Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434470 | KEH30945.1 | 62.766 | 188 | 35 | 4 | 4 | 156 | 1 | 188 | 7.66e-65 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434470 | sp|A3BKM2|WOX13_ORYSJ | 69.811 | 53 | 14 | 1 | 104 | 154 | 145 | 197 | 3.98e-18 | 82.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434470 | A0A072UYM1 | 62.766 | 188 | 35 | 4 | 4 | 156 | 1 | 188 | 3.66e-65 | 208 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1434470 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434470 | MtrunA17_Chr7g0223471 | 74.545 | 55 | 12 | 1 | 104 | 156 | 56 | 110 | 4.24e-21 | 88.2 |
| Msa1434470 | MtrunA17_Chr2g0283141 | 58.667 | 75 | 23 | 3 | 90 | 156 | 44 | 118 | 4.20e-18 | 80.1 |
| Msa1434470 | MtrunA17_Chr4g0046231 | 76.190 | 42 | 10 | 0 | 112 | 153 | 1 | 42 | 1.03e-15 | 72.8 |
| Msa1434470 | MtrunA17_Chr2g0291801 | 75.000 | 40 | 10 | 0 | 1 | 40 | 21 | 60 | 1.14e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434470 | AT2G33880.2 | 67.273 | 55 | 16 | 1 | 104 | 156 | 64 | 118 | 1.66e-18 | 81.3 |
| Msa1434470 | AT2G33880.1 | 67.273 | 55 | 16 | 1 | 104 | 156 | 64 | 118 | 1.79e-18 | 81.3 |
| Msa1434470 | AT5G45980.1 | 59.259 | 54 | 20 | 1 | 104 | 155 | 64 | 117 | 3.12e-15 | 71.6 |
Find 35 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTAGTGGGTAACCTATTA+TGG | 0.165079 | tig0027531:+30722 | None:intergenic |
| TTTGGAAACAATTCCATAAT+AGG | 0.224897 | tig0027531:-30735 | Msa1434470:CDS |
| ACATCAAACCAAAGCAAATT+TGG | 0.226916 | tig0027531:+29933 | None:intergenic |
| GTTGAAATGGCTCGGTGTTT+CGG | 0.347739 | tig0027531:-30587 | Msa1434470:CDS |
| GCTTCTGAAGTTGGATTAAT+CGG | 0.358305 | tig0027531:-30004 | Msa1434470:CDS |
| CGTGAACAAATACAAGAGTT+TGG | 0.374413 | tig0027531:-29662 | Msa1434470:CDS |
| AAGGATAATCTAAGCTTTAG+AGG | 0.381928 | tig0027531:-30703 | Msa1434470:CDS |
| AGAATTTGCCAAATTTGCTT+TGG | 0.404629 | tig0027531:-29941 | Msa1434470:intron |
| GTGAGAGGTTGGGAGTGATA+TGG | 0.406525 | tig0027531:-30492 | Msa1434470:CDS |
| ATTTGGCAAATTCTACGATT+CGG | 0.419671 | tig0027531:+29950 | None:intergenic |
| TGATAGGAGGCTTCTGAAGT+TGG | 0.429973 | tig0027531:-30013 | Msa1434470:intron |
| TGAGAATGTCGGAGTTGGTT+TGG | 0.454195 | tig0027531:-30753 | None:intergenic |
| AAAGCTTAGATTATCCTTAG+TGG | 0.458907 | tig0027531:+30708 | None:intergenic |
| TTTGGAGCGAGTCGTTGAAA+TGG | 0.481106 | tig0027531:-30600 | Msa1434470:intron |
| TAATCGGCTGCGAGGAATGC+GGG | 0.483466 | tig0027531:-29988 | Msa1434470:CDS |
| CCATAATAGGTTACCCACTA+AGG | 0.490396 | tig0027531:-30722 | Msa1434470:CDS |
| TGAGAGGTTGGGAGTGATAT+GGG | 0.491705 | tig0027531:-30491 | Msa1434470:intron |
| TTATATTGTGTTGGTGGCTG+TGG | 0.501099 | tig0027531:-30661 | Msa1434470:CDS |
| TAAAACCGTTCGTGAGAGGT+TGG | 0.503953 | tig0027531:-30503 | Msa1434470:CDS |
| AATTCATCGTTATATTGTGT+TGG | 0.508384 | tig0027531:-30670 | Msa1434470:CDS |
| TTTGCTTGCTTCTGGACTTG+TGG | 0.510762 | tig0027531:+29600 | None:intergenic |
