Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437000 | QOV03070.1 | 93.750 | 352 | 5 | 3 | 1 | 336 | 1 | 351 | 0.0 | 663 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437000 | sp|Q9M2Q6|SPL15_ARATH | 43.411 | 258 | 112 | 8 | 23 | 269 | 27 | 261 | 3.30e-45 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437000 | A0A7U3NI82 | 93.750 | 352 | 5 | 3 | 1 | 336 | 1 | 351 | 0.0 | 663 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1437000 | TF | SBP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437000 | MtrunA17_Chr1g0175021 | 86.957 | 230 | 19 | 2 | 118 | 336 | 8 | 237 | 8.43e-143 | 403 |
| Msa1437000 | MtrunA17_Chr7g0258471 | 50.148 | 337 | 110 | 12 | 23 | 333 | 91 | 395 | 4.26e-77 | 242 |
| Msa1437000 | MtrunA17_Chr1g0175031 | 85.981 | 107 | 6 | 2 | 17 | 117 | 17 | 120 | 3.06e-50 | 164 |
| Msa1437000 | MtrunA17_Chr3g0122411 | 36.429 | 280 | 129 | 10 | 8 | 260 | 111 | 368 | 8.13e-38 | 140 |
| Msa1437000 | MtrunA17_Chr7g0231911 | 36.771 | 223 | 113 | 5 | 20 | 235 | 101 | 302 | 1.69e-32 | 123 |
| Msa1437000 | MtrunA17_Chr8g0360361 | 65.116 | 86 | 28 | 1 | 75 | 158 | 69 | 154 | 1.91e-32 | 119 |
| Msa1437000 | MtrunA17_Chr8g0334671 | 46.309 | 149 | 66 | 3 | 2 | 146 | 124 | 262 | 1.19e-31 | 121 |
| Msa1437000 | MtrunA17_Chr5g0420051 | 73.239 | 71 | 19 | 0 | 76 | 146 | 186 | 256 | 1.81e-31 | 122 |
| Msa1437000 | MtrunA17_Chr2g0308321 | 73.239 | 71 | 19 | 0 | 76 | 146 | 176 | 246 | 1.51e-30 | 121 |
| Msa1437000 | MtrunA17_Chr4g0046991 | 72.464 | 69 | 19 | 0 | 76 | 144 | 78 | 146 | 3.05e-30 | 112 |
| Msa1437000 | MtrunA17_Chr3g0132091 | 46.429 | 140 | 60 | 2 | 18 | 147 | 15 | 149 | 3.74e-30 | 117 |
| Msa1437000 | MtrunA17_Chr8g0386271 | 61.176 | 85 | 27 | 1 | 76 | 154 | 104 | 188 | 1.09e-29 | 117 |
| Msa1437000 | MtrunA17_Chr2g0282521 | 72.464 | 69 | 19 | 0 | 76 | 144 | 69 | 137 | 1.61e-29 | 110 |
| Msa1437000 | MtrunA17_Chr2g0302791 | 57.609 | 92 | 36 | 1 | 76 | 164 | 144 | 235 | 1.02e-28 | 117 |
| Msa1437000 | MtrunA17_Chr7g0224821 | 62.821 | 78 | 29 | 0 | 76 | 153 | 82 | 159 | 1.48e-28 | 113 |
| Msa1437000 | MtrunA17_Chr4g0061651 | 37.156 | 218 | 77 | 7 | 76 | 241 | 128 | 337 | 4.55e-28 | 113 |
| Msa1437000 | MtrunA17_Chr1g0162871 | 61.538 | 91 | 32 | 1 | 57 | 147 | 93 | 180 | 6.71e-27 | 111 |
| Msa1437000 | MtrunA17_Chr8g0377401 | 46.094 | 128 | 54 | 2 | 16 | 143 | 122 | 234 | 8.07e-27 | 106 |
| Msa1437000 | MtrunA17_Chr7g0270541 | 68.116 | 69 | 22 | 0 | 76 | 144 | 150 | 218 | 3.84e-26 | 109 |
| Msa1437000 | MtrunA17_Chr1g0194121 | 69.565 | 69 | 21 | 0 | 76 | 144 | 152 | 220 | 4.82e-26 | 109 |
| Msa1437000 | MtrunA17_Chr8g0377421 | 62.319 | 69 | 26 | 0 | 76 | 144 | 137 | 205 | 2.00e-23 | 98.2 |
| Msa1437000 | MtrunA17_Chr2g0286661 | 47.561 | 82 | 43 | 0 | 74 | 155 | 106 | 187 | 5.69e-20 | 90.9 |
| Msa1437000 | MtrunA17_Chr2g0317041 | 59.574 | 47 | 19 | 0 | 76 | 122 | 104 | 150 | 1.51e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437000 | AT3G57920.1 | 43.411 | 258 | 112 | 8 | 23 | 269 | 27 | 261 | 3.35e-46 | 160 |
| Msa1437000 | AT2G42200.1 | 44.444 | 243 | 94 | 9 | 23 | 243 | 32 | 255 | 9.45e-44 | 154 |
| Msa1437000 | AT3G15270.1 | 67.105 | 76 | 25 | 0 | 75 | 150 | 67 | 142 | 5.67e-32 | 118 |
| Msa1437000 | AT2G33810.1 | 72.464 | 69 | 19 | 0 | 76 | 144 | 59 | 127 | 2.68e-31 | 115 |
| Msa1437000 | AT1G69170.1 | 60.000 | 95 | 31 | 1 | 76 | 163 | 129 | 223 | 1.45e-30 | 120 |
| Msa1437000 | AT1G53160.3 | 60.227 | 88 | 35 | 0 | 74 | 161 | 57 | 144 | 4.17e-30 | 113 |
| Msa1437000 | AT1G53160.2 | 50.862 | 116 | 53 | 2 | 75 | 188 | 58 | 171 | 4.67e-30 | 113 |
| Msa1437000 | AT1G53160.1 | 50.862 | 116 | 53 | 2 | 75 | 188 | 58 | 171 | 4.67e-30 | 113 |
| Msa1437000 | AT5G43270.3 | 50.000 | 136 | 49 | 3 | 22 | 147 | 119 | 245 | 9.24e-30 | 118 |
| Msa1437000 | AT5G43270.1 | 50.000 | 136 | 49 | 3 | 22 | 147 | 119 | 245 | 9.24e-30 | 118 |
| Msa1437000 | AT5G43270.2 | 50.000 | 136 | 49 | 3 | 22 | 147 | 119 | 245 | 9.24e-30 | 118 |
| Msa1437000 | AT5G50570.1 | 48.611 | 144 | 61 | 4 | 15 | 147 | 36 | 177 | 2.00e-29 | 116 |
| Msa1437000 | AT5G50570.2 | 48.611 | 144 | 61 | 4 | 15 | 147 | 36 | 177 | 2.00e-29 | 116 |
| Msa1437000 | AT5G50670.1 | 48.611 | 144 | 61 | 4 | 15 | 147 | 36 | 177 | 2.00e-29 | 116 |
| Msa1437000 | AT5G50670.2 | 48.611 | 144 | 61 | 4 | 15 | 147 | 36 | 177 | 2.00e-29 | 116 |
| Msa1437000 | AT2G47070.1 | 70.833 | 72 | 21 | 0 | 76 | 147 | 111 | 182 | 1.07e-28 | 117 |
| Msa1437000 | AT1G02065.1 | 48.387 | 124 | 53 | 2 | 22 | 144 | 148 | 261 | 1.07e-28 | 113 |
| Msa1437000 | AT3G60030.1 | 57.143 | 91 | 37 | 1 | 76 | 164 | 132 | 222 | 1.49e-28 | 117 |
| Msa1437000 | AT1G27370.6 | 43.750 | 144 | 62 | 3 | 13 | 146 | 117 | 251 | 1.74e-28 | 113 |
| Msa1437000 | AT1G27370.1 | 43.750 | 144 | 62 | 3 | 13 | 146 | 117 | 251 | 5.03e-28 | 113 |
| Msa1437000 | AT1G27370.5 | 43.750 | 144 | 62 | 3 | 13 | 146 | 117 | 251 | 5.03e-28 | 113 |
| Msa1437000 | AT1G27370.3 | 43.750 | 144 | 62 | 3 | 13 | 146 | 117 | 251 | 5.03e-28 | 113 |
| Msa1437000 | AT1G27370.2 | 43.750 | 144 | 62 | 3 | 13 | 146 | 117 | 251 | 5.03e-28 | 113 |
| Msa1437000 | AT1G27370.4 | 43.750 | 144 | 62 | 3 | 13 | 146 | 117 | 251 | 5.03e-28 | 113 |
| Msa1437000 | AT1G27370.7 | 43.750 | 144 | 62 | 3 | 13 | 146 | 117 | 251 | 5.03e-28 | 113 |
