Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435330 | XP_039683260.1 | 98.742 | 159 | 2 | 0 | 1 | 159 | 44 | 202 | 9.01e-110 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435330 | A0A2K3JN18 | 76.730 | 159 | 37 | 0 | 1 | 159 | 42 | 200 | 8.18e-84 | 265 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1435330 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435330 | MtrunA17_Chr6g0451441 | 67.500 | 160 | 50 | 1 | 1 | 160 | 97 | 254 | 9.73e-72 | 230 |
| Msa1435330 | MtrunA17_Chr5g0441581 | 63.522 | 159 | 50 | 1 | 1 | 159 | 42 | 192 | 6.25e-62 | 209 |
| Msa1435330 | MtrunA17_Chr5g0441581 | 66.400 | 125 | 37 | 2 | 155 | 277 | 559 | 680 | 1.89e-46 | 167 |
| Msa1435330 | MtrunA17_Chr2g0296781 | 36.747 | 166 | 101 | 2 | 2 | 164 | 8 | 172 | 3.50e-29 | 118 |
| Msa1435330 | MtrunA17_Chr2g0296781 | 33.582 | 134 | 82 | 2 | 154 | 287 | 534 | 660 | 1.27e-14 | 75.1 |
| Msa1435330 | MtrunA17_Chr1g0172041 | 62.295 | 61 | 23 | 0 | 144 | 204 | 53 | 113 | 3.73e-19 | 82.0 |
| Msa1435330 | MtrunA17_Chr1g0196541 | 31.169 | 154 | 105 | 1 | 1 | 154 | 7 | 159 | 8.90e-16 | 78.6 |
| Msa1435330 | MtrunA17_Chr6g0476441 | 34.959 | 123 | 76 | 1 | 165 | 287 | 47 | 165 | 1.07e-15 | 76.6 |
| Msa1435330 | MtrunA17_Chr6g0477261 | 34.146 | 123 | 77 | 1 | 165 | 287 | 431 | 549 | 3.68e-13 | 70.5 |
| Msa1435330 | MtrunA17_Chr2g0324011 | 32.075 | 159 | 101 | 4 | 1 | 154 | 20 | 176 | 3.83e-13 | 70.5 |
| Msa1435330 | MtrunA17_Chr7g0258861 | 28.481 | 158 | 109 | 3 | 1 | 154 | 20 | 177 | 1.02e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTGTTGGTACTGTTGC+AGG | 0.207318 | tig0027699:+2721 | Msa1435330:CDS |
| TCCTCTGCCATCACTCTGTT+TGG | 0.267068 | tig0027699:-1996 | None:intergenic |
| CTCTGTTTGGGTCGTTTACT+TGG | 0.269797 | tig0027699:-1983 | None:intergenic |
| GTTGGTACTGTTGCAGGTTT+AGG | 0.289872 | tig0027699:+2727 | Msa1435330:CDS |
| TTTCAGCTGGGCAGTTTGTT+TGG | 0.307352 | tig0027699:+2794 | Msa1435330:CDS |
| TGAATTTCAGTACCATTGTT+TGG | 0.350297 | tig0027699:-1881 | None:intergenic |
| TTCAGCTGGGCAGTTTGTTT+GGG | 0.376276 | tig0027699:+2795 | Msa1435330:CDS |
| CAAACTGATGTAAAATTTCA+TGG | 0.386961 | tig0027699:-1790 | None:intergenic |
| TTAGCTGTTAATGTTTCAGC+TGG | 0.388156 | tig0027699:+2781 | Msa1435330:CDS |
| CCTCTGCCATCACTCTGTTT+GGG | 0.390417 | tig0027699:-1995 | None:intergenic |
| GTTGCAGGTTTAGGTGCAGC+TGG | 0.400939 | tig0027699:+2736 | Msa1435330:CDS |
| TTGTCAAACCTATCCATTTG+TGG | 0.404915 | tig0027699:-1701 | None:intergenic |
| TGAAATTCACAGTCCATTGC+GGG | 0.405577 | tig0027699:+1895 | Msa1435330:CDS |
| ACCTGCTAACAGCAGAAAAC+TGG | 0.405659 | tig0027699:-2832 | None:intergenic |