| TCATCGTTATATTGTGTTGG+TGG | 0.517205 | tig0027531:-30667 | Msa1434470:CDS |
| ATTGTGTTGGTGGCTGTGGT+AGG | 0.520120 | tig0027531:-30657 | Msa1434470:CDS |
| AAAACCGTTCGTGAGAGGTT+GGG | 0.528613 | tig0027531:-30502 | Msa1434470:CDS |
| GAGCATCTCATTATGTTCAA+AGG | 0.529738 | tig0027531:-30541 | Msa1434470:CDS |
| AAGCTTAGATTATCCTTAGT+GGG | 0.535162 | tig0027531:+30709 | None:intergenic |
| AGCGAGTCGTTGAAATGGCT+CGG | 0.550347 | tig0027531:-30595 | Msa1434470:intron |
| ATACAAGAGTTTGGACAAGT+TGG | 0.550704 | tig0027531:-29653 | Msa1434470:CDS |
| TCTGTTGAGAATGTCGGAGT+TGG | 0.556282 | tig0027531:-30758 | None:intergenic |
| ATCTAAGCTTTAGAGGTGAG+AGG | 0.606429 | tig0027531:-30696 | Msa1434470:CDS |
| CACTCCCAACCTCTCACGAA+CGG | 0.609388 | tig0027531:+30498 | None:intergenic |
| TAGGTAAAACCGTTCGTGAG+AGG | 0.610860 | tig0027531:-30507 | Msa1434470:CDS |
| TTCAAAGGTCTAGTTGCAGT+AGG | 0.648544 | tig0027531:-30526 | Msa1434470:CDS |
| TTAATCGGCTGCGAGGAATG+CGG | 0.653087 | tig0027531:-29989 | Msa1434470:CDS |
| AGTTGGATTAATCGGCTGCG+AGG | 0.696005 | tig0027531:-29996 | Msa1434470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCCATCATAAAAAGATA+TGG | + | tig0027531:29714-29733 | None:intergenic | 20.0% |
| !!! | ATATCTTTTTATGATGGATT+TGG | - | tig0027531:29713-29732 | Msa1434470:intron | 20.0% |
| !! | ATGAATATAAAGTTCTATCT+TGG | - | tig0027531:29944-29963 | Msa1434470:CDS | 20.0% |
| !!! | TCATTTGTTTAGTTTTGTTT+TGG | - | tig0027531:30082-30101 | Msa1434470:intron | 20.0% |
| !! | TTATAACACTTAGTTGTAAT+AGG | + | tig0027531:30594-30613 | None:intergenic | 20.0% |
| !! | AAATCCATCATAAAAAGATA+TGG | + | tig0027531:29714-29733 | None:intergenic | 20.0% |
| !!! | ATATCTTTTTATGATGGATT+TGG | - | tig0027531:29713-29732 | Msa1434470:intron | 20.0% |
| !! | ATGAATATAAAGTTCTATCT+TGG | - | tig0027531:29944-29963 | Msa1434470:CDS | 20.0% |
| !!! | TCATTTGTTTAGTTTTGTTT+TGG | - | tig0027531:30082-30101 | Msa1434470:intron | 20.0% |
| !! | TTATAACACTTAGTTGTAAT+AGG | + | tig0027531:30594-30613 | None:intergenic | 20.0% |
| ! | TTTGGAAACAATTCCATAAT+AGG | - | tig0027531:29596-29615 | Msa1434470:CDS | 25.0% |
| ! | AATTCATCGTTATATTGTGT+TGG | - | tig0027531:29661-29680 | Msa1434470:CDS | 25.0% |
| !! | TGAACCATATCTTTTTATGA+TGG | - | tig0027531:29707-29726 | Msa1434470:intron | 25.0% |
| ! | GAATGCAATGATATTTAAAC+AGG | - | tig0027531:29894-29913 | Msa1434470:intron | 25.0% |
| ! | TGTAAAGGTTTATATATGCA+AGG | - | tig0027531:30526-30545 | Msa1434470:CDS | 25.0% |
| ! | TATAAATAAATCTTTGCTCC+AGG | - | tig0027531:30609-30628 | Msa1434470:intron | 25.0% |
| ! | ATAAATAAATCTTTGCTCCA+GGG | - | tig0027531:30610-30629 | Msa1434470:intron | 25.0% |
| ! | TTTGGAAACAATTCCATAAT+AGG | - | tig0027531:29596-29615 | Msa1434470:CDS | 25.0% |
| ! | AATTCATCGTTATATTGTGT+TGG | - | tig0027531:29661-29680 | Msa1434470:CDS | 25.0% |
| !! | TGAACCATATCTTTTTATGA+TGG | - | tig0027531:29707-29726 | Msa1434470:intron | 25.0% |