| Msa1437000 | AT1G27360.2 | 69.014 | 71 | 22 | 0 | 76 | 146 | 180 | 250 | 6.22e-28 | 112 |
| Msa1437000 | AT1G27360.1 | 69.014 | 71 | 22 | 0 | 76 | 146 | 180 | 250 | 6.22e-28 | 112 |
| Msa1437000 | AT1G27360.3 | 69.014 | 71 | 22 | 0 | 76 | 146 | 180 | 250 | 6.22e-28 | 112 |
| Msa1437000 | AT1G27360.4 | 69.014 | 71 | 22 | 0 | 76 | 146 | 180 | 250 | 6.22e-28 | 112 |
| Msa1437000 | AT1G20980.1 | 46.763 | 139 | 57 | 4 | 70 | 191 | 114 | 252 | 7.26e-28 | 115 |
| Msa1437000 | AT1G76580.2 | 61.905 | 84 | 27 | 1 | 72 | 150 | 110 | 193 | 1.53e-27 | 114 |
| Msa1437000 | AT1G76580.1 | 61.905 | 84 | 27 | 1 | 72 | 150 | 110 | 193 | 1.76e-27 | 114 |
| Msa1437000 | AT1G76580.3 | 61.905 | 84 | 27 | 1 | 72 | 150 | 110 | 193 | 1.88e-27 | 113 |
| Msa1437000 | AT2G47070.2 | 75.472 | 53 | 13 | 0 | 95 | 147 | 1 | 53 | 2.30e-20 | 92.4 |
| Msa1437000 | AT5G18830.2 | 53.425 | 73 | 33 | 1 | 74 | 145 | 141 | 213 | 8.39e-20 | 90.9 |
| Msa1437000 | AT5G18830.3 | 53.425 | 73 | 33 | 1 | 74 | 145 | 141 | 213 | 9.77e-20 | 90.9 |
| Msa1437000 | AT5G18830.1 | 53.425 | 73 | 33 | 1 | 74 | 145 | 141 | 213 | 1.02e-19 | 90.9 |
| Msa1437000 | AT1G02065.2 | 41.176 | 102 | 41 | 2 | 22 | 118 | 148 | 235 | 4.52e-14 | 71.2 |
Find 82 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCTTCTGTTGTTGTTTC+TGG | 0.016193 | tig0028065:-43467 | Msa1437000:CDS |
| TTCAAACAAATGCTTCTTCT+TGG | 0.204356 | tig0028065:-39370 | Msa1437000:CDS |
| TCATTGTAGTTATCCATTAT+TGG | 0.242355 | tig0028065:+39545 | None:intergenic |
| CTTTCAGGCATTATTTGTTT+TGG | 0.242801 | tig0028065:-39048 | Msa1437000:three_prime_UTR |
| GCTTTCTCCGCCTTTCATTA+TGG | 0.263953 | tig0028065:+40132 | None:intergenic |
| CGTTTCCCTTGATCAAATTC+AGG | 0.267407 | tig0028065:+40179 | None:intergenic |
| ATTTGTTTGAAGTTGATAAT+TGG | 0.275585 | tig0028065:+39382 | None:intergenic |
| TTCTGTTGTTGTTTCTGGTT+TGG | 0.298755 | tig0028065:-43462 | Msa1437000:CDS |
| CCCGAGGATGTTCCTGATCT+TGG | 0.303604 | tig0028065:-39311 | Msa1437000:CDS |
| TCATCTACCGAGTTTCTTGA+TGG | 0.335549 | tig0028065:-43737 | Msa1437000:CDS |
| CCACCAACACCAACAGCATT+AGG | 0.337043 | tig0028065:+43641 | None:intergenic |
| TTTCTTGATGGATTAAAGTT+TGG | 0.342712 | tig0028065:-43725 | Msa1437000:CDS |
| TACTAGACATCCTCCAATAA+TGG | 0.345407 | tig0028065:-39558 | Msa1437000:CDS |
| CTGGCACCACCAATGAGTTC+AGG | 0.359216 | tig0028065:-43791 | None:intergenic |
| CACAAGGCAAGAACCATTAC+TGG | 0.360782 | tig0028065:-39232 | Msa1437000:CDS |
| CCTAATGCTGTTGGTGTTGG+TGG | 0.385726 | tig0028065:-43641 | Msa1437000:CDS |
| AACAACTTGTTGAATTTCAA+TGG | 0.386985 | tig0028065:-39437 | Msa1437000:CDS |
| GTCATTTGTGAAATTATAAC+TGG | 0.390812 | tig0028065:-39186 | Msa1437000:three_prime_UTR |
| TCTTCATCATCTTCATCATC+AGG | 0.401033 | tig0028065:-43605 | Msa1437000:CDS |
| GAAATTATAACTGGTGGTAT+TGG | 0.405660 | tig0028065:-39177 | Msa1437000:three_prime_UTR |
| CATGGAAGTTTGTTCCTTGT+AGG | 0.408815 | tig0028065:+39588 | None:intergenic |
| TTGTTTCTGGTTTGGAGCAA+AGG | 0.417760 | tig0028065:-43454 | Msa1437000:CDS |
| TGTTTCTAGAGTACCATGTT+TGG | 0.425256 | tig0028065:+39483 | None:intergenic |
| CAGCTTCCTGAATTTGATCA+AGG | 0.441323 | tig0028065:-40185 | Msa1437000:CDS |
| TTTGTTTGAAGTTGATAATT+GGG | 0.443503 | tig0028065:+39383 | None:intergenic |
| AGAAACTCGGTAGATGAGTT+AGG | 0.444243 | tig0028065:+43743 | None:intergenic |
| GATGAGTTAGGTTGTGAAGA+GGG | 0.463824 | tig0028065:+43755 | None:intergenic |
| GTTGTTTGAGCACTGGGAAC+CGG | 0.465176 | tig0028065:+39656 | None:intergenic |
| GTTTGTTTCAACTTATGAGC+AGG | 0.471293 | tig0028065:-39091 | Msa1437000:three_prime_UTR |
| AGTTGCCGCAGGCGACTAGC+TGG | 0.499072 | tig0028065:-40155 | Msa1437000:CDS |
| GATGTTCCTGATCTTGGTCT+CGG | 0.501086 | tig0028065:-39305 | Msa1437000:CDS |
| ATTATTGGAGGATGTCTAGT+AGG | 0.503531 | tig0028065:+39560 | None:intergenic |
| GGAACCGGCTCGGCTGATCT+CGG | 0.510225 | tig0028065:+39671 | None:intergenic |
| AAATTGTGTTGTTTGAGCAC+TGG | 0.511683 | tig0028065:+39649 | None:intergenic |
| AATTCCGAGATCAGCCGAGC+CGG | 0.516665 | tig0028065:-39675 | Msa1437000:CDS |
| GGTACAAAACCTGAACTCAT+TGG | 0.518582 | tig0028065:+43782 | None:intergenic |
| TCGTAACTGTTTGTCGCCCG+AGG | 0.521144 | tig0028065:-39327 | Msa1437000:CDS |
| CAAAGGTAATAACTTTCTGA+TGG | 0.523398 | tig0028065:-39741 | Msa1437000:CDS |
| ACCAAGATCAGGAACATCCT+CGG | 0.523631 | tig0028065:+39310 | None:intergenic |
| AATTGTGTTGTTTGAGCACT+GGG | 0.525172 | tig0028065:+39650 | None:intergenic |
| CCAAGATCAGGAACATCCTC+GGG | 0.531635 | tig0028065:+39311 | None:intergenic |
| GACTAGCTGGCCATAATGAA+AGG | 0.532987 | tig0028065:-40142 | Msa1437000:CDS |
| CAAATCAAACCTAATGCTGT+TGG | 0.533702 | tig0028065:-43650 | Msa1437000:CDS |
| AGCAAACAAGAGTATTAAAG+TGG | 0.540068 | tig0028065:+39209 | None:intergenic |
| TCTGTGTCAACAGATAATAA+TGG | 0.540600 | tig0028065:-39764 | Msa1437000:intron |
| CTCTTCTGTCAAACCAAACA+TGG | 0.546120 | tig0028065:-39496 | Msa1437000:CDS |
| AGTAGATCTGAGTGGTGCTA+AGG | 0.546255 | tig0028065:-43531 | Msa1437000:CDS |
| AGTATTAAAGTGGCCAGTAA+TGG | 0.550747 | tig0028065:+39219 | None:intergenic |
| TTGGCCTATGTGAACAATGT+GGG | 0.552994 | tig0028065:-39029 | Msa1437000:three_prime_UTR |
| TTGAGCACTGGGAACCGGCT+CGG | 0.557428 | tig0028065:+39661 | None:intergenic |
| AGATGAGTTAGGTTGTGAAG+AGG | 0.562239 | tig0028065:+43754 | None:intergenic |