| CTAGCTAAAACATACTTCTC+TGG | 0.469006 | tig0027699:-1611 | None:intergenic |
| TTTCTTGCCTAGCTTCCTGT+TGG | 0.472292 | tig0027699:+2709 | Msa1435330:intron |
| CCTTTACGTTTAACCCGCAA+TGG | 0.484773 | tig0027699:-1908 | None:intergenic |
| AGAGTTTGAAGACACATCTA+AGG | 0.494136 | tig0027699:+1763 | Msa1435330:CDS |
| GACACAATTGAAGCCACAAA+TGG | 0.499877 | tig0027699:+1688 | Msa1435330:CDS |
| AAACCTGCAACAGTACCAAC+AGG | 0.514664 | tig0027699:-2724 | None:intergenic |
| TTGCAGGTTTAGGTGCAGCT+GGG | 0.530522 | tig0027699:+2737 | Msa1435330:CDS |
| AATTGAAGCCACAAATGGAT+AGG | 0.557924 | tig0027699:+1693 | Msa1435330:CDS |
| CCATTGCGGGTTAAACGTAA+AGG | 0.562059 | tig0027699:+1908 | Msa1435330:CDS |
| AATGTTAAAAGAAGTTTCAA+CGG | 0.562597 | tig0027699:+1848 | Msa1435330:CDS |
| TTCAGTTGTAGCATTCCTGG+TGG | 0.569900 | tig0027699:-1825 | None:intergenic |
| CTGAAATTCACAGTCCATTG+CGG | 0.572293 | tig0027699:+1894 | Msa1435330:CDS |
| TAGCTGTTAATGTTTCAGCT+GGG | 0.589100 | tig0027699:+2782 | Msa1435330:CDS |
| CTACGAGGTTGCTGAAGTAG+CGG | 0.610192 | tig0027699:+1739 | Msa1435330:CDS |
| TTGCTTCTGATTTACCCACC+AGG | 0.625219 | tig0027699:+1810 | Msa1435330:CDS |
| AAACGACCCAAACAGAGTGA+TGG | 0.635641 | tig0027699:+1989 | Msa1435330:CDS |
| TCAGTTGTAGCATTCCTGGT+GGG | 0.641081 | tig0027699:-1824 | None:intergenic |
| CCCAAACAGAGTGATGGCAG+AGG | 0.668001 | tig0027699:+1995 | Msa1435330:CDS |
| GGTGACTCAAATCCAAACAA+TGG | 0.688893 | tig0027699:+1869 | Msa1435330:CDS |
| GTTATGCAAGCATTTCTACG+AGG | 0.708830 | tig0027699:+1724 | Msa1435330:CDS |
| ACTGATGTAAAATTTCATGG+AGG | 0.730170 | tig0027699:-1787 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTCTTAAGAAAATATTTTT+GGG | + | tig0027699:1106-1125 | Msa1435330:intron | 15.0% |
| !! | GATGGAATAAAAATATTAAA+CGG | + | tig0027699:1633-1652 | Msa1435330:CDS | 15.0% |
| !!! | AACAATGATATTGTATTTTT+TGG | + | tig0027699:2322-2341 | Msa1435330:intron | 15.0% |
| !! | TTGACAAAAATAGTTTATCA+AGG | - | tig0027699:497-516 | None:intergenic | 20.0% |
| !!! | TAAACTATTTTTGTCAAATG+AGG | + | tig0027699:500-519 | Msa1435330:intron | 20.0% |
| !! | TCTATTTCATAGAAGAAATT+TGG | - | tig0027699:534-553 | None:intergenic | 20.0% |
| !! | TTTCTTCTATGAAATAGATT+TGG | + | tig0027699:536-555 | Msa1435330:intron | 20.0% |
| !!! | AAATATTTTCTTAAGAAGGT+TGG | - | tig0027699:1104-1123 | None:intergenic | 20.0% |
| !!! | CCAAAAATATTTTCTTAAGA+AGG | - | tig0027699:1108-1127 | None:intergenic | 20.0% |
| !!! | CCTTCTTAAGAAAATATTTT+TGG | + | tig0027699:1105-1124 | Msa1435330:intron | 20.0% |
| !! | AATGTTAAAAGAAGTTTCAA+CGG | + | tig0027699:1848-1867 | Msa1435330:CDS | 20.0% |