| ! | GAATGCAATGATATTTAAAC+AGG | - | tig0027531:29894-29913 | Msa1434470:intron | 25.0% |
| ! | TGTAAAGGTTTATATATGCA+AGG | - | tig0027531:30526-30545 | Msa1434470:CDS | 25.0% |
| ! | TATAAATAAATCTTTGCTCC+AGG | - | tig0027531:30609-30628 | Msa1434470:intron | 25.0% |
| ! | ATAAATAAATCTTTGCTCCA+GGG | - | tig0027531:30610-30629 | Msa1434470:intron | 25.0% |
| AAGCTTAGATTATCCTTAGT+GGG | + | tig0027531:29625-29644 | None:intergenic | 30.0% | |
| AAAGCTTAGATTATCCTTAG+TGG | + | tig0027531:29626-29645 | None:intergenic | 30.0% | |
| ! | AAGGATAATCTAAGCTTTAG+AGG | - | tig0027531:29628-29647 | Msa1434470:CDS | 30.0% |
| ATTCCAAATGGAAGAGATAA+TGG | + | tig0027531:29869-29888 | None:intergenic | 30.0% | |
| TTAAACAGGCTGCTATTAAT+TGG | - | tig0027531:29908-29927 | Msa1434470:intron | 30.0% | |
| TAAACAGGCTGCTATTAATT+GGG | - | tig0027531:29909-29928 | Msa1434470:intron | 30.0% | |
| TATTAATTGGGAAAAGGTAG+CGG | - | tig0027531:29921-29940 | Msa1434470:intron | 30.0% | |
| TTAATCCTTTGGACAGTTTA+GGG | - | tig0027531:30022-30041 | Msa1434470:intron | 30.0% | |
| ATTTGGCAAATTCTACGATT+CGG | + | tig0027531:30384-30403 | None:intergenic | 30.0% | |
| ! | AGAATTTGCCAAATTTGCTT+TGG | - | tig0027531:30390-30409 | Msa1434470:intron | 30.0% |
| ACATCAAACCAAAGCAAATT+TGG | + | tig0027531:30401-30420 | None:intergenic | 30.0% | |
| CCATTACAAGATGAAACTAA+TGG | + | tig0027531:30471-30490 | None:intergenic | 30.0% | |
| ! | CCATTAGTTTCATCTTGTAA+TGG | - | tig0027531:30468-30487 | Msa1434470:intron | 30.0% |
| CTTGTTTGTTTGTTTGTATC+AGG | - | tig0027531:30500-30519 | Msa1434470:CDS | 30.0% | |
| ! | GTTTATATATGCAAGGCTTT+TGG | - | tig0027531:30533-30552 | Msa1434470:CDS | 30.0% |
| !!! | GTGATGCTAATGTTTTTTAC+TGG | - | tig0027531:30700-30719 | Msa1434470:CDS | 30.0% |
| AAGCTTAGATTATCCTTAGT+GGG | + | tig0027531:29625-29644 | None:intergenic | 30.0% | |
| AAAGCTTAGATTATCCTTAG+TGG | + | tig0027531:29626-29645 | None:intergenic | 30.0% | |
| ! | AAGGATAATCTAAGCTTTAG+AGG | - | tig0027531:29628-29647 | Msa1434470:CDS | 30.0% |
| ATTCCAAATGGAAGAGATAA+TGG | + | tig0027531:29869-29888 | None:intergenic | 30.0% | |
| TTAAACAGGCTGCTATTAAT+TGG | - | tig0027531:29908-29927 | Msa1434470:intron | 30.0% | |
| TAAACAGGCTGCTATTAATT+GGG | - | tig0027531:29909-29928 | Msa1434470:intron | 30.0% | |
| TATTAATTGGGAAAAGGTAG+CGG | - | tig0027531:29921-29940 | Msa1434470:intron | 30.0% | |
| TTAATCCTTTGGACAGTTTA+GGG | - | tig0027531:30022-30041 | Msa1434470:intron | 30.0% | |
| ATTTGGCAAATTCTACGATT+CGG | + | tig0027531:30384-30403 | None:intergenic | 30.0% | |
| ! | AGAATTTGCCAAATTTGCTT+TGG | - | tig0027531:30390-30409 | Msa1434470:intron | 30.0% |
| ACATCAAACCAAAGCAAATT+TGG | + | tig0027531:30401-30420 | None:intergenic | 30.0% | |
| CCATTACAAGATGAAACTAA+TGG | + | tig0027531:30471-30490 | None:intergenic | 30.0% | |
| ! | CCATTAGTTTCATCTTGTAA+TGG | - | tig0027531:30468-30487 | Msa1434470:intron | 30.0% |
| CTTGTTTGTTTGTTTGTATC+AGG | - | tig0027531:30500-30519 | Msa1434470:CDS | 30.0% | |
| ! | GTTTATATATGCAAGGCTTT+TGG | - | tig0027531:30533-30552 | Msa1434470:CDS | 30.0% |
| !!! | GTGATGCTAATGTTTTTTAC+TGG | - | tig0027531:30700-30719 | Msa1434470:CDS | 30.0% |
| TCATCGTTATATTGTGTTGG+TGG | - | tig0027531:29664-29683 | Msa1434470:CDS | 35.0% | |
| GAGCATCTCATTATGTTCAA+AGG | - | tig0027531:29790-29809 | Msa1434470:intron | 35.0% | |
| TCTCCATTATCTCTTCCATT+TGG | - | tig0027531:29863-29882 | Msa1434470:intron | 35.0% | |
| ATTAACTAGCCAATGGCTTA+GGG | + | tig0027531:30007-30026 | None:intergenic | 35.0% | |
| GTTAATCCTTTGGACAGTTT+AGG | - | tig0027531:30021-30040 | Msa1434470:intron | 35.0% | |
| TAATCCTTTGGACAGTTTAG+GGG | - | tig0027531:30023-30042 | Msa1434470:intron | 35.0% | |
| ! | TTTGGTGATTTGATTGTTGC+AGG | - | tig0027531:30149-30168 | Msa1434470:intron | 35.0% |
| ! | TTGGTGATTTGATTGTTGCA+GGG | - | tig0027531:30150-30169 | Msa1434470:intron | 35.0% |
| GTGTCTATTTGATTGTTGCA+GGG | - | tig0027531:30197-30216 | Msa1434470:intron | 35.0% | |
| CAACTCAAGATAGCAACATA+GGG | + | tig0027531:30283-30302 | None:intergenic | 35.0% | |
| !! | GCTTCTGAAGTTGGATTAAT+CGG | - | tig0027531:30327-30346 | Msa1434470:intron | 35.0% |
| TGAGTTTAGAAGCTTCAGTA+AGG | - | tig0027531:30437-30456 | Msa1434470:intron | 35.0% | |
| GAGTTTAGAAGCTTCAGTAA+GGG | - | tig0027531:30438-30457 | Msa1434470:intron | 35.0% | |
| ! | GTTTGTATCAGGTCTTGTAA+AGG | - | tig0027531:30511-30530 | Msa1434470:CDS | 35.0% |
| ! | ATATGCAAGGCTTTTGGTAT+TGG | - | tig0027531:30539-30558 | Msa1434470:CDS | 35.0% |
| ! | TTTTTAATCTCGTCTCTCTG+CGG | + | tig0027531:30645-30664 | None:intergenic | 35.0% |
| CGTGAACAAATACAAGAGTT+TGG | - | tig0027531:30669-30688 | Msa1434470:CDS | 35.0% | |
| ATACAAGAGTTTGGACAAGT+TGG | - | tig0027531:30678-30697 | Msa1434470:CDS | 35.0% | |
| TCATCGTTATATTGTGTTGG+TGG | - | tig0027531:29664-29683 | Msa1434470:CDS | 35.0% | |
| GAGCATCTCATTATGTTCAA+AGG | - | tig0027531:29790-29809 | Msa1434470:intron | 35.0% | |
| TCTCCATTATCTCTTCCATT+TGG | - | tig0027531:29863-29882 | Msa1434470:intron | 35.0% | |
| ATTAACTAGCCAATGGCTTA+GGG | + | tig0027531:30007-30026 | None:intergenic | 35.0% | |
| GTTAATCCTTTGGACAGTTT+AGG | - | tig0027531:30021-30040 | Msa1434470:intron | 35.0% | |
| TAATCCTTTGGACAGTTTAG+GGG | - | tig0027531:30023-30042 | Msa1434470:intron | 35.0% | |
| ! | TTTGGTGATTTGATTGTTGC+AGG | - | tig0027531:30149-30168 | Msa1434470:intron | 35.0% |
| ! | TTGGTGATTTGATTGTTGCA+GGG | - | tig0027531:30150-30169 | Msa1434470:intron | 35.0% |
| GTGTCTATTTGATTGTTGCA+GGG | - | tig0027531:30197-30216 | Msa1434470:intron | 35.0% | |
| CAACTCAAGATAGCAACATA+GGG | + | tig0027531:30283-30302 | None:intergenic | 35.0% | |
| !! | GCTTCTGAAGTTGGATTAAT+CGG | - | tig0027531:30327-30346 | Msa1434470:intron | 35.0% |
| TGAGTTTAGAAGCTTCAGTA+AGG | - | tig0027531:30437-30456 | Msa1434470:intron | 35.0% | |
| GAGTTTAGAAGCTTCAGTAA+GGG | - | tig0027531:30438-30457 | Msa1434470:intron | 35.0% | |
| ! | GTTTGTATCAGGTCTTGTAA+AGG | - | tig0027531:30511-30530 | Msa1434470:CDS | 35.0% |
| ! | ATATGCAAGGCTTTTGGTAT+TGG | - | tig0027531:30539-30558 | Msa1434470:CDS | 35.0% |
| ! | TTTTTAATCTCGTCTCTCTG+CGG | + | tig0027531:30645-30664 | None:intergenic | 35.0% |
| CGTGAACAAATACAAGAGTT+TGG | - | tig0027531:30669-30688 | Msa1434470:CDS | 35.0% | |
| ATACAAGAGTTTGGACAAGT+TGG | - | tig0027531:30678-30697 | Msa1434470:CDS | 35.0% | |
| ! | CCTTAGTGGGTAACCTATTA+TGG | + | tig0027531:29612-29631 | None:intergenic | 40.0% |
| CCATAATAGGTTACCCACTA+AGG | - | tig0027531:29609-29628 | Msa1434470:CDS | 40.0% | |
| !! | ATCTAAGCTTTAGAGGTGAG+AGG | - | tig0027531:29635-29654 | Msa1434470:CDS | 40.0% |
| !! | TTATATTGTGTTGGTGGCTG+TGG | - | tig0027531:29670-29689 | Msa1434470:CDS | 40.0% |
| !!! | GTTTCGGCTGTTTTTGTTGA+AGG | - | tig0027531:29760-29779 | Msa1434470:intron | 40.0% |
| TTCAAAGGTCTAGTTGCAGT+AGG | - | tig0027531:29805-29824 | Msa1434470:intron | 40.0% | |
| ! | TCTCTTCCATTTGGAATGCT+AGG | - | tig0027531:29872-29891 | Msa1434470:intron | 40.0% |
| TGCATTCCTAGCATTCCAAA+TGG | + | tig0027531:29881-29900 | None:intergenic | 40.0% | |
| GGCTGCTATTAATTGGGAAA+AGG | - | tig0027531:29915-29934 | Msa1434470:intron | 40.0% | |
| TTAACTAGCCAATGGCTTAG+GGG | + | tig0027531:30006-30025 | None:intergenic | 40.0% | |
| GATTAACTAGCCAATGGCTT+AGG | + | tig0027531:30008-30027 | None:intergenic | 40.0% | |
| CCAAAGGATTAACTAGCCAA+TGG | + | tig0027531:30014-30033 | None:intergenic | 40.0% | |
| ! | CCATTGGCTAGTTAATCCTT+TGG | - | tig0027531:30011-30030 | Msa1434470:intron | 40.0% |
| ACACCAAAACAGAACCAACA+CGG | + | tig0027531:30181-30200 | None:intergenic | 40.0% | |
| GGTGTCTATTTGATTGTTGC+AGG | - | tig0027531:30196-30215 | Msa1434470:intron | 40.0% | |
| TTTCTATCGTAGGGGAAGTT+AGG | - | tig0027531:30222-30241 | Msa1434470:intron | 40.0% | |
| TAGCAACATAGGGACTAGAA+CGG | + | tig0027531:30273-30292 | None:intergenic | 40.0% | |
| CCAACTCAAGATAGCAACAT+AGG | + | tig0027531:30284-30303 | None:intergenic | 40.0% | |
| CCTATGTTGCTATCTTGAGT+TGG | - | tig0027531:30281-30300 | Msa1434470:intron | 40.0% | |
| !! | GGTTGTTGTCTTGAGTTGAT+AGG | - | tig0027531:30302-30321 | Msa1434470:intron | 40.0% |
| !! | TGTTGTCTTGAGTTGATAGG+AGG | - | tig0027531:30305-30324 | Msa1434470:intron | 40.0% |
| ! | TTTTAATCTCGTCTCTCTGC+GGG | + | tig0027531:30644-30663 | None:intergenic | 40.0% |
| ! | TCGTTTCTTTTGCTTGCTTC+TGG | + | tig0027531:30742-30761 | None:intergenic | 40.0% |
| ! | CCTTAGTGGGTAACCTATTA+TGG | + | tig0027531:29612-29631 | None:intergenic | 40.0% |
| CCATAATAGGTTACCCACTA+AGG | - | tig0027531:29609-29628 | Msa1434470:CDS | 40.0% | |
| !! | ATCTAAGCTTTAGAGGTGAG+AGG | - | tig0027531:29635-29654 | Msa1434470:CDS | 40.0% |
| !! | TTATATTGTGTTGGTGGCTG+TGG | - | tig0027531:29670-29689 | Msa1434470:CDS | 40.0% |
| !!! | GTTTCGGCTGTTTTTGTTGA+AGG | - | tig0027531:29760-29779 | Msa1434470:intron | 40.0% |