| CTCAAACAACACAATTTACC+TGG | 0.562586 | tig0028065:-39643 | Msa1437000:CDS |
| CTACAAGGAACAAACTTCCA+TGG | 0.563190 | tig0028065:-39587 | Msa1437000:CDS |
| TTCATCATCAGGAATGAAGA+GGG | 0.564365 | tig0028065:-43594 | Msa1437000:CDS |
| AAACCAGAAACAACAACAGA+AGG | 0.564585 | tig0028065:+43464 | None:intergenic |
| TGGTCTCGGTCAAAATTCGC+AGG | 0.566753 | tig0028065:-39291 | Msa1437000:CDS |
| TCAACAGATAATAATGGCAA+AGG | 0.567701 | tig0028065:-39758 | Msa1437000:intron |
| AAGTTGAAACAAACAAAAGC+AGG | 0.570923 | tig0028065:+39100 | None:intergenic |
| AGCTTCCTGAATTTGATCAA+GGG | 0.572503 | tig0028065:-40184 | Msa1437000:CDS |
| TTAGGTTGTGAAGAGGGAGA+AGG | 0.574494 | tig0028065:+43761 | None:intergenic |
| CTTTAATCCATCAAGAAACT+CGG | 0.578305 | tig0028065:+43730 | None:intergenic |
| GCTATTCATAGCGATCTTCG+TGG | 0.587187 | tig0028065:-39269 | Msa1437000:CDS |
| AAGGGAAACGAAGTTGCCGC+AGG | 0.588964 | tig0028065:-40166 | Msa1437000:CDS |
| TTGTAGTTATCCATTATTGG+AGG | 0.589950 | tig0028065:+39548 | None:intergenic |
| AAACCTAATGCTGTTGGTGT+TGG | 0.593485 | tig0028065:-43644 | Msa1437000:CDS |
| TATGTGAAACTTTCAGACAT+GGG | 0.598364 | tig0028065:-38995 | None:intergenic |
| CTTCATCATCAGGAATGAAG+AGG | 0.604436 | tig0028065:-43595 | Msa1437000:CDS |
| GTATGTGAAACTTTCAGACA+TGG | 0.604908 | tig0028065:-38996 | None:intergenic |
| ATTGGAGGATGTCTAGTAGG+AGG | 0.622162 | tig0028065:+39563 | None:intergenic |
| AAGTTGTTCATCTCAACACT+TGG | 0.626493 | tig0028065:+39452 | None:intergenic |
| TTTGGCCTATGTGAACAATG+TGG | 0.627820 | tig0028065:-39030 | Msa1437000:three_prime_UTR |
| GGTGAGGTCAACGTTTCACA+AGG | 0.632696 | tig0028065:-39248 | Msa1437000:CDS |
| CATGTGACCTGCTACACTGT+TGG | 0.632750 | tig0028065:+43426 | None:intergenic |
| TCAACCCACATTGTTCACAT+AGG | 0.637989 | tig0028065:+39025 | None:intergenic |
| TCATAGCGATCTTCGTGGTG+AGG | 0.646398 | tig0028065:-39264 | Msa1437000:CDS |
| TATGGCCAGCTAGTCGCCTG+CGG | 0.649873 | tig0028065:+40150 | None:intergenic |
| ATTTGTGAAATTATAACTGG+TGG | 0.659707 | tig0028065:-39183 | Msa1437000:three_prime_UTR |
| ATGTGAAACTTTCAGACATG+GGG | 0.660576 | tig0028065:-38994 | None:intergenic |
| GATGTCTAGTAGGAGGACCA+TGG | 0.664660 | tig0028065:+39570 | None:intergenic |
| TCATCATCAGGAATGAAGAG+GGG | 0.691128 | tig0028065:-43593 | Msa1437000:CDS |
| TAGCTGGCCATAATGAAAGG+CGG | 0.700178 | tig0028065:-40139 | Msa1437000:CDS |
| GGTTGTAAAGTAGATCTGAG+TGG | 0.784110 | tig0028065:-43539 | Msa1437000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATATATATTGTTTGT+TGG | - | tig0028065:39562-39581 | Msa1437000:CDS | 10.0% |
| !!! | ATTTTCTATTTCAATTTAAA+AGG | - | tig0028065:40151-40170 | Msa1437000:CDS | 10.0% |
| !! | AAATATCTTTAAATTTCAAT+TGG | + | tig0028065:40225-40244 | None:intergenic | 10.0% |
| !!! | TTTGTAATTTGTTTAAATAA+AGG | + | tig0028065:41053-41072 | None:intergenic | 10.0% |
| !!! | TATTTTTGCTATTAATAAAT+AGG | - | tig0028065:41257-41276 | Msa1437000:intron | 10.0% |
| !!! | ATTTTTGCTATTAATAAATA+GGG | - | tig0028065:41258-41277 | Msa1437000:intron | 10.0% |
| !! | CTTTGATAAAATAAATAAAA+AGG | + | tig0028065:42780-42799 | None:intergenic | 10.0% |
| !!! | ATGAATAAATTTTATTACTT+TGG | + | tig0028065:42862-42881 | None:intergenic | 10.0% |
| !!! | ATAAAATTTATTCATTTTCT+TGG | - | tig0028065:42867-42886 | Msa1437000:intron | 10.0% |
| !!! | ATTTTATTATTCTACAAATA+AGG | + | tig0028065:42985-43004 | None:intergenic | 10.0% |
| !! | AAATTATAAACAAAGTAGAA+TGG | + | tig0028065:39399-39418 | None:intergenic | 15.0% |
| !! | AAGAAAAAAAACACTAAAAA+AGG | + | tig0028065:39444-39463 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTTCTTTCTATAA+TGG | - | tig0028065:39451-39470 | Msa1437000:CDS | 15.0% |
| !!! | GTTTTTTTTCTTTCTATAAT+GGG | - | tig0028065:39452-39471 | Msa1437000:CDS | 15.0% |
| !! | ATTTCATTTGAATTTGATAA+TGG | - | tig0028065:39649-39668 | Msa1437000:CDS | 15.0% |
| !!! | ATAATTTGTAAATGTATGTT+TGG | - | tig0028065:40188-40207 | Msa1437000:CDS | 15.0% |
| !!! | ATGTTTCAAATAAATGTTTT+GGG | - | tig0028065:40521-40540 | Msa1437000:intron | 15.0% |
| !! | AAATGCTATAAAATTAAGTA+GGG | + | tig0028065:41330-41349 | None:intergenic | 15.0% |
| !! | AAAATGCTATAAAATTAAGT+AGG | + | tig0028065:41331-41350 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | tig0028065:41543-41562 | Msa1437000:intron | 15.0% |
| !! | ATGATATAAAGTTATTAGTA+AGG | + | tig0028065:41937-41956 | None:intergenic | 15.0% |
| !! | TCTCCATATATATAAAAATT+TGG | + | tig0028065:42364-42383 | None:intergenic | 15.0% |
| !!! | AATTTTTATATATATGGAGA+AGG | - | tig0028065:42364-42383 | Msa1437000:intron | 15.0% |
| !! | CTAAATAAATAACACTTAAA+TGG | + | tig0028065:42748-42767 | None:intergenic | 15.0% |
| !!! | ATTTTATCAAAGTTCAAATA+AGG | - | tig0028065:42788-42807 | Msa1437000:intron | 15.0% |
| !! | AATGAAATGATTAATAGTTA+AGG | - | tig0028065:42814-42833 | Msa1437000:intron | 15.0% |
| !! | ATGAAATGATTAATAGTTAA+GGG | - | tig0028065:42815-42834 | Msa1437000:intron | 15.0% |
| !! | TAAAAAAGACAAAATGAGTT+AGG | + | tig0028065:39513-39532 | None:intergenic | 20.0% |
| !! | TTCCTAGTAAAAATAAATGT+AGG | + | tig0028065:39753-39772 | None:intergenic | 20.0% |
| !!! | TCATAAAATTCTGAAATTTC+AGG | + | tig0028065:39824-39843 | None:intergenic | 20.0% |
| !! | TCCAAATTTCAAAGAAAAAA+TGG | - | tig0028065:39856-39875 | Msa1437000:intron | 20.0% |
