Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434490 | XP_013456911.1 | 87.273 | 275 | 23 | 3 | 1 | 270 | 1 | 268 | 3.90e-168 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434490 | sp|Q9LNB9|LBD2_ARATH | 41.837 | 98 | 55 | 2 | 6 | 102 | 24 | 120 | 5.44e-22 | 94.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434490 | A0A072UMQ1 | 87.273 | 275 | 23 | 3 | 1 | 270 | 1 | 268 | 1.86e-168 | 476 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1434490 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434490 | MtrunA17_Chr4g0046201 | 87.273 | 275 | 23 | 3 | 1 | 270 | 1 | 268 | 3.58e-172 | 476 |
| Msa1434490 | MtrunA17_Chr4g0040831 | 46.535 | 101 | 52 | 1 | 6 | 104 | 15 | 115 | 4.98e-28 | 106 |
| Msa1434490 | MtrunA17_Chr3g0115431 | 39.175 | 97 | 59 | 0 | 3 | 99 | 6 | 102 | 2.62e-21 | 89.4 |
| Msa1434490 | MtrunA17_Chr5g0437571 | 38.542 | 96 | 59 | 0 | 1 | 96 | 1 | 96 | 8.57e-21 | 86.7 |
| Msa1434490 | MtrunA17_Chr3g0114061 | 39.130 | 92 | 56 | 0 | 5 | 96 | 7 | 98 | 1.13e-20 | 86.3 |
| Msa1434490 | MtrunA17_Chr7g0227511 | 36.842 | 95 | 60 | 0 | 5 | 99 | 10 | 104 | 7.87e-20 | 84.3 |
| Msa1434490 | MtrunA17_Chr2g0311601 | 37.864 | 103 | 63 | 1 | 5 | 106 | 12 | 114 | 1.22e-19 | 83.2 |
| Msa1434490 | MtrunA17_Chr6g0452691 | 34.351 | 131 | 67 | 3 | 1 | 112 | 4 | 134 | 2.68e-19 | 83.2 |
| Msa1434490 | MtrunA17_Chr4g0043421 | 38.710 | 93 | 57 | 0 | 7 | 99 | 16 | 108 | 5.10e-19 | 82.0 |
| Msa1434490 | MtrunA17_Chr3g0106101 | 29.197 | 137 | 85 | 1 | 5 | 129 | 6 | 142 | 1.06e-18 | 81.3 |
| Msa1434490 | MtrunA17_Chr3g0117121 | 36.842 | 95 | 60 | 0 | 5 | 99 | 9 | 103 | 1.67e-18 | 81.3 |
| Msa1434490 | MtrunA17_Chr4g0058651 | 36.842 | 95 | 60 | 0 | 5 | 99 | 10 | 104 | 2.11e-18 | 80.9 |
| Msa1434490 | MtrunA17_Chr8g0374591 | 36.275 | 102 | 58 | 1 | 7 | 101 | 9 | 110 | 7.46e-18 | 77.8 |
| Msa1434490 | MtrunA17_Chr6g0449641 | 32.632 | 95 | 64 | 0 | 5 | 99 | 8 | 102 | 9.81e-17 | 75.1 |
| Msa1434490 | MtrunA17_Chr8g0353981 | 32.075 | 106 | 58 | 1 | 7 | 98 | 8 | 113 | 1.74e-16 | 76.6 |
| Msa1434490 | MtrunA17_Chr6g0452671 | 40.000 | 80 | 48 | 0 | 6 | 85 | 11 | 90 | 3.03e-16 | 75.1 |
| Msa1434490 | MtrunA17_Chr5g0402611 | 33.684 | 95 | 63 | 0 | 5 | 99 | 7 | 101 | 4.77e-16 | 76.6 |
| Msa1434490 | MtrunA17_Chr1g0200201 | 33.684 | 95 | 63 | 0 | 7 | 101 | 73 | 167 | 6.35e-16 | 75.1 |
| Msa1434490 | MtrunA17_Chr5g0437401 | 32.632 | 95 | 64 | 0 | 5 | 99 | 10 | 104 | 1.19e-15 | 73.2 |
| Msa1434490 | MtrunA17_Chr4g0030001 | 33.663 | 101 | 66 | 1 | 7 | 106 | 25 | 125 | 1.22e-15 | 73.2 |
| Msa1434490 | MtrunA17_Chr6g0449651 | 32.632 | 95 | 64 | 0 | 5 | 99 | 66 | 160 | 1.79e-15 | 73.2 |
| Msa1434490 | MtrunA17_Chr3g0129071 | 35.354 | 99 | 61 | 1 | 5 | 100 | 46 | 144 | 2.59e-15 | 73.6 |
| Msa1434490 | MtrunA17_Chr3g0097221 | 33.684 | 95 | 63 | 0 | 5 | 99 | 6 | 100 | 2.90e-15 | 73.9 |
| Msa1434490 | MtrunA17_Chr4g0055441 | 32.500 | 120 | 69 | 4 | 6 | 113 | 2 | 121 | 3.18e-15 | 71.2 |
| Msa1434490 | MtrunA17_Chr3g0113891 | 31.959 | 97 | 66 | 0 | 3 | 99 | 11 | 107 | 3.24e-15 | 72.0 |
| Msa1434490 | MtrunA17_Chr8g0342351 | 30.693 | 101 | 70 | 0 | 6 | 106 | 12 | 112 | 5.25e-15 | 72.8 |
| Msa1434490 | MtrunA17_Chr8g0374601 | 35.106 | 94 | 61 | 0 | 7 | 100 | 27 | 120 | 6.00e-15 | 73.2 |
| Msa1434490 | MtrunA17_Chr7g0225111 | 32.955 | 88 | 59 | 0 | 5 | 92 | 4 | 91 | 1.63e-14 | 68.6 |
| Msa1434490 | MtrunA17_Chr5g0438091 | 32.967 | 91 | 61 | 0 | 5 | 95 | 38 | 128 | 2.70e-14 | 69.7 |
| Msa1434490 | MtrunA17_Chr8g0374581 | 33.663 | 101 | 59 | 2 | 7 | 99 | 9 | 109 | 3.30e-14 | 70.1 |
| Msa1434490 | MtrunA17_Chr6g0452661 | 35.802 | 81 | 51 | 1 | 6 | 85 | 9 | 89 | 4.24e-14 | 70.1 |
| Msa1434490 | MtrunA17_Chr6g0460941 | 34.483 | 87 | 56 | 1 | 7 | 92 | 8 | 94 | 8.41e-14 | 65.9 |
| Msa1434490 | MtrunA17_Chr5g0435641 | 32.258 | 93 | 62 | 1 | 5 | 96 | 6 | 98 | 1.32e-13 | 67.8 |
| Msa1434490 | MtrunA17_Chr2g0330201 | 34.667 | 75 | 49 | 0 | 6 | 80 | 19 | 93 | 1.49e-13 | 69.3 |
| Msa1434490 | MtrunA17_Chr5g0444351 | 30.000 | 100 | 63 | 1 | 7 | 99 | 6 | 105 | 1.61e-13 | 66.2 |
| Msa1434490 | MtrunA17_Chr6g0460951 | 26.744 | 172 | 99 | 4 | 5 | 168 | 39 | 191 | 3.94e-13 | 67.0 |
| Msa1434490 | MtrunA17_Chr4g0059901 | 30.693 | 101 | 70 | 0 | 6 | 106 | 10 | 110 | 4.15e-13 | 67.8 |
| Msa1434490 | MtrunA17_Chr5g0432451 | 34.568 | 81 | 53 | 0 | 5 | 85 | 42 | 122 | 8.18e-13 | 66.2 |
| Msa1434490 | MtrunA17_Chr1g0184281 | 31.731 | 104 | 69 | 2 | 7 | 108 | 16 | 119 | 1.63e-12 | 65.1 |
| Msa1434490 | MtrunA17_Chr1g0184271 | 30.851 | 94 | 64 | 1 | 7 | 99 | 13 | 106 | 1.30e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434490 | AT1G06280.1 | 41.837 | 98 | 55 | 2 | 6 | 102 | 24 | 120 | 5.53e-23 | 94.0 |
| Msa1434490 | AT3G50510.1 | 37.895 | 95 | 59 | 0 | 5 | 99 | 11 | 105 | 9.59e-20 | 85.1 |
| Msa1434490 | AT3G50510.2 | 37.895 | 95 | 59 | 0 | 5 | 99 | 11 | 105 | 9.59e-20 | 85.1 |
| Msa1434490 | AT3G26660.1 | 32.773 | 119 | 79 | 1 | 2 | 120 | 1 | 118 | 1.57e-19 | 82.4 |
| Msa1434490 | AT3G26620.1 | 32.143 | 112 | 76 | 0 | 2 | 113 | 1 | 112 | 2.01e-19 | 82.0 |
| Msa1434490 | AT2G30130.1 | 38.043 | 92 | 57 | 0 | 5 | 96 | 7 | 98 | 2.74e-19 | 83.6 |
| Msa1434490 | AT1G16530.1 | 38.298 | 94 | 57 | 1 | 7 | 99 | 15 | 108 | 2.87e-18 | 80.1 |
| Msa1434490 | AT5G63090.4 | 35.789 | 95 | 61 | 0 | 5 | 99 | 10 | 104 | 5.79e-18 | 80.1 |
| Msa1434490 | AT5G63090.3 | 35.789 | 95 | 61 | 0 | 5 | 99 | 10 | 104 | 5.79e-18 | 80.1 |
| Msa1434490 | AT5G63090.2 | 35.789 | 95 | 61 | 0 | 5 | 99 | 10 | 104 | 5.79e-18 | 80.1 |
| Msa1434490 | AT5G63090.1 | 35.789 | 95 | 61 | 0 | 5 | 99 | 10 | 104 | 5.79e-18 | 80.1 |
| Msa1434490 | AT3G27650.1 | 34.043 | 94 | 62 | 0 | 7 | 100 | 40 | 133 | 2.60e-17 | 77.4 |
| Msa1434490 | AT1G31320.1 | 35.227 | 88 | 57 | 0 | 5 | 92 | 12 | 99 | 6.63e-16 | 73.9 |
| Msa1434490 | AT5G66870.1 | 29.032 | 124 | 78 | 1 | 3 | 116 | 4 | 127 | 1.05e-15 | 75.9 |
| Msa1434490 | AT1G72980.1 | 34.314 | 102 | 67 | 0 | 5 | 106 | 12 | 113 | 1.26e-15 | 74.3 |
| Msa1434490 | AT5G35900.1 | 30.065 | 153 | 90 | 5 | 2 | 152 | 1 | 138 | 1.29e-15 | 73.9 |
| Msa1434490 | AT3G13850.1 | 27.320 | 194 | 117 | 6 | 6 | 180 | 36 | 224 | 2.04e-15 | 74.7 |
| Msa1434490 | AT1G65620.1 | 31.356 | 118 | 65 | 2 | 5 | 106 | 8 | 125 | 2.32e-15 | 73.2 |
| Msa1434490 | AT1G65620.4 | 31.356 | 118 | 65 | 2 | 5 | 106 | 8 | 125 | 2.32e-15 | 73.2 |
| Msa1434490 | AT1G65620.3 | 31.356 | 118 | 65 | 2 | 5 | 106 | 8 | 125 | 2.32e-15 | 73.2 |
| Msa1434490 | AT1G65620.5 | 31.356 | 118 | 65 | 2 | 5 | 106 | 8 | 125 | 2.32e-15 | 73.2 |
| Msa1434490 | AT1G65620.2 | 31.356 | 118 | 65 | 2 | 5 | 106 | 8 | 125 | 2.32e-15 | 73.2 |
| Msa1434490 | AT2G30340.2 | 35.789 | 95 | 61 | 0 | 5 | 99 | 52 | 146 | 2.49e-15 | 74.3 |
| Msa1434490 | AT2G30340.1 | 35.789 | 95 | 61 | 0 | 5 | 99 | 51 | 145 | 3.12e-15 | 73.9 |
| Msa1434490 | AT3G11090.1 | 31.579 | 95 | 65 | 0 | 3 | 97 | 8 | 102 | 3.73e-15 | 71.6 |
| Msa1434490 | AT1G07900.1 | 33.684 | 95 | 63 | 0 | 7 | 101 | 34 | 128 | 4.59e-15 | 72.0 |
| Msa1434490 | AT3G47870.1 | 34.524 | 84 | 55 | 0 | 6 | 89 | 36 | 119 | 5.09e-15 | 74.3 |
| Msa1434490 | AT2G28500.1 | 33.684 | 95 | 63 | 0 | 7 | 101 | 56 | 150 | 7.01e-15 | 72.4 |
| Msa1434490 | AT2G23660.2 | 33.010 | 103 | 68 | 1 | 5 | 106 | 4 | 106 | 1.04e-14 | 73.2 |
| Msa1434490 | AT2G23660.3 | 33.010 | 103 | 68 | 1 | 5 | 106 | 4 | 106 | 1.04e-14 | 73.2 |
| Msa1434490 | AT2G23660.1 | 33.010 | 103 | 68 | 1 | 5 | 106 | 4 | 106 | 1.04e-14 | 73.2 |
| Msa1434490 | AT2G42430.1 | 24.599 | 187 | 128 | 5 | 7 | 185 | 16 | 197 | 1.05e-13 | 69.3 |
| Msa1434490 | AT2G40470.2 | 34.146 | 82 | 54 | 0 | 5 | 86 | 19 | 100 | 4.00e-13 | 67.0 |
| Msa1434490 | AT5G15060.1 | 35.366 | 82 | 49 | 2 | 7 | 86 | 18 | 97 | 4.27e-13 | 65.5 |
| Msa1434490 | AT2G40470.1 | 34.146 | 82 | 54 | 0 | 5 | 86 | 44 | 125 | 1.95e-12 | 65.5 |
| Msa1434490 | AT2G42440.1 | 29.474 | 95 | 66 | 1 | 7 | 100 | 8 | 102 | 4.06e-12 | 65.1 |
| Msa1434490 | AT2G19820.1 | 35.484 | 93 | 57 | 2 | 2 | 92 | 8 | 99 | 5.25e-12 | 62.0 |
| Msa1434490 | AT4G00220.1 | 31.868 | 91 | 61 | 1 | 10 | 99 | 21 | 111 | 1.11e-11 | 63.5 |
| Msa1434490 | AT3G03760.1 | 28.723 | 94 | 66 | 1 | 7 | 99 | 52 | 145 | 4.63e-11 | 62.4 |
| Msa1434490 | AT3G58190.1 | 27.119 | 177 | 120 | 4 | 7 | 180 | 12 | 182 | 4.84e-11 | 61.6 |
Find 51 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCTGACCCCAAATTTA+TGG | 0.119750 | tig0027531:-41566 | Msa1434490:CDS |
| TTGGGCAAGACCCATAAATT+TGG | 0.193828 | tig0027531:+41555 | None:intergenic |
| CATCCTAAGTATTATTCTTT+TGG | 0.211764 | tig0027531:-41196 | Msa1434490:CDS |
| TATTGAAAGAGAATGAATTT+TGG | 0.212393 | tig0027531:+41536 | None:intergenic |
| TTCTTCTTCGTTGGATAATA+AGG | 0.218223 | tig0027531:+41814 | None:intergenic |
| CAAAGTCTTGCAAGTAGTTC+TGG | 0.228500 | tig0027531:-41310 | Msa1434490:CDS |
| TCCATACGGATATTCAAAAT+AGG | 0.257950 | tig0027531:+41441 | None:intergenic |
| TCCCTGCCTTTGTCTCTTGT+TGG | 0.273999 | tig0027531:-41154 | Msa1434490:CDS |
| TGGGCAAGACCCATAAATTT+GGG | 0.299976 | tig0027531:+41556 | None:intergenic |
| TATTCTTGTTTCTTCTTCGT+TGG | 0.359515 | tig0027531:+41805 | None:intergenic |
| TCTTCTGACCCCAAATTTAT+GGG | 0.360429 | tig0027531:-41565 | Msa1434490:CDS |
| GTGATGCTAACAATGGAAAT+TGG | 0.377075 | tig0027531:-41513 | Msa1434490:CDS |
| TATTATGACCAATCAACATA+TGG | 0.380266 | tig0027531:-41242 | Msa1434490:CDS |
| TTATTGAACTGTGTTGTTGC+TGG | 0.391668 | tig0027531:-41370 | Msa1434490:CDS |
| TTGTATTCCCATATGTTGAT+TGG | 0.396164 | tig0027531:+41234 | None:intergenic |
| CCATACGGATATTCAAAATA+GGG | 0.399569 | tig0027531:+41442 | None:intergenic |
| GCACCAAGTGGACCATTGAT+TGG | 0.406811 | tig0027531:+41658 | None:intergenic |
| GCATTGTTGTTAGCCACAAA+AGG | 0.411788 | tig0027531:+41475 | None:intergenic |
| CCGTATGGAGGAAATAGCTT+TGG | 0.415315 | tig0027531:-41427 | Msa1434490:CDS |
| AAAGTCTTGCAAGTAGTTCT+GGG | 0.449359 | tig0027531:-41309 | Msa1434490:CDS |
| ATAAATTTGGGGTCAGAAGA+TGG | 0.471135 | tig0027531:+41568 | None:intergenic |
| CATTGTTGTTAGCCACAAAA+GGG | 0.471171 | tig0027531:+41476 | None:intergenic |
| TTTGGTGTTGTCGTTGGAGT+AGG | 0.480154 | tig0027531:+41596 | None:intergenic |
| TTGTTGCTGGTGCTAATGTT+TGG | 0.486568 | tig0027531:-41357 | Msa1434490:CDS |
| CACCAAGTGGACCATTGATT+GGG | 0.487901 | tig0027531:+41659 | None:intergenic |
| GGTCAGAAGATGGAACAGTT+TGG | 0.523150 | tig0027531:+41578 | None:intergenic |
| TGTCCAAAAGAATAATACTT+AGG | 0.524172 | tig0027531:+41193 | None:intergenic |
| TGCAAATAATTGTGTTGTGA+AGG | 0.524425 | tig0027531:+41331 | None:intergenic |
| GACCCAATCAATGGTCCACT+TGG | 0.526304 | tig0027531:-41661 | Msa1434490:CDS |
| TTCCAACAAGAGACAAAGGC+AGG | 0.528648 | tig0027531:+41152 | None:intergenic |
| GAACAGTTTGGTGTTGTCGT+TGG | 0.529232 | tig0027531:+41590 | None:intergenic |
| ATTATGACCAATCAACATAT+GGG | 0.537091 | tig0027531:-41241 | Msa1434490:CDS |
| TGGAAACAAGACCCAATCAA+TGG | 0.537301 | tig0027531:-41670 | Msa1434490:CDS |
| CCAAAGCTATTTCCTCCATA+CGG | 0.542651 | tig0027531:+41427 | None:intergenic |
| CTCAGAAACCTTGATGAACA+AGG | 0.552123 | tig0027531:-41736 | Msa1434490:CDS |
| TTCAATAGTGATGCTAACAA+TGG | 0.552245 | tig0027531:-41520 | Msa1434490:CDS |
| GGAAATAGCTTTGGAAGTGT+AGG | 0.563321 | tig0027531:-41418 | Msa1434490:CDS |
| TGTAGGTGCTTTGCAAAATG+AGG | 0.574107 | tig0027531:-41401 | Msa1434490:CDS |
| TTGATTGGGAAGCAAAGATG+TGG | 0.575226 | tig0027531:-41690 | Msa1434490:CDS |
| TTCCCAATCAAAAGACTCGA+TGG | 0.576338 | tig0027531:+41702 | None:intergenic |
| AATCAACATATGGGAATACA+AGG | 0.587851 | tig0027531:-41232 | Msa1434490:CDS |
| TCAATTCCAACAAGAGACAA+AGG | 0.608888 | tig0027531:+41148 | None:intergenic |
| TCGTTGGATAATAAGGAGCA+AGG | 0.613164 | tig0027531:+41821 | None:intergenic |
| GGGCAAGACCCATAAATTTG+GGG | 0.616540 | tig0027531:+41557 | None:intergenic |
| CATATGGGAATACAAGGAGA+AGG | 0.632124 | tig0027531:-41226 | Msa1434490:CDS |
| GCAGGGAAAAGAATGACTTA+CGG | 0.636274 | tig0027531:+41170 | None:intergenic |
| TCCAACAAGAGACAAAGGCA+GGG | 0.647739 | tig0027531:+41153 | None:intergenic |
| ATTGTTGTTAGCCACAAAAG+GGG | 0.649584 | tig0027531:+41477 | None:intergenic |
| TTCTGGGACTAACGTGACGG+TGG | 0.658470 | tig0027531:-41293 | Msa1434490:CDS |
| GCTTCAGTGAATGCACCAAG+TGG | 0.660474 | tig0027531:+41646 | None:intergenic |
| TAGTTCTGGGACTAACGTGA+CGG | 0.692517 | tig0027531:-41296 | Msa1434490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTGGTTACAAAAAAT+TGG | - | tig0027531:41215-41234 | Msa1434490:CDS | 20.0% |
| !!! | ATTGAAAGAGAATGAATTTT+GGG | + | tig0027531:41448-41467 | None:intergenic | 20.0% |
| !!! | TATTGAAAGAGAATGAATTT+TGG | + | tig0027531:41449-41468 | None:intergenic | 20.0% |
| !!! | AGTTTTTGGTTACAAAAAAT+TGG | - | tig0027531:41215-41234 | Msa1434490:CDS | 20.0% |
| !!! | ATTGAAAGAGAATGAATTTT+GGG | + | tig0027531:41448-41467 | None:intergenic | 20.0% |
| !!! | TATTGAAAGAGAATGAATTT+TGG | + | tig0027531:41449-41468 | None:intergenic | 20.0% |
| ! | TATTATGACCAATCAACATA+TGG | - | tig0027531:41740-41759 | Msa1434490:CDS | 25.0% |
| ! | ATTATGACCAATCAACATAT+GGG | - | tig0027531:41741-41760 | Msa1434490:CDS | 25.0% |
| !! | CATCCTAAGTATTATTCTTT+TGG | - | tig0027531:41786-41805 | Msa1434490:CDS | 25.0% |
| ! | TGTCCAAAAGAATAATACTT+AGG | + | tig0027531:41792-41811 | None:intergenic | 25.0% |
| ! | TATTATGACCAATCAACATA+TGG | - | tig0027531:41740-41759 | Msa1434490:CDS | 25.0% |
| ! | ATTATGACCAATCAACATAT+GGG | - | tig0027531:41741-41760 | Msa1434490:CDS | 25.0% |
| !! | CATCCTAAGTATTATTCTTT+TGG | - | tig0027531:41786-41805 | Msa1434490:CDS | 25.0% |
| ! | TGTCCAAAAGAATAATACTT+AGG | + | tig0027531:41792-41811 | None:intergenic | 25.0% |
| !!! | TTTTTCTTTTGGTGTCTACA+AGG | + | tig0027531:41123-41142 | None:intergenic | 30.0% |
| !!! | CTTTCATGCACTTTTTCTTT+TGG | + | tig0027531:41134-41153 | None:intergenic | 30.0% |
| TTCTTCTTCGTTGGATAATA+AGG | + | tig0027531:41171-41190 | None:intergenic | 30.0% | |
| ! | TATTCTTGTTTCTTCTTCGT+TGG | + | tig0027531:41180-41199 | None:intergenic | 30.0% |
| AACCAAAAACTTTGTGAACA+AGG | + | tig0027531:41206-41225 | None:intergenic | 30.0% | |
| ! | TTTTTCTTCCTTGTTCATCA+AGG | + | tig0027531:41257-41276 | None:intergenic | 30.0% |
| TTCAATAGTGATGCTAACAA+TGG | - | tig0027531:41462-41481 | Msa1434490:CDS | 30.0% | |
| CCATACGGATATTCAAAATA+GGG | + | tig0027531:41543-41562 | None:intergenic | 30.0% | |
| TCCATACGGATATTCAAAAT+AGG | + | tig0027531:41544-41563 | None:intergenic | 30.0% | |
| !! | TATTTTGAATATCCGTATGG+AGG | - | tig0027531:41543-41562 | Msa1434490:CDS | 30.0% |
| TGCAAATAATTGTGTTGTGA+AGG | + | tig0027531:41654-41673 | None:intergenic | 30.0% | |
| TTGTATTCCCATATGTTGAT+TGG | + | tig0027531:41751-41770 | None:intergenic | 30.0% | |
| AATCAACATATGGGAATACA+AGG | - | tig0027531:41750-41769 | Msa1434490:CDS | 30.0% | |
| ! | TATTTGTGCACCATTTTCTT+TGG | - | tig0027531:41857-41876 | Msa1434490:CDS | 30.0% |
| GAAAAAGATGCCAAAGAAAA+TGG | + | tig0027531:41870-41889 | None:intergenic | 30.0% | |
| !!! | TTTTTCTTTTGGTGTCTACA+AGG | + | tig0027531:41123-41142 | None:intergenic | 30.0% |
| !!! | CTTTCATGCACTTTTTCTTT+TGG | + | tig0027531:41134-41153 | None:intergenic | 30.0% |
| TTCTTCTTCGTTGGATAATA+AGG | + | tig0027531:41171-41190 | None:intergenic | 30.0% | |
| ! | TATTCTTGTTTCTTCTTCGT+TGG | + | tig0027531:41180-41199 | None:intergenic | 30.0% |
| AACCAAAAACTTTGTGAACA+AGG | + | tig0027531:41206-41225 | None:intergenic | 30.0% | |
| ! | TTTTTCTTCCTTGTTCATCA+AGG | + | tig0027531:41257-41276 | None:intergenic | 30.0% |
| TTCAATAGTGATGCTAACAA+TGG | - | tig0027531:41462-41481 | Msa1434490:CDS | 30.0% | |
| CCATACGGATATTCAAAATA+GGG | + | tig0027531:41543-41562 | None:intergenic | 30.0% | |
| TCCATACGGATATTCAAAAT+AGG | + | tig0027531:41544-41563 | None:intergenic | 30.0% | |
| !! | TATTTTGAATATCCGTATGG+AGG | - | tig0027531:41543-41562 | Msa1434490:CDS | 30.0% |
| TGCAAATAATTGTGTTGTGA+AGG | + | tig0027531:41654-41673 | None:intergenic | 30.0% | |
| TTGTATTCCCATATGTTGAT+TGG | + | tig0027531:41751-41770 | None:intergenic | 30.0% | |
| AATCAACATATGGGAATACA+AGG | - | tig0027531:41750-41769 | Msa1434490:CDS | 30.0% | |
| ! | TATTTGTGCACCATTTTCTT+TGG | - | tig0027531:41857-41876 | Msa1434490:CDS | 30.0% |
| GAAAAAGATGCCAAAGAAAA+TGG | + | tig0027531:41870-41889 | None:intergenic | 30.0% | |
| ! | GACCTTGTTCACAAAGTTTT+TGG | - | tig0027531:41201-41220 | Msa1434490:CDS | 35.0% |
| ! | ATAAATTTGGGGTCAGAAGA+TGG | + | tig0027531:41417-41436 | None:intergenic | 35.0% |
| ATCTTCTGACCCCAAATTTA+TGG | - | tig0027531:41416-41435 | Msa1434490:CDS | 35.0% | |
| TCTTCTGACCCCAAATTTAT+GGG | - | tig0027531:41417-41436 | Msa1434490:CDS | 35.0% | |
| GTGATGCTAACAATGGAAAT+TGG | - | tig0027531:41469-41488 | Msa1434490:CDS | 35.0% | |
| !!! | TGGAAATTGGTCTTCTTTTG+AGG | - | tig0027531:41482-41501 | Msa1434490:CDS | 35.0% |
| ! | ATTGTTGTTAGCCACAAAAG+GGG | + | tig0027531:41508-41527 | None:intergenic | 35.0% |
| ! | CATTGTTGTTAGCCACAAAA+GGG | + | tig0027531:41509-41528 | None:intergenic | 35.0% |
| !! | CCCTATTTTGAATATCCGTA+TGG | - | tig0027531:41540-41559 | Msa1434490:CDS | 35.0% |
| ! | TTATTGAACTGTGTTGTTGC+TGG | - | tig0027531:41612-41631 | Msa1434490:CDS | 35.0% |
| AAAGTCTTGCAAGTAGTTCT+GGG | - | tig0027531:41673-41692 | Msa1434490:CDS | 35.0% | |
| TCAATTCCAACAAGAGACAA+AGG | + | tig0027531:41837-41856 | None:intergenic | 35.0% | |
| ! | GACCTTGTTCACAAAGTTTT+TGG | - | tig0027531:41201-41220 | Msa1434490:CDS | 35.0% |
| ! | ATAAATTTGGGGTCAGAAGA+TGG | + | tig0027531:41417-41436 | None:intergenic | 35.0% |
| ATCTTCTGACCCCAAATTTA+TGG | - | tig0027531:41416-41435 | Msa1434490:CDS | 35.0% | |
| TCTTCTGACCCCAAATTTAT+GGG | - | tig0027531:41417-41436 | Msa1434490:CDS | 35.0% | |
| GTGATGCTAACAATGGAAAT+TGG | - | tig0027531:41469-41488 | Msa1434490:CDS | 35.0% | |
| !!! | TGGAAATTGGTCTTCTTTTG+AGG | - | tig0027531:41482-41501 | Msa1434490:CDS | 35.0% |
| ! | ATTGTTGTTAGCCACAAAAG+GGG | + | tig0027531:41508-41527 | None:intergenic | 35.0% |
| ! | CATTGTTGTTAGCCACAAAA+GGG | + | tig0027531:41509-41528 | None:intergenic | 35.0% |
| !! | CCCTATTTTGAATATCCGTA+TGG | - | tig0027531:41540-41559 | Msa1434490:CDS | 35.0% |
| ! | TTATTGAACTGTGTTGTTGC+TGG | - | tig0027531:41612-41631 | Msa1434490:CDS | 35.0% |
| AAAGTCTTGCAAGTAGTTCT+GGG | - | tig0027531:41673-41692 | Msa1434490:CDS | 35.0% | |
| TCAATTCCAACAAGAGACAA+AGG | + | tig0027531:41837-41856 | None:intergenic | 35.0% | |
