434080:CDS |
| TCTTTCACAGTTGCCAGGGC+TGG | 0.417530 | tig0027465:-11924 | Msa1434080:CDS |
| GATTATAGTGCTGGTGATAA+AGG | 0.421954 | tig0027465:-14896 | Msa1434080:CDS |
| TCTTGTTCTTGCTCATACTC+AGG | 0.426916 | tig0027465:-12581 | Msa1434080:intron |
| AGCTCATTTGATGGAAATCC+AGG | 0.429460 | tig0027465:-12180 | Msa1434080:CDS |
| TGAAGGTGTTGTAACTCGTT+GGG | 0.432396 | tig0027465:-12027 | Msa1434080:CDS |
| GATGAGCGATATGAAGAAAC+TGG | 0.434304 | tig0027465:-14953 | Msa1434080:CDS |
| CTTGGTAAAAGCCTTCTACT+TGG | 0.445741 | tig0027465:+12737 | None:intergenic |
| TGGCTAGCATGCTGAGACAT+GGG | 0.445822 | tig0027465:+8691 | None:intergenic |
| CGAGGCTGCTGAAATCTATA+CGG | 0.448201 | tig0027465:-9665 | Msa1434080:CDS |
| GATATTAGGCGCAATGTTAA+CGG | 0.449906 | tig0027465:-10933 | Msa1434080:CDS |
| TCTACCATACCTGTCAAATT+CGG | 0.452800 | tig0027465:+11815 | None:intergenic |
| TAGCTAGCATGCTGAGACAT+GGG | 0.456278 | tig0027465:+8589 | None:intergenic |
| ATGAAGGTGTTGTAACTCGT+TGG | 0.463306 | tig0027465:-12028 | Msa1434080:CDS |
| AGGAGTCAACCTGCATGGTT+TGG | 0.464402 | tig0027465:+13036 | None:intergenic |
| GGGATACATGGTGGCTCAGA+AGG | 0.464555 | tig0027465:-10604 | Msa1434080:CDS |
| TGGCTAGCATGCTGAGACAT+GGG | 0.464703 | tig0027465:+8793 | None:intergenic |
| TAGTGAACACGGAGCCTAGC+TGG | 0.466097 | tig0027465:+10798 | None:intergenic |
| TCATGATTATCTTATGATCA+AGG | 0.469123 | tig0027465:-11612 | Msa1434080:CDS |
| GAAACATATCCGATCATTGT+TGG | 0.469215 | tig0027465:-15079 | Msa1434080:CDS |
| GATCTACAAGGTTGGCAAGC+AGG | 0.471641 | tig0027465:-11862 | Msa1434080:CDS |
| GAGATAAGAAGCATTTATCA+AGG | 0.475640 | tig0027465:-10866 | Msa1434080:CDS |
| AGACGTGGGAGCAGGATCAA+AGG | 0.477291 | tig0027465:-8767 | Msa1434080:CDS |
| GTAGATAAAGCACAGATTGA+TGG | 0.478198 | tig0027465:-10663 | Msa1434080:CDS |
| TGATTACGGTTCTACGGATG+TGG | 0.481654 | tig0027465:-15113 | Msa1434080:CDS |
| CAGCACAGGGGATGAAAACC+TGG | 0.488423 | tig0027465:+9714 | None:intergenic |
| CTGGCTAGCATGCTGAGACA+TGG | 0.489602 | tig0027465:+8792 | None:intergenic |
| AGACCTCTGTGAGTCTTTCG+TGG | 0.489617 | tig0027465:+11990 | None:intergenic |
| TGTTCTGGTGATTATAGTGC+TGG | 0.489646 | tig0027465:-14905 | Msa1434080:CDS |
| CGCAGATGAGTTGTCAGCAC+AGG | 0.491267 | tig0027465:+9700 | None:intergenic |
| AAACATATCCGATCATTGTT+GGG | 0.491804 | tig0027465:-15078 | Msa1434080:CDS |
| CTCCACCTCCCTAACTATAT+GGG | 0.492400 | tig0027465:+12988 | None:intergenic |
| GTAGAACCGTAATCATGTTC+CGG | 0.492886 | tig0027465:+15121 | None:intergenic |
| TTGGCTAGCATGCTGAGACA+TGG | 0.494151 | tig0027465:+8690 | None:intergenic |
| ATGATCAAGGGAGGCTGTGT+TGG | 0.494294 | tig0027465:-11599 | Msa1434080:CDS |
| AGACGTGGGAGAAGGATCAA+AGG | 0.494945 | tig0027465:-8869 | Msa1434080:CDS |
| AGTTCTTGTAAAAGCCTACT+TGG | 0.497703 | tig0027465:+12719 | None:intergenic |
| ACTGAAGGTAAGGAAGTTGA+AGG | 0.498152 | tig0027465:-12219 | Msa1434080:intron |
| TGATGGCTGTATGTGACTCT+TGG | 0.498553 | tig0027465:+11838 | None:intergenic |
| CTCTGTGAGTCTTTCGTGGA+AGG | 0.499855 | tig0027465:+11994 | None:intergenic |
| GCAGTATGTATGCAACAAGC+AGG | 0.502107 | tig0027465:-10895 | Msa1434080:CDS |
| TTACTGTTCCACCATTCACC+TGG | 0.504547 | tig0027465:+12162 | None:intergenic |
| GAAGATGATGATGTAGTTGT+TGG | 0.505754 | tig0027465:-14731 | Msa1434080:intron |
| ACTAAAGGTAAAGGTTATGA+AGG | 0.505989 | tig0027465:-12044 | Msa1434080:intron |
| ACATCACACTTACTTGAACT+AGG | 0.506150 | tig0027465:+12962 | None:intergenic |
| GACGTGGGAGCAGGATCAAA+GGG | 0.507704 | tig0027465:-8766 | Msa1434080:CDS |
| AGCCAGAAAGACGTGGGAGC+AGG | 0.508124 | tig0027465:-8775 | Msa1434080:CDS |
| GTTGCCAGGGCTGGTCAGAA+TGG | 0.509746 | tig0027465:-11915 | Msa1434080:CDS |
| GCTCAGAAGGGTGGATATCC+CGG | 0.515458 | tig0027465:-10591 | Msa1434080:CDS |
| CCAGACTTGTAACCCACAAA+AGG | 0.520483 | tig0027465:+13016 | None:intergenic |
| GACGTGGGAGGAGGATCAAA+GGG | 0.523575 | tig0027465:-8664 | Msa1434080:CDS |
| ATATCCATTCTGACCAGCCC+TGG | 0.525294 | tig0027465:+11911 | None:intergenic |
| CCGATCATTGTTGGGAGTGG+TGG | 0.525336 | tig0027465:-15070 | Msa1434080:CDS |
| CGGTGTACCAAAATCAGTAA+AGG | 0.530148 | tig0027465:+15141 | None:intergenic |
| TGGGATGACCCATATAGTTA+GGG | 0.533545 | tig0027465:-12996 | Msa1434080:CDS |
| CAGCCATCACCGAATTTGAC+AGG | 0.540792 | tig0027465:-11824 | Msa1434080:intron |
| CCACCACTCCCAACAATGAT+CGG | 0.545431 | tig0027465:+15070 | None:intergenic |
| GTGAAAGAAGAAATTATGAA+AGG | 0.548916 | tig0027465:-9625 | Msa1434080:CDS |
| AGACGTGGGAGGAGGATCAA+AGG | 0.549459 | tig0027465:-8665 | Msa1434080:CDS |
| TGAGAAGGATATTACTCCGA+TGG | 0.550874 | tig0027465:-11663 | Msa1434080:CDS |
| TGTTTCTTTCACAGTTGCCA+GGG | 0.552169 | tig0027465:-11928 | Msa1434080:CDS |
| GGAACATGATTACGGTTCTA+CGG | 0.552732 | tig0027465:-15119 | Msa1434080:CDS |
| TTAGCTAGCATGCTGAGACA+TGG | 0.553987 | tig0027465:+8588 | None:intergenic |
| TTGTCATATAATGGGATACA+TGG | 0.555297 | tig0027465:-10616 | Msa1434080:CDS |
| TGATTCACCACACCATAATG+AGG | 0.560682 | tig0027465:+11632 | None:intergenic |
| GACGTGGGAGAAGGATCAAA+GGG | 0.564696 | tig0027465:-8868 | Msa1434080:CDS |
| GACCCATATAGTTAGGGAGG+TGG | 0.564750 | tig0027465:-12990 | Msa1434080:CDS |
| TGTAAATGCACAGCATTGGT+TGG | 0.565762 | tig0027465:+10711 | None:intergenic |
| CTGGGCCAAATCAAAGAAGA+AGG | 0.566302 | tig0027465:-12698 | Msa1434080:CDS |
| AGCCAGAAAGACGTGGGAGA+AGG | 0.570261 | tig0027465:-8877 | Msa1434080:CDS |
| AATAAGAAGATCTACAAGGT+TGG | 0.571689 | tig0027465:-11870 | Msa1434080:CDS |
| TACATGGTGGCTCAGAAGGG+TGG | 0.573659 | tig0027465:-10600 | Msa1434080:CDS |
| TATCCGATCATTGTTGGGAG+TGG | 0.573961 | tig0027465:-15073 | Msa1434080:CDS |
| TTTGGAAAACTGCATCCACT+GGG | 0.575475 | tig0027465:+12096 | None:intergenic |
| GCAGATGAGTTGTCAGCACA+GGG | 0.575960 | tig0027465:+9701 | None:intergenic |
| CTGTGTTGGACCAAAGAAGC+GGG | 0.582412 | tig0027465:-11585 | Msa1434080:CDS |
| AGGGTGTAAATGCACAGCAT+TGG | 0.584309 | tig0027465:+10707 | None:intergenic |
| CAGTATGTATGCAACAAGCA+GGG | 0.584535 | tig0027465:-10894 | Msa1434080:CDS |
| GGTGATAAAGGTGAAGATGA+TGG | 0.589452 | tig0027465:-14884 | Msa1434080:CDS |
| GCATGCTAGCCAGAAAGACG+TGG | 0.591586 | tig0027465:-8782 | Msa1434080:CDS |
| GCATGCTAGCCAGAAAGACG+TGG | 0.591586 | tig0027465:-8884 | Msa1434080:CDS |
| ATACCTGTCAAATTCGGTGA+TGG | 0.592064 | tig0027465:+11821 | None:intergenic |
| CATGATTATCTTATGATCAA+GGG | 0.593532 | tig0027465:-11611 | Msa1434080:CDS |
| ACTGTGAAAGAAACACGGGC+AGG | 0.602337 | tig0027465:+11936 | None:intergenic |
| AGCAAGAACAAGAATAACAA+TGG | 0.604954 | tig0027465:+12591 | None:intergenic |
| TGCTAACTGCAGGACTGAGA+AGG | 0.605725 | tig0027465:-11678 | Msa1434080:intron |
| GTCAACCTGCATGGTTTGGT+AGG | 0.607401 | tig0027465:+13040 | None:intergenic |
| GGAGACAATGAAAGTGATGA+TGG | 0.609236 | tig0027465:-14932 | Msa1434080:CDS |
| GGATACATGGTGGCTCAGAA+GGG | 0.612576 | tig0027465:-10603 | Msa1434080:CDS |
| AATCTGTGCTTTATCTACCT+CGG | 0.613894 | tig0027465:+10668 | None:intergenic |