| !!! | ACCATTTTTTCTTTGAAATT+TGG | + | tig0028065:39860-39879 | None:intergenic | 20.0% |
| !! | TATTTCAATTTAAAAGGCTT+TGG | - | tig0028065:40157-40176 | Msa1437000:CDS | 20.0% |
| !!! | CATTACATACCAAATATTTT+AGG | - | tig0028065:40385-40404 | Msa1437000:intron | 20.0% |
| !!! | CATGTTTCAAATAAATGTTT+TGG | - | tig0028065:40520-40539 | Msa1437000:intron | 20.0% |
| !! | GTTCAAAATTTAAGAGTTTA+AGG | + | tig0028065:41418-41437 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | - | tig0028065:41672-41691 | Msa1437000:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | - | tig0028065:41673-41692 | Msa1437000:intron | 20.0% |
| !!! | GAGCCAAATTTTTATATATA+TGG | - | tig0028065:42358-42377 | Msa1437000:intron | 20.0% |
| !! | AATAACTACGACATTTAAAA+AGG | - | tig0028065:42898-42917 | Msa1437000:intron | 20.0% |
| !! | ATAACTACGACATTTAAAAA+GGG | - | tig0028065:42899-42918 | Msa1437000:intron | 20.0% |
| !! | AAGCTGAAAACATAAATATT+TGG | + | tig0028065:42954-42973 | None:intergenic | 20.0% |
| !! | TGTAGAATAATAAAATTGCT+TGG | - | tig0028065:42989-43008 | Msa1437000:intron | 20.0% |
| !! | TTCATACCAAAAAATTTCTA+TGG | - | tig0028065:43065-43084 | Msa1437000:intron | 20.0% |
| !! | TCATACCAAAAAATTTCTAT+GGG | - | tig0028065:43066-43085 | Msa1437000:intron | 20.0% |
| !!! | TTTGTTTGAAGTTGATAATT+GGG | + | tig0028065:43396-43415 | None:intergenic | 20.0% |
| !!! | ATTTGTTTGAAGTTGATAAT+TGG | + | tig0028065:43397-43416 | None:intergenic | 20.0% |
| !!! | TACTAGTGCTTATTTTATTT+TGG | - | tig0028065:43642-43661 | Msa1437000:CDS | 20.0% |
| !!! | CTTATTTTATTTTGGAACTT+TGG | - | tig0028065:43650-43669 | Msa1437000:CDS | 20.0% |
| !!! | TTTCTTGATGGATTAAAGTT+TGG | - | tig0028065:39051-39070 | Msa1437000:three_prime_UTR | 25.0% |
| !!! | TTTTCTTTCTATAATGGGTA+TGG | - | tig0028065:39457-39476 | Msa1437000:CDS | 25.0% |
| ! | ATAGATTTCTTAGATGTTGT+TGG | - | tig0028065:39615-39634 | Msa1437000:CDS | 25.0% |
| ! | TCCTAATGTTCTTCTATTAT+TGG | - | tig0028065:39686-39705 | Msa1437000:CDS | 25.0% |
| ! | TCCAATAATAGAAGAACATT+AGG | + | tig0028065:39690-39709 | None:intergenic | 25.0% |
| !!! | TGCCTACATTTATTTTTACT+AGG | - | tig0028065:39748-39767 | Msa1437000:CDS | 25.0% |
| !!! | TCTTTGAAATTTGGAAAGAA+TGG | + | tig0028065:39851-39870 | None:intergenic | 25.0% |
| !! | TAATAAATAACTTGCCATGT+GGG | + | tig0028065:39932-39951 | None:intergenic | 25.0% |
| !! | TTAATAAATAACTTGCCATG+TGG | + | tig0028065:39933-39952 | None:intergenic | 25.0% |
| !!! | CAACATCTTACACTTTTTTT+GGG | + | tig0028065:40251-40270 | None:intergenic | 25.0% |
| !!! | ACAACATCTTACACTTTTTT+TGG | + | tig0028065:40252-40271 | None:intergenic | 25.0% |
| !!! | AGTGTAAGATGTTGTTTTAT+TGG | - | tig0028065:40257-40276 | Msa1437000:intron | 25.0% |
| !! | TGGATAATTTGTGATTACTT+AGG | - | tig0028065:40277-40296 | Msa1437000:intron | 25.0% |
| ! | ATTTGTGATTACTTAGGAAA+AGG | - | tig0028065:40283-40302 | Msa1437000:intron | 25.0% |
| ! | TTTGAAAAGGCAAATGTATT+TGG | - | tig0028065:40356-40375 | Msa1437000:intron | 25.0% |
| ! | AGTTGAAGTCCTAAAATATT+TGG | + | tig0028065:40397-40416 | None:intergenic | 25.0% |
| !!! | TCTTCTTTCTTTGTTGTTTT+AGG | - | tig0028065:40467-40486 | Msa1437000:intron | 25.0% |
| ! | TATACTAAAGATGATGCTTA+TGG | - | tig0028065:40575-40594 | Msa1437000:intron | 25.0% |
| ! | ATACTAAAGATGATGCTTAT+GGG | - | tig0028065:40576-40595 | Msa1437000:intron | 25.0% |
| !! | ATTTTGTATATTAAACCTCG+AGG | - | tig0028065:40645-40664 | Msa1437000:intron | 25.0% |
| ! | TGAATTACATCTTAGGTTTA+GGG | - | tig0028065:40730-40749 | Msa1437000:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | + | tig0028065:41389-41408 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | + | tig0028065:41390-41409 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | - | tig0028065:41706-41725 | Msa1437000:intron | 25.0% |
| ! | TAAGTAGAGACTAAATTACA+AGG | - | tig0028065:41748-41767 | Msa1437000:intron | 25.0% |
| ! | GAATATTTGCTTATTGTTGT+CGG | - | tig0028065:41844-41863 | Msa1437000:intron | 25.0% |
| !!! | ACAATGAAGGATTTAGTTTT+TGG | - | tig0028065:41885-41904 | Msa1437000:intron | 25.0% |
| !!! | TTTAGTTTTTGGTGCTTAAA+TGG | - | tig0028065:41896-41915 | Msa1437000:intron | 25.0% |
| !!! | TTAGTTTTTGGTGCTTAAAT+GGG | - | tig0028065:41897-41916 | Msa1437000:intron | 25.0% |
| ! | CTATAAGAATTGGTACTTAT+AGG | + | tig0028065:42092-42111 | None:intergenic | 25.0% |
| ! | TAGCTTATCTCTATAAGAAT+TGG | + | tig0028065:42102-42121 | None:intergenic | 25.0% |
| ! | ATTAAGAAATTGAAATGCAG+GGG | + | tig0028065:42279-42298 | None:intergenic | 25.0% |
| ! | CATTAAGAAATTGAAATGCA+GGG | + | tig0028065:42280-42299 | None:intergenic | 25.0% |
| ! | TCATTAAGAAATTGAAATGC+AGG | + | tig0028065:42281-42300 | None:intergenic | 25.0% |
| !! | TTTTTAAACTCAAACTGACT+TGG | + | tig0028065:42422-42441 | None:intergenic | 25.0% |
| ! | AAAGGAATAATTTCTAACCA+AGG | + | tig0028065:42721-42740 | None:intergenic | 25.0% |
| ! | TAACACTTAAATGGTAACAA+AGG | + | tig0028065:42739-42758 | None:intergenic | 25.0% |
| !!! | CATTTCCCATAGAAATTTTT+TGG | + | tig0028065:43074-43093 | None:intergenic | 25.0% |
| ! | TCATTGTAGTTATCCATTAT+TGG | + | tig0028065:43234-43253 | None:intergenic | 25.0% |
| !!! | AACAACTTGTTGAATTTCAA+TGG | - | tig0028065:43339-43358 | Msa1437000:intron | 25.0% |
| ! | GTCATTTGTGAAATTATAAC+TGG | - | tig0028065:43590-43609 | Msa1437000:CDS | 25.0% |