| TTCAAAGGTCTAGTTGCAGT+AGG | - | tig0027531:29805-29824 | Msa1434470:intron | 40.0% | |
| ! | TCTCTTCCATTTGGAATGCT+AGG | - | tig0027531:29872-29891 | Msa1434470:intron | 40.0% |
| TGCATTCCTAGCATTCCAAA+TGG | + | tig0027531:29881-29900 | None:intergenic | 40.0% | |
| GGCTGCTATTAATTGGGAAA+AGG | - | tig0027531:29915-29934 | Msa1434470:intron | 40.0% | |
| TTAACTAGCCAATGGCTTAG+GGG | + | tig0027531:30006-30025 | None:intergenic | 40.0% | |
| GATTAACTAGCCAATGGCTT+AGG | + | tig0027531:30008-30027 | None:intergenic | 40.0% | |
| CCAAAGGATTAACTAGCCAA+TGG | + | tig0027531:30014-30033 | None:intergenic | 40.0% | |
| ! | CCATTGGCTAGTTAATCCTT+TGG | - | tig0027531:30011-30030 | Msa1434470:intron | 40.0% |
| ACACCAAAACAGAACCAACA+CGG | + | tig0027531:30181-30200 | None:intergenic | 40.0% | |
| GGTGTCTATTTGATTGTTGC+AGG | - | tig0027531:30196-30215 | Msa1434470:intron | 40.0% | |
| TTTCTATCGTAGGGGAAGTT+AGG | - | tig0027531:30222-30241 | Msa1434470:intron | 40.0% | |
| TAGCAACATAGGGACTAGAA+CGG | + | tig0027531:30273-30292 | None:intergenic | 40.0% | |
| CCAACTCAAGATAGCAACAT+AGG | + | tig0027531:30284-30303 | None:intergenic | 40.0% | |
| CCTATGTTGCTATCTTGAGT+TGG | - | tig0027531:30281-30300 | Msa1434470:intron | 40.0% | |
| !! | GGTTGTTGTCTTGAGTTGAT+AGG | - | tig0027531:30302-30321 | Msa1434470:intron | 40.0% |
| !! | TGTTGTCTTGAGTTGATAGG+AGG | - | tig0027531:30305-30324 | Msa1434470:intron | 40.0% |
| ! | TTTTAATCTCGTCTCTCTGC+GGG | + | tig0027531:30644-30663 | None:intergenic | 40.0% |
| ! | TCGTTTCTTTTGCTTGCTTC+TGG | + | tig0027531:30742-30761 | None:intergenic | 40.0% |
| ! | TTTGGAGCGAGTCGTTGAAA+TGG | - | tig0027531:29731-29750 | Msa1434470:intron | 45.0% |
| !! | GTTGAAATGGCTCGGTGTTT+CGG | - | tig0027531:29744-29763 | Msa1434470:intron | 45.0% |
| !!! | TCGGCTGTTTTTGTTGAAGG+AGG | - | tig0027531:29763-29782 | Msa1434470:intron | 45.0% |
| TAGGTAAAACCGTTCGTGAG+AGG | - | tig0027531:29824-29843 | Msa1434470:intron | 45.0% | |
| TAAAACCGTTCGTGAGAGGT+TGG | - | tig0027531:29828-29847 | Msa1434470:intron | 45.0% | |
| AAAACCGTTCGTGAGAGGTT+GGG | - | tig0027531:29829-29848 | Msa1434470:intron | 45.0% | |
| TGAGAGGTTGGGAGTGATAT+GGG | - | tig0027531:29840-29859 | Msa1434470:intron | 45.0% | |
| TCAACTTTCCCCTAAGCCAT+TGG | - | tig0027531:29995-30014 | Msa1434470:CDS | 45.0% | |
| TCACCAAAGCACAACCAACA+GGG | + | tig0027531:30137-30156 | None:intergenic | 45.0% | |
| ATCACCAAAGCACAACCAAC+AGG | + | tig0027531:30138-30157 | None:intergenic | 45.0% | |
| CACCAAAACAGAACCAACAC+GGG | + | tig0027531:30180-30199 | None:intergenic | 45.0% | |
| TTGCAGGGACTTTCTATCGT+AGG | - | tig0027531:30212-30231 | Msa1434470:intron | 45.0% | |
| TGCAGGGACTTTCTATCGTA+GGG | - | tig0027531:30213-30232 | Msa1434470:intron | 45.0% | |
| !! | TGATAGGAGGCTTCTGAAGT+TGG | - | tig0027531:30318-30337 | Msa1434470:intron | 45.0% |
| ! | GGAATGCGGGATTTTGAATG+TGG | - | tig0027531:30356-30375 | Msa1434470:intron | 45.0% |