| !!! | TTGACAACTCTAATATTTTT+TGG | + | tig0027699:2230-2249 | Msa1435330:intron | 20.0% |
| !!! | AATGATATTGTATTTTTTGG+TGG | + | tig0027699:2325-2344 | Msa1435330:intron | 20.0% |
| !! | CTATACATAGTAATGAATTT+CGG | + | tig0027699:2369-2388 | Msa1435330:intron | 20.0% |
| !!! | AATTTCGGCTTTTTTTTTTT+GGG | + | tig0027699:2384-2403 | Msa1435330:intron | 20.0% |
| !! | ATGTTTGTAAAGTTAACATT+AGG | + | tig0027699:2423-2442 | Msa1435330:intron | 20.0% |
| !! | ACTTATCGATGAAATATTAT+AGG | + | tig0027699:2597-2616 | Msa1435330:intron | 20.0% |
| !!! | TTGTATGGCTTTTTAATTCA+TGG | + | tig0027699:766-785 | Msa1435330:intron | 25.0% |
| !!! | TAGATGATTTTGAAGAGAAA+TGG | + | tig0027699:1000-1019 | Msa1435330:intron | 25.0% |
| !!! | AAGCTCAAATTTTTCAATGA+AGG | - | tig0027699:1030-1049 | None:intergenic | 25.0% |
| !!! | TTAAGAAAATATTTTTGGGC+CGG | + | tig0027699:1110-1129 | Msa1435330:intron | 25.0% |
| ! | GTATACTCATGCTAAATTTA+AGG | + | tig0027699:1340-1359 | Msa1435330:intron | 25.0% |
| !!! | AATTTAGAGGTATTTTGTGT+CGG | + | tig0027699:1546-1565 | Msa1435330:intron | 25.0% |
| ! | CAAACTGATGTAAAATTTCA+TGG | - | tig0027699:1793-1812 | None:intergenic | 25.0% |
| !! | ACATTTTTCTTTTTGATGGA+GGG | - | tig0027699:1937-1956 | None:intergenic | 25.0% |
| !! | ACAGACATTTTTCTTTTTGA+TGG | - | tig0027699:1941-1960 | None:intergenic | 25.0% |
| ! | TTGTAATCACCATGTATATA+TGG | + | tig0027699:2050-2069 | Msa1435330:intron | 25.0% |
| ! | ATGCAATATCCATATATACA+TGG | - | tig0027699:2062-2081 | None:intergenic | 25.0% |
| !! | TCTTGTTATATACACACAAA+AGG | - | tig0027699:2295-2314 | None:intergenic | 25.0% |
| !!! | GAATTTCGGCTTTTTTTTTT+TGG | + | tig0027699:2383-2402 | Msa1435330:intron | 25.0% |
| ! | TATTTCATCGATAAGTTGTA+TGG | - | tig0027699:2593-2612 | None:intergenic | 25.0% |
| !!! | TTCTGTTTTTCTTGTTAGAA+AGG | + | tig0027699:2668-2687 | Msa1435330:intron | 25.0% |
| !! | TAGAGAATATGCTTTGAGAA+AGG | + | tig0027699:24-43 | Msa1435330:CDS | 30.0% |
| !! | AGAGAATATGCTTTGAGAAA+GGG | + | tig0027699:25-44 | Msa1435330:CDS | 30.0% |
| AAGATTAGAACATCGAGAAA+AGG | + | tig0027699:58-77 | Msa1435330:CDS | 30.0% | |
| AACTTGATACAAATCTTAGC+AGG | - | tig0027699:193-212 | None:intergenic | 30.0% | |
| ! | ATTCAAATCAATGATGATGC+AGG | + | tig0027699:334-353 | Msa1435330:CDS | 30.0% |
| CTCACATCTCTTTCATTAAA+TGG | - | tig0027699:421-440 | None:intergenic | 30.0% | |
| CATTTAATGAAAGAGATGTG+AGG | + | tig0027699:419-438 | Msa1435330:CDS | 30.0% | |
| TGTGAGGAATTATGTTAACA+AGG | + | tig0027699:435-454 | Msa1435330:CDS | 30.0% | |
| ! | TTCATGTAAGGAATGTCTTT+TGG | + | tig0027699:568-587 | Msa1435330:intron | 30.0% |