| ! | ATTTGTGAAATTATAACTGG+TGG | - | tig0028065:43593-43612 | Msa1437000:CDS | 25.0% |
| CTTTAATCCATCAAGAAACT+CGG | + | tig0028065:39049-39068 | None:intergenic | 30.0% | |
| TGGTCAAAAAATCTACTTTG+AGG | - | tig0028065:39071-39090 | Msa1437000:three_prime_UTR | 30.0% | |
| ! | ACATGCTTTTATGCAAATGA+TGG | - | tig0028065:39783-39802 | Msa1437000:intron | 30.0% |
| TATTCATTCACCATTATACC+TGG | - | tig0028065:39976-39995 | Msa1437000:intron | 30.0% | |
| TCTTAATGAAGGATAAGCAT+GGG | - | tig0028065:40067-40086 | Msa1437000:intron | 30.0% | |
| ! | TTTAAAAGGCTTTGGTTGAT+TGG | - | tig0028065:40165-40184 | Msa1437000:CDS | 30.0% |
| ! | AGCGAACTAAAGTTTTTATC+AGG | - | tig0028065:40323-40342 | Msa1437000:intron | 30.0% |
| !! | AGGAAGTGTAGATTTTGAAA+AGG | - | tig0028065:40343-40362 | Msa1437000:intron | 30.0% |
| AGTAAGAGAGTGAAGTTTAT+TGG | - | tig0028065:40604-40623 | Msa1437000:intron | 30.0% | |
| GTGAATTACATCTTAGGTTT+AGG | - | tig0028065:40729-40748 | Msa1437000:intron | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | tig0028065:41299-41318 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | tig0028065:41300-41319 | None:intergenic | 30.0% |
| CAAGATTAGAACACTATGAA+AGG | - | tig0028065:41450-41469 | Msa1437000:intron | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | - | tig0028065:41705-41724 | Msa1437000:intron | 30.0% | |
| ATTACAAGGTCGCTATTTAT+AGG | - | tig0028065:41762-41781 | Msa1437000:intron | 30.0% | |
| TTACAAGGTCGCTATTTATA+GGG | - | tig0028065:41763-41782 | Msa1437000:intron | 30.0% | |
| CTTATGAAAAAGTTAGACGT+AGG | + | tig0028065:42309-42328 | None:intergenic | 30.0% | |
| !!! | CTTTTTCATAAGCATCGATA+AGG | - | tig0028065:42317-42336 | Msa1437000:intron | 30.0% |
| TCTGTGTCAACAGATAATAA+TGG | - | tig0028065:43012-43031 | Msa1437000:intron | 30.0% | |
| TCAACAGATAATAATGGCAA+AGG | - | tig0028065:43018-43037 | Msa1437000:intron | 30.0% | |
| CAAAGGTAATAACTTTCTGA+TGG | - | tig0028065:43035-43054 | Msa1437000:intron | 30.0% | |
| TTGTAGTTATCCATTATTGG+AGG | + | tig0028065:43231-43250 | None:intergenic | 30.0% | |
| TTCAAACAAATGCTTCTTCT+TGG | - | tig0028065:43406-43425 | Msa1437000:intron | 30.0% | |
| !! | TGCTTCTTCTTGGTTTTTAA+AGG | - | tig0028065:43416-43435 | Msa1437000:intron | 30.0% |
| !! | GCTTCTTCTTGGTTTTTAAA+GGG | - | tig0028065:43417-43436 | Msa1437000:intron | 30.0% |
| !! | AGCAAACAAGAGTATTAAAG+TGG | + | tig0028065:43570-43589 | None:intergenic | 30.0% |
| GAAATTATAACTGGTGGTAT+TGG | - | tig0028065:43599-43618 | Msa1437000:CDS | 30.0% | |
| AAGTTGAAACAAACAAAAGC+AGG | + | tig0028065:43679-43698 | None:intergenic | 30.0% | |
| ! | TATCATTTTGTGGAACTTTC+AGG | - | tig0028065:43713-43732 | Msa1437000:CDS | 30.0% |
| ! | CTTTCAGGCATTATTTGTTT+TGG | - | tig0028065:43728-43747 | Msa1437000:CDS | 30.0% |
| CAAATCAAACCTAATGCTGT+TGG | - | tig0028065:39126-39145 | Msa1437000:three_prime_UTR | 35.0% | |
| TCTTCATCATCTTCATCATC+AGG | - | tig0028065:39171-39190 | Msa1437000:three_prime_UTR | 35.0% | |
| TTCATCATCAGGAATGAAGA+GGG | - | tig0028065:39182-39201 | Msa1437000:three_prime_UTR | 35.0% | |
| AAACCAGAAACAACAACAGA+AGG | + | tig0028065:39315-39334 | None:intergenic | 35.0% | |
| !! | TTCTGTTGTTGTTTCTGGTT+TGG | - | tig0028065:39314-39333 | Msa1437000:CDS | 35.0% |
| !! | TTTCTATAATGGGTATGGTC+TGG | - | tig0028065:39462-39481 | Msa1437000:CDS | 35.0% |
| ATGAGTTAGGCAAAACAAGA+AGG | + | tig0028065:39500-39519 | None:intergenic | 35.0% | |
| GTTCTTCTATTATTGGAGAC+TGG | - | tig0028065:39693-39712 | Msa1437000:CDS | 35.0% | |
| ATTGACATCAACTTCTCAAG+GGG | + | tig0028065:39884-39903 | None:intergenic | 35.0% | |
| GATTGACATCAACTTCTCAA+GGG | + | tig0028065:39885-39904 | None:intergenic | 35.0% | |
| AGATTGACATCAACTTCTCA+AGG | + | tig0028065:39886-39905 | None:intergenic | 35.0% | |
| GTAGAAAAAATGATCCCACA+TGG | - | tig0028065:39915-39934 | Msa1437000:intron | 35.0% | |
| AAAGGTTCTTCCAGGTATAA+TGG | + | tig0028065:39989-40008 | None:intergenic | 35.0% | |
| TAAAGCTAAAAGGTTCTTCC+AGG | + | tig0028065:39997-40016 | None:intergenic | 35.0% | |
| GTCTTAATGAAGGATAAGCA+TGG | - | tig0028065:40066-40085 | Msa1437000:intron | 35.0% | |
| TATATTAAACCTCGAGGCAT+AGG | - | tig0028065:40651-40670 | Msa1437000:intron | 35.0% | |
| GATGTAATTCACACATCCTT+TGG | + | tig0028065:40721-40740 | None:intergenic | 35.0% | |
| GGATGTGTGAATTACATCTT+AGG | - | tig0028065:40723-40742 | Msa1437000:intron | 35.0% | |
| !!! | CTTAGGTTTAGGGTTTTTTG+TGG | - | tig0028065:40740-40759 | Msa1437000:intron | 35.0% |
| !! | GTGTTGTTGTTCTTGTTGTT+CGG | - | tig0028065:40899-40918 | Msa1437000:intron | 35.0% |
| ACATCACTTGTGTGACATTA+TGG | - | tig0028065:40980-40999 | Msa1437000:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | tig0028065:41315-41334 | None:intergenic | 35.0% | |
| ATATGAGATCCTCTTCTCAA+TGG | - | tig0028065:42034-42053 | Msa1437000:intron | 35.0% | |
| TATGAGATCCTCTTCTCAAT+GGG | - | tig0028065:42035-42054 | Msa1437000:intron | 35.0% | |
| CGTTGTAGACATATCCATAA+TGG | + | tig0028065:42063-42082 | None:intergenic | 35.0% | |
| GGGGTTAATTTCTATATGTG+TGG | + | tig0028065:42260-42279 | None:intergenic | 35.0% | |
| !!! | ATAAGCATCGATAAGGCTTT+TGG | - | tig0028065:42324-42343 | Msa1437000:intron | 35.0% |
| ! | GAGAAGGTCTTATGAATTAG+AGG | - | tig0028065:42380-42399 | Msa1437000:intron | 35.0% |
| TTGAGATAAAAACGATCCCA+CGG | + | tig0028065:42529-42548 | None:intergenic | 35.0% | |
| AGCTTCCTGAATTTGATCAA+GGG | - | tig0028065:42592-42611 | Msa1437000:intron | 35.0% | |
| ATTTCTAACCAAGGTAGAAG+AGG | + | tig0028065:42712-42731 | None:intergenic | 35.0% | |
| !! | AATTGTGTTGTTTGAGCACT+GGG | + | tig0028065:43129-43148 | None:intergenic | 35.0% |
| !! | AAATTGTGTTGTTTGAGCAC+TGG | + | tig0028065:43130-43149 | None:intergenic | 35.0% |
| CTCAAACAACACAATTTACC+TGG | - | tig0028065:43133-43152 | Msa1437000:intron | 35.0% | |
| ATTATTGGAGGATGTCTAGT+AGG | + | tig0028065:43219-43238 | None:intergenic | 35.0% | |
| TACTAGACATCCTCCAATAA+TGG | - | tig0028065:43218-43237 | Msa1437000:intron | 35.0% | |
| !! | TGTTTCTAGAGTACCATGTT+TGG | + | tig0028065:43296-43315 | None:intergenic | 35.0% |
| AAGTTGTTCATCTCAACACT+TGG | + | tig0028065:43327-43346 | None:intergenic | 35.0% | |
| AGTATTAAAGTGGCCAGTAA+TGG | + | tig0028065:43560-43579 | None:intergenic | 35.0% | |
| GTTTGTTTCAACTTATGAGC+AGG | - | tig0028065:43685-43704 | Msa1437000:CDS | 35.0% | |
| ! | GCAGGATCTTTATCATTTTG+TGG | - | tig0028065:43703-43722 | Msa1437000:CDS | 35.0% |
| ! | GATGAGTTAGGTTGTGAAGA+GGG | + | tig0028065:39024-39043 | None:intergenic | 40.0% |
| ! | AGATGAGTTAGGTTGTGAAG+AGG | + | tig0028065:39025-39044 | None:intergenic | 40.0% |
| AGAAACTCGGTAGATGAGTT+AGG | + | tig0028065:39036-39055 | None:intergenic | 40.0% | |
| TCATCTACCGAGTTTCTTGA+TGG | - | tig0028065:39039-39058 | Msa1437000:three_prime_UTR | 40.0% | |
| AAACCTAATGCTGTTGGTGT+TGG | - | tig0028065:39132-39151 | Msa1437000:three_prime_UTR | 40.0% | |
| CTTCATCATCAGGAATGAAG+AGG | - | tig0028065:39181-39200 | Msa1437000:three_prime_UTR | 40.0% | |
| TCATCATCAGGAATGAAGAG+GGG | - | tig0028065:39183-39202 | Msa1437000:three_prime_UTR | 40.0% | |
| GGTTGTAAAGTAGATCTGAG+TGG | - | tig0028065:39237-39256 | Msa1437000:CDS | 40.0% | |
| !! | TCTCCTTCTGTTGTTGTTTC+TGG | - | tig0028065:39309-39328 | Msa1437000:CDS | 40.0% |
| !! | TTGTTTCTGGTTTGGAGCAA+AGG | - | tig0028065:39322-39341 | Msa1437000:CDS | 40.0% |
| TTGACATCAACTTCTCAAGG+GGG | + | tig0028065:39883-39902 | None:intergenic | 40.0% | |
| GTCACATGGCTAAAGCTAAA+AGG | + | tig0028065:40007-40026 | None:intergenic | 40.0% | |
| TGTCCTACTGGTAAAAGAAG+TGG | - | tig0028065:40028-40047 | Msa1437000:intron | 40.0% | |
| GTCCTACTGGTAAAAGAAGT+GGG | - | tig0028065:40029-40048 | Msa1437000:intron | 40.0% | |
| ! | TACCCACTTCTTTTACCAGT+AGG | + | tig0028065:40034-40053 | None:intergenic | 40.0% |
| TAAAAGAAGTGGGTAGTGAG+AGG | - | tig0028065:40039-40058 | Msa1437000:intron | 40.0% | |
| AAAAGAAGTGGGTAGTGAGA+GGG | - | tig0028065:40040-40059 | Msa1437000:intron | 40.0% | |
| !! | GAGAGGGTTAGTCTTAATGA+AGG | - | tig0028065:40056-40075 | Msa1437000:intron | 40.0% |
| GTAATTCACACATCCTTTGG+TGG | + | tig0028065:40718-40737 | None:intergenic | 40.0% | |
| !!! | TTTAGGGTTTTTTGTGGCTC+TGG | - | tig0028065:40746-40765 | Msa1437000:intron | 40.0% |
| !!! | TTAGGGTTTTTTGTGGCTCT+GGG | - | tig0028065:40747-40766 | Msa1437000:intron | 40.0% |
| !!! | GAGTTCTCTCTGGCTTTTAT+GGG | - | tig0028065:40806-40825 | Msa1437000:intron | 40.0% |
| ! | GTATTCCCTCTTTGGAAGTT+AGG | - | tig0028065:40833-40852 | Msa1437000:intron | 40.0% |
| ! | GCTGTTGTTGCAAGCATTTT+GGG | - | tig0028065:40921-40940 | Msa1437000:intron | 40.0% |
| ! | CTGTTGTTGCAAGCATTTTG+GGG | - | tig0028065:40922-40941 | Msa1437000:intron | 40.0% |
| !!! | AGCATTTTGGGGCTTTTCTT+TGG | - | tig0028065:40933-40952 | Msa1437000:intron | 40.0% |
| !!! | GCATTTTGGGGCTTTTCTTT+GGG | - | tig0028065:40934-40953 | Msa1437000:intron | 40.0% |
| GAAAACAACGGACAACACTT+GGG | + | tig0028065:41165-41184 | None:intergenic | 40.0% | |
| GCACGAGAAAAACTACAAGA+GGG | + | tig0028065:41228-41247 | None:intergenic | 40.0% | |
| TGCACGAGAAAAACTACAAG+AGG | + | tig0028065:41229-41248 | None:intergenic | 40.0% | |
| TATGGAACCAACAAAGAGAG+AGG | - | tig0028065:42005-42024 | Msa1437000:intron | 40.0% | |
| ATGGAACCAACAAAGAGAGA+GGG | - | tig0028065:42006-42025 | Msa1437000:intron | 40.0% | |
| TAATGGTACCCATTGAGAAG+AGG | + | tig0028065:42046-42065 | None:intergenic | 40.0% | |
| CTTCTCAATGGGTACCATTA+TGG | - | tig0028065:42046-42065 | Msa1437000:intron | 40.0% | |
| TATGGATATGTCTACAACGC+AGG | - | tig0028065:42064-42083 | Msa1437000:intron | 40.0% | |
| TAGAGATAAGCTAACCCCAT+TGG | - | tig0028065:42109-42128 | Msa1437000:intron | 40.0% | |
| AGAGATAAGCTAACCCCATT+GGG | - | tig0028065:42110-42129 | Msa1437000:intron | 40.0% | |
| CTGTGCAAGTTCTATCAAAG+AGG | + | tig0028065:42564-42583 | None:intergenic | 40.0% | |
| CTCTTTGATAGAACTTGCAC+AGG | - | tig0028065:42562-42581 | Msa1437000:intron | 40.0% | |
| CAGCTTCCTGAATTTGATCA+AGG | - | tig0028065:42591-42610 | Msa1437000:intron | 40.0% | |
| CGTTTCCCTTGATCAAATTC+AGG | + | tig0028065:42600-42619 | None:intergenic | 40.0% | |
| GTTAAAAATGAGCTCGGTTG+GGG | + | tig0028065:42669-42688 | None:intergenic | 40.0% | |
| GGTTAAAAATGAGCTCGGTT+GGG | + | tig0028065:42670-42689 | None:intergenic | 40.0% | |
| AGGTTAAAAATGAGCTCGGT+TGG | + | tig0028065:42671-42690 | None:intergenic | 40.0% | |
| ! | AAGGTAGAAGAGGAGAGTTT+TGG | + | tig0028065:42702-42721 | None:intergenic | 40.0% |
| AAAACTCTCCTCTTCTACCT+TGG | - | tig0028065:42701-42720 | Msa1437000:intron | 40.0% | |
| CGACATTTAAAAAGGGACGA+AGG | - | tig0028065:42906-42925 | Msa1437000:intron | 40.0% | |