| AGTGAAGGTCATGGTAGTGA+AGG | 0.614950 | tig0027465:-14770 | Msa1434080:CDS |
| AAGGATATTACTCCGATGGG+TGG | 0.616580 | tig0027465:-11659 | Msa1434080:CDS |
| ACGATCCTACCAAACCATGC+AGG | 0.616668 | tig0027465:-13045 | Msa1434080:CDS |
| TCTGCGTTGTCTTGAACGCG+AGG | 0.617404 | tig0027465:-9683 | Msa1434080:CDS |
| GATGAAAGTCAAGGTGATGA+AGG | 0.618015 | tig0027465:-14851 | Msa1434080:CDS |
| CTGAAGGTAAGGAAGTTGAA+GGG | 0.618478 | tig0027465:-12218 | Msa1434080:intron |
| TTGATGGAAATCCAGGTGAA+TGG | 0.624401 | tig0027465:-12173 | Msa1434080:CDS |
| GAAGGTGTTGTAACTCGTTG+GGG | 0.631562 | tig0027465:-12026 | Msa1434080:CDS |
| GATTCACCACACCATAATGA+GGG | 0.633956 | tig0027465:+11633 | None:intergenic |
| AGTATGTATGCAACAAGCAG+GGG | 0.634341 | tig0027465:-10893 | Msa1434080:CDS |
| GAGAAGGATATTACTCCGAT+GGG | 0.634704 | tig0027465:-11662 | Msa1434080:CDS |
| ACAAAAGGAGTCAACCTGCA+TGG | 0.637584 | tig0027465:+13031 | None:intergenic |
| TGCACAGCATTGGTTGGAGT+AGG | 0.638605 | tig0027465:+10717 | None:intergenic |
| CTCGTACAAAGTGTCCAGCT+AGG | 0.644688 | tig0027465:-10812 | Msa1434080:CDS |
| ATGGAAATCCAGGTGAATGG+TGG | 0.650056 | tig0027465:-12170 | Msa1434080:CDS |
| TGGAACAGTAAGCCAGAAGG+TGG | 0.655815 | tig0027465:-12150 | Msa1434080:CDS |
| GGCAACTGTGAAAGAAACAC+GGG | 0.658795 | tig0027465:+11932 | None:intergenic |
| GCTGTGTTGGACCAAAGAAG+CGG | 0.659280 | tig0027465:-11586 | Msa1434080:CDS |
| GACTCACAGAGGTCTTAGGA+AGG | 0.659357 | tig0027465:-11982 | Msa1434080:CDS |
| CTGTGAAAGAAACACGGGCA+GGG | 0.660981 | tig0027465:+11937 | None:intergenic |
| TGGCAACTGTGAAAGAAACA+CGG | 0.665100 | tig0027465:+11931 | None:intergenic |
| TGGATTCCCTCATTATGGTG+TGG | 0.666509 | tig0027465:-11639 | Msa1434080:CDS |
| GGTGATGAAAGTGAAGGTCA+TGG | 0.667300 | tig0027465:-14779 | Msa1434080:CDS |
| GATTATCTTATGATCAAGGG+AGG | 0.667777 | tig0027465:-11608 | Msa1434080:CDS |
| TCATATAATGGGATACATGG+TGG | 0.669224 | tig0027465:-10613 | Msa1434080:CDS |
| TGGTGGAACAGTAAGCCAGA+AGG | 0.669829 | tig0027465:-12153 | Msa1434080:CDS |
| GATGACCCATATAGTTAGGG+AGG | 0.674070 | tig0027465:-12993 | Msa1434080:CDS |
| GCGGAATAAGAAGATCTACA+AGG | 0.677047 | tig0027465:-11874 | Msa1434080:CDS |
| GATGATGATGATGTGAGTCA+TGG | 0.679569 | tig0027465:-15010 | Msa1434080:intron |
| TTAACGGTGAGATTGTAATG+AGG | 0.680367 | tig0027465:-10917 | Msa1434080:CDS |
| TAATGAGGGAATCCACCCAT+CGG | 0.681222 | tig0027465:+11647 | None:intergenic |
| GATATCATCATCGTATCGAG+CGG | 0.685394 | tig0027465:-11893 | Msa1434080:CDS |
| AGGTGTTGCACTGAGTGTGA+AGG | 0.686205 | tig0027465:-9605 | Msa1434080:CDS |
| CATGCTAGCCAGAAAGACGT+GGG | 0.690224 | tig0027465:-8781 | Msa1434080:CDS |
| AGTCAAGGTGATGAAGGTGA+AGG | 0.696692 | tig0027465:-14845 | Msa1434080:CDS |
| CATGCTAGCCAGAAAGACGT+GGG | 0.697336 | tig0027465:-8883 | Msa1434080:CDS |
| CTTCGAAAAGCAAATCCCAG+TGG | 0.698185 | tig0027465:-12111 | Msa1434080:CDS |
| AGTGAAGGTCATGCTAGTGA+AGG | 0.698593 | tig0027465:-14815 | Msa1434080:CDS |
| TGTTTATCGGAAAATATCCG+AGG | 0.704996 | tig0027465:-10685 | Msa1434080:CDS |
| GACAATGAAAGTGATGATGG+TGG | 0.706532 | tig0027465:-14929 | Msa1434080:CDS |
| ATTGATGGTCTTCAGTCACA+CGG | 0.708259 | tig0027465:-10648 | Msa1434080:CDS |
| GTGGGAGGAGGATCAAAGGG+AGG | 0.710691 | tig0027465:-8661 | Msa1434080:CDS |
| GTGGGAGCAGGATCAAAGGG+AGG | 0.712846 | tig0027465:-8763 | Msa1434080:CDS |
| AGTGAAGGTGATGAAAGTGA+AGG | 0.717258 | tig0027465:-14785 | Msa1434080:CDS |
| AGTGAAGGTGATGAAAGTGA+AGG | 0.731903 | tig0027465:-14800 | Msa1434080:CDS |
| GGTGAAGGTGATGAAAGTGA+AGG | 0.739796 | tig0027465:-14830 | Msa1434080:CDS |
| AGTGAATGCGATGAAAGTCA+AGG | 0.740679 | tig0027465:-14860 | Msa1434080:CDS |
| CTTCCACGAAAGACTCACAG+AGG | 0.747305 | tig0027465:-11993 | Msa1434080:CDS |
| CAGATGAGTTGTCAGCACAG+GGG | 0.773409 | tig0027465:+9702 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATCTTTGAATTTAAAT+CGG | + | tig0027465:12499-12518 | None:intergenic | 10.0% |
| !!! | TTAAATTAAAAGATTTTAGA+TGG | - | tig0027465:12556-12575 | Msa1434080:intron | 10.0% |
| !!! | TAAATTAAAAGATTTTAGAT+GGG | - | tig0027465:12557-12576 | Msa1434080:intron | 10.0% |
| !!! | TAAATTAAACGATTTTAAAT+CGG | - | tig0027465:12591-12610 | Msa1434080:CDS | 10.0% |
| !! | TTAAATCAGAGAAATTAAAT+AGG | - | tig0027465:9112-9131 | Msa1434080:intron | 15.0% |
| !!! | AACTACAATAACTTTTAAAT+AGG | - | tig0027465:9180-9199 | Msa1434080:intron | 15.0% |
| !!! | AGTGTTTTTTGTTTTATTTT+TGG | + | tig0027465:9246-9265 | None:intergenic | 15.0% |
| !! | CACTAATAAACAATTTAAAA+AGG | + | tig0027465:11252-11271 | None:intergenic | 15.0% |
| !!! | TTTTAAATTGTTTATTAGTG+AGG | - | tig0027465:11252-11271 | Msa1434080:intron | 15.0% |
| !! | TATATTTATTCTCTTAAATG+TGG | - | tig0027465:11363-11382 | Msa1434080:intron | 15.0% |
| !! | TAATTTATTCTGTTTAAATG+TGG | - | tig0027465:11438-11457 | Msa1434080:intron | 15.0% |
| !!! | ATTTTTTTTATACACGATTA+CGG | + | tig0027465:12445-12464 | None:intergenic | 15.0% |
| !! | AAATATAGAGAGAATTTAAA+TGG | - | tig0027465:12467-12486 | Msa1434080:intron | 15.0% |
| !! | AATATAGAGAGAATTTAAAT+GGG | - | tig0027465:12468-12487 | Msa1434080:intron | 15.0% |
| !!! | AAATTAAACGATTTTAAATC+GGG | - | tig0027465:12592-12611 | Msa1434080:CDS | 15.0% |
| !!! | ATCAAATACACTTTTTAAAT+CGG | - | tig0027465:12634-12653 | Msa1434080:CDS | 15.0% |
| !!! | TACGATTTTTATTATAAGTA+CGG | - | tig0027465:12761-12780 | Msa1434080:intron | 15.0% |
| !!! | ATCTTTTTTCTTTTTAAGTC+AGG | + | tig0027465:9210-9229 | None:intergenic | 20.0% |
| !!! | TTAACTGTTACTTAAATGTT+TGG | - | tig0027465:9825-9844 | Msa1434080:intron | 20.0% |
| !!! | TCTAAGTTTGATTCAATTTT+AGG | - | tig0027465:9968-9987 | Msa1434080:intron | 20.0% |
| !! | GTTTATTGTGATATACAAAT+CGG | - | tig0027465:10123-10142 | Msa1434080:intron | 20.0% |
| !!! | ATATTATACGAACTTTGTTT+TGG | - | tig0027465:10161-10180 | Msa1434080:intron | 20.0% |
| !!! | ACTGATTTGTATTTCAAAAT+TGG | + | tig0027465:10470-10489 | None:intergenic | 20.0% |
| !! | TATGAAGTTCTACAATATAA+AGG | + | tig0027465:10907-10926 | None:intergenic | 20.0% |
| !!! | TTCATATTTTTTGGTATACT+TGG | + | tig0027465:11082-11101 | None:intergenic | 20.0% |
| !!! | TTCATCAGTTTCATATTTTT+TGG | + | tig0027465:11091-11110 | None:intergenic | 20.0% |
| !! | AAAAAATATGAAACTGATGA+AGG | - | tig0027465:11090-11109 | Msa1434080:intron | 20.0% |
| !!! | AAGACCAATAATAACATTTT+TGG | + | tig0027465:11195-11214 | None:intergenic | 20.0% |
| !! | ATCCAAGATAAAAACTTAAT+TGG | + | tig0027465:11971-11990 | None:intergenic | 20.0% |
| !!! | TTTTTATCTTGGATAATCTT+AGG | - | tig0027465:11977-11996 | Msa1434080:CDS | 20.0% |
| !! | AAATATCATATGATCAATGA+AGG | + | tig0027465:12406-12425 | None:intergenic | 20.0% |
| !! | ATATAGAGAGAATTTAAATG+GGG | - | tig0027465:12469-12488 | Msa1434080:intron | 20.0% |
| !!! | TGAATATGACTTTTTAAATC+GGG | + | tig0027465:12682-12701 | None:intergenic | 20.0% |
| !!! | GTGAATATGACTTTTTAAAT+CGG | + | tig0027465:12683-12702 | None:intergenic | 20.0% |
| !!! | CAGAAAATACTTTTTAAATC+AGG | + | tig0027465:12705-12724 | None:intergenic | 20.0% |
