Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436060 | KEH17998.1 | 82.653 | 196 | 34 | 0 | 1 | 196 | 1 | 196 | 1.31e-116 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436060 | sp|Q9SCS4|LBD28_ARATH | 28.696 | 115 | 81 | 1 | 1 | 114 | 3 | 117 | 3.09e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436060 | A0A072TMD2 | 82.653 | 196 | 34 | 0 | 1 | 196 | 1 | 196 | 6.24e-117 | 339 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1436060 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436060 | MtrunA17_Chr8g0337271 | 82.653 | 196 | 34 | 0 | 1 | 196 | 1 | 196 | 1.20e-120 | 339 |
| Msa1436060 | MtrunA17_Chr8g0358731 | 34.328 | 201 | 95 | 6 | 1 | 199 | 1 | 166 | 4.03e-26 | 99.0 |
| Msa1436060 | MtrunA17_Chr6g0452691 | 27.211 | 147 | 100 | 2 | 10 | 149 | 9 | 155 | 3.67e-12 | 62.4 |
| Msa1436060 | MtrunA17_Chr5g0439111 | 27.660 | 141 | 96 | 4 | 10 | 148 | 9 | 145 | 1.17e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436060 | AT3G50510.1 | 28.696 | 115 | 81 | 1 | 1 | 114 | 3 | 117 | 3.14e-14 | 68.6 |
| Msa1436060 | AT3G50510.2 | 28.696 | 115 | 81 | 1 | 1 | 114 | 3 | 117 | 3.14e-14 | 68.6 |
| Msa1436060 | AT2G19820.1 | 31.183 | 93 | 63 | 1 | 5 | 96 | 7 | 99 | 7.57e-13 | 63.2 |
Find 51 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCCAAGGATGTGCTTATT+TGG | 0.063042 | tig0027849:+15329 | None:intergenic |
| TCAGTGTGTTATTCAAATTT+TGG | 0.145999 | tig0027849:-15494 | Msa1436060:CDS |
| CTGACTTAAACTTGAGTATA+TGG | 0.197296 | tig0027849:-15213 | Msa1436060:CDS |
| CATGACACTGATTGTGAATT+TGG | 0.306396 | tig0027849:-15550 | Msa1436060:CDS |
| ATCCAAGGATGTGCTTATTT+GGG | 0.326625 | tig0027849:+15330 | None:intergenic |
| TCTTGGACACCAATTGGAGC+TGG | 0.391570 | tig0027849:-15356 | Msa1436060:CDS |
| AAAGTCTTCATCCTCATTAC+TGG | 0.397078 | tig0027849:+14750 | None:intergenic |
| TTCATCAGCCACCATTCCCT+TGG | 0.409411 | tig0027849:+14807 | None:intergenic |
| TGTCCAAGAAAACCCCGATC+TGG | 0.424943 | tig0027849:+15370 | None:intergenic |
| TTTGGGCACCCAGCTCCAAT+TGG | 0.428496 | tig0027849:+15347 | None:intergenic |
| TTAATTGCATAATTCTCATC+AGG | 0.430232 | tig0027849:+15461 | None:intergenic |
| GGGAATGGTGGCTGATGAAA+AGG | 0.430935 | tig0027849:-14803 | Msa1436060:CDS |
| TGACTTAAACTTGAGTATAT+GGG | 0.443514 | tig0027849:-15212 | Msa1436060:intron |
| CTTGGACACCAATTGGAGCT+GGG | 0.456606 | tig0027849:-15355 | Msa1436060:CDS |
| TTGGCGAAGTAACCCAGATC+GGG | 0.470404 | tig0027849:-15383 | Msa1436060:CDS |
| TGCCCAAATAAGCACATCCT+TGG | 0.475102 | tig0027849:-15332 | Msa1436060:CDS |
| AGCAATTTCAATTTCATCCA+AGG | 0.478006 | tig0027849:+15315 | None:intergenic |
| CATATACTCAAGTTTAAGTC+AGG | 0.479889 | tig0027849:+15214 | None:intergenic |