| CCTTGTAGGAAAAAGTTCGA+TGG | + | tig0028065:43177-43196 | None:intergenic | 40.0% | |
| !! | CCATCGAACTTTTTCCTACA+AGG | - | tig0028065:43174-43193 | Msa1437000:intron | 40.0% |
| ! | CATGGAAGTTTGTTCCTTGT+AGG | + | tig0028065:43191-43210 | None:intergenic | 40.0% |
| CTACAAGGAACAAACTTCCA+TGG | - | tig0028065:43189-43208 | Msa1437000:intron | 40.0% | |
| CTCTTCTGTCAAACCAAACA+TGG | - | tig0028065:43280-43299 | Msa1437000:intron | 40.0% | |
| TTTGGCCTATGTGAACAATG+TGG | - | tig0028065:43746-43765 | Msa1437000:CDS | 40.0% | |
| TTGGCCTATGTGAACAATGT+GGG | - | tig0028065:43747-43766 | Msa1437000:CDS | 40.0% | |
| TCAACCCACATTGTTCACAT+AGG | + | tig0028065:43754-43773 | None:intergenic | 40.0% | |
| ! | TTAGGTTGTGAAGAGGGAGA+AGG | + | tig0028065:39018-39037 | None:intergenic | 45.0% |
| GGGGAAATAATCATCCACGT+AGG | - | tig0028065:39202-39221 | Msa1437000:three_prime_UTR | 45.0% | |
| ! | AGTAGATCTGAGTGGTGCTA+AGG | - | tig0028065:39245-39264 | Msa1437000:CDS | 45.0% |
| TACCAGTAGGACATGTCACA+TGG | + | tig0028065:40021-40040 | None:intergenic | 45.0% | |
| CAATGCATGAACACCACCAA+AGG | - | tig0028065:40702-40721 | Msa1437000:intron | 45.0% | |
| !!! | GGAGTTCTCTCTGGCTTTTA+TGG | - | tig0028065:40805-40824 | Msa1437000:intron | 45.0% |
| !!! | TTCTCTCTGGCTTTTATGGG+TGG | - | tig0028065:40809-40828 | Msa1437000:intron | 45.0% |
| !!! | TCTCTCTGGCTTTTATGGGT+GGG | - | tig0028065:40810-40829 | Msa1437000:intron | 45.0% |
| CCAGACCTAACTTCCAAAGA+GGG | + | tig0028065:40841-40860 | None:intergenic | 45.0% | |
| ! | CCTCTTTGGAAGTTAGGTCT+GGG | - | tig0028065:40839-40858 | Msa1437000:intron | 45.0% |
| ! | GGCTGTTGTTGCAAGCATTT+TGG | - | tig0028065:40920-40939 | Msa1437000:intron | 45.0% |
| GTCACGTGACACACTATGAT+TGG | + | tig0028065:41028-41047 | None:intergenic | 45.0% | |
| GAAAACCCGTTGTCACATTG+TGG | - | tig0028065:41102-41121 | Msa1437000:intron | 45.0% | |
| GCTAACCACAATGTGACAAC+GGG | + | tig0028065:41110-41129 | None:intergenic | 45.0% | |
| GGCTAACCACAATGTGACAA+CGG | + | tig0028065:41111-41130 | None:intergenic | 45.0% | |
| ! | TGTGGTTAGCCAATGTCACA+TGG | - | tig0028065:41120-41139 | Msa1437000:intron | 45.0% |
| GTGTCAATGCCATGTGACAT+TGG | + | tig0028065:41132-41151 | None:intergenic | 45.0% | |
| CGAAAACAACGGACAACACT+TGG | + | tig0028065:41166-41185 | None:intergenic | 45.0% | |
| !! | AGTGTTGTCCGTTGTTTTCG+TGG | - | tig0028065:41166-41185 | Msa1437000:intron | 45.0% |
| !! | GTGTTGTCCGTTGTTTTCGT+GGG | - | tig0028065:41167-41186 | Msa1437000:intron | 45.0% |
| CATGCAAAACAAAGCAGGGA+AGG | + | tig0028065:41204-41223 | None:intergenic | 45.0% | |
| GGGACATGCAAAACAAAGCA+GGG | + | tig0028065:41208-41227 | None:intergenic | 45.0% | |
| AGGGACATGCAAAACAAAGC+AGG | + | tig0028065:41209-41228 | None:intergenic | 45.0% | |
| !! | ACCAAGAGCATCGACAATGA+AGG | - | tig0028065:41872-41891 | Msa1437000:intron | 45.0% |
| TCCTTCATTGTCGATGCTCT+TGG | + | tig0028065:41876-41895 | None:intergenic | 45.0% | |
| TAAGCACCCTCTCTCTTTGT+TGG | + | tig0028065:42015-42034 | None:intergenic | 45.0% | |
| GAGATAAGCTAACCCCATTG+GGG | - | tig0028065:42111-42130 | Msa1437000:intron | 45.0% | |
| !! | GACTTGGCTCTGGTTCAAAT+TGG | + | tig0028065:42406-42425 | None:intergenic | 45.0% |
| !! | AACTCAAACTGACTTGGCTC+TGG | + | tig0028065:42416-42435 | None:intergenic | 45.0% |
| ACCACACTGTTACATAACCG+TGG | - | tig0028065:42509-42528 | Msa1437000:intron | 45.0% | |
| CCACACTGTTACATAACCGT+GGG | - | tig0028065:42510-42529 | Msa1437000:intron | 45.0% | |
| ! | GACTAGCTGGCCATAATGAA+AGG | - | tig0028065:42634-42653 | Msa1437000:intron | 45.0% |
| TAGCTGGCCATAATGAAAGG+CGG | - | tig0028065:42637-42656 | Msa1437000:intron | 45.0% | |
| GCTTTCTCCGCCTTTCATTA+TGG | + | tig0028065:42647-42666 | None:intergenic | 45.0% | |
| CGCGAGGTTAAAAATGAGCT+CGG | + | tig0028065:42675-42694 | None:intergenic | 45.0% | |
| !! | TGTCGATGAGTTGTTTTGCC+AGG | + | tig0028065:43154-43173 | None:intergenic | 45.0% |
| ATTGGAGGATGTCTAGTAGG+AGG | + | tig0028065:43216-43235 | None:intergenic | 45.0% | |
| ACCAAGATCAGGAACATCCT+CGG | + | tig0028065:43469-43488 | None:intergenic | 45.0% | |
| GATGTTCCTGATCTTGGTCT+CGG | - | tig0028065:43471-43490 | Msa1437000:CDS | 45.0% | |
| ! | TTTTGACCGAGACCAAGATC+AGG | + | tig0028065:43480-43499 | None:intergenic | 45.0% |
| GCTATTCATAGCGATCTTCG+TGG | - | tig0028065:43507-43526 | Msa1437000:CDS | 45.0% | |
| CACAAGGCAAGAACCATTAC+TGG | - | tig0028065:43544-43563 | Msa1437000:intron | 45.0% | |
| !!! | ATAAGTAATTTTTTTTTATA+GGG | + | tig0028065:41357-41376 | None:intergenic | 5.0% |
| !!! | TATAAGTAATTTTTTTTTAT+AGG | + | tig0028065:41358-41377 | None:intergenic | 5.0% |
| !! | AGATTTATTATTATTTATTA+GGG | + | tig0028065:41805-41824 | None:intergenic | 5.0% |
| !! | AAGATTTATTATTATTTATT+AGG | + | tig0028065:41806-41825 | None:intergenic | 5.0% |
| !!! | TATTTTAATATTCAATTATA+TGG | - | tig0028065:41987-42006 | Msa1437000:intron | 5.0% |
| CCACCAACACCAACAGCATT+AGG | + | tig0028065:39138-39157 | None:intergenic | 50.0% | |
| !! | CCTAATGCTGTTGGTGTTGG+TGG | - | tig0028065:39135-39154 | Msa1437000:three_prime_UTR | 50.0% |
| CCTTCAACTTGACACCTACG+TGG | + | tig0028065:39219-39238 | None:intergenic | 50.0% | |
| !! | CCACGTAGGTGTCAAGTTGA+AGG | - | tig0028065:39216-39235 | Msa1437000:exon | 50.0% |
