Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437010 | XP_013467909.2 | 96.512 | 86 | 3 | 0 | 1 | 86 | 38 | 123 | 3.64e-52 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437010 | A0A072VK17 | 95.349 | 86 | 4 | 0 | 1 | 86 | 38 | 123 | 8.62e-52 | 173 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1437010 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437010 | MtrunA17_Chr3g0082121 | 78.161 | 87 | 19 | 0 | 1 | 87 | 47 | 133 | 1.91e-39 | 144 |
| Msa1437010 | MtrunA17_Chr3g0082121 | 72.973 | 74 | 20 | 0 | 87 | 160 | 445 | 518 | 1.83e-21 | 92.8 |
| Msa1437010 | MtrunA17_Chr3g0082121 | 52.500 | 80 | 34 | 2 | 154 | 229 | 614 | 693 | 1.26e-16 | 78.6 |
| Msa1437010 | MtrunA17_Chr5g0401121 | 71.264 | 87 | 25 | 0 | 1 | 87 | 60 | 146 | 4.98e-36 | 125 |
| Msa1437010 | MtrunA17_Chr6g0458391 | 46.753 | 77 | 41 | 0 | 1 | 77 | 229 | 305 | 1.57e-19 | 87.0 |
| Msa1437010 | MtrunA17_Chr6g0458391 | 48.052 | 77 | 39 | 1 | 1 | 77 | 95 | 170 | 2.06e-14 | 72.0 |
| Msa1437010 | MtrunA17_Chr1g0203721 | 35.772 | 123 | 66 | 3 | 3 | 125 | 69 | 178 | 3.18e-17 | 80.5 |
| Msa1437010 | MtrunA17_Chr4g0033611 | 38.889 | 108 | 61 | 3 | 2 | 108 | 81 | 184 | 5.40e-13 | 66.6 |
| Msa1437010 | MtrunA17_Chr2g0329421 | 43.421 | 76 | 42 | 1 | 2 | 77 | 32 | 106 | 1.94e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437010 | AT3G59470.3 | 41.176 | 85 | 48 | 2 | 2 | 86 | 75 | 157 | 1.37e-12 | 65.9 |
| Msa1437010 | AT3G59470.1 | 41.176 | 85 | 48 | 2 | 2 | 86 | 75 | 157 | 1.37e-12 | 65.9 |
| Msa1437010 | AT3G59470.2 | 41.176 | 85 | 48 | 2 | 2 | 86 | 87 | 169 | 1.85e-12 | 65.5 |
Find 30 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCAAGATACTTGCATAAA+AGG | 0.217633 | tig0028083:-2466 | Msa1437010:CDS |
| TTCATCATTCGCAATTGATA+TGG | 0.254192 | tig0028083:+1993 | Msa1437010:intergenic |
| TTTGAAGTCAGATATAAATT+TGG | 0.265489 | tig0028083:-2671 | Msa1437010:intron |
| ACGCGCTGTGCATCCTGTTC+TGG | 0.282615 | tig0028083:+3687 | Msa1437010:intergenic |
| TTTGGTATTCGTCGAGAATA+TGG | 0.287007 | tig0028083:-3823 | Msa1437010:CDS |
| AATGATTATAGTAAAAGAAT+TGG | 0.319753 | tig0028083:-3847 | Msa1437010:CDS |
| TATAGTAAAAGAATTGGATT+TGG | 0.342872 | tig0028083:-3841 | Msa1437010:CDS |
| GGAAATAAAAGCAGAATAGA+TGG | 0.381196 | tig0028083:-3802 | Msa1437010:CDS |
| GTTGGACTCTTCATAAACTT+TGG | 0.396971 | tig0028083:+2083 | Msa1437010:intergenic |
| TCGAAAGATAGGGAAATATA+AGG | 0.398025 | tig0028083:-3647 | Msa1437010:intron |