| TCGTTGGATAATAAGGAGCA+AGG | + | tig0027531:41164-41183 | None:intergenic | 40.0% | |
| CTCAGAAACCTTGATGAACA+AGG | - | tig0027531:41246-41265 | Msa1434490:CDS | 40.0% | |
| ! | AAGCCATCGAGTCTTTTGAT+TGG | - | tig0027531:41277-41296 | Msa1434490:CDS | 40.0% |
| !! | AGCCATCGAGTCTTTTGATT+GGG | - | tig0027531:41278-41297 | Msa1434490:CDS | 40.0% |
| TTCCCAATCAAAAGACTCGA+TGG | + | tig0027531:41283-41302 | None:intergenic | 40.0% | |
| TTGATTGGGAAGCAAAGATG+TGG | - | tig0027531:41292-41311 | Msa1434490:CDS | 40.0% | |
| TGGAAACAAGACCCAATCAA+TGG | - | tig0027531:41312-41331 | Msa1434490:CDS | 40.0% | |
| TGGGCAAGACCCATAAATTT+GGG | + | tig0027531:41429-41448 | None:intergenic | 40.0% | |
| TTGGGCAAGACCCATAAATT+TGG | + | tig0027531:41430-41449 | None:intergenic | 40.0% | |
| ! | GCATTGTTGTTAGCCACAAA+AGG | + | tig0027531:41510-41529 | None:intergenic | 40.0% |
| ! | CCAAAGCTATTTCCTCCATA+CGG | + | tig0027531:41558-41577 | None:intergenic | 40.0% |
| !! | GGAAATAGCTTTGGAAGTGT+AGG | - | tig0027531:41564-41583 | Msa1434490:CDS | 40.0% |
| TGTAGGTGCTTTGCAAAATG+AGG | - | tig0027531:41581-41600 | Msa1434490:CDS | 40.0% | |
| ! | TTGTTGCTGGTGCTAATGTT+TGG | - | tig0027531:41625-41644 | Msa1434490:CDS | 40.0% |
| CAAAGTCTTGCAAGTAGTTC+TGG | - | tig0027531:41672-41691 | Msa1434490:CDS | 40.0% | |
| CATATGGGAATACAAGGAGA+AGG | - | tig0027531:41756-41775 | Msa1434490:CDS | 40.0% | |
| GCAGGGAAAAGAATGACTTA+CGG | + | tig0027531:41815-41834 | None:intergenic | 40.0% | |
| TCGTTGGATAATAAGGAGCA+AGG | + | tig0027531:41164-41183 | None:intergenic | 40.0% | |
| CTCAGAAACCTTGATGAACA+AGG | - | tig0027531:41246-41265 | Msa1434490:CDS | 40.0% | |
| ! | AAGCCATCGAGTCTTTTGAT+TGG | - | tig0027531:41277-41296 | Msa1434490:CDS | 40.0% |
| !! | AGCCATCGAGTCTTTTGATT+GGG | - | tig0027531:41278-41297 | Msa1434490:CDS | 40.0% |
| TTCCCAATCAAAAGACTCGA+TGG | + | tig0027531:41283-41302 | None:intergenic | 40.0% | |
| TTGATTGGGAAGCAAAGATG+TGG | - | tig0027531:41292-41311 | Msa1434490:CDS | 40.0% | |
| TGGAAACAAGACCCAATCAA+TGG | - | tig0027531:41312-41331 | Msa1434490:CDS | 40.0% | |
| TGGGCAAGACCCATAAATTT+GGG | + | tig0027531:41429-41448 | None:intergenic | 40.0% | |
| TTGGGCAAGACCCATAAATT+TGG | + | tig0027531:41430-41449 | None:intergenic | 40.0% | |
| ! | GCATTGTTGTTAGCCACAAA+AGG | + | tig0027531:41510-41529 | None:intergenic | 40.0% |
| ! | CCAAAGCTATTTCCTCCATA+CGG | + | tig0027531:41558-41577 | None:intergenic | 40.0% |
| !! | GGAAATAGCTTTGGAAGTGT+AGG | - | tig0027531:41564-41583 | Msa1434490:CDS | 40.0% |
| TGTAGGTGCTTTGCAAAATG+AGG | - | tig0027531:41581-41600 | Msa1434490:CDS | 40.0% | |
| ! | TTGTTGCTGGTGCTAATGTT+TGG | - | tig0027531:41625-41644 | Msa1434490:CDS | 40.0% |
| CAAAGTCTTGCAAGTAGTTC+TGG | - | tig0027531:41672-41691 | Msa1434490:CDS | 40.0% | |
| CATATGGGAATACAAGGAGA+AGG | - | tig0027531:41756-41775 | Msa1434490:CDS | 40.0% | |
| GCAGGGAAAAGAATGACTTA+CGG | + | tig0027531:41815-41834 | None:intergenic | 40.0% | |
| ! | CACCAAGTGGACCATTGATT+GGG | + | tig0027531:41326-41345 | None:intergenic | 45.0% |