| !! | AATAAGAACTTGTCATATAA+TGG | - | tig0027465:13123-13142 | Msa1434080:intron | 20.0% |
| !! | ATAAGAACTTGTCATATAAT+GGG | - | tig0027465:13124-13143 | Msa1434080:intron | 20.0% |
| !! | AAATCATAAAGAGTTATGTT+AGG | - | tig0027465:13923-13942 | Msa1434080:intron | 20.0% |
| !! | CTTCAACACAAAAAAAATAT+GGG | + | tig0027465:14305-14324 | None:intergenic | 20.0% |
| ! | AATTATACGAAGAATACTCA+AGG | - | tig0027465:8762-8781 | Msa1434080:CDS | 25.0% |
| ! | ATTATACGAAGAATACTCAA+GGG | - | tig0027465:8763-8782 | Msa1434080:CDS | 25.0% |
| ! | ATAAATTCATTAACTGCTGA+AGG | - | tig0027465:9056-9075 | Msa1434080:intron | 25.0% |
| ! | TGTAGTTAAAACCTTATTAC+CGG | + | tig0027465:9167-9186 | None:intergenic | 25.0% |
| !!! | TTTTTCTTTTTAAGTCAGGT+GGG | + | tig0027465:9206-9225 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTTTTAAGTCAGG+TGG | + | tig0027465:9207-9226 | None:intergenic | 25.0% |
| ! | AATGTTTGGAAAATTTGTGA+AGG | - | tig0027465:9839-9858 | Msa1434080:intron | 25.0% |
| !! | ACTAATTTGTATCTCAAAGT+TGG | + | tig0027465:10295-10314 | None:intergenic | 25.0% |
| !!! | GTGTTGATAATTTGAATATG+AGG | - | tig0027465:10325-10344 | Msa1434080:intron | 25.0% |
| !! | CAAATTAGATAAAGTGTTCA+GGG | + | tig0027465:10656-10675 | None:intergenic | 25.0% |
| ! | ATGATTAACATGTGATTGTT+GGG | - | tig0027465:10823-10842 | Msa1434080:CDS | 25.0% |
| ! | TGGTTCATTATATATGTTCT+TGG | - | tig0027465:10861-10880 | Msa1434080:CDS | 25.0% |
| ! | GGTACCAAAAATGTTATTAT+TGG | - | tig0027465:11188-11207 | Msa1434080:intron | 25.0% |
| ! | GAGAATAAATATAACACGAA+AGG | + | tig0027465:11356-11375 | None:intergenic | 25.0% |
| ! | AACTACTGTTAATGTTGTAA+CGG | - | tig0027465:11488-11507 | Msa1434080:intron | 25.0% |
| !! | TGTATTTCTTTGTTTACTGA+AGG | - | tig0027465:11514-11533 | Msa1434080:intron | 25.0% |
| !! | TATCAATCATCTCATCTTTT+TGG | + | tig0027465:11673-11692 | None:intergenic | 25.0% |
| !! | TGCCAATTAAGTTTTTATCT+TGG | - | tig0027465:11966-11985 | Msa1434080:CDS | 25.0% |
| ! | TCATGATTATCTTATGATCA+AGG | - | tig0027465:12136-12155 | Msa1434080:CDS | 25.0% |
| ! | CATGATTATCTTATGATCAA+GGG | - | tig0027465:12137-12156 | Msa1434080:CDS | 25.0% |
| ! | ATAAGCTATTAACATGACAT+GGG | + | tig0027465:12248-12267 | None:intergenic | 25.0% |
| ! | AATAAGCTATTAACATGACA+TGG | + | tig0027465:12249-12268 | None:intergenic | 25.0% |
| !!! | TCTTGTTAGCCTTTTTTAAA+TGG | - | tig0027465:12522-12541 | Msa1434080:intron | 25.0% |
| ! | CTTAACATTCAGATAGTTTA+GGG | + | tig0027465:13266-13285 | None:intergenic | 25.0% |
| ! | ACTTAACATTCAGATAGTTT+AGG | + | tig0027465:13267-13286 | None:intergenic | 25.0% |
| ! | AGAATATTCACAAAAGGAAT+GGG | + | tig0027465:13302-13321 | None:intergenic | 25.0% |
| !!! | AACGTTTGAAATGTCTATTT+TGG | - | tig0027465:13335-13354 | Msa1434080:intron | 25.0% |
| !!! | ACGTTTGAAATGTCTATTTT+GGG | - | tig0027465:13336-13355 | Msa1434080:intron | 25.0% |
| ! | AAACAATAGACACTTATATG+TGG | - | tig0027465:13518-13537 | Msa1434080:intron | 25.0% |
| ! | AACAATAGACACTTATATGT+GGG | - | tig0027465:13519-13538 | Msa1434080:intron | 25.0% |
| !! | AGCAATGTACTCTAATTTTA+CGG | - | tig0027465:13732-13751 | Msa1434080:intron | 25.0% |
| !! | TTCTTTGTTCTCATATGTTT+TGG | + | tig0027465:13827-13846 | None:intergenic | 25.0% |
| ! | ATATGAGAACAAAGAATTGT+GGG | - | tig0027465:13831-13850 | Msa1434080:intron | 25.0% |
| ! | GTGAAAGAAGAAATTATGAA+AGG | - | tig0027465:14123-14142 | Msa1434080:intron | 25.0% |
| ! | CCTTCAACACAAAAAAAATA+TGG | + | tig0027465:14306-14325 | None:intergenic | 25.0% |
| !!! | CCATATTTTTTTTGTGTTGA+AGG | - | tig0027465:14303-14322 | Msa1434080:intron | 25.0% |
| !! | ATGTGTTTACAAATTTTTGC+AGG | - | tig0027465:14467-14486 | Msa1434080:intron | 25.0% |
| !! | TGTGTTTACAAATTTTTGCA+GGG | - | tig0027465:14468-14487 | Msa1434080:intron | 25.0% |
| !! | GAACATTTTCTTACAAACTT+TGG | + | tig0027465:14667-14686 | None:intergenic | 25.0% |
| !!! | AACAATGCCTTTACTGATTT+TGG | - | tig0027465:8600-8619 | Msa1434080:CDS | 30.0% |
| AAACATATCCGATCATTGTT+GGG | - | tig0027465:8670-8689 | Msa1434080:CDS | 30.0% | |
| !! | GGTTATGTTTTTAAATCTGG+TGG | + | tig0027465:9145-9164 | None:intergenic | 30.0% |
| CCAGATTTAAAAACATAACC+CGG | - | tig0027465:9145-9164 | Msa1434080:intron | 30.0% | |
| AAAAACATAACCCGGTAATA+AGG | - | tig0027465:9153-9172 | Msa1434080:intron | 30.0% | |
| GTAGTTAAAACCTTATTACC+GGG | + | tig0027465:9166-9185 | None:intergenic | 30.0% | |
| ATCACACATGATGAGAATAT+GGG | + | tig0027465:9380-9399 | None:intergenic | 30.0% | |
| AATCACACATGATGAGAATA+TGG | + | tig0027465:9381-9400 | None:intergenic | 30.0% | |
| TCTCAATTATACGCAATTCA+TGG | - | tig0027465:9417-9436 | Msa1434080:intron | 30.0% | |
| ATTCATGGATTTCCAAATCT+AGG | - | tig0027465:9432-9451 | Msa1434080:intron | 30.0% | |
| TTCATGGATTTCCAAATCTA+GGG | - | tig0027465:9433-9452 | Msa1434080:intron | 30.0% | |
| AATTTACTCTTTGACGATGA+CGG | + | tig0027465:9507-9526 | None:intergenic | 30.0% | |
| AATCAGATAAGAGGATGAAA+AGG | + | tig0027465:9531-9550 | None:intergenic | 30.0% | |
| TAGTTTCTGTTGTGGATTTA+GGG | - | tig0027465:9584-9603 | Msa1434080:intron | 30.0% | |
| TGACAATGTGAAGTTCAAAT+TGG | + | tig0027465:9994-10013 | None:intergenic | 30.0% | |
| CATATAAGCTAGTGATTGTT+CGG | + | tig0027465:10205-10224 | None:intergenic | 30.0% | |
| AATGTGATTAACTTTGTCTG+TGG | - | tig0027465:10439-10458 | Msa1434080:intron | 30.0% | |
| AATGTGATTTACTTTGTCTG+TGG | - | tig0027465:10534-10553 | Msa1434080:intron | 30.0% | |
| AAAAATAGGCATAGGATAAC+AGG | + | tig0027465:10568-10587 | None:intergenic | 30.0% | |
| ATAGGTGTAAAAATAGGCAT+AGG | + | tig0027465:10576-10595 | None:intergenic | 30.0% | |
| AGGTGAATAGGTGTAAAAAT+AGG | + | tig0027465:10582-10601 | None:intergenic | 30.0% | |
| AGGTGATATATTAGGTGAAT+AGG | + | tig0027465:10594-10613 | None:intergenic | 30.0% | |
| ATGCTACTAGGTGATATATT+AGG | + | tig0027465:10602-10621 | None:intergenic | 30.0% | |
| TAATATATCACCTAGTAGCA+TGG | - | tig0027465:10601-10620 | Msa1434080:CDS | 30.0% | |
| ! | GCAAATTAGATAAAGTGTTC+AGG | + | tig0027465:10657-10676 | None:intergenic | 30.0% |
| ! | TTCAAGTAAGTGTGATGTTT+TGG | - | tig0027465:10791-10810 | Msa1434080:CDS | 30.0% |
| CATGATTAACATGTGATTGT+TGG | - | tig0027465:10822-10841 | Msa1434080:CDS | 30.0% | |
| !!! | TTGGGTTGGTTATTTTTTCA+TGG | - | tig0027465:10841-10860 | Msa1434080:CDS | 30.0% |
| AAAAGCCTTCTTCTTTGATT+TGG | + | tig0027465:11058-11077 | None:intergenic | 30.0% | |
| AGCAAGAACAAGAATAACAA+TGG | + | tig0027465:11160-11179 | None:intergenic | 30.0% | |
| TTTATTAGTGAGGCATATCT+GGG | - | tig0027465:11262-11281 | Msa1434080:intron | 30.0% | |
| ! | TTCTTTGTTTACTGAAGGTA+AGG | - | tig0027465:11519-11538 | Msa1434080:intron | 30.0% |
| ACAAAAGAAAGCTCATTTGA+TGG | - | tig0027465:11559-11578 | Msa1434080:CDS | 30.0% | |
| GATGAGATGATTGATATCAT+TGG | - | tig0027465:11677-11696 | Msa1434080:intron | 30.0% | |
| GATATCATTGGAGTAACTAA+AGG | - | tig0027465:11689-11708 | Msa1434080:intron | 30.0% | |