| ! | TCATGTAAGGAATGTCTTTT+GGG | + | tig0027699:569-588 | Msa1435330:intron | 30.0% |
| AATCAACATTACTTGGATGT+GGG | + | tig0027699:715-734 | Msa1435330:intron | 30.0% | |
| AAGACAAAGAGTCATTTGTA+TGG | + | tig0027699:751-770 | Msa1435330:intron | 30.0% | |
| AAAATTGCTGAAAAACTCAG+CGG | + | tig0027699:915-934 | Msa1435330:intron | 30.0% | |
| TTGAGCTTCAACAAAATCAT+TGG | + | tig0027699:1042-1061 | Msa1435330:intron | 30.0% | |
| TGTATAACGAACGTCATAAA+TGG | + | tig0027699:1075-1094 | Msa1435330:intron | 30.0% | |
| GTATAACGAACGTCATAAAT+GGG | + | tig0027699:1076-1095 | Msa1435330:intron | 30.0% | |
| ! | ATTCTTTTTATGCTCGACTT+CGG | - | tig0027699:1241-1260 | None:intergenic | 30.0% |
| ATGAATACCACAATTTCTTG+CGG | + | tig0027699:1281-1300 | Msa1435330:intron | 30.0% | |
| TCAATTGAAAAGCAATTCCA+AGG | + | tig0027699:1314-1333 | Msa1435330:intron | 30.0% | |
| TACTCATGCTAAATTTAAGG+AGG | + | tig0027699:1343-1362 | Msa1435330:intron | 30.0% | |
| TGCTTATTCATTGAACATTG+TGG | + | tig0027699:1397-1416 | Msa1435330:intron | 30.0% | |
| TTATTCATTGAACATTGTGG+AGG | + | tig0027699:1400-1419 | Msa1435330:intron | 30.0% | |
| TATTCATTGAACATTGTGGA+GGG | + | tig0027699:1401-1420 | Msa1435330:intron | 30.0% | |
| TGCTCATTGTTTGAATTTAG+AGG | + | tig0027699:1533-1552 | Msa1435330:intron | 30.0% | |
| !!! | AGAAGTATGTTTTAGCTAGA+TGG | + | tig0027699:1615-1634 | Msa1435330:CDS | 30.0% |
| ACTGATGTAAAATTTCATGG+AGG | - | tig0027699:1790-1809 | None:intergenic | 30.0% | |
| TGAATTTCAGTACCATTGTT+TGG | - | tig0027699:1884-1903 | None:intergenic | 30.0% | |
| ! | GACATTTTTCTTTTTGATGG+AGG | - | tig0027699:1938-1957 | None:intergenic | 30.0% |
| !! | GAATTGGTGTCATACAAATT+TGG | - | tig0027699:2102-2121 | None:intergenic | 30.0% |
| ! | ATTTGTCACTCTTTGAGAAT+TGG | - | tig0027699:2118-2137 | None:intergenic | 30.0% |
| TTTGTGTACTTAATCAACCA+TGG | + | tig0027699:2482-2501 | Msa1435330:intron | 30.0% | |
| TACTTAATCAACCATGGAAA+TGG | + | tig0027699:2488-2507 | Msa1435330:intron | 30.0% | |
| GTGTGTCTTGTATCATTATA+AGG | + | tig0027699:2632-2651 | Msa1435330:intron | 30.0% | |
| ! | GTTTTTCTTGTTAGAAAGGA+AGG | + | tig0027699:2672-2691 | Msa1435330:intron | 30.0% |
| !! | CTTTGAGAAAGGGTTTTGAT+TGG | + | tig0027699:35-54 | Msa1435330:CDS | 35.0% |
| ACATCGAGAAAAGGAAATGA+TGG | + | tig0027699:67-86 | Msa1435330:CDS | 35.0% | |
| CATCGAGAAAAGGAAATGAT+GGG | + | tig0027699:68-87 | Msa1435330:CDS | 35.0% | |
| ATCGAGAAAAGGAAATGATG+GGG | + | tig0027699:69-88 | Msa1435330:CDS | 35.0% | |
| !! | TGTATCAAGTTGAAAGCAGA+TGG | + | tig0027699:202-221 | Msa1435330:CDS | 35.0% |