| TCTCCTCTTTCACAAGTACA+TGG | 0.497829 | tig0027849:+14963 | None:intergenic |
| TCCTTCTGTGAGAAGCGAAT+CGG | 0.511515 | tig0027849:+15411 | None:intergenic |
| TACTGAACACATGGGTGACA+TGG | 0.514848 | tig0027849:-15015 | Msa1436060:CDS |
| GCCGATTCGCTTCTCACAGA+AGG | 0.517177 | tig0027849:-15412 | Msa1436060:CDS |
| ATTCCATGTACTTGTGAAAG+AGG | 0.523001 | tig0027849:-14966 | Msa1436060:CDS |
| TGTACACAGTAATGCATCCA+AGG | 0.526625 | tig0027849:-14824 | Msa1436060:intron |
| GTCCAAGAAAACCCCGATCT+GGG | 0.526848 | tig0027849:+15371 | None:intergenic |
| CTGAAAGTCAGCATGCCTAC+TGG | 0.528158 | tig0027849:+15513 | None:intergenic |
| TGTGCCGACATATGAGAAGA+AGG | 0.531308 | tig0027849:-15573 | Msa1436060:CDS |
| GTGGCTGATGAAAAGGGAAA+AGG | 0.537842 | tig0027849:-14796 | Msa1436060:CDS |
| CTTGGCGAAGTAACCCAGAT+CGG | 0.540526 | tig0027849:-15384 | Msa1436060:CDS |
| CATGCCTTCTTCTCATATGT+CGG | 0.541385 | tig0027849:+15569 | None:intergenic |
| GTCTTCATCCTCATTACTGG+TGG | 0.547436 | tig0027849:+14753 | None:intergenic |
| GCAACAATTTGTCTTTGATG+TGG | 0.547669 | tig0027849:+15433 | None:intergenic |
| TTCTCACAGAAGGAGAAGCT+TGG | 0.549947 | tig0027849:-15402 | Msa1436060:CDS |
| GTGCAAGAAGGCATGGAAGA+AGG | 0.556829 | tig0027849:+15244 | None:intergenic |
| CAGTAATGCATCCAAGGGAA+TGG | 0.575632 | tig0027849:-14818 | Msa1436060:CDS |
| AATTTGAGTGCAAGAAGGCA+TGG | 0.581783 | tig0027849:+15237 | None:intergenic |
| AAATGCATCAGAGAAATACA+AGG | 0.593981 | tig0027849:-15612 | Msa1436060:CDS |
| TAATGCATCCAAGGGAATGG+TGG | 0.611462 | tig0027849:-14815 | Msa1436060:CDS |
| ACAAGGACCCACCAGTAATG+AGG | 0.613595 | tig0027849:-14761 | Msa1436060:CDS |
| CTTGTGAAAGAGGAGAATCA+AGG | 0.617523 | tig0027849:-14956 | Msa1436060:intron |
| GGAATGGTGGCTGATGAAAA+GGG | 0.618900 | tig0027849:-14802 | Msa1436060:CDS |
| CATGGGTGACATGGACATCA+CGG | 0.621521 | tig0027849:-15006 | Msa1436060:CDS |
| TCAGGAATTTGAGTGCAAGA+AGG | 0.621914 | tig0027849:+15232 | None:intergenic |
| TTAATAGAGTACTGAACACA+TGG | 0.626411 | tig0027849:-15024 | Msa1436060:intron |
| GTACACAGTAATGCATCCAA+GGG | 0.631300 | tig0027849:-14823 | Msa1436060:intron |
| TCTTCATCCTCATTACTGGT+GGG | 0.637097 | tig0027849:+14754 | None:intergenic |
| AAAGGAATTCTTAATGAACA+AGG | 0.657272 | tig0027849:-14778 | Msa1436060:CDS |
| TGGCGAAGTAACCCAGATCG+GGG | 0.667644 | tig0027849:-15382 | Msa1436060:CDS |
| ATCACGGAACAAGACATGCA+AGG | 0.684891 | tig0027849:-14990 | Msa1436060:CDS |
| AATGCATCAGAGAAATACAA+GGG | 0.687321 | tig0027849:-15611 | Msa1436060:CDS |
| TAATAGAGTACTGAACACAT+GGG | 0.740993 | tig0027849:-15023 | Msa1436060:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAAAAGAATGATAGATTT+TGG | + | tig0027849:15286-15305 | None:intergenic | 20.0% |