| ATTTGGAGTGTAAACATTTG+CGG | 0.445050 | tig0028083:+2522 | Msa1437010:intergenic |
| AAAGGGATGTCAATGCTAAA+CGG | 0.487954 | tig0028083:-2627 | Msa1437010:CDS |
| AACAGGATGCACAGCGCGTA+TGG | 0.489143 | tig0028083:-3683 | Msa1437010:CDS |
| GGCAAAATGCATAAAGATGA+AGG | 0.490221 | tig0028083:-1941 | Msa1437010:CDS |
| GCATAAAAGGAGGTGAAAGA+AGG | 0.500971 | tig0028083:-2453 | Msa1437010:intron |
| GCCTAAATTGAAAATGAAGA+AGG | 0.516431 | tig0028083:-2563 | Msa1437010:CDS |
| GCAGTTTGAATCCGAGGCAG+TGG | 0.528643 | tig0028083:-3884 | Msa1437010:CDS |
| TCTAAAGCAGAAACCAGAAC+AGG | 0.540723 | tig0028083:-3700 | Msa1437010:CDS |
| CAACATAGACACCGTTGGCA+AGG | 0.578457 | tig0028083:-1962 | Msa1437010:CDS |
| GGATGGAGAATCAAGTGGAA+TGG | 0.591122 | tig0028083:-2025 | Msa1437010:CDS |
| AAATTCATATGCCACTGCCT+CGG | 0.591670 | tig0028083:+3873 | None:intergenic |
| GGGAATGCAGTTTGAATCCG+AGG | 0.592957 | tig0028083:-3890 | None:intergenic |
| TCTGCTTTAGACTCCGCCGT+CGG | 0.605472 | tig0028083:+3712 | Msa1437010:intergenic |
| CAAGATACTTGCATAAAAGG+AGG | 0.623387 | tig0028083:-2463 | Msa1437010:CDS |
| AAGATTCACATGCTTCAAAG+AGG | 0.641966 | tig0028083:-3764 | Msa1437010:CDS |
| GACAACAACATAGACACCGT+TGG | 0.650357 | tig0028083:-1967 | Msa1437010:CDS |
| AGATTCACATGCTTCAAAGA+GGG | 0.653445 | tig0028083:-3763 | Msa1437010:CDS |
| TGACAAAAGACGTCAACCGA+CGG | 0.667263 | tig0028083:-3728 | Msa1437010:CDS |
| TATCTGGATGGAGAATCAAG+TGG | 0.685001 | tig0028083:-2030 | Msa1437010:CDS |
| CAAAAGACGTCAACCGACGG+CGG | 0.706901 | tig0028083:-3725 | Msa1437010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGATTATAGTAAAAGAAT+TGG | - | tig0028083:1966-1985 | Msa1437010:CDS | 15.0% |
| !!! | ATTCTTTTATGATTTTCAAA+TGG | - | tig0028083:2491-2510 | Msa1437010:CDS | 15.0% |
| !!! | AGCTAATAACAAATATATTT+TGG | - | tig0028083:2523-2542 | Msa1437010:CDS | 15.0% |
| !!! | GCTAATAACAAATATATTTT+GGG | - | tig0028083:2524-2543 | Msa1437010:CDS | 15.0% |
| !!! | TTTTTAAATTGAAGGAAAAA+TGG | - | tig0028083:3033-3052 | Msa1437010:intron | 15.0% |
| !!! | TTTTAAATTGAAGGAAAAAT+GGG | - | tig0028083:3034-3053 | Msa1437010:intron | 15.0% |
| !!! | AATTTTTTACTCACTTTAAA+AGG | - | tig0028083:3168-3187 | Msa1437010:intron | 15.0% |
| !!! | ATTTTTTACTCACTTTAAAA+GGG | - | tig0028083:3169-3188 | Msa1437010:intron | 15.0% |
| !! | AATGATTATAGTAAAAGAAT+TGG | - | tig0028083:1966-1985 | Msa1437010:CDS | 15.0% |
| !!! | ATTCTTTTATGATTTTCAAA+TGG | - | tig0028083:2491-2510 | Msa1437010:CDS | 15.0% |