| ATTGGAGTAACTAAAGGTAA+AGG | - | tig0027465:11695-11714 | Msa1434080:intron | 30.0% | |
| ACTAAAGGTAAAGGTTATGA+AGG | - | tig0027465:11704-11723 | Msa1434080:intron | 30.0% | |
| AATAAGAAGATCTACAAGGT+TGG | - | tig0027465:11878-11897 | Msa1434080:CDS | 30.0% | |
| ! | CGGTTGATACCATTTAAAAA+AGG | + | tig0027465:12534-12553 | None:intergenic | 30.0% |
| ! | AACGATTTTAAATCGGGTAA+AGG | - | tig0027465:12598-12617 | Msa1434080:CDS | 30.0% |
| ! | ACGATTTTAAATCGGGTAAA+GGG | - | tig0027465:12599-12618 | Msa1434080:CDS | 30.0% |
| TATAAGTACGGTAAGTGTAA+TGG | - | tig0027465:12773-12792 | Msa1434080:intron | 30.0% | |
| !! | GAGATAAGAAGCATTTATCA+AGG | - | tig0027465:12882-12901 | Msa1434080:intron | 30.0% |
| AGCATTTATCAAGGTTAGAT+AGG | - | tig0027465:12891-12910 | Msa1434080:intron | 30.0% | |
| ! | ACAACATATCTACCCTTTTT+GGG | + | tig0027465:12980-12999 | None:intergenic | 30.0% |
| !!! | TGTTGTGTCTATTTTTGAAG+AGG | - | tig0027465:12994-13013 | Msa1434080:CDS | 30.0% |
| !!! | GTTGTGTCTATTTTTGAAGA+GGG | - | tig0027465:12995-13014 | Msa1434080:CDS | 30.0% |
| ! | TTGTCATATAATGGGATACA+TGG | - | tig0027465:13132-13151 | Msa1434080:intron | 30.0% |
| ! | AAAAATGCGTGCTGTTATTA+AGG | - | tig0027465:13222-13241 | Msa1434080:intron | 30.0% |
| GAATATTCACAAAAGGAATG+GGG | + | tig0027465:13301-13320 | None:intergenic | 30.0% | |
| CAGAATATTCACAAAAGGAA+TGG | + | tig0027465:13303-13322 | None:intergenic | 30.0% | |
| !! | AGATCAGATTATTTCTGCTT+TGG | - | tig0027465:13373-13392 | Msa1434080:intron | 30.0% |
| CAAATATAACTGTTTGTGAG+TGG | + | tig0027465:13477-13496 | None:intergenic | 30.0% | |
| CACTCACAAACAGTTATATT+TGG | - | tig0027465:13475-13494 | Msa1434080:intron | 30.0% | |
| ! | ACCAGTTTTCTAGATTGTAT+GGG | - | tig0027465:13547-13566 | Msa1434080:intron | 30.0% |
| TTCCAAAAAAGCTGAATTCT+TGG | + | tig0027465:13701-13720 | None:intergenic | 30.0% | |
| !!! | AAGAATTCAGCTTTTTTGGA+AGG | - | tig0027465:13700-13719 | Msa1434080:intron | 30.0% |
| ! | AATGTACTCTAATTTTACGG+AGG | - | tig0027465:13735-13754 | Msa1434080:intron | 30.0% |
| ! | AGGATGAAATTGAAGAGTTT+TGG | - | tig0027465:13755-13774 | Msa1434080:intron | 30.0% |
| ! | GGATGAAATTGAAGAGTTTT+GGG | - | tig0027465:13756-13775 | Msa1434080:intron | 30.0% |
| ! | GATGAAATTGAAGAGTTTTG+GGG | - | tig0027465:13757-13776 | Msa1434080:intron | 30.0% |
| !! | ATGAAATTGAAGAGTTTTGG+GGG | - | tig0027465:13758-13777 | Msa1434080:intron | 30.0% |
| CATATGAGAACAAAGAATTG+TGG | - | tig0027465:13830-13849 | Msa1434080:intron | 30.0% | |
| AAGAGTTATGTTAGGAAGAA+AGG | - | tig0027465:13931-13950 | Msa1434080:intron | 30.0% | |
| !! | TTGTAGCTGATTTTAAATCC+AGG | - | tig0027465:14016-14035 | Msa1434080:intron | 30.0% |
| GAAGTTGACAAAATATCTTG+AGG | - | tig0027465:14197-14216 | Msa1434080:intron | 30.0% | |
| TTGACAAAATATCTTGAGGA+GGG | - | tig0027465:14201-14220 | Msa1434080:intron | 30.0% | |
| ACAAAAAAAATATGGGAGCA+TGG | + | tig0027465:14298-14317 | None:intergenic | 30.0% | |
| !! | AATGTTTGATTTTGTTGCGT+TGG | - | tig0027465:14350-14369 | Msa1434080:intron | 30.0% |
| TGCTCCAAAGAAGAATAAAA+AGG | - | tig0027465:14639-14658 | Msa1434080:intron | 30.0% | |
| GTAAGAAAATGTTCAAACTG+TGG | - | tig0027465:14673-14692 | Msa1434080:intron | 30.0% | |
| !!! | CTTTACTGATTTTGGTACAC+CGG | - | tig0027465:8608-8627 | Msa1434080:CDS | 35.0% |
| GAAACATATCCGATCATTGT+TGG | - | tig0027465:8669-8688 | Msa1434080:CDS | 35.0% | |
| AAGAATACTCAAGGGAATAC+AGG | - | tig0027465:8771-8790 | Msa1434080:CDS | 35.0% | |
| !! | GATTATAGTGCTGGTGATAA+AGG | - | tig0027465:8852-8871 | Msa1434080:CDS | 35.0% |
| ! | GAAGATGATGATGTAGTTGT+TGG | - | tig0027465:9017-9036 | Msa1434080:intron | 35.0% |
| CATTAACTGCTGAAGGAATA+AGG | - | tig0027465:9063-9082 | Msa1434080:intron | 35.0% | |
| !! | CCGGGTTATGTTTTTAAATC+TGG | + | tig0027465:9148-9167 | None:intergenic | 35.0% |
| TCTCATCATGTGTGATTCTT+CGG | - | tig0027465:9384-9403 | Msa1434080:intron | 35.0% | |
| AAATCGCGAAATCAGATAAG+AGG | + | tig0027465:9540-9559 | None:intergenic | 35.0% | |
| TCATTCTGTAGTTTCTGTTG+TGG | - | tig0027465:9576-9595 | Msa1434080:intron | 35.0% | |
| GTAGTTTCTGTTGTGGATTT+AGG | - | tig0027465:9583-9602 | Msa1434080:intron | 35.0% | |
| TGTTGTGGATTTAGGGATTT+AGG | - | tig0027465:9591-9610 | Msa1434080:intron | 35.0% | |
| GTTGTGGATTTAGGGATTTA+GGG | - | tig0027465:9592-9611 | Msa1434080:intron | 35.0% | |
| ! | TTAGGGATTTAGGGATTTTG+TGG | - | tig0027465:9601-9620 | Msa1434080:CDS | 35.0% |
| GGTGAAAATGACAATCTTAG+TGG | - | tig0027465:9860-9879 | Msa1434080:intron | 35.0% | |
| AAATGACAATCTTAGTGGAG+AGG | - | tig0027465:9865-9884 | Msa1434080:intron | 35.0% | |
| AGTAAGTACTCCAATAACAC+AGG | + | tig0027465:9929-9948 | None:intergenic | 35.0% | |
| ! | GTTATTGGAGTACTTACTTC+AGG | - | tig0027465:9931-9950 | Msa1434080:intron | 35.0% |
| CAGCAAAGTGACATACAAAT+CGG | - | tig0027465:10066-10085 | Msa1434080:intron | 35.0% | |
| ATTGTGACAATGTGATTGTG+AGG | - | tig0027465:10245-10264 | Msa1434080:intron | 35.0% | |
| TGAATCTTGTAAGCATGTGA+GGG | + | tig0027465:10399-10418 | None:intergenic | 35.0% | |
| TTGAATCTTGTAAGCATGTG+AGG | + | tig0027465:10400-10419 | None:intergenic | 35.0% | |
| AAGTGTTCAGGGAAGAAAAA+GGG | + | tig0027465:10645-10664 | None:intergenic | 35.0% | |
| ! | AAAGTGTTCAGGGAAGAAAA+AGG | + | tig0027465:10646-10665 | None:intergenic | 35.0% |
| ACATCACACTTACTTGAACT+AGG | + | tig0027465:10789-10808 | None:intergenic | 35.0% | |
| TTAACATGTGATTGTTGGGT+TGG | - | tig0027465:10827-10846 | Msa1434080:CDS | 35.0% | |
| ! | GAAGACTTTTACCAAGTAGA+AGG | - | tig0027465:11000-11019 | Msa1434080:intron | 35.0% |
| AGTTCTTGTAAAAGCCTACT+TGG | + | tig0027465:11032-11051 | None:intergenic | 35.0% | |
| ! | AAGTAGGCTTTTACAAGAAC+TGG | - | tig0027465:11031-11050 | Msa1434080:intron | 35.0% |
| ! | AGTAGGCTTTTACAAGAACT+GGG | - | tig0027465:11032-11051 | Msa1434080:intron | 35.0% |
| GTTTATTAGTGAGGCATATC+TGG | - | tig0027465:11261-11280 | Msa1434080:intron | 35.0% | |
| TAACACGAAAGGCTAGATTT+AGG | + | tig0027465:11345-11364 | None:intergenic | 35.0% | |
| TCTACCATACCTGTCAAATT+CGG | + | tig0027465:11936-11955 | None:intergenic | 35.0% | |
| GATTATCTTATGATCAAGGG+AGG | - | tig0027465:12140-12159 | Msa1434080:CDS | 35.0% | |
| TAAATCGGCCACCTATAAAT+CGG | - | tig0027465:12649-12668 | Msa1434080:CDS | 35.0% | |
| ! | GTATTTTCTGCACTAGTGAA+TGG | - | tig0027465:12715-12734 | Msa1434080:CDS | 35.0% |
| !!! | AGTGTAATGGTTTTGCTGTT+AGG | - | tig0027465:12786-12805 | Msa1434080:intron | 35.0% |
| CTGTTAGGAAGAGTGATATT+AGG | - | tig0027465:12801-12820 | Msa1434080:intron | 35.0% | |
| GATATTAGGCGCAATGTTAA+CGG | - | tig0027465:12815-12834 | Msa1434080:intron | 35.0% | |
| TTAACGGTGAGATTGTAATG+AGG | - | tig0027465:12831-12850 | Msa1434080:intron | 35.0% | |
| ! | CACAACATATCTACCCTTTT+TGG | + | tig0027465:12981-13000 | None:intergenic | 35.0% |
| TGCATTTACACCCTGTTTAT+CGG | - | tig0027465:13050-13069 | Msa1434080:CDS | 35.0% | |
| ! | CGGATATTTTCCGATAAACA+GGG | + | tig0027465:13063-13082 | None:intergenic | 35.0% |