| GTTCAAGGCTAACAAGAATA+TGG | + | tig0027699:291-310 | Msa1435330:CDS | 35.0% | |
| CAATCTCTTGTTAAAGATGC+AGG | + | tig0027699:379-398 | Msa1435330:CDS | 35.0% | |
| ! | TGGATGACGATTTTCATGTA+AGG | + | tig0027699:556-575 | Msa1435330:intron | 35.0% |
| !!! | ATGCCTTTTGCTGTTTTTGT+TGG | + | tig0027699:675-694 | Msa1435330:intron | 35.0% |
| ACACCAACAAAAACAGCAAA+AGG | - | tig0027699:681-700 | None:intergenic | 35.0% | |
| ! | CAAGTAATGTTGATTGACCA+TGG | - | tig0027699:710-729 | None:intergenic | 35.0% |
| CATGGTCAATCAACATTACT+TGG | + | tig0027699:708-727 | Msa1435330:intron | 35.0% | |
| CAATCAACATTACTTGGATG+TGG | + | tig0027699:714-733 | Msa1435330:intron | 35.0% | |
| TATTGTGACTGACCAATGTA+AGG | + | tig0027699:821-840 | Msa1435330:intron | 35.0% | |
| ! | CATTTTGCATTGCCTTACAT+TGG | - | tig0027699:836-855 | None:intergenic | 35.0% |
| AAATTGCTGAAAAACTCAGC+GGG | + | tig0027699:916-935 | Msa1435330:intron | 35.0% | |
| ! | CAACAAAATCATTGGTTGAC+TGG | + | tig0027699:1050-1069 | Msa1435330:intron | 35.0% |
| AGTATACACGCTTTCTTTGA+TGG | + | tig0027699:1158-1177 | Msa1435330:intron | 35.0% | |
| TGAATACCACAATTTCTTGC+GGG | + | tig0027699:1282-1301 | Msa1435330:intron | 35.0% | |
| CTAGCTAAAACATACTTCTC+TGG | - | tig0027699:1614-1633 | None:intergenic | 35.0% | |
| AATTGAAGCCACAAATGGAT+AGG | + | tig0027699:1693-1712 | Msa1435330:CDS | 35.0% | |
| TTGTCAAACCTATCCATTTG+TGG | - | tig0027699:1704-1723 | None:intergenic | 35.0% | |
| AGAGTTTGAAGACACATCTA+AGG | + | tig0027699:1763-1782 | Msa1435330:CDS | 35.0% | |
| ! | ATTTTCAGTTGTAGCATTCC+TGG | - | tig0027699:1831-1850 | None:intergenic | 35.0% |
| ! | TTTTTCTTTTTGATGGAGGG+CGG | - | tig0027699:1934-1953 | None:intergenic | 35.0% |
| TCATTGCTAAGAAGATGAAG+TGG | + | tig0027699:2269-2288 | Msa1435330:intron | 35.0% | |
| !!! | ATTTTTTGGTGGCCAAATCA+TGG | + | tig0027699:2336-2355 | Msa1435330:intron | 35.0% |
| !!! | TTTTTTGGTGGCCAAATCAT+GGG | + | tig0027699:2337-2356 | Msa1435330:intron | 35.0% |
| TTACTACAACACCATTTCCA+TGG | - | tig0027699:2502-2521 | None:intergenic | 35.0% | |
| !! | TGGAAATGGTGTTGTAGTAA+TGG | + | tig0027699:2502-2521 | Msa1435330:intron | 35.0% |
| TTAGCTGTTAATGTTTCAGC+TGG | + | tig0027699:2781-2800 | Msa1435330:CDS | 35.0% | |
| TAGCTGTTAATGTTTCAGCT+GGG | + | tig0027699:2782-2801 | Msa1435330:CDS | 35.0% | |
| TTCTTGCATGCACAAGAGAT+CGG | + | tig0027699:107-126 | Msa1435330:CDS | 40.0% | |
| ATTGAAGACACGTCCAACAA+TGG | + | tig0027699:156-175 | Msa1435330:CDS | 40.0% | |
| TTGAAGACACGTCCAACAAT+GGG | + | tig0027699:157-176 | Msa1435330:CDS | 40.0% | |
| !! | GGACAACTTTTTCCCATTGT+TGG | - | tig0027699:172-191 | None:intergenic | 40.0% |