| !!! | AGCTAATAACAAATATATTT+TGG | - | tig0028083:2523-2542 | Msa1437010:CDS | 15.0% |
| !!! | GCTAATAACAAATATATTTT+GGG | - | tig0028083:2524-2543 | Msa1437010:CDS | 15.0% |
| !!! | TTTTTAAATTGAAGGAAAAA+TGG | - | tig0028083:3033-3052 | Msa1437010:intron | 15.0% |
| !!! | TTTTAAATTGAAGGAAAAAT+GGG | - | tig0028083:3034-3053 | Msa1437010:intron | 15.0% |
| !!! | AATTTTTTACTCACTTTAAA+AGG | - | tig0028083:3168-3187 | Msa1437010:intron | 15.0% |
| !!! | ATTTTTTACTCACTTTAAAA+GGG | - | tig0028083:3169-3188 | Msa1437010:intron | 15.0% |
| !! | TATAGTAAAAGAATTGGATT+TGG | - | tig0028083:1972-1991 | Msa1437010:CDS | 20.0% |
| !! | TGAAAATCATAAAAGAATGA+TGG | + | tig0028083:2489-2508 | Msa1437010:intergenic | 20.0% |
| !!! | AATAACAAATATATTTTGGG+CGG | - | tig0028083:2527-2546 | Msa1437010:CDS | 20.0% |
| !! | ATTAATGATTATGGATACTT+TGG | - | tig0028083:2561-2580 | Msa1437010:CDS | 20.0% |
| !!! | AAAGTGAATTTTTGAATGAA+TGG | - | tig0028083:2958-2977 | Msa1437010:intron | 20.0% |
| !!! | GCATTCAATTTTTAAATTGA+AGG | - | tig0028083:3025-3044 | Msa1437010:intron | 20.0% |
| !! | AATTTATATCTGACTTCAAA+TGG | + | tig0028083:3142-3161 | Msa1437010:intergenic | 20.0% |
| !!! | TTTGAAGTCAGATATAAATT+TGG | - | tig0028083:3142-3161 | Msa1437010:intron | 20.0% |
| !! | TGAAATTCCTCAAAAAAATT+TGG | + | tig0028083:3311-3330 | Msa1437010:intergenic | 20.0% |
| !!! | CATATCATTAACTATTTTGT+TGG | + | tig0028083:3751-3770 | Msa1437010:intergenic | 20.0% |
| !! | TATAGTAAAAGAATTGGATT+TGG | - | tig0028083:1972-1991 | Msa1437010:CDS | 20.0% |
| !! | TGAAAATCATAAAAGAATGA+TGG | + | tig0028083:2489-2508 | Msa1437010:intergenic | 20.0% |
| !!! | AATAACAAATATATTTTGGG+CGG | - | tig0028083:2527-2546 | Msa1437010:CDS | 20.0% |
| !! | ATTAATGATTATGGATACTT+TGG | - | tig0028083:2561-2580 | Msa1437010:CDS | 20.0% |
| !!! | AAAGTGAATTTTTGAATGAA+TGG | - | tig0028083:2958-2977 | Msa1437010:intron | 20.0% |
| !!! | GCATTCAATTTTTAAATTGA+AGG | - | tig0028083:3025-3044 | Msa1437010:intron | 20.0% |
| !! | AATTTATATCTGACTTCAAA+TGG | + | tig0028083:3142-3161 | Msa1437010:intergenic | 20.0% |
| !!! | TTTGAAGTCAGATATAAATT+TGG | - | tig0028083:3142-3161 | Msa1437010:intron | 20.0% |
| !! | TGAAATTCCTCAAAAAAATT+TGG | + | tig0028083:3311-3330 | Msa1437010:intergenic | 20.0% |
| !!! | CATATCATTAACTATTTTGT+TGG | + | tig0028083:3751-3770 | Msa1437010:intergenic | 20.0% |
| !! | ATTTTACTTGATCGAAAGAT+AGG | - | tig0028083:2155-2174 | Msa1437010:intron | 25.0% |