| !!! | TTGAAAAGAATGATAGATTT+TGG | + | tig0027849:15286-15305 | None:intergenic | 20.0% |
| !!! | TCAGTGTGTTATTCAAATTT+TGG | - | tig0027849:14860-14879 | Msa1436060:intron | 25.0% |
| !!! | CAGTGTGTTATTCAAATTTT+GGG | - | tig0027849:14861-14880 | Msa1436060:intron | 25.0% |
| !!! | AGTGTGTTATTCAAATTTTG+GGG | - | tig0027849:14862-14881 | Msa1436060:intron | 25.0% |
| ! | TTAATTGCATAATTCTCATC+AGG | + | tig0027849:14896-14915 | None:intergenic | 25.0% |
| ! | TGACTTAAACTTGAGTATAT+GGG | - | tig0027849:15142-15161 | Msa1436060:intron | 25.0% |
| ! | AAAGGAATTCTTAATGAACA+AGG | - | tig0027849:15576-15595 | Msa1436060:CDS | 25.0% |
| !!! | TCAGTGTGTTATTCAAATTT+TGG | - | tig0027849:14860-14879 | Msa1436060:intron | 25.0% |
| !!! | CAGTGTGTTATTCAAATTTT+GGG | - | tig0027849:14861-14880 | Msa1436060:intron | 25.0% |
| !!! | AGTGTGTTATTCAAATTTTG+GGG | - | tig0027849:14862-14881 | Msa1436060:intron | 25.0% |
| ! | TTAATTGCATAATTCTCATC+AGG | + | tig0027849:14896-14915 | None:intergenic | 25.0% |
| ! | TGACTTAAACTTGAGTATAT+GGG | - | tig0027849:15142-15161 | Msa1436060:intron | 25.0% |
| ! | AAAGGAATTCTTAATGAACA+AGG | - | tig0027849:15576-15595 | Msa1436060:CDS | 25.0% |
| AGCAATTTCAATTTCATCCA+AGG | + | tig0027849:15042-15061 | None:intergenic | 30.0% | |
| CATATACTCAAGTTTAAGTC+AGG | + | tig0027849:15143-15162 | None:intergenic | 30.0% | |
| CTGACTTAAACTTGAGTATA+TGG | - | tig0027849:15141-15160 | Msa1436060:intron | 30.0% | |
| ATGTGTTCAGTACTCTATTA+AGG | + | tig0027849:15331-15350 | None:intergenic | 30.0% | |
| !! | TTAATAGAGTACTGAACACA+TGG | - | tig0027849:15330-15349 | Msa1436060:CDS | 30.0% |
| !! | TAATAGAGTACTGAACACAT+GGG | - | tig0027849:15331-15350 | Msa1436060:CDS | 30.0% |
| AGCAATTTCAATTTCATCCA+AGG | + | tig0027849:15042-15061 | None:intergenic | 30.0% | |
| CATATACTCAAGTTTAAGTC+AGG | + | tig0027849:15143-15162 | None:intergenic | 30.0% | |
| CTGACTTAAACTTGAGTATA+TGG | - | tig0027849:15141-15160 | Msa1436060:intron | 30.0% | |
| ATGTGTTCAGTACTCTATTA+AGG | + | tig0027849:15331-15350 | None:intergenic | 30.0% | |
| !! | TTAATAGAGTACTGAACACA+TGG | - | tig0027849:15330-15349 | Msa1436060:CDS | 30.0% |
| !! | TAATAGAGTACTGAACACAT+GGG | - | tig0027849:15331-15350 | Msa1436060:CDS | 30.0% |
| ! | CATGACACTGATTGTGAATT+TGG | - | tig0027849:14804-14823 | Msa1436060:CDS | 35.0% |
| GCAACAATTTGTCTTTGATG+TGG | + | tig0027849:14924-14943 | None:intergenic | 35.0% | |
| ATCCAAGGATGTGCTTATTT+GGG | + | tig0027849:15027-15046 | None:intergenic | 35.0% | |
| ATTCCATGTACTTGTGAAAG+AGG | - | tig0027849:15388-15407 | Msa1436060:CDS | 35.0% | |
| AAAGTCTTCATCCTCATTAC+TGG | + | tig0027849:15607-15626 | None:intergenic | 35.0% | |