| ! | TCGGATATTTTCCGATAAAC+AGG | + | tig0027465:13064-13083 | None:intergenic | 35.0% |
| TGTTTATCGGAAAATATCCG+AGG | - | tig0027465:13063-13082 | Msa1434080:CDS | 35.0% | |
| AATCTGTGCTTTATCTACCT+CGG | + | tig0027465:13083-13102 | None:intergenic | 35.0% | |
| GTAGATAAAGCACAGATTGA+TGG | - | tig0027465:13085-13104 | Msa1434080:intron | 35.0% | |
| ! | TCATATAATGGGATACATGG+TGG | - | tig0027465:13135-13154 | Msa1434080:intron | 35.0% |
| AGTGGCAGAATATTCACAAA+AGG | + | tig0027465:13308-13327 | None:intergenic | 35.0% | |
| !! | AAATGTCTATTTTGGGCAGA+TGG | - | tig0027465:13343-13362 | Msa1434080:intron | 35.0% |
| !! | AGTTATATTTGGTGCTGCAT+TGG | - | tig0027465:13486-13505 | Msa1434080:intron | 35.0% |
| ! | GACCAGTTTTCTAGATTGTA+TGG | - | tig0027465:13546-13565 | Msa1434080:intron | 35.0% |
| TCCCATACAATCTAGAAAAC+TGG | + | tig0027465:13551-13570 | None:intergenic | 35.0% | |
| !!! | TGCCAAGAATTCAGCTTTTT+TGG | - | tig0027465:13696-13715 | Msa1434080:intron | 35.0% |
| !!! | TGAAATTGAAGAGTTTTGGG+GGG | - | tig0027465:13759-13778 | Msa1434080:intron | 35.0% |
| ATGGAATTGAGAACAATCCA+TGG | - | tig0027465:13797-13816 | Msa1434080:intron | 35.0% | |
| TGGAATTGAGAACAATCCAT+GGG | - | tig0027465:13798-13817 | Msa1434080:intron | 35.0% | |
| !!! | TCATATGTTTTGGTAACCCA+TGG | + | tig0027465:13817-13836 | None:intergenic | 35.0% |
| !! | ATTTCTGCACAATTTTGACG+AGG | - | tig0027465:13966-13985 | Msa1434080:intron | 35.0% |
| GTGAAGGAAAAAGAAGTGAA+TGG | - | tig0027465:14159-14178 | Msa1434080:intron | 35.0% | |
| GTTGACAAAATATCTTGAGG+AGG | - | tig0027465:14200-14219 | Msa1434080:intron | 35.0% | |
| !! | CAAACATTCTGGAATGTGTT+CGG | + | tig0027465:14338-14357 | None:intergenic | 35.0% |
| CGCAACAAAATCAAACATTC+TGG | + | tig0027465:14349-14368 | None:intergenic | 35.0% | |
| !! | GAAGATTGGTTTCTTGAATG+TGG | - | tig0027465:14384-14403 | Msa1434080:intron | 35.0% |
| ! | TTCTTGAATGTGGACTATTG+TGG | - | tig0027465:14394-14413 | Msa1434080:intron | 35.0% |
| ! | TCTTGAATGTGGACTATTGT+GGG | - | tig0027465:14395-14414 | Msa1434080:intron | 35.0% |
| ! | GGAAGTAGATTCTAAGTTGA+TGG | - | tig0027465:14417-14436 | Msa1434080:intron | 35.0% |
| TGGATGACATACAAAAGCTT+CGG | - | tig0027465:14527-14546 | Msa1434080:intron | 35.0% | |
| CAGTAACAATTGGAACTTCA+GGG | + | tig0027465:14567-14586 | None:intergenic | 35.0% | |
| GTTGAGTTTCCAGTAACAAT+TGG | + | tig0027465:14577-14596 | None:intergenic | 35.0% | |
| TGTTACTGGAAACTCAACAA+TGG | - | tig0027465:14579-14598 | Msa1434080:intron | 35.0% | |
| ! | GGTGCCTTTTTATTCTTCTT+TGG | + | tig0027465:14646-14665 | None:intergenic | 35.0% |
| ! | CAGCACATGTCTTTTTCTTT+GGG | + | tig0027465:15014-15033 | None:intergenic | 35.0% |
| ! | CAGCACATGTCTTTTTCTTT+GGG | + | tig0027465:15014-15033 | None:intergenic | 35.0% |
| CGGTGTACCAAAATCAGTAA+AGG | + | tig0027465:8610-8629 | None:intergenic | 40.0% | |
| GTAGAACCGTAATCATGTTC+CGG | + | tig0027465:8630-8649 | None:intergenic | 40.0% | |
| GGAACATGATTACGGTTCTA+CGG | - | tig0027465:8629-8648 | Msa1434080:CDS | 40.0% | |
| ! | GATGATGATGATGTGAGTCA+TGG | - | tig0027465:8738-8757 | Msa1434080:CDS | 40.0% |
| GATGAGCGATATGAAGAAAC+TGG | - | tig0027465:8795-8814 | Msa1434080:CDS | 40.0% | |
| GGAGACAATGAAAGTGATGA+TGG | - | tig0027465:8816-8835 | Msa1434080:CDS | 40.0% | |
| !! | GACAATGAAAGTGATGATGG+TGG | - | tig0027465:8819-8838 | Msa1434080:CDS | 40.0% |
| TGTTCTGGTGATTATAGTGC+TGG | - | tig0027465:8843-8862 | Msa1434080:CDS | 40.0% | |
| GGTGATAAAGGTGAAGATGA+TGG | - | tig0027465:8864-8883 | Msa1434080:CDS | 40.0% | |
| AGTGAATGCGATGAAAGTCA+AGG | - | tig0027465:8888-8907 | Msa1434080:intron | 40.0% | |
| GATGAAAGTCAAGGTGATGA+AGG | - | tig0027465:8897-8916 | Msa1434080:intron | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | tig0027465:8948-8967 | Msa1434080:intron | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | tig0027465:8948-8967 | Msa1434080:intron | 40.0% | |
| ! | TGATGATGTAGTTGTTGGTG+AGG | - | tig0027465:9022-9041 | Msa1434080:intron | 40.0% |
| ! | TGTAGTTGTTGGTGAGGAAA+TGG | - | tig0027465:9028-9047 | Msa1434080:intron | 40.0% |
| ! | TTGTTGGTGAGGAAATGGTA+AGG | - | tig0027465:9033-9052 | Msa1434080:intron | 40.0% |
| AAACACTGAACTCTCTCTTC+AGG | - | tig0027465:9259-9278 | Msa1434080:intron | 40.0% | |
| AGAACGCAGTGAAGAAAGTT+TGG | + | tig0027465:9313-9332 | None:intergenic | 40.0% | |
| ACACATGATGAGAATATGGG+AGG | + | tig0027465:9377-9396 | None:intergenic | 40.0% | |
| CAAATCGCATACCCTAGATT+TGG | + | tig0027465:9447-9466 | None:intergenic | 40.0% | |
| ! | TTAGGGATTTTGTGGATCTC+AGG | - | tig0027465:9609-9628 | Msa1434080:CDS | 40.0% |
| ! | TTGGAGTACTTACTTCAGGT+TGG | - | tig0027465:9935-9954 | Msa1434080:intron | 40.0% |
| GTTGGTCACAGCTTCAAAAT+GGG | + | tig0027465:10277-10296 | None:intergenic | 40.0% | |
| AGTTGGTCACAGCTTCAAAA+TGG | + | tig0027465:10278-10297 | None:intergenic | 40.0% | |
| ACAAAATGACGCTCGAATCT+TGG | + | tig0027465:10507-10526 | None:intergenic | 40.0% | |
| TATCACCTAGTAGCATGGTT+TGG | - | tig0027465:10606-10625 | Msa1434080:CDS | 40.0% | |
| ! | TTTGGTAGGATCGTCTTTTG+GGG | + | tig0027465:10697-10716 | None:intergenic | 40.0% |
| ! | GTTTGGTAGGATCGTCTTTT+GGG | + | tig0027465:10698-10717 | None:intergenic | 40.0% |
| !! | CTTTTGTGGGTTACAAGTCT+GGG | - | tig0027465:10733-10752 | Msa1434080:CDS | 40.0% |
| TGGGATGACCCATATAGTTA+GGG | - | tig0027465:10752-10771 | Msa1434080:intron | 40.0% | |
| TCATAAGAAAGAGACATGCG+AGG | - | tig0027465:10922-10941 | Msa1434080:CDS | 40.0% | |
| ACTCCAACAACAACAATTGG+GGG | + | tig0027465:10968-10987 | None:intergenic | 40.0% | |
| CACTCCAACAACAACAATTG+GGG | + | tig0027465:10969-10988 | None:intergenic | 40.0% | |
| CCACTCCAACAACAACAATT+GGG | + | tig0027465:10970-10989 | None:intergenic | 40.0% | |
| ACCACTCCAACAACAACAAT+TGG | + | tig0027465:10971-10990 | None:intergenic | 40.0% | |
| ! | ATTGTTGTTGTTGGAGTGGT+AGG | - | tig0027465:10971-10990 | Msa1434080:intron | 40.0% |
| CTTGGTAAAAGCCTTCTACT+TGG | + | tig0027465:11014-11033 | None:intergenic | 40.0% | |
| ! | GTAGAAGGCTTTTACCAAGT+AGG | - | tig0027465:11015-11034 | Msa1434080:intron | 40.0% |
| TCTTGTTCTTGCTCATACTC+AGG | - | tig0027465:11167-11186 | Msa1434080:intron | 40.0% | |
| ACTGAAGGTAAGGAAGTTGA+AGG | - | tig0027465:11529-11548 | Msa1434080:intron | 40.0% | |
| CTGAAGGTAAGGAAGTTGAA+GGG | - | tig0027465:11530-11549 | Msa1434080:intron | 40.0% | |
| AGCTCATTTGATGGAAATCC+AGG | - | tig0027465:11568-11587 | Msa1434080:CDS | 40.0% | |
| TTGATGGAAATCCAGGTGAA+TGG | - | tig0027465:11575-11594 | Msa1434080:CDS | 40.0% | |
| TTTGGAAAACTGCATCCACT+GGG | + | tig0027465:11655-11674 | None:intergenic | 40.0% | |
| !! | TTTTGGAAAACTGCATCCAC+TGG | + | tig0027465:11656-11675 | None:intergenic | 40.0% |
| !! | ATGAAGGTGTTGTAACTCGT+TGG | - | tig0027465:11720-11739 | Msa1434080:intron | 40.0% |
| !! | TGAAGGTGTTGTAACTCGTT+GGG | - | tig0027465:11721-11740 | Msa1434080:intron | 40.0% |
| CTTAGGAAGGTTGCTTGTAT+TGG | - | tig0027465:11779-11798 | Msa1434080:intron | 40.0% | |
| TGGCAACTGTGAAAGAAACA+CGG | + | tig0027465:11820-11839 | None:intergenic | 40.0% | |
| TGTTTCTTTCACAGTTGCCA+GGG | - | tig0027465:11820-11839 | Msa1434080:intron | 40.0% | |
| GATATCATCATCGTATCGAG+CGG | - | tig0027465:11855-11874 | Msa1434080:CDS | 40.0% | |
| GCGGAATAAGAAGATCTACA+AGG | - | tig0027465:11874-11893 | Msa1434080:CDS | 40.0% | |
| ! | ATACCTGTCAAATTCGGTGA+TGG | + | tig0027465:11930-11949 | None:intergenic | 40.0% |
| ATCACCGAATTTGACAGGTA+TGG | - | tig0027465:11929-11948 | Msa1434080:CDS | 40.0% | |
| TGAGAAGGATATTACTCCGA+TGG | - | tig0027465:12085-12104 | Msa1434080:intron | 40.0% | |
| GAGAAGGATATTACTCCGAT+GGG | - | tig0027465:12086-12105 | Msa1434080:intron | 40.0% | |
| GATTCACCACACCATAATGA+GGG | + | tig0027465:12118-12137 | None:intergenic | 40.0% | |
| TGATTCACCACACCATAATG+AGG | + | tig0027465:12119-12138 | None:intergenic | 40.0% | |
| GTTTACATGACGAGACATTG+TGG | - | tig0027465:12303-12322 | Msa1434080:intron | 40.0% | |
| GTGAACATCCGATTTATAGG+TGG | + | tig0027465:12660-12679 | None:intergenic | 40.0% | |
| CAGTATGTATGCAACAAGCA+GGG | - | tig0027465:12854-12873 | Msa1434080:intron | 40.0% | |
| AGTATGTATGCAACAAGCAG+GGG | - | tig0027465:12855-12874 | Msa1434080:intron | 40.0% | |
| !! | TTTTGGGTCTGTAGTGAACA+CGG | + | tig0027465:12964-12983 | None:intergenic | 40.0% |
| TGTTCACTACAGACCCAAAA+AGG | - | tig0027465:12964-12983 | Msa1434080:intron | 40.0% | |
| GTTCACTACAGACCCAAAAA+GGG | - | tig0027465:12965-12984 | Msa1434080:intron | 40.0% | |
| !! | TGTAAATGCACAGCATTGGT+TGG | + | tig0027465:13040-13059 | None:intergenic | 40.0% |
| ! | ATTGATGGTCTTCAGTCACA+CGG | - | tig0027465:13100-13119 | Msa1434080:intron | 40.0% |
| TTTCTTAGTGAACCCAACAC+CGG | + | tig0027465:13179-13198 | None:intergenic | 40.0% | |
| ! | ATGCGTGCTGTTATTAAGGA+TGG | - | tig0027465:13226-13245 | Msa1434080:intron | 40.0% |
| TTTCAAACGTTCGTCATCAG+TGG | + | tig0027465:13326-13345 | None:intergenic | 40.0% | |
| !! | TTATTTCTGCTTTGGCGATG+TGG | - | tig0027465:13381-13400 | Msa1434080:intron | 40.0% |
| GAACAAATACCACTATCCGT+TGG | - | tig0027465:13429-13448 | Msa1434080:intron | 40.0% | |
| ACAAAATCACCAACGGATAG+TGG | + | tig0027465:13441-13460 | None:intergenic | 40.0% | |
| CAGCAAGACAAAATCACCAA+CGG | + | tig0027465:13448-13467 | None:intergenic | 40.0% | |
| ! | CCATCTGTTACAACTGCTTT+TGG | + | tig0027465:13583-13602 | None:intergenic | 40.0% |
| CCAAAAGCAGTTGTAACAGA+TGG | - | tig0027465:13580-13599 | Msa1434080:intron | 40.0% | |
| GCATCTGAACAAGAATGCTA+TGG | - | tig0027465:13669-13688 | Msa1434080:intron | 40.0% | |
| !! | AATTTTGACGAGGCAATGAG+AGG | - | tig0027465:13976-13995 | Msa1434080:intron | 40.0% |
| TGCAGGAAATTTGAATCTCG+AGG | - | tig0027465:14268-14287 | Msa1434080:intron | 40.0% | |
| GCAGGAAATTTGAATCTCGA+GGG | - | tig0027465:14269-14288 | Msa1434080:intron | 40.0% | |
| CAGGAAATTTGAATCTCGAG+GGG | - | tig0027465:14270-14289 | Msa1434080:intron | 40.0% | |
| TTTGTTGCGTTGGACGAAAA+AGG | - | tig0027465:14360-14379 | Msa1434080:intron | 40.0% | |
| ! | CTTGAATGTGGACTATTGTG+GGG | - | tig0027465:14396-14415 | Msa1434080:intron | 40.0% |
| TTGATGGAGATTGCTCGATA+TGG | - | tig0027465:14433-14452 | Msa1434080:intron | 40.0% | |
| ! | AGCATACAAGCTACCCTTTT+TGG | + | tig0027465:14500-14519 | None:intergenic | 40.0% |
| GGATGACATACAAAAGCTTC+GGG | - | tig0027465:14528-14547 | Msa1434080:intron | 40.0% | |
| CCAGTAACAATTGGAACTTC+AGG | + | tig0027465:14568-14587 | None:intergenic | 40.0% | |
| CCTGAAGTTCCAATTGTTAC+TGG | - | tig0027465:14565-14584 | Msa1434080:intron | 40.0% | |
| AAAAAGACATTCAGTGTCCG+CGG | + | tig0027465:14728-14747 | None:intergenic | 40.0% | |
| ! | GCAGCACATGTCTTTTTCTT+TGG | + | tig0027465:15015-15034 | None:intergenic | 40.0% |
| ! | GCAGCACATGTCTTTTTCTT+TGG | + | tig0027465:15015-15034 | None:intergenic | 40.0% |
| GGTACACCGGAACATGATTA+CGG | - | tig0027465:8621-8640 | Msa1434080:CDS | 45.0% | |
| TGATTACGGTTCTACGGATG+TGG | - | tig0027465:8635-8654 | Msa1434080:CDS | 45.0% | |
| TATCCGATCATTGTTGGGAG+TGG | - | tig0027465:8675-8694 | Msa1434080:CDS | 45.0% | |
| !! | AGTGATGATGGTGGTTGTTC+TGG | - | tig0027465:8828-8847 | Msa1434080:CDS | 45.0% |
| AGTCAAGGTGATGAAGGTGA+AGG | - | tig0027465:8903-8922 | Msa1434080:intron | 45.0% | |
| GGTGAAGGTGATGAAAGTGA+AGG | - | tig0027465:8918-8937 | Msa1434080:intron | 45.0% | |
| AGTGAAGGTCATGCTAGTGA+AGG | - | tig0027465:8933-8952 | Msa1434080:intron | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | - | tig0027465:8924-8943 | Msa1434080:intron | 45.0% | |
| ! | AGTGAAGGTCATGGTAGTGA+AGG | - | tig0027465:8978-8997 | Msa1434080:intron | 45.0% |
| CATGATGAGAATATGGGAGG+TGG | + | tig0027465:9374-9393 | None:intergenic | 45.0% | |
| TGACAATCTTAGTGGAGAGG+AGG | - | tig0027465:9868-9887 | Msa1434080:intron | 45.0% | |
| GACAATCTTAGTGGAGAGGA+GGG | - | tig0027465:9869-9888 | Msa1434080:intron | 45.0% | |
| AGCGAATGAGCCTGTGTTAT+TGG | - | tig0027465:9916-9935 | Msa1434080:intron | 45.0% | |
| ! | CGAATCTTGGAAGCATGTGA+AGG | + | tig0027465:10494-10513 | None:intergenic | 45.0% |
| AGCAACCAAACCATGCTACT+AGG | + | tig0027465:10614-10633 | None:intergenic | 45.0% | |
| !! | GGTTTGGTAGGATCGTCTTT+TGG | + | tig0027465:10699-10718 | None:intergenic | 45.0% |
| ACAAAAGGAGTCAACCTGCA+TGG | + | tig0027465:10720-10739 | None:intergenic | 45.0% | |
| !! | ATGCAGGTTGACTCCTTTTG+TGG | - | tig0027465:10719-10738 | Msa1434080:CDS | 45.0% |
| !! | TGCAGGTTGACTCCTTTTGT+GGG | - | tig0027465:10720-10739 | Msa1434080:CDS | 45.0% |
| CCAGACTTGTAACCCACAAA+AGG | + | tig0027465:10735-10754 | None:intergenic | 45.0% | |
| !! | CCTTTTGTGGGTTACAAGTC+TGG | - | tig0027465:10732-10751 | Msa1434080:CDS | 45.0% |
| CTGGGATGACCCATATAGTT+AGG | - | tig0027465:10751-10770 | Msa1434080:intron | 45.0% | |
| GATGACCCATATAGTTAGGG+AGG | - | tig0027465:10755-10774 | Msa1434080:intron | 45.0% | |
| CTCCACCTCCCTAACTATAT+GGG | + | tig0027465:10763-10782 | None:intergenic | 45.0% | |
| TCTCCACCTCCCTAACTATA+TGG | + | tig0027465:10764-10783 | None:intergenic | 45.0% | |
| ! | ACTCCCCCAATTGTTGTTGT+TGG | - | tig0027465:10962-10981 | Msa1434080:intron | 45.0% |
| ! | CCCAATTGTTGTTGTTGGAG+TGG | - | tig0027465:10967-10986 | Msa1434080:intron | 45.0% |
| CTGGGCCAAATCAAAGAAGA+AGG | - | tig0027465:11050-11069 | Msa1434080:intron | 45.0% | |
| ATGGAAATCCAGGTGAATGG+TGG | - | tig0027465:11578-11597 | Msa1434080:CDS | 45.0% | |
| TTACTGTTCCACCATTCACC+TGG | + | tig0027465:11589-11608 | None:intergenic | 45.0% | |
| TGTATGCATAGTCCACCTTC+TGG | + | tig0027465:11613-11632 | None:intergenic | 45.0% | |
| CTTCGAAAAGCAAATCCCAG+TGG | - | tig0027465:11637-11656 | Msa1434080:CDS | 45.0% | |
| !! | GAAGGTGTTGTAACTCGTTG+GGG | - | tig0027465:11722-11741 | Msa1434080:intron | 45.0% |
| GAAAGACTCACAGAGGTCTT+AGG | - | tig0027465:11762-11781 | Msa1434080:intron | 45.0% | |
| GGCAACTGTGAAAGAAACAC+GGG | + | tig0027465:11819-11838 | None:intergenic | 45.0% | |
| GTGTTTCTTTCACAGTTGCC+AGG | - | tig0027465:11819-11838 | Msa1434080:intron | 45.0% | |
| TGATGGCTGTATGTGACTCT+TGG | + | tig0027465:11913-11932 | None:intergenic | 45.0% | |
| AAGGATATTACTCCGATGGG+TGG | - | tig0027465:12089-12108 | Msa1434080:intron | 45.0% | |
| TAATGAGGGAATCCACCCAT+CGG | + | tig0027465:12104-12123 | None:intergenic | 45.0% | |
| ! | ATGGGTGGATTCCCTCATTA+TGG | - | tig0027465:12104-12123 | Msa1434080:intron | 45.0% |
| TGGATTCCCTCATTATGGTG+TGG | - | tig0027465:12109-12128 | Msa1434080:CDS | 45.0% | |
| CGGGTGAACATCCGATTTAT+AGG | + | tig0027465:12663-12682 | None:intergenic | 45.0% | |
| GCAGTATGTATGCAACAAGC+AGG | - | tig0027465:12853-12872 | Msa1434080:intron | 45.0% | |
| ! | CATTGGTTGGAGTAGGTTCA+TGG | + | tig0027465:13027-13046 | None:intergenic | 45.0% |
| AGGGTGTAAATGCACAGCAT+TGG | + | tig0027465:13044-13063 | None:intergenic | 45.0% | |
| TTCTTAGTGAACCCAACACC+GGG | + | tig0027465:13178-13197 | None:intergenic | 45.0% | |
| AAAGGAATGGGGATCAGTTG+AGG | + | tig0027465:13290-13309 | None:intergenic | 45.0% | |
| !! | ATTTGGTGCTGCATTGGTGA+TGG | - | tig0027465:13492-13511 | Msa1434080:intron | 45.0% |
| GCAGTTGTAACAGATGGTGA+CGG | - | tig0027465:13586-13605 | Msa1434080:intron | 45.0% | |
| !! | AGATGGTGACGGTTCTATGA+GGG | - | tig0027465:13597-13616 | Msa1434080:intron | 45.0% |
| TTCTATGAGGGAGGCGATAA+AGG | - | tig0027465:13609-13628 | Msa1434080:intron | 45.0% | |
| TACGTGCGTGACGATTTCTT+TGG | - | tig0027465:13862-13881 | Msa1434080:intron | 45.0% | |
| CGAGGCTGCTGAAATCTATA+CGG | - | tig0027465:14083-14102 | Msa1434080:intron | 45.0% | |
| !! | GATCTCAGCAGTGTTTTTGC+AGG | - | tig0027465:14251-14270 | Msa1434080:intron | 45.0% |
| TGGACGAAAAAGGCGAAGAT+TGG | - | tig0027465:14370-14389 | Msa1434080:intron | 45.0% | |
| !! | TTGCAGGGAAGTGTCCAAAA+AGG | - | tig0027465:14483-14502 | Msa1434080:intron | 45.0% |
| !! | TGCAGGGAAGTGTCCAAAAA+GGG | - | tig0027465:14484-14503 | Msa1434080:intron | 45.0% |
| ! | TAGCTTGTATGCTGATGTGC+TGG | - | tig0027465:14507-14526 | Msa1434080:intron | 45.0% |
| TGATGCCAGAAAATGTTCCG+CGG | - | tig0027465:14708-14727 | Msa1434080:intron | 45.0% | |
| CAAAGGGAGGCAAATCAAAG+AGG | - | tig0027465:14794-14813 | Msa1434080:CDS | 45.0% | |
| AGAAAGATGCTCAGTGCTTG+CGG | + | tig0027465:14830-14849 | None:intergenic | 45.0% | |
| !! | CAAGCACTGAGCATCTTTCT+GGG | - | tig0027465:14830-14849 | Msa1434080:CDS | 45.0% |
| CATGCTAGCCAAAAAGACGT+GGG | - | tig0027465:15069-15088 | Msa1434080:CDS | 45.0% | |
| TAGCTAGCATGCTGAGACAT+GGG | + | tig0027465:15162-15181 | None:intergenic | 45.0% | |
| TTAGCTAGCATGCTGAGACA+TGG | + | tig0027465:15163-15182 | None:intergenic | 45.0% | |
| !!! | TTTTTTAATTTTTAGATAAT+TGG | - | tig0027465:9792-9811 | Msa1434080:intron | 5.0% |
| !!! | TAAAATCTTTTAATTTAAAT+CGG | + | tig0027465:12554-12573 | None:intergenic | 5.0% |
| CCACCACTCCCAACAATGAT+CGG | + | tig0027465:8681-8700 | None:intergenic | 50.0% | |
| !!! | AGAGGAGGGTTTTGTTGCCA+TGG | - | tig0027465:9883-9902 | Msa1434080:intron | 50.0% |
| !!! | GGTTTTGTTGCCATGGTTGC+AGG | - | tig0027465:9890-9909 | Msa1434080:intron | 50.0% |
| ATTCGCTACACCTGCAACCA+TGG | + | tig0027465:9903-9922 | None:intergenic | 50.0% | |
| ACGATCCTACCAAACCATGC+AGG | - | tig0027465:10703-10722 | Msa1434080:CDS | 50.0% | |
| !! | GTCAACCTGCATGGTTTGGT+AGG | + | tig0027465:10711-10730 | None:intergenic | 50.0% |
| AGGAGTCAACCTGCATGGTT+TGG | + | tig0027465:10715-10734 | None:intergenic | 50.0% | |
| GACCCATATAGTTAGGGAGG+TGG | - | tig0027465:10758-10777 | Msa1434080:intron | 50.0% | |
| TGGTGGAACAGTAAGCCAGA+AGG | - | tig0027465:11595-11614 | Msa1434080:CDS | 50.0% | |
| TGGAACAGTAAGCCAGAAGG+TGG | - | tig0027465:11598-11617 | Msa1434080:CDS | 50.0% | |
| CTCTGTGAGTCTTTCGTGGA+AGG | + | tig0027465:11757-11776 | None:intergenic | 50.0% | |
| CTTCCACGAAAGACTCACAG+AGG | - | tig0027465:11755-11774 | Msa1434080:intron | 50.0% | |
| AGACCTCTGTGAGTCTTTCG+TGG | + | tig0027465:11761-11780 | None:intergenic | 50.0% | |
| GACTCACAGAGGTCTTAGGA+AGG | - | tig0027465:11766-11785 | Msa1434080:intron | 50.0% | |
| CTGTGAAAGAAACACGGGCA+GGG | + | tig0027465:11814-11833 | None:intergenic | 50.0% | |
| ACTGTGAAAGAAACACGGGC+AGG | + | tig0027465:11815-11834 | None:intergenic | 50.0% | |
| ATATCCATTCTGACCAGCCC+TGG | + | tig0027465:11840-11859 | None:intergenic | 50.0% | |
| GATCTACAAGGTTGGCAAGC+AGG | - | tig0027465:11886-11905 | Msa1434080:CDS | 50.0% | |
| CAGCCATCACCGAATTTGAC+AGG | - | tig0027465:11924-11943 | Msa1434080:CDS | 50.0% | |
| TCACGCTCTTTGCTAACTGC+AGG | - | tig0027465:12060-12079 | Msa1434080:intron | 50.0% | |
| TGCTAACTGCAGGACTGAGA+AGG | - | tig0027465:12070-12089 | Msa1434080:intron | 50.0% | |
| ATGATCAAGGGAGGCTGTGT+TGG | - | tig0027465:12149-12168 | Msa1434080:CDS | 50.0% | |
| GCTGTGTTGGACCAAAGAAG+CGG | - | tig0027465:12162-12181 | Msa1434080:CDS | 50.0% | |
| CTGTGTTGGACCAAAGAAGC+GGG | - | tig0027465:12163-12182 | Msa1434080:CDS | 50.0% | |
| AGAGTGACAACCCGCTTCTT+TGG | + | tig0027465:12176-12195 | None:intergenic | 50.0% | |
| ! | CTCGTACAAAGTGTCCAGCT+AGG | - | tig0027465:12936-12955 | Msa1434080:intron | 50.0% |
| !! | TGCACAGCATTGGTTGGAGT+AGG | + | tig0027465:13034-13053 | None:intergenic | 50.0% |
| GGATACATGGTGGCTCAGAA+GGG | - | tig0027465:13145-13164 | Msa1434080:intron | 50.0% | |
| !! | CAGATGGTGACGGTTCTATG+AGG | - | tig0027465:13596-13615 | Msa1434080:intron | 50.0% |
| TATGAGGGAGGCGATAAAGG+CGG | - | tig0027465:13612-13631 | Msa1434080:intron | 50.0% | |
| CATAGACGATGACGCGTACT+TGG | + | tig0027465:13643-13662 | None:intergenic | 50.0% | |
| !!! | TGAAGAGTTTTGGGGGGACT+TGG | - | tig0027465:13765-13784 | Msa1434080:intron | 50.0% |
| GTGCGTGACGATTTCTTTGG+TGG | - | tig0027465:13865-13884 | Msa1434080:intron | 50.0% | |
| CAGATGAGTTGTCAGCACAG+GGG | + | tig0027465:14049-14068 | None:intergenic | 50.0% | |
| GCAGATGAGTTGTCAGCACA+GGG | + | tig0027465:14050-14069 | None:intergenic | 50.0% | |
| ! | AGGTGTTGCACTGAGTGTGA+AGG | - | tig0027465:14143-14162 | Msa1434080:intron | 50.0% |
| CTGGCAATGGATCACGTATG+TGG | + | tig0027465:14606-14625 | None:intergenic | 50.0% | |
| CCTTTGCACTTCACTGGCAA+TGG | + | tig0027465:14619-14638 | None:intergenic | 50.0% | |
| CCATTGCCAGTGAAGTGCAA+AGG | - | tig0027465:14616-14635 | Msa1434080:intron | 50.0% | |
| ! | AGTGTCCGCGGAACATTTTC+TGG | + | tig0027465:14716-14735 | None:intergenic | 50.0% |
| TCCCACGTCTCTTTGGCTAT+CGG | + | tig0027465:14767-14786 | None:intergenic | 50.0% | |
| ATCCTTCTCCCACGTCTCTT+TGG | + | tig0027465:14774-14793 | None:intergenic | 50.0% | |
| AGACGTGGGAGAAGGATCAA+AGG | - | tig0027465:14777-14796 | Msa1434080:CDS | 50.0% | |
| GACGTGGGAGAAGGATCAAA+GGG | - | tig0027465:14778-14797 | Msa1434080:CDS | 50.0% | |
| !! | GCAAGCACTGAGCATCTTTC+TGG | - | tig0027465:14829-14848 | Msa1434080:CDS | 50.0% |
| TGGCTAGCATGCTGAGACAT+TGG | + | tig0027465:14856-14875 | None:intergenic | 50.0% | |
| CATGCTAGCCAGAAAGACGT+GGG | - | tig0027465:14865-14884 | Msa1434080:CDS | 50.0% | |
| ATCCTTCTCCCACGTCTTTC+TGG | + | tig0027465:14876-14895 | None:intergenic | 50.0% | |