| !! | TTTTACTTGATCGAAAGATA+GGG | - | tig0028083:2156-2175 | Msa1437010:intron | 25.0% |
| ! | ATATATTGATGCAATTCTCT+TGG | + | tig0028083:2324-2343 | Msa1437010:intergenic | 25.0% |
| !!! | TGGTTTTAAGCAAATTCTTA+AGG | + | tig0028083:2395-2414 | Msa1437010:intergenic | 25.0% |
| !! | AGAATTTGCTTAAAACCAAA+AGG | - | tig0028083:2397-2416 | Msa1437010:intron | 25.0% |
| !! | TTGTTTGAAATATGTCATCA+AGG | + | tig0028083:2454-2473 | Msa1437010:intergenic | 25.0% |
| !!! | ATAATGTTTTGAAAGATTCG+TGG | - | tig0028083:3000-3019 | Msa1437010:intron | 25.0% |
| ! | TTATGTTCGAAAAACATTCA+CGG | - | tig0028083:3064-3083 | Msa1437010:intron | 25.0% |
| !!! | TTACACTCCAAATTTTTTTG+AGG | - | tig0028083:3301-3320 | Msa1437010:intron | 25.0% |
| !!! | TTTTTTTGAGGAATTTCAAG+AGG | - | tig0028083:3313-3332 | Msa1437010:intron | 25.0% |
| ! | TATCAAGATACTTGCATAAA+AGG | - | tig0028083:3347-3366 | Msa1437010:intron | 25.0% |
| !! | CACAAATTATGATAATGCAA+AGG | - | tig0028083:3395-3414 | Msa1437010:intron | 25.0% |
| ! | TATGTTGTCCAAAAAATATC+TGG | - | tig0028083:3767-3786 | Msa1437010:CDS | 25.0% |
| !! | ATTTTACTTGATCGAAAGAT+AGG | - | tig0028083:2155-2174 | Msa1437010:intron | 25.0% |
| !! | TTTTACTTGATCGAAAGATA+GGG | - | tig0028083:2156-2175 | Msa1437010:intron | 25.0% |
| ! | ATATATTGATGCAATTCTCT+TGG | + | tig0028083:2324-2343 | Msa1437010:intergenic | 25.0% |
| !!! | TGGTTTTAAGCAAATTCTTA+AGG | + | tig0028083:2395-2414 | Msa1437010:intergenic | 25.0% |
| !! | AGAATTTGCTTAAAACCAAA+AGG | - | tig0028083:2397-2416 | Msa1437010:intron | 25.0% |
| !! | TTGTTTGAAATATGTCATCA+AGG | + | tig0028083:2454-2473 | Msa1437010:intergenic | 25.0% |
| !!! | ATAATGTTTTGAAAGATTCG+TGG | - | tig0028083:3000-3019 | Msa1437010:intron | 25.0% |
| ! | TTATGTTCGAAAAACATTCA+CGG | - | tig0028083:3064-3083 | Msa1437010:intron | 25.0% |
| !!! | TTACACTCCAAATTTTTTTG+AGG | - | tig0028083:3301-3320 | Msa1437010:intron | 25.0% |
| !!! | TTTTTTTGAGGAATTTCAAG+AGG | - | tig0028083:3313-3332 | Msa1437010:intron | 25.0% |
| ! | TATCAAGATACTTGCATAAA+AGG | - | tig0028083:3347-3366 | Msa1437010:intron | 25.0% |
| !! | CACAAATTATGATAATGCAA+AGG | - | tig0028083:3395-3414 | Msa1437010:intron | 25.0% |
| ! | TATGTTGTCCAAAAAATATC+TGG | - | tig0028083:3767-3786 | Msa1437010:CDS | 25.0% |
| GGAAATAAAAGCAGAATAGA+TGG | - | tig0028083:2011-2030 | Msa1437010:CDS | 30.0% | |
| TCGAAAGATAGGGAAATATA+AGG | - | tig0028083:2166-2185 | Msa1437010:intron | 30.0% | |
| AGAATCATATGAACATACTC+AGG | + | tig0028083:2233-2252 | Msa1437010:intergenic | 30.0% | |