| !! | TTTGGTGTTGTCGTTGGAGT+AGG | + | tig0027531:41389-41408 | None:intergenic | 45.0% |
| !! | GAACAGTTTGGTGTTGTCGT+TGG | + | tig0027531:41395-41414 | None:intergenic | 45.0% |
| GGTCAGAAGATGGAACAGTT+TGG | + | tig0027531:41407-41426 | None:intergenic | 45.0% | |
| GGGCAAGACCCATAAATTTG+GGG | + | tig0027531:41428-41447 | None:intergenic | 45.0% | |
| !!! | TTCTTTTGAGGCCCCTTTTG+TGG | - | tig0027531:41494-41513 | Msa1434490:CDS | 45.0% |
| CCGTATGGAGGAAATAGCTT+TGG | - | tig0027531:41555-41574 | Msa1434490:CDS | 45.0% | |
| !! | TAGTTCTGGGACTAACGTGA+CGG | - | tig0027531:41686-41705 | Msa1434490:CDS | 45.0% |
| TCCAACAAGAGACAAAGGCA+GGG | + | tig0027531:41832-41851 | None:intergenic | 45.0% | |
| TTCCAACAAGAGACAAAGGC+AGG | + | tig0027531:41833-41852 | None:intergenic | 45.0% | |
| ! | CACCAAGTGGACCATTGATT+GGG | + | tig0027531:41326-41345 | None:intergenic | 45.0% |
| !! | TTTGGTGTTGTCGTTGGAGT+AGG | + | tig0027531:41389-41408 | None:intergenic | 45.0% |
| !! | GAACAGTTTGGTGTTGTCGT+TGG | + | tig0027531:41395-41414 | None:intergenic | 45.0% |
| GGTCAGAAGATGGAACAGTT+TGG | + | tig0027531:41407-41426 | None:intergenic | 45.0% | |
| GGGCAAGACCCATAAATTTG+GGG | + | tig0027531:41428-41447 | None:intergenic | 45.0% | |
| !!! | TTCTTTTGAGGCCCCTTTTG+TGG | - | tig0027531:41494-41513 | Msa1434490:CDS | 45.0% |
| CCGTATGGAGGAAATAGCTT+TGG | - | tig0027531:41555-41574 | Msa1434490:CDS | 45.0% | |
| !! | TAGTTCTGGGACTAACGTGA+CGG | - | tig0027531:41686-41705 | Msa1434490:CDS | 45.0% |
| TCCAACAAGAGACAAAGGCA+GGG | + | tig0027531:41832-41851 | None:intergenic | 45.0% | |
| TTCCAACAAGAGACAAAGGC+AGG | + | tig0027531:41833-41852 | None:intergenic | 45.0% | |
| GACCCAATCAATGGTCCACT+TGG | - | tig0027531:41321-41340 | Msa1434490:CDS | 50.0% | |
| GCACCAAGTGGACCATTGAT+TGG | + | tig0027531:41327-41346 | None:intergenic | 50.0% | |
| GCTTCAGTGAATGCACCAAG+TGG | + | tig0027531:41339-41358 | None:intergenic | 50.0% | |
| TCCCTGCCTTTGTCTCTTGT+TGG | - | tig0027531:41828-41847 | Msa1434490:CDS | 50.0% | |
| GACCCAATCAATGGTCCACT+TGG | - | tig0027531:41321-41340 | Msa1434490:CDS | 50.0% | |
| GCACCAAGTGGACCATTGAT+TGG | + | tig0027531:41327-41346 | None:intergenic | 50.0% | |
| GCTTCAGTGAATGCACCAAG+TGG | + | tig0027531:41339-41358 | None:intergenic | 50.0% | |
| TCCCTGCCTTTGTCTCTTGT+TGG | - | tig0027531:41828-41847 | Msa1434490:CDS | 50.0% | |
| !! | TTCTGGGACTAACGTGACGG+TGG | - | tig0027531:41689-41708 | Msa1434490:CDS | 55.0% |
| !! | TTCTGGGACTAACGTGACGG+TGG | - | tig0027531:41689-41708 | Msa1434490:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027531 | gene | 41096 | 41908 | 41096 | ID=Msa1434490;Name=Msa1434490 |
| tig0027531 | mRNA | 41096 | 41908 | 41096 | ID=Msa1434490-mRNA-1;Parent=Msa1434490;Name=Msa1434490-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|270 |
| tig0027531 | exon | 41096 | 41908 | 41096 | ID=Msa1434490-mRNA-1:exon:9211;Parent=Msa1434490-mRNA-1 |
| tig0027531 | CDS | 41096 | 41908 | 41096 | ID=Msa1434490-mRNA-1:cds;Parent=Msa1434490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