| AGACGTGGGAGAAGGATCAA+AGG | - | tig0027465:14777-14796 | Msa1434080:CDS | 50.0% | |
| GACGTGGGAGAAGGATCAAA+GGG | - | tig0027465:14778-14797 | Msa1434080:CDS | 50.0% | |
| TGGCTAGCATGCTGAGACAT+GGG | + | tig0027465:14856-14875 | None:intergenic | 50.0% | |
| CATGCTAGCCAGAAAGACGT+GGG | - | tig0027465:14865-14884 | Msa1434080:CDS | 50.0% | |
| TGGCTAGCATGCTGAGACAT+GGG | + | tig0027465:14856-14875 | None:intergenic | 50.0% | |
| TTGGCTAGCATGCTGAGACA+TGG | + | tig0027465:15061-15080 | None:intergenic | 50.0% | |
| GCATGCTAGCCAAAAAGACG+TGG | - | tig0027465:15068-15087 | Msa1434080:CDS | 50.0% | |
| ! | ATCCTCCTCCCACGTCTTTT+TGG | + | tig0027465:15080-15099 | None:intergenic | 50.0% |
| CCGATCATTGTTGGGAGTGG+TGG | - | tig0027465:8678-8697 | Msa1434080:CDS | 55.0% | |
| GGTGGAATCGAAGCAAGCTG+CGG | + | tig0027465:9356-9375 | None:intergenic | 55.0% | |
| TGGGGAAGCTTTCACTGCAG+AGG | + | tig0027465:10679-10698 | None:intergenic | 55.0% | |
| TCTTTCACAGTTGCCAGGGC+TGG | - | tig0027465:11824-11843 | Msa1434080:intron | 55.0% | |
| TAGTGAACACGGAGCCTAGC+TGG | + | tig0027465:12953-12972 | None:intergenic | 55.0% | |
| GGGATACATGGTGGCTCAGA+AGG | - | tig0027465:13144-13163 | Msa1434080:intron | 55.0% | |
| TACATGGTGGCTCAGAAGGG+TGG | - | tig0027465:13148-13167 | Msa1434080:intron | 55.0% | |
| GCTCAGAAGGGTGGATATCC+CGG | - | tig0027465:13157-13176 | Msa1434080:intron | 55.0% | |
| AAGGGTGGATATCCCGGTGT+TGG | - | tig0027465:13163-13182 | Msa1434080:intron | 55.0% | |
| AGGGTGGATATCCCGGTGTT+GGG | - | tig0027465:13164-13183 | Msa1434080:intron | 55.0% | |
| !! | TGGTGACGGTTCTATGAGGG+AGG | - | tig0027465:13600-13619 | Msa1434080:intron | 55.0% |
| !!! | AGTTTTGGGGGGACTTGGTG+AGG | - | tig0027465:13770-13789 | Msa1434080:intron | 55.0% |
| !!! | GTTTTGGGGGGACTTGGTGA+GGG | - | tig0027465:13771-13790 | Msa1434080:intron | 55.0% |
| !! | GGGGACTTGGTGAGGGAAAA+TGG | - | tig0027465:13778-13797 | Msa1434080:intron | 55.0% |
| CAGCACAGGGGATGAAAACC+TGG | + | tig0027465:14037-14056 | None:intergenic | 55.0% | |
| CGCAGATGAGTTGTCAGCAC+AGG | + | tig0027465:14051-14070 | None:intergenic | 55.0% | |
| TCTGCGTTGTCTTGAACGCG+AGG | - | tig0027465:14065-14084 | Msa1434080:intron | 55.0% | |
| ! | GGAGCACCTTTGCACTTCAC+TGG | + | tig0027465:14625-14644 | None:intergenic | 55.0% |
| TGGCTATCGGGCTGAGACAT+GGG | + | tig0027465:14754-14773 | None:intergenic | 55.0% | |
| TTGGCTATCGGGCTGAGACA+TGG | + | tig0027465:14755-14774 | None:intergenic | 55.0% | |
| CCCACGTCTCTTTGGCTATC+GGG | + | tig0027465:14766-14785 | None:intergenic | 55.0% | |
| CCCGATAGCCAAAGAGACGT+GGG | - | tig0027465:14763-14782 | Msa1434080:CDS | 55.0% | |
| AGCCAAAGAGACGTGGGAGA+AGG | - | tig0027465:14769-14788 | Msa1434080:CDS | 55.0% | |
| GTGGGAGAAGGATCAAAGGG+AGG | - | tig0027465:14781-14800 | Msa1434080:CDS | 55.0% | |
| GCATGCTAGCCAGAAAGACG+TGG | - | tig0027465:14864-14883 | Msa1434080:CDS | 55.0% | |
| AGCCAGAAAGACGTGGGAGA+AGG | - | tig0027465:14871-14890 | Msa1434080:CDS | 55.0% | |
| CTGGCTAGCATGCTGAGACA+TGG | + | tig0027465:14857-14876 | None:intergenic | 55.0% | |
| GCATGCTAGCCAGAAAGACG+TGG | - | tig0027465:14864-14883 | Msa1434080:CDS | 55.0% | |
| ATCCTGCTCCCACGTCTTTC+TGG | + | tig0027465:14978-14997 | None:intergenic | 55.0% | |
| AGACGTGGGAGCAGGATCAA+AGG | - | tig0027465:14981-15000 | Msa1434080:intron | 55.0% | |
| GACGTGGGAGCAGGATCAAA+GGG | - | tig0027465:14982-15001 | Msa1434080:intron | 55.0% | |
| GCTAGCCAAAAAGACGTGGG+AGG | - | tig0027465:15072-15091 | Msa1434080:CDS | 55.0% | |
| AGCCAAAAAGACGTGGGAGG+AGG | - | tig0027465:15075-15094 | Msa1434080:CDS | 55.0% | |
| AGACGTGGGAGGAGGATCAA+AGG | - | tig0027465:15083-15102 | Msa1434080:CDS | 55.0% | |
| GACGTGGGAGGAGGATCAAA+GGG | - | tig0027465:15084-15103 | Msa1434080:CDS | 55.0% | |
| AATCGAAGCAAGCTGCGGCG+CGG | + | tig0027465:9351-9370 | None:intergenic | 60.0% | |
| !! | GTTGCCAGGGCTGGTCAGAA+TGG | - | tig0027465:11833-11852 | Msa1434080:CDS | 60.0% |
| GCCCGATAGCCAAAGAGACG+TGG | - | tig0027465:14762-14781 | Msa1434080:CDS | 60.0% | |
| AGCCAGAAAGACGTGGGAGC+AGG | - | tig0027465:14973-14992 | Msa1434080:intron | 60.0% | |
| GTGGGAGCAGGATCAAAGGG+AGG | - | tig0027465:14985-15004 | Msa1434080:intron | 60.0% | |
| GTGGGAGGAGGATCAAAGGG+AGG | - | tig0027465:15087-15106 | Msa1434080:CDS | 60.0% | |
| AAGCAAGCTGCGGCGCGGCT+TGG | + | tig0027465:9346-9365 | None:intergenic | 70.0% | |
| ! | CAAGCTGCGGCGCGGCTTGG+TGG | + | tig0027465:9343-9362 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027465 | gene | 8588 | 15182 | 8588 | ID=Msa1434080;Name=Msa1434080 |
| tig0027465 | mRNA | 8588 | 15182 | 8588 | ID=Msa1434080-mRNA-1;Parent=Msa1434080;Name=Msa1434080-mRNA-1;_AED=0.26;_eAED=0.31;_QI=0|0|0|0.90|0.4|0.45|11|0|684 |
| tig0027465 | exon | 15011 | 15182 | 15011 | ID=Msa1434080-mRNA-1:exon:9001;Parent=Msa1434080-mRNA-1 |
| tig0027465 | exon | 14732 | 14977 | 14732 | ID=Msa1434080-mRNA-1:exon:9000;Parent=Msa1434080-mRNA-1 |
| tig0027465 | exon | 12975 | 13085 | 12975 | ID=Msa1434080-mRNA-1:exon:8999;Parent=Msa1434080-mRNA-1 |
| tig0027465 | exon | 12582 | 12766 | 12582 | ID=Msa1434080-mRNA-1:exon:8998;Parent=Msa1434080-mRNA-1 |
| tig0027465 | exon | 12106 | 12229 | 12106 | ID=Msa1434080-mRNA-1:exon:8997;Parent=Msa1434080-mRNA-1 |
| tig0027465 | exon | 11825 | 12059 | 11825 | ID=Msa1434080-mRNA-1:exon:8996;Parent=Msa1434080-mRNA-1 |
| tig0027465 | exon | 11553 | 11688 | 11553 | ID=Msa1434080-mRNA-1:exon:8995;Parent=Msa1434080-mRNA-1 |
| tig0027465 | exon | 10784 | 10958 | 10784 | ID=Msa1434080-mRNA-1:exon:8994;Parent=Msa1434080-mRNA-1 |
| tig0027465 | exon | 10590 | 10756 | 10590 | ID=Msa1434080-mRNA-1:exon:8993;Parent=Msa1434080-mRNA-1 |
| tig0027465 | exon | 9597 | 9782 | 9597 | ID=Msa1434080-mRNA-1:exon:8992;Parent=Msa1434080-mRNA-1 |
| tig0027465 | exon | 8588 | 8905 | 8588 | ID=Msa1434080-mRNA-1:exon:8991;Parent=Msa1434080-mRNA-1 |
| tig0027465 | CDS | 15011 | 15182 | 15011 | ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1 |
| tig0027465 | CDS | 14732 | 14977 | 14732 | ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1 |
| tig0027465 | CDS | 12975 | 13085 | 12975 | ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1 |
| tig0027465 | CDS | 12582 | 12766 | 12582 | ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1 |
| tig0027465 | CDS | 12106 | 12229 | 12106 | ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1 |
| tig0027465 | CDS | 11825 | 12059 | 11825 | ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1 |
| tig0027465 | CDS | 11553 | 11688 | 11553 | ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1 |
| tig0027465 | CDS | 10784 | 10958 | 10784 | ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1 |
| tig0027465 | CDS | 10590 | 10756 | 10590 | ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1 |
| tig0027465 | CDS | 9597 | 9782 | 9597 | ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1 |
| tig0027465 | CDS | 8588 | 8905 | 8588 | ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