| TAAGCAAATTCTTAAGGTCT+TGG | + | tig0028083:2389-2408 | Msa1437010:intergenic | 30.0% | |
| GCACAGATGATTAATGATTA+TGG | - | tig0028083:2552-2571 | Msa1437010:CDS | 30.0% | |
| ! | ATCCTTATTTGTCTTGTAAG+TGG | + | tig0028083:2607-2626 | Msa1437010:intergenic | 30.0% |
| AAATAAGGATTATCGACCTT+TGG | - | tig0028083:2617-2636 | Msa1437010:CDS | 30.0% | |
| AATAAGGATTATCGACCTTT+GGG | - | tig0028083:2618-2637 | Msa1437010:CDS | 30.0% | |
| TTGTTGGACTTAATAATCAC+AGG | - | tig0028083:2646-2665 | Msa1437010:CDS | 30.0% | |
| ! | AAACAATTCGTTCTTTTCAG+TGG | - | tig0028083:2706-2725 | Msa1437010:intron | 30.0% |
| !! | TGAAACTTTTCTGAAAGAAG+TGG | - | tig0028083:2734-2753 | Msa1437010:intron | 30.0% |
| !! | GAAACTTTTCTGAAAGAAGT+GGG | - | tig0028083:2735-2754 | Msa1437010:intron | 30.0% |
| ! | TGATCTGTTAGAATGGTTTT+AGG | + | tig0028083:2771-2790 | Msa1437010:intergenic | 30.0% |
| GTTATGCCAAAAACATTTCA+TGG | - | tig0028083:2822-2841 | Msa1437010:intron | 30.0% | |
| ! | CACAATCCATGAAATGTTTT+TGG | + | tig0028083:2831-2850 | Msa1437010:intergenic | 30.0% |
| ATATAAGACAGAATGCTCTT+AGG | - | tig0028083:2859-2878 | Msa1437010:intron | 30.0% | |
| GCCTAAATTGAAAATGAAGA+AGG | - | tig0028083:3250-3269 | Msa1437010:intron | 30.0% | |
| ! | GCCTTCTTCATTTTCAATTT+AGG | + | tig0028083:3254-3273 | Msa1437010:intergenic | 30.0% |
| ! | ATTTGGAGTGTAAACATTTG+CGG | + | tig0028083:3294-3313 | Msa1437010:intergenic | 30.0% |
| ! | CAAGAAACTTTTTGTTCCAT+AGG | + | tig0028083:3441-3460 | Msa1437010:intergenic | 30.0% |
| !! | TCGTTTTAGTATGTAGTGTT+CGG | + | tig0028083:3547-3566 | Msa1437010:intergenic | 30.0% |
| AACACTACATACTAAAACGA+TGG | - | tig0028083:3547-3566 | Msa1437010:intron | 30.0% | |
| TTGTCCAAAAAATATCTGGA+TGG | - | tig0028083:3771-3790 | Msa1437010:CDS | 30.0% | |
| !!! | TTCTCCATCCAGATATTTTT+TGG | + | tig0028083:3778-3797 | Msa1437010:intergenic | 30.0% |
| TTCATCATTCGCAATTGATA+TGG | + | tig0028083:3823-3842 | Msa1437010:intergenic | 30.0% | |
| GGAAATAAAAGCAGAATAGA+TGG | - | tig0028083:2011-2030 | Msa1437010:CDS | 30.0% | |
| TCGAAAGATAGGGAAATATA+AGG | - | tig0028083:2166-2185 | Msa1437010:intron | 30.0% | |
| AGAATCATATGAACATACTC+AGG | + | tig0028083:2233-2252 | Msa1437010:intergenic | 30.0% | |
| TAAGCAAATTCTTAAGGTCT+TGG | + | tig0028083:2389-2408 | Msa1437010:intergenic | 30.0% | |
| GCACAGATGATTAATGATTA+TGG | - | tig0028083:2552-2571 | Msa1437010:CDS | 30.0% | |
| ! | ATCCTTATTTGTCTTGTