AlfalfaGEDB | Msa1434080

M. sativa cultivar zhongmu-4 / Msa1434080

KEGG: K02925
GO: -
PFAM: PF00297.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1434080	XP_013457261.1	64.048	331	56	4	140	407	29	359	4.26e-124	384

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1434080	sp\|P22738\|RL32_ARATH	58.075	322	74	5	140	402	29	348	1.55e-111	344

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1434080	A0A072UNM0	64.048	331	56	4	140	407	29	359	2.04e-124	384

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TFs/TRs:

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Gene ID	Type	Classification
Msa1434080	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1434080	MtrunA17_Chr4g0051121	64.048	331	56	4	140	407	29	359	3.92e-128	384
Msa1434080	MtrunA17_Chr1g0201721	57.101	338	68	7	140	407	29	359	3.52e-112	343
Msa1434080	MtrunA17_Chr2g0287651	63.971	136	38	2	405	531	106	239	1.47e-48	183
Msa1434080	MtrunA17_Chr2g0287651	59.091	66	27	0	514	579	493	558	9.35e-18	87.8
Msa1434080	MtrunA17_Chr1g0203051	31.429	140	85	2	404	534	109	246	1.50e-17	87.0
Msa1434080	MtrunA17_Chr6g0479721	48.246	114	45	4	1	113	1	101	3.69e-11	61.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1434080	AT1G61580.1	58.075	322	74	5	140	402	29	348	1.57e-112	344
Msa1434080	AT1G43170.1	51.374	364	117	5	140	446	29	389	5.41e-108	333
Msa1434080	AT1G43170.6	51.374	364	117	5	140	446	29	389	5.41e-108	333
Msa1434080	AT1G43170.2	51.374	364	117	5	140	446	29	389	5.41e-108	333
Msa1434080	AT1G43170.3	51.374	364	117	5	140	446	29	389	5.41e-108	333
Msa1434080	AT1G43170.9	51.374	364	117	5	140	446	29	389	5.41e-108	333
Msa1434080	AT1G43170.8	51.374	364	117	5	140	446	29	389	5.41e-108	333
Msa1434080	AT1G43170.7	51.374	364	117	5	140	446	29	389	5.41e-108	333
Msa1434080	AT1G43170.5	51.374	364	117	5	140	446	29	389	5.41e-108	333
Msa1434080	AT1G43170.4	56.738	282	88	7	189	446	35	306	3.01e-93	291

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Find 161 sgRNAs with CRISPR-Local

Find 480 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCTTCTTCTTTGATT+TGG	0.275291	tig0027465:+12693	None:intergenic
AAACATATCCGATCATTGTT+GGG	0.491804	tig0027465:-15078	Msa1434080:CDS
AACAATGCCTTTACTGATTT+TGG	0.059598	tig0027465:-15148	Msa1434080:CDS
AAGGATATTACTCCGATGGG+TGG	0.616580	tig0027465:-11659	Msa1434080:CDS
AATAAGAACTTGTCATATAA+TGG	0.247315	tig0027465:-10625	Msa1434080:CDS
AATAAGAAGATCTACAAGGT+TGG	0.571689	tig0027465:-11870	Msa1434080:CDS
AATCTGTGCTTTATCTACCT+CGG	0.613894	tig0027465:+10668	None:intergenic
ACAAAAGAAAGCTCATTTGA+TGG	0.389254	tig0027465:-12189	Msa1434080:CDS
ACAAAAGGAGTCAACCTGCA+TGG	0.637584	tig0027465:+13031	None:intergenic
ACATCACACTTACTTGAACT+AGG	0.506150	tig0027465:+12962	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATATCCGATCATTGTT+GGG	-	tig0027465:8670-8689	Msa1434080:CDS	30.0%
CCAGATTTAAAAACATAACC+CGG	-	tig0027465:9145-9164	Msa1434080:intron	30.0%
AAAAACATAACCCGGTAATA+AGG	-	tig0027465:9153-9172	Msa1434080:intron	30.0%
GTAGTTAAAACCTTATTACC+GGG	+	tig0027465:9166-9185	None:intergenic	30.0%
ATCACACATGATGAGAATAT+GGG	+	tig0027465:9380-9399	None:intergenic	30.0%
AATCACACATGATGAGAATA+TGG	+	tig0027465:9381-9400	None:intergenic	30.0%
TCTCAATTATACGCAATTCA+TGG	-	tig0027465:9417-9436	Msa1434080:intron	30.0%
ATTCATGGATTTCCAAATCT+AGG	-	tig0027465:9432-9451	Msa1434080:intron	30.0%
TTCATGGATTTCCAAATCTA+GGG	-	tig0027465:9433-9452	Msa1434080:intron	30.0%
AATTTACTCTTTGACGATGA+CGG	+	tig0027465:9507-9526	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0027465	gene	8588	15182	8588	ID=Msa1434080;Name=Msa1434080
tig0027465	mRNA	8588	15182	8588	ID=Msa1434080-mRNA-1;Parent=Msa1434080;Name=Msa1434080-mRNA-1;_AED=0.26;_eAED=0.31;_QI=0\|0\|0\|0.90\|0.4\|0.45\|11\|0\|684
tig0027465	exon	15011	15182	15011	ID=Msa1434080-mRNA-1:exon:9001;Parent=Msa1434080-mRNA-1
tig0027465	exon	14732	14977	14732	ID=Msa1434080-mRNA-1:exon:9000;Parent=Msa1434080-mRNA-1
tig0027465	exon	12975	13085	12975	ID=Msa1434080-mRNA-1:exon:8999;Parent=Msa1434080-mRNA-1
tig0027465	exon	12582	12766	12582	ID=Msa1434080-mRNA-1:exon:8998;Parent=Msa1434080-mRNA-1
tig0027465	exon	12106	12229	12106	ID=Msa1434080-mRNA-1:exon:8997;Parent=Msa1434080-mRNA-1
tig0027465	exon	11825	12059	11825	ID=Msa1434080-mRNA-1:exon:8996;Parent=Msa1434080-mRNA-1
tig0027465	exon	11553	11688	11553	ID=Msa1434080-mRNA-1:exon:8995;Parent=Msa1434080-mRNA-1
tig0027465	exon	10784	10958	10784	ID=Msa1434080-mRNA-1:exon:8994;Parent=Msa1434080-mRNA-1
tig0027465	exon	10590	10756	10590	ID=Msa1434080-mRNA-1:exon:8993;Parent=Msa1434080-mRNA-1
tig0027465	exon	9597	9782	9597	ID=Msa1434080-mRNA-1:exon:8992;Parent=Msa1434080-mRNA-1
tig0027465	exon	8588	8905	8588	ID=Msa1434080-mRNA-1:exon:8991;Parent=Msa1434080-mRNA-1
tig0027465	CDS	15011	15182	15011	ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1
tig0027465	CDS	14732	14977	14732	ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1
tig0027465	CDS	12975	13085	12975	ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1
tig0027465	CDS	12582	12766	12582	ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1
tig0027465	CDS	12106	12229	12106	ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1
tig0027465	CDS	11825	12059	11825	ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1
tig0027465	CDS	11553	11688	11553	ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1
tig0027465	CDS	10784	10958	10784	ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1
tig0027465	CDS	10590	10756	10590	ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1
tig0027465	CDS	9597	9782	9597	ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1
tig0027465	CDS	8588	8905	8588	ID=Msa1434080-mRNA-1:cds;Parent=Msa1434080-mRNA-1

Gene Sequence

>Msa1434080

ATGGAAAACAACAACAATGCCTTTACTGATTTTGGTACACCGGAACATGATTACGGTTCTACGGATGTGGATTTGAGTGACGAAACATATCCGATCATTGTTGGGAGTGGTGGTAAATCTACTGAGAATGTTGAACAGAATGTAGATGATGATGATGATGATGTGAGTCATGGTGATGAGCGATATGAAGAAACTGGAGACAATGAAAGTGATGATGGTGGTTGTTCTGGTGATTATAGTGCTGGTGATAAAGGTGAAGATGATGGAAGTGAATGCGATGAAAGTCAAGGTGATGAAGGTGAAGGTGATGAAAGTGAAGGTCATGCTAGTGAAGGTGATGAAAGTGAAGGTGATGAAAGTGAAGGTCATGGTAGTGAAGGTGATAACAATTTAGCTGAAGATGATGATGTAGTTGTTGTGAAAGCTTCCCCAAAAGACGATCCTACCAAACCATGCAGGTTGACTCCTTTTGTGGGTTACAAGTCTGGGATGACCCATATAGTTAGGGAGGTGGAGAAACCTAGTTCAAACTTTTACCAAGTAGAAGGCTTTTACCAAGTAGGCTTTTACAAGAACTGGGCCAAATCAAAGAAGAAGGCTTTTACCAAGTATACCAAAAAATATGAAACTGATGAAGGAAAGAAAGATATTCAAACTCAGCTTGAGAAATTGAAGAAGTATGCCATTGTTATTCTTGTTCTTGCTCATACTCAGGAAGTTGAAGGGTCTAAAACAAAAGAAAGCTCATTTGATGGAAATCCAGGTGAATGGTGGAACAGTAAGCCAGAAGGTGGACTATGCATACAATTTCTTCGAAAAGCAAATCCCAGTGGATGCAGTAAAGGTTATGAAGGTGTTGTAACTCGTTGGGGTGTCACTCGCCTTCCACGAAAGACTCACAGAGGTCTTAGGAAGGTTGCTTGTATTGGTGCATGTCACCCTGCCCGTGTTTCTTTCACAGTTGCCAGGGCTGGTCAGAATGGATATCATCATCGTATCGAGCGGAATAAGAAGATCTACAAGGTTGGCAAGCAGGACCAAGAGTCACATACAGCCATCACCGAATTTGACAGGACTGAGAAGGATATTACTCCGATGGGTGGATTCCCTCATTATGGTGTGGTGAATCATGATTATCTTATGATCAAGGGAGGCTGTGTTGGACCAAAGAAGCGGGTTGTCACTCTTCGTCAGTCACTGCTCAAGCTAAGTGATATTAGGCGCAATGTTAACGGTGAGATTGTAATGAGGCAGTATGTATGCAACAAGCAGGGGTTCAGAGATAAGAAGCATTTATCAAGGTTAGATAGGCAAAGAGATCATCGACGTATCACTCGTACAAAGTGTCCAGCTAGGCTCCGTGTTCACTACAGACCCAAAAAGGAGGGTCACAACCATGAACCTACTCCAACCAATGCTGTGCATTTACACCCTGTTTATCGGAAAATATCCGAGGTAGATAAAGCACAGATTGATGGTCTTCAGTCACACGGAATAAGAACTTGTCATATAATGGGATACATGGTGGCTCAGAAGGGTGGATATCCCGGTGCAATGAGAGGCTACAGAAATAACGAACTTGTAGCTGATTTTAAATCCAGGTTTTCATCCCCTGTGCTGACAACTCATCTGCGTTGTCTTGAACGCGAGGCTGCTGAAATCTATACGGCAGAGATCTTTCAAGAAGTGAAAGAAGAAATTATGAAAGGTGTTGCACTGAGTGTGAAGGAAAAAGAACATGCTAGCCAGAAAGACGTGGGAGAAGGATCAAAGGGAGTGAAATCAAAGAAAAAGAATTGTTCTGCAAGCAATGAACATCTTTCTGCGCCCATGTCTCAGCATGCTAGCCAGAAAGACGTGGGAGCAGGATCAAAGGGAGGACACCCAAAGAAAAAGACATGTGCTGCAAGCAGTCAACATATTTCTGCGCCCATGTCTCAGCATGCTAGCCAAAAAGACGTGGGAGGAGGATCAAAGGGAGGACACCCAAAGAAAAAGACATGTGCTGCAAGCAGTCAACATATTTCTGCGCCCATGTCTCAGCATGCTAGCTAA

Protein sequence

>Msa1434080

MENNNNAFTDFGTPEHDYGSTDVDLSDETYPIIVGSGGKSTENVEQNVDDDDDDVSHGDERYEETGDNESDDGGCSGDYSAGDKGEDDGSECDESQGDEGEGDESEGHASEGDESEGDESEGHGSEGDNNLAEDDDVVVVKASPKDDPTKPCRLTPFVGYKSGMTHIVREVEKPSSNFYQVEGFYQVGFYKNWAKSKKKAFTKYTKKYETDEGKKDIQTQLEKLKKYAIVILVLAHTQEVEGSKTKESSFDGNPGEWWNSKPEGGLCIQFLRKANPSGCSKGYEGVVTRWGVTRLPRKTHRGLRKVACIGACHPARVSFTVARAGQNGYHHRIERNKKIYKVGKQDQESHTAITEFDRTEKDITPMGGFPHYGVVNHDYLMIKGGCVGPKKRVVTLRQSLLKLSDIRRNVNGEIVMRQYVCNKQGFRDKKHLSRLDRQRDHRRITRTKCPARLRVHYRPKKEGHNHEPTPTNAVHLHPVYRKISEVDKAQIDGLQSHGIRTCHIMGYMVAQKGGYPGAMRGYRNNELVADFKSRFSSPVLTTHLRCLEREAAEIYTAEIFQEVKEEIMKGVALSVKEKEHASQKDVGEGSKGVKSKKKNCSASNEHLSAPMSQHASQKDVGAGSKGGHPKKKTCAASSQHISAPMSQHASQKDVGGGSKGGHPKKKTCAASSQHISAPMSQHAS*