| !! | AGTTGAAAGCAGATGGATTG+TGG | + | tig0027699:209-228 | Msa1435330:CDS | 40.0% |
| CTGGTATGATGAGAATGGTT+AGG | - | tig0027699:253-272 | None:intergenic | 40.0% | |
| TGAACAACCTTGCCTTTGTA+GGG | - | tig0027699:276-295 | None:intergenic | 40.0% | |
| TTGAACAACCTTGCCTTTGT+AGG | - | tig0027699:277-296 | None:intergenic | 40.0% | |
| TACAAAGGCAAGGTTGTTCA+AGG | + | tig0027699:276-295 | Msa1435330:CDS | 40.0% | |
| TCTCTTGTTAAAGATGCAGG+CGG | + | tig0027699:382-401 | Msa1435330:CDS | 40.0% | |
| GCAATTGGAAAAGAAGGTGA+TGG | + | tig0027699:466-485 | Msa1435330:intron | 40.0% | |
| ! | AGGGCTGCTTATGAGTATTT+TGG | + | tig0027699:606-625 | Msa1435330:intron | 40.0% |
| TTTGTTGGTGTGAATCACCA+TGG | + | tig0027699:690-709 | Msa1435330:intron | 40.0% | |
| GCGGGTATGGTGATTATAAA+AGG | + | tig0027699:934-953 | Msa1435330:intron | 40.0% | |
| ! | TCGTTGAGTTGTTGACATAC+CGG | - | tig0027699:1132-1151 | None:intergenic | 40.0% |
| TAGCATGAGTATACTCACCT+TGG | - | tig0027699:1334-1353 | None:intergenic | 40.0% | |
| TGTTGGAGGATGTGTTAGTT+GGG | + | tig0027699:1444-1463 | Msa1435330:intron | 40.0% | |
| AGCATTCACAACTGAGATCA+TGG | - | tig0027699:1517-1536 | None:intergenic | 40.0% | |
| GACACAATTGAAGCCACAAA+TGG | + | tig0027699:1688-1707 | Msa1435330:CDS | 40.0% | |
| GTTATGCAAGCATTTCTACG+AGG | + | tig0027699:1724-1743 | Msa1435330:CDS | 40.0% | |
| GGTGACTCAAATCCAAACAA+TGG | + | tig0027699:1869-1888 | Msa1435330:CDS | 40.0% | |
| CTGAAATTCACAGTCCATTG+CGG | + | tig0027699:1894-1913 | Msa1435330:CDS | 40.0% | |
| TGAAATTCACAGTCCATTGC+GGG | + | tig0027699:1895-1914 | Msa1435330:CDS | 40.0% | |
| CCACTTACAACATCAACAGA+TGG | - | tig0027699:2168-2187 | None:intergenic | 40.0% | |
| CCATCTGTTGATGTTGTAAG+TGG | + | tig0027699:2165-2184 | Msa1435330:intron | 40.0% | |
| TCTGTTGATGTTGTAAGTGG+TGG | + | tig0027699:2168-2187 | Msa1435330:intron | 40.0% | |
| CTTGCTAGATGCAAGTACAA+TGG | + | tig0027699:2194-2213 | Msa1435330:intron | 40.0% | |
| !! | TTTTTGGTGGCCAAATCATG+GGG | + | tig0027699:2338-2357 | Msa1435330:intron | 40.0% |
| ! | GAGAAAAGGAAATGATGGGG+AGG | + | tig0027699:72-91 | Msa1435330:CDS | 45.0% |
| TCTTGCATGCACAAGAGATC+GGG | + | tig0027699:108-127 | Msa1435330:CDS | 45.0% | |
| ! | TAGGGCTGGTATGATGAGAA+TGG | - | tig0027699:258-277 | None:intergenic | 45.0% |
| TCATCATACCAGCCCTACAA+AGG | + | tig0027699:261-280 | Msa1435330:CDS | 45.0% | |
| ! | TCAATGATGATGCAGGTGTG+AGG | + | tig0027699:341-360 | Msa1435330:CDS | 45.0% |
| CTCTTGTTAAAGATGCAGGC+GGG | + | tig0027699:383-402 | Msa1435330:CDS | 45.0% | |