| CTTGTATTTCTCTGATGCAT+TGG | + | tig0027849:14744-14763 | None:intergenic | 35.0% | |
| ! | CATGACACTGATTGTGAATT+TGG | - | tig0027849:14804-14823 | Msa1436060:CDS | 35.0% |
| GCAACAATTTGTCTTTGATG+TGG | + | tig0027849:14924-14943 | None:intergenic | 35.0% | |
| ATCCAAGGATGTGCTTATTT+GGG | + | tig0027849:15027-15046 | None:intergenic | 35.0% | |
| ATTCCATGTACTTGTGAAAG+AGG | - | tig0027849:15388-15407 | Msa1436060:CDS | 35.0% | |
| AAAGTCTTCATCCTCATTAC+TGG | + | tig0027849:15607-15626 | None:intergenic | 35.0% | |
| CATGCCTTCTTCTCATATGT+CGG | + | tig0027849:14788-14807 | None:intergenic | 40.0% | |
| ! | GTCAATACTTTTCGACCAGT+AGG | - | tig0027849:14826-14845 | Msa1436060:intron | 40.0% |
| CATCCAAGGATGTGCTTATT+TGG | + | tig0027849:15028-15047 | None:intergenic | 40.0% | |
| AATTTGAGTGCAAGAAGGCA+TGG | + | tig0027849:15120-15139 | None:intergenic | 40.0% | |
| TCAGGAATTTGAGTGCAAGA+AGG | + | tig0027849:15125-15144 | None:intergenic | 40.0% | |
| TCTCCTCTTTCACAAGTACA+TGG | + | tig0027849:15394-15413 | None:intergenic | 40.0% | |
| CTTGTGAAAGAGGAGAATCA+AGG | - | tig0027849:15398-15417 | Msa1436060:CDS | 40.0% | |
| TGTACACAGTAATGCATCCA+AGG | - | tig0027849:15530-15549 | Msa1436060:CDS | 40.0% | |
| GTACACAGTAATGCATCCAA+GGG | - | tig0027849:15531-15550 | Msa1436060:CDS | 40.0% | |
| TCTTCATCCTCATTACTGGT+GGG | + | tig0027849:15603-15622 | None:intergenic | 40.0% | |
| CATGCCTTCTTCTCATATGT+CGG | + | tig0027849:14788-14807 | None:intergenic | 40.0% | |
| ! | GTCAATACTTTTCGACCAGT+AGG | - | tig0027849:14826-14845 | Msa1436060:intron | 40.0% |
| CATCCAAGGATGTGCTTATT+TGG | + | tig0027849:15028-15047 | None:intergenic | 40.0% | |
| AATTTGAGTGCAAGAAGGCA+TGG | + | tig0027849:15120-15139 | None:intergenic | 40.0% | |
| TCAGGAATTTGAGTGCAAGA+AGG | + | tig0027849:15125-15144 | None:intergenic | 40.0% | |
| TCTCCTCTTTCACAAGTACA+TGG | + | tig0027849:15394-15413 | None:intergenic | 40.0% | |
| CTTGTGAAAGAGGAGAATCA+AGG | - | tig0027849:15398-15417 | Msa1436060:CDS | 40.0% | |
| TGTACACAGTAATGCATCCA+AGG | - | tig0027849:15530-15549 | Msa1436060:CDS | 40.0% | |
| GTACACAGTAATGCATCCAA+GGG | - | tig0027849:15531-15550 | Msa1436060:CDS | 40.0% | |
| TCTTCATCCTCATTACTGGT+GGG | + | tig0027849:15603-15622 | None:intergenic | 40.0% | |
| ! | TGTGCCGACATATGAGAAGA+AGG | - | tig0027849:14781-14800 | Msa1436060:CDS | 45.0% |
| TCCTTCTGTGAGAAGCGAAT+CGG | + | tig0027849:14946-14965 | None:intergenic | 45.0% | |
| TTCTCACAGAAGGAGAAGCT+TGG | - | tig0027849:14952-14971 | Msa1436060:intron | 45.0% | |
| ! | GGGTTTTCTTGGACACCAAT+TGG | - | tig0027849:14992-15011 | Msa1436060:CDS | 45.0% |
| TGCCCAAATAAGCACATCCT+TGG | - | tig0027849:15022-15041 | Msa1436060:intron | 45.0% | |