| TTTGCTTGCTTCTGGACTTG+TGG | + | tig0027531:30734-30753 | None:intergenic | 45.0% | |
| ! | TTTGGAGCGAGTCGTTGAAA+TGG | - | tig0027531:29731-29750 | Msa1434470:intron | 45.0% |
| !! | GTTGAAATGGCTCGGTGTTT+CGG | - | tig0027531:29744-29763 | Msa1434470:intron | 45.0% |
| !!! | TCGGCTGTTTTTGTTGAAGG+AGG | - | tig0027531:29763-29782 | Msa1434470:intron | 45.0% |
| TAGGTAAAACCGTTCGTGAG+AGG | - | tig0027531:29824-29843 | Msa1434470:intron | 45.0% | |
| TAAAACCGTTCGTGAGAGGT+TGG | - | tig0027531:29828-29847 | Msa1434470:intron | 45.0% | |
| AAAACCGTTCGTGAGAGGTT+GGG | - | tig0027531:29829-29848 | Msa1434470:intron | 45.0% | |
| TGAGAGGTTGGGAGTGATAT+GGG | - | tig0027531:29840-29859 | Msa1434470:intron | 45.0% | |
| TCAACTTTCCCCTAAGCCAT+TGG | - | tig0027531:29995-30014 | Msa1434470:CDS | 45.0% | |
| TCACCAAAGCACAACCAACA+GGG | + | tig0027531:30137-30156 | None:intergenic | 45.0% | |
| ATCACCAAAGCACAACCAAC+AGG | + | tig0027531:30138-30157 | None:intergenic | 45.0% | |
| CACCAAAACAGAACCAACAC+GGG | + | tig0027531:30180-30199 | None:intergenic | 45.0% | |
| TTGCAGGGACTTTCTATCGT+AGG | - | tig0027531:30212-30231 | Msa1434470:intron | 45.0% | |
| TGCAGGGACTTTCTATCGTA+GGG | - | tig0027531:30213-30232 | Msa1434470:intron | 45.0% | |
| !! | TGATAGGAGGCTTCTGAAGT+TGG | - | tig0027531:30318-30337 | Msa1434470:intron | 45.0% |
| ! | GGAATGCGGGATTTTGAATG+TGG | - | tig0027531:30356-30375 | Msa1434470:intron | 45.0% |
| TTTGCTTGCTTCTGGACTTG+TGG | + | tig0027531:30734-30753 | None:intergenic | 45.0% | |
| !! | ATTGTGTTGGTGGCTGTGGT+AGG | - | tig0027531:29674-29693 | Msa1434470:CDS | 50.0% |
| AGCGAGTCGTTGAAATGGCT+CGG | - | tig0027531:29736-29755 | Msa1434470:intron | 50.0% | |
| GTGAGAGGTTGGGAGTGATA+TGG | - | tig0027531:29839-29858 | Msa1434470:intron | 50.0% | |
| TGCACCCCTAAACTGTCCAA+AGG | + | tig0027531:30030-30049 | None:intergenic | 50.0% | |
| ! | TGGACAGTTTAGGGGTGCAT+AGG | - | tig0027531:30031-30050 | Msa1434470:intron | 50.0% |
| ! | AGGGGTGCATAGGTTTCTGT+AGG | - | tig0027531:30041-30060 | Msa1434470:intron | 50.0% |
| ! | TTTCTGTGGAGCATCCCTGT+TGG | - | tig0027531:30120-30139 | Msa1434470:intron | 50.0% |
| ! | CATCCCTGTTGGTTGTGCTT+TGG | - | tig0027531:30131-30150 | Msa1434470:intron | 50.0% |
| CAAAACAGAACCAACACGGG+TGG | + | tig0027531:30177-30196 | None:intergenic | 50.0% | |
| !!! | CACCCGTGTTGGTTCTGTTT+TGG | - | tig0027531:30175-30194 | Msa1434470:intron | 50.0% |
| GCAGGGACTTTCTATCGTAG+GGG | - | tig0027531:30214-30233 | Msa1434470:intron | 50.0% | |
| AGTTGGATTAATCGGCTGCG+AGG | - | tig0027531:30335-30354 | Msa1434470:intron | 50.0% | |
| TTAATCGGCTGCGAGGAATG+CGG | - | tig0027531:30342-30361 | Msa1434470:intron | 50.0% | |
| !! | ATTGTGTTGGTGGCTGTGGT+AGG | - | tig0027531:29674-29693 | Msa1434470:CDS | 50.0% |
| AGCGAGTCGTTGAAATGGCT+CGG | - | tig0027531:29736-29755 | Msa1434470:intron | 50.0% | |
| GTGAGAGGTTGGGAGTGATA+TGG | - | tig0027531:29839-29858 | Msa1434470:intron | 50.0% | |