| AACAAGGAACGACGTGCAAT+TGG | + | tig0027699:451-470 | Msa1435330:CDS | 45.0% | |
| CGACGTGCAATTGGAAAAGA+AGG | + | tig0027699:460-479 | Msa1435330:CDS | 45.0% | |
| ! | TGGAAAAGAAGGTGATGGCA+AGG | + | tig0027699:471-490 | Msa1435330:intron | 45.0% |
| TTTGGGCTGATGCAAGAAGT+AGG | + | tig0027699:586-605 | Msa1435330:intron | 45.0% | |
| TTGGGCTGATGCAAGAAGTA+GGG | + | tig0027699:587-606 | Msa1435330:intron | 45.0% | |
| TCATGGCTTCGTTGTATGCT+AGG | + | tig0027699:783-802 | Msa1435330:intron | 45.0% | |
| TCAGTCACAATACCAACAGG+GGG | - | tig0027699:813-832 | None:intergenic | 45.0% | |
| GTCAGTCACAATACCAACAG+GGG | - | tig0027699:814-833 | None:intergenic | 45.0% | |
| GGTCAGTCACAATACCAACA+GGG | - | tig0027699:815-834 | None:intergenic | 45.0% | |
| TGGTCAGTCACAATACCAAC+AGG | - | tig0027699:816-835 | None:intergenic | 45.0% | |
| GGCAATGCAAAATGCAATCG+AGG | + | tig0027699:842-861 | Msa1435330:intron | 45.0% | |
| TATGCCATAAACACCACCTG+TGG | - | tig0027699:887-906 | None:intergenic | 45.0% | |
| GTTTGACCCGCAAGAAATTG+TGG | - | tig0027699:1291-1310 | None:intergenic | 45.0% | |
| CTTTGCCACGTATCATGTGT+TGG | + | tig0027699:1427-1446 | Msa1435330:intron | 45.0% | |
| ATCCTCCAACACATGATACG+TGG | - | tig0027699:1435-1454 | None:intergenic | 45.0% | |
| GTGTTGGAGGATGTGTTAGT+TGG | + | tig0027699:1443-1462 | Msa1435330:intron | 45.0% | |
| GTTGGAGGATGTGTTAGTTG+GGG | + | tig0027699:1445-1464 | Msa1435330:intron | 45.0% | |
| TATGTGTGTGTGCTCAAGAG+AGG | + | tig0027699:1576-1595 | Msa1435330:intron | 45.0% | |
| ATGTGTGTGTGCTCAAGAGA+GGG | + | tig0027699:1577-1596 | Msa1435330:intron | 45.0% | |
| TTGCTTCTGATTTACCCACC+AGG | + | tig0027699:1810-1829 | Msa1435330:CDS | 45.0% | |
| TCAGTTGTAGCATTCCTGGT+GGG | - | tig0027699:1827-1846 | None:intergenic | 45.0% | |
| TTCAGTTGTAGCATTCCTGG+TGG | - | tig0027699:1828-1847 | None:intergenic | 45.0% | |
| CCTTTACGTTTAACCCGCAA+TGG | - | tig0027699:1911-1930 | None:intergenic | 45.0% | |
| ! | CCATTGCGGGTTAAACGTAA+AGG | + | tig0027699:1908-1927 | Msa1435330:CDS | 45.0% |
| CTCTGTTTGGGTCGTTTACT+TGG | - | tig0027699:1986-2005 | None:intergenic | 45.0% | |
| AAACGACCCAAACAGAGTGA+TGG | + | tig0027699:1989-2008 | Msa1435330:CDS | 45.0% | |
| AGACCTTTGTCCCCATGATT+TGG | - | tig0027699:2351-2370 | None:intergenic | 45.0% | |
| TTTCTTGCCTAGCTTCCTGT+TGG | + | tig0027699:2709-2728 | Msa1435330:intron | 45.0% | |
| AACAGTACCAACAGGAAGCT+AGG | - | tig0027699:2719-2738 | None:intergenic | 45.0% | |
| AAACCTGCAACAGTACCAAC+AGG | - | tig0027699:2727-2746 | None:intergenic | 45.0% | |
| GTTGGTACTGTTGCAGGTTT+AGG | + | tig0027699:2727-2746 | Msa1435330:CDS | 45.0% | |