| TACTGAACACATGGGTGACA+TGG | - | tig0027849:15339-15358 | Msa1436060:CDS | 45.0% | |
| ATCACGGAACAAGACATGCA+AGG | - | tig0027849:15364-15383 | Msa1436060:CDS | 45.0% | |
| CAGTAATGCATCCAAGGGAA+TGG | - | tig0027849:15536-15555 | Msa1436060:CDS | 45.0% | |
| TAATGCATCCAAGGGAATGG+TGG | - | tig0027849:15539-15558 | Msa1436060:CDS | 45.0% | |
| GGAATGGTGGCTGATGAAAA+GGG | - | tig0027849:15552-15571 | Msa1436060:CDS | 45.0% | |
| GTGGCTGATGAAAAGGGAAA+AGG | - | tig0027849:15558-15577 | Msa1436060:CDS | 45.0% | |
| GTCTTCATCCTCATTACTGG+TGG | + | tig0027849:15604-15623 | None:intergenic | 45.0% | |
| ! | TGTGCCGACATATGAGAAGA+AGG | - | tig0027849:14781-14800 | Msa1436060:CDS | 45.0% |
| TCCTTCTGTGAGAAGCGAAT+CGG | + | tig0027849:14946-14965 | None:intergenic | 45.0% | |
| TTCTCACAGAAGGAGAAGCT+TGG | - | tig0027849:14952-14971 | Msa1436060:intron | 45.0% | |
| ! | GGGTTTTCTTGGACACCAAT+TGG | - | tig0027849:14992-15011 | Msa1436060:CDS | 45.0% |
| TGCCCAAATAAGCACATCCT+TGG | - | tig0027849:15022-15041 | Msa1436060:intron | 45.0% | |
| TACTGAACACATGGGTGACA+TGG | - | tig0027849:15339-15358 | Msa1436060:CDS | 45.0% | |
| ATCACGGAACAAGACATGCA+AGG | - | tig0027849:15364-15383 | Msa1436060:CDS | 45.0% | |
| CAGTAATGCATCCAAGGGAA+TGG | - | tig0027849:15536-15555 | Msa1436060:CDS | 45.0% | |
| TAATGCATCCAAGGGAATGG+TGG | - | tig0027849:15539-15558 | Msa1436060:CDS | 45.0% | |
| GGAATGGTGGCTGATGAAAA+GGG | - | tig0027849:15552-15571 | Msa1436060:CDS | 45.0% | |
| GTGGCTGATGAAAAGGGAAA+AGG | - | tig0027849:15558-15577 | Msa1436060:CDS | 45.0% | |
| GTCTTCATCCTCATTACTGG+TGG | + | tig0027849:15604-15623 | None:intergenic | 45.0% | |
| CTGAAAGTCAGCATGCCTAC+TGG | + | tig0027849:14844-14863 | None:intergenic | 50.0% | |
| CTTGGCGAAGTAACCCAGAT+CGG | - | tig0027849:14970-14989 | Msa1436060:CDS | 50.0% | |
| TTGGCGAAGTAACCCAGATC+GGG | - | tig0027849:14971-14990 | Msa1436060:CDS | 50.0% | |
| ! | AACCCAGATCGGGGTTTTCT+TGG | - | tig0027849:14981-15000 | Msa1436060:CDS | 50.0% |
| GTCCAAGAAAACCCCGATCT+GGG | + | tig0027849:14986-15005 | None:intergenic | 50.0% | |
| TGTCCAAGAAAACCCCGATC+TGG | + | tig0027849:14987-15006 | None:intergenic | 50.0% | |
| TCTTGGACACCAATTGGAGC+TGG | - | tig0027849:14998-15017 | Msa1436060:CDS | 50.0% | |
| CTTGGACACCAATTGGAGCT+GGG | - | tig0027849:14999-15018 | Msa1436060:CDS | 50.0% | |
| ! | GTGCAAGAAGGCATGGAAGA+AGG | + | tig0027849:15113-15132 | None:intergenic | 50.0% |
| CATGGGTGACATGGACATCA+CGG | - | tig0027849:15348-15367 | Msa1436060:CDS | 50.0% | |
| TTCATCAGCCACCATTCCCT+TGG | + | tig0027849:15550-15569 | None:intergenic | 50.0% | |
| GGGAATGGTGGCTGATGAAA+AGG | - | tig0027849:15551-15570 | Msa1436060:CDS | 50.0% | |