| TGCACCCCTAAACTGTCCAA+AGG | + | tig0027531:30030-30049 | None:intergenic | 50.0% | |
| ! | TGGACAGTTTAGGGGTGCAT+AGG | - | tig0027531:30031-30050 | Msa1434470:intron | 50.0% |
| ! | AGGGGTGCATAGGTTTCTGT+AGG | - | tig0027531:30041-30060 | Msa1434470:intron | 50.0% |
| ! | TTTCTGTGGAGCATCCCTGT+TGG | - | tig0027531:30120-30139 | Msa1434470:intron | 50.0% |
| ! | CATCCCTGTTGGTTGTGCTT+TGG | - | tig0027531:30131-30150 | Msa1434470:intron | 50.0% |
| CAAAACAGAACCAACACGGG+TGG | + | tig0027531:30177-30196 | None:intergenic | 50.0% | |
| !!! | CACCCGTGTTGGTTCTGTTT+TGG | - | tig0027531:30175-30194 | Msa1434470:intron | 50.0% |
| GCAGGGACTTTCTATCGTAG+GGG | - | tig0027531:30214-30233 | Msa1434470:intron | 50.0% | |
| AGTTGGATTAATCGGCTGCG+AGG | - | tig0027531:30335-30354 | Msa1434470:intron | 50.0% | |
| TTAATCGGCTGCGAGGAATG+CGG | - | tig0027531:30342-30361 | Msa1434470:intron | 50.0% | |
| CACTCCCAACCTCTCACGAA+CGG | + | tig0027531:29836-29855 | None:intergenic | 55.0% | |
| !! | GCAGCGCTCTTCTGTTTCTG+TGG | - | tig0027531:30106-30125 | Msa1434470:intron | 55.0% |
| TAATCGGCTGCGAGGAATGC+GGG | - | tig0027531:30343-30362 | Msa1434470:intron | 55.0% | |
| CACTCCCAACCTCTCACGAA+CGG | + | tig0027531:29836-29855 | None:intergenic | 55.0% | |
| !! | GCAGCGCTCTTCTGTTTCTG+TGG | - | tig0027531:30106-30125 | Msa1434470:intron | 55.0% |
| TAATCGGCTGCGAGGAATGC+GGG | - | tig0027531:30343-30362 | Msa1434470:intron | 55.0% | |
| CTCTGCGGGTTCAACATCCC+TGG | + | tig0027531:30630-30649 | None:intergenic | 60.0% | |
| CTCTGCGGGTTCAACATCCC+TGG | + | tig0027531:30630-30649 | None:intergenic | 60.0% | |
| GTTGCAGGGACCACCCGTGT+TGG | - | tig0027531:30164-30183 | Msa1434470:intron | 65.0% | |
| GTTGCAGGGACCACCCGTGT+TGG | - | tig0027531:30164-30183 | Msa1434470:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027531 | gene | 29583 | 30770 | 29583 | ID=Msa1434470;Name=Msa1434470 |
| tig0027531 | mRNA | 29583 | 30770 | 29583 | ID=Msa1434470-mRNA-1;Parent=Msa1434470;Name=Msa1434470-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|0|0.25|4|0|156 |
| tig0027531 | exon | 30648 | 30770 | 30648 | ID=Msa1434470-mRNA-1:exon:9229;Parent=Msa1434470-mRNA-1 |
| tig0027531 | exon | 30492 | 30611 | 30492 | ID=Msa1434470-mRNA-1:exon:9228;Parent=Msa1434470-mRNA-1 |
| tig0027531 | exon | 29942 | 30029 | 29942 | ID=Msa1434470-mRNA-1:exon:9227;Parent=Msa1434470-mRNA-1 |
| tig0027531 | exon | 29583 | 29722 | 29583 | ID=Msa1434470-mRNA-1:exon:9226;Parent=Msa1434470-mRNA-1 |
| tig0027531 | CDS | 30648 | 30770 | 30648 | ID=Msa1434470-mRNA-1:cds;Parent=Msa1434470-mRNA-1 |
| tig0027531 | CDS | 30492 | 30611 | 30492 | ID=Msa1434470-mRNA-1:cds;Parent=Msa1434470-mRNA-1 |
| tig0027531 | CDS | 29942 | 30029 | 29942 | ID=Msa1434470-mRNA-1:cds;Parent=Msa1434470-mRNA-1 |
| tig0027531 | CDS | 29583 | 29722 | 29583 | ID=Msa1434470-mRNA-1:cds;Parent=Msa1434470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