| ! | GGTTTTGCCAACAGTGTAGC+AGG | - | tig0028065:39343-39362 | Msa1437000:CDS | 50.0% |
| CATGTGACCTGCTACACTGT+TGG | + | tig0028065:39353-39372 | None:intergenic | 50.0% | |
| AGCCATGTGACATGTCCTAC+TGG | - | tig0028065:40016-40035 | Msa1437000:intron | 50.0% | |
| ! | GCGGTTTGACTTCTTGTCCT+CGG | - | tig0028065:40769-40788 | Msa1437000:intron | 50.0% |
| !!! | CTCTCTGGCTTTTATGGGTG+GGG | - | tig0028065:40811-40830 | Msa1437000:intron | 50.0% |
| ! | CCCTCTTTGGAAGTTAGGTC+TGG | - | tig0028065:40838-40857 | Msa1437000:intron | 50.0% |
| CCCAGACCTAACTTCCAAAG+AGG | + | tig0028065:40842-40861 | None:intergenic | 50.0% | |
| GTTAGGTCTGGGTTCTTTGC+CGG | - | tig0028065:40850-40869 | Msa1437000:intron | 50.0% | |
| TTTGGGGGTCGTGTTTGCTT+GGG | - | tig0028065:40875-40894 | Msa1437000:intron | 50.0% | |
| AGCGATGCCCACGAAAACAA+CGG | + | tig0028065:41177-41196 | None:intergenic | 50.0% | |
| TAAGCTAACCCCATTGGGGA+TGG | - | tig0028065:42115-42134 | Msa1437000:intron | 50.0% | |
| CTCTTAGACCATCCCCAATG+GGG | + | tig0028065:42126-42145 | None:intergenic | 50.0% | |
| GCTCTTAGACCATCCCCAAT+GGG | + | tig0028065:42127-42146 | None:intergenic | 50.0% | |
| AGCTCTTAGACCATCCCCAA+TGG | + | tig0028065:42128-42147 | None:intergenic | 50.0% | |
| CCCACGGTTATGTAACAGTG+TGG | + | tig0028065:42513-42532 | None:intergenic | 50.0% | |
| !!! | GGAGAGTTTTGGAAAACGCG+AGG | + | tig0028065:42691-42710 | None:intergenic | 50.0% |
| !! | GTTGTTTGAGCACTGGGAAC+CGG | + | tig0028065:43123-43142 | None:intergenic | 50.0% |
| GATGTCTAGTAGGAGGACCA+TGG | + | tig0028065:43209-43228 | None:intergenic | 50.0% | |
| CCAAGATCAGGAACATCCTC+GGG | + | tig0028065:43468-43487 | None:intergenic | 50.0% | |
| TGGTCTCGGTCAAAATTCGC+AGG | - | tig0028065:43485-43504 | Msa1437000:CDS | 50.0% | |
| TCATAGCGATCTTCGTGGTG+AGG | - | tig0028065:43512-43531 | Msa1437000:CDS | 50.0% | |
| GGTGAGGTCAACGTTTCACA+AGG | - | tig0028065:43528-43547 | Msa1437000:CDS | 50.0% | |
| CCAGCAAAACCTATGCCTCG+AGG | + | tig0028065:40663-40682 | None:intergenic | 55.0% | |
| ! | CCTCGAGGCATAGGTTTTGC+TGG | - | tig0028065:40660-40679 | Msa1437000:intron | 55.0% |
| !!! | GGGTTTTTTGTGGCTCTGGG+CGG | - | tig0028065:40750-40769 | Msa1437000:intron | 55.0% |
| TCTCCTGGTGGAGTTCTCTC+TGG | - | tig0028065:40796-40815 | Msa1437000:intron | 55.0% | |
| AAGCCAGAGAGAACTCCACC+AGG | + | tig0028065:40802-40821 | None:intergenic | 55.0% | |
| ! | TGGGTGGGGTATTCCCTCTT+TGG | - | tig0028065:40825-40844 | Msa1437000:intron | 55.0% |
| TGGGTTCTTTGCCGGCCTTT+GGG | - | tig0028065:40858-40877 | Msa1437000:intron | 55.0% | |
| CAAGCAAACACGACCCCCAA+AGG | + | tig0028065:40876-40895 | None:intergenic | 55.0% | |
| ! | CTTTGGGGGTCGTGTTTGCT+TGG | - | tig0028065:40874-40893 | Msa1437000:intron | 55.0% |
| AAGGGAAACGAAGTTGCCGC+AGG | - | tig0028065:42610-42629 | Msa1437000:intron | 55.0% | |
| AATTCCGAGATCAGCCGAGC+CGG | - | tig0028065:43101-43120 | Msa1437000:intron | 55.0% | |
| TCGTAACTGTTTGTCGCCCG+AGG | - | tig0028065:43449-43468 | Msa1437000:CDS | 55.0% | |
| CCCGAGGATGTTCCTGATCT+TGG | - | tig0028065:43465-43484 | Msa1437000:CDS | 55.0% | |
| CTTGTCCTCGGTCGTTCTCC+TGG | - | tig0028065:40781-40800 | Msa1437000:intron | 60.0% | |
| CTGGGTTCTTTGCCGGCCTT+TGG | - | tig0028065:40857-40876 | Msa1437000:intron | 60.0% | |
| GGGTTCTTTGCCGGCCTTTG+GGG | - | tig0028065:40859-40878 | Msa1437000:intron | 60.0% | |
| GGTTCTTTGCCGGCCTTTGG+GGG | - | tig0028065:40860-40879 | Msa1437000:intron | 60.0% | |
| CAAACACGACCCCCAAAGGC+CGG | + | tig0028065:40872-40891 | None:intergenic | 60.0% | |
| TATGGCCAGCTAGTCGCCTG+CGG | + | tig0028065:42629-42648 | None:intergenic | 60.0% | |
| !! | TTGAGCACTGGGAACCGGCT+CGG | + | tig0028065:43118-43137 | None:intergenic | 60.0% |
| GTCCTCGGTCGTTCTCCTGG+TGG | - | tig0028065:40784-40803 | Msa1437000:intron | 65.0% | |
| CTCCACCAGGAGAACGACCG+AGG | + | tig0028065:40789-40808 | None:intergenic | 65.0% | |
| AGTTGCCGCAGGCGACTAGC+TGG | - | tig0028065:42621-42640 | Msa1437000:intron | 65.0% | |
| !! | GGAACCGGCTCGGCTGATCT+CGG | + | tig0028065:43108-43127 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028065 | gene | 38997 | 43801 | 38997 | ID=Msa1437000;Name=Msa1437000 |
| tig0028065 | mRNA | 38997 | 43801 | 38997 | ID=Msa1437000-mRNA-1;Parent=Msa1437000;Name=Msa1437000-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.33|0.25|1|0|0.25|4|226|336 |
| tig0028065 | exon | 38997 | 39773 | 38997 | ID=Msa1437000-mRNA-1:exon:10455;Parent=Msa1437000-mRNA-1 |
| tig0028065 | exon | 40105 | 40214 | 40105 | ID=Msa1437000-mRNA-1:exon:10454;Parent=Msa1437000-mRNA-1 |
| tig0028065 | exon | 43434 | 43560 | 43434 | ID=Msa1437000-mRNA-1:exon:10453;Parent=Msa1437000-mRNA-1 |
| tig0028065 | exon | 43579 | 43801 | 43579 | ID=Msa1437000-mRNA-1:exon:10452;Parent=Msa1437000-mRNA-1 |
| tig0028065 | CDS | 43579 | 43801 | 43579 | ID=Msa1437000-mRNA-1:cds;Parent=Msa1437000-mRNA-1 |
| tig0028065 | CDS | 43434 | 43560 | 43434 | ID=Msa1437000-mRNA-1:cds;Parent=Msa1437000-mRNA-1 |
| tig0028065 | CDS | 40105 | 40214 | 40105 | ID=Msa1437000-mRNA-1:cds;Parent=Msa1437000-mRNA-1 |
| tig0028065 | CDS | 39223 | 39773 | 39223 | ID=Msa1437000-mRNA-1:cds;Parent=Msa1437000-mRNA-1 |
| tig0028065 | three_prime_UTR | 38997 | 39222 | 38997 | ID=Msa1437000-mRNA-1:three_prime_utr;Parent=Msa1437000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