| ACAAGGACCCACCAGTAATG+AGG | - | tig0027849:15593-15612 | Msa1436060:CDS | 50.0% | |
| CTGAAAGTCAGCATGCCTAC+TGG | + | tig0027849:14844-14863 | None:intergenic | 50.0% | |
| CTTGGCGAAGTAACCCAGAT+CGG | - | tig0027849:14970-14989 | Msa1436060:CDS | 50.0% | |
| TTGGCGAAGTAACCCAGATC+GGG | - | tig0027849:14971-14990 | Msa1436060:CDS | 50.0% | |
| ! | AACCCAGATCGGGGTTTTCT+TGG | - | tig0027849:14981-15000 | Msa1436060:CDS | 50.0% |
| GTCCAAGAAAACCCCGATCT+GGG | + | tig0027849:14986-15005 | None:intergenic | 50.0% | |
| TGTCCAAGAAAACCCCGATC+TGG | + | tig0027849:14987-15006 | None:intergenic | 50.0% | |
| TCTTGGACACCAATTGGAGC+TGG | - | tig0027849:14998-15017 | Msa1436060:CDS | 50.0% | |
| CTTGGACACCAATTGGAGCT+GGG | - | tig0027849:14999-15018 | Msa1436060:CDS | 50.0% | |
| ! | GTGCAAGAAGGCATGGAAGA+AGG | + | tig0027849:15113-15132 | None:intergenic | 50.0% |
| CATGGGTGACATGGACATCA+CGG | - | tig0027849:15348-15367 | Msa1436060:CDS | 50.0% | |
| TTCATCAGCCACCATTCCCT+TGG | + | tig0027849:15550-15569 | None:intergenic | 50.0% | |
| GGGAATGGTGGCTGATGAAA+AGG | - | tig0027849:15551-15570 | Msa1436060:CDS | 50.0% | |
| ACAAGGACCCACCAGTAATG+AGG | - | tig0027849:15593-15612 | Msa1436060:CDS | 50.0% | |
| !! | GCCGATTCGCTTCTCACAGA+AGG | - | tig0027849:14942-14961 | Msa1436060:intron | 55.0% |
| TGGCGAAGTAACCCAGATCG+GGG | - | tig0027849:14972-14991 | Msa1436060:CDS | 55.0% | |
| TTTGGGCACCCAGCTCCAAT+TGG | + | tig0027849:15010-15029 | None:intergenic | 55.0% | |
| !! | GCCGATTCGCTTCTCACAGA+AGG | - | tig0027849:14942-14961 | Msa1436060:intron | 55.0% |
| TGGCGAAGTAACCCAGATCG+GGG | - | tig0027849:14972-14991 | Msa1436060:CDS | 55.0% | |
| TTTGGGCACCCAGCTCCAAT+TGG | + | tig0027849:15010-15029 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027849 | gene | 14744 | 15632 | 14744 | ID=Msa1436060;Name=Msa1436060 |
| tig0027849 | mRNA | 14744 | 15632 | 14744 | ID=Msa1436060-mRNA-1;Parent=Msa1436060;Name=Msa1436060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|0.66|3|0|199 |
| tig0027849 | exon | 15213 | 15632 | 15213 | ID=Msa1436060-mRNA-1:exon:10060;Parent=Msa1436060-mRNA-1 |
| tig0027849 | exon | 14957 | 15039 | 14957 | ID=Msa1436060-mRNA-1:exon:10059;Parent=Msa1436060-mRNA-1 |
| tig0027849 | exon | 14744 | 14837 | 14744 | ID=Msa1436060-mRNA-1:exon:10058;Parent=Msa1436060-mRNA-1 |
| tig0027849 | CDS | 15213 | 15632 | 15213 | ID=Msa1436060-mRNA-1:cds;Parent=Msa1436060-mRNA-1 |
| tig0027849 | CDS | 14957 | 15039 | 14957 | ID=Msa1436060-mRNA-1:cds;Parent=Msa1436060-mRNA-1 |
| tig0027849 | CDS | 14744 | 14837 | 14744 | ID=Msa1436060-mRNA-1:cds;Parent=Msa1436060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