| ! | TTTCAGCTGGGCAGTTTGTT+TGG | + | tig0027699:2794-2813 | Msa1435330:CDS | 45.0% |
| ! | TTCAGCTGGGCAGTTTGTTT+GGG | + | tig0027699:2795-2814 | Msa1435330:CDS | 45.0% |
| ATACCAGCCCTACAAAGGCA+AGG | + | tig0027699:266-285 | Msa1435330:CDS | 50.0% | |
| ! | CTTGGATGTGGGTTGCTATC+AGG | + | tig0027699:726-745 | Msa1435330:intron | 50.0% |
| ! | TTTTCCCTACAACTCGCCAC+AGG | + | tig0027699:868-887 | Msa1435330:intron | 50.0% |
| GCTGAAAAACTCAGCGGGTA+TGG | + | tig0027699:921-940 | Msa1435330:intron | 50.0% | |
| TGCCACGTATCATGTGTTGG+AGG | + | tig0027699:1430-1449 | Msa1435330:intron | 50.0% | |
| CTACGAGGTTGCTGAAGTAG+CGG | + | tig0027699:1739-1758 | Msa1435330:CDS | 50.0% | |
| CCTCTGCCATCACTCTGTTT+GGG | - | tig0027699:1998-2017 | None:intergenic | 50.0% | |
| TCCTCTGCCATCACTCTGTT+TGG | - | tig0027699:1999-2018 | None:intergenic | 50.0% | |
| TGGCCAAATCATGGGGACAA+AGG | + | tig0027699:2345-2364 | Msa1435330:intron | 50.0% | |
| CTTCCTGTTGGTACTGTTGC+AGG | + | tig0027699:2721-2740 | Msa1435330:CDS | 50.0% | |
| TTGCAGGTTTAGGTGCAGCT+GGG | + | tig0027699:2737-2756 | Msa1435330:CDS | 50.0% | |
| CAACCTTGCCTTTGTAGGGC+TGG | - | tig0027699:272-291 | None:intergenic | 55.0% | |
| ATGCTAGGTAAGCCCCCTGT+TGG | + | tig0027699:798-817 | Msa1435330:intron | 55.0% | |
| ACCACCTGTGGCGAGTTGTA+GGG | - | tig0027699:875-894 | None:intergenic | 55.0% | |
| CTCGCCACAGGTGGTGTTTA+TGG | + | tig0027699:880-899 | Msa1435330:intron | 55.0% | |
| CCCAAACAGAGTGATGGCAG+AGG | + | tig0027699:1995-2014 | Msa1435330:CDS | 55.0% | |
| GTTGCAGGTTTAGGTGCAGC+TGG | + | tig0027699:2736-2755 | Msa1435330:CDS | 55.0% | |
| TCCCTACAACTCGCCACAGG+TGG | + | tig0027699:871-890 | Msa1435330:intron | 60.0% | |
| CACCACCTGTGGCGAGTTGT+AGG | - | tig0027699:876-895 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027699 | gene | 4 | 2849 | 4 | ID=Msa1435330;Name=Msa1435330 |
| tig0027699 | mRNA | 4 | 2849 | 4 | ID=Msa1435330-mRNA-1;Parent=Msa1435330;Name=Msa1435330-mRNA-1;_AED=0.47;_eAED=0.49;_QI=0|0|0|0.33|1|1|3|0|345 |
| tig0027699 | exon | 4 | 481 | 4 | ID=Msa1435330-mRNA-1:exon:9616;Parent=Msa1435330-mRNA-1 |
| tig0027699 | exon | 1594 | 2024 | 1594 | ID=Msa1435330-mRNA-1:exon:9617;Parent=Msa1435330-mRNA-1 |
| tig0027699 | exon | 2721 | 2849 | 2721 | ID=Msa1435330-mRNA-1:exon:9618;Parent=Msa1435330-mRNA-1 |
| tig0027699 | CDS | 4 | 481 | 4 | ID=Msa1435330-mRNA-1:cds;Parent=Msa1435330-mRNA-1 |
| tig0027699 | CDS | 1594 | 2024 | 1594 | ID=Msa1435330-mRNA-1:cds;Parent=Msa1435330-mRNA-1 |
| tig0027699 | CDS | 2721 | 2849 | 2721 | ID=Msa1435330-mRNA-1:cds;Parent=Msa1435330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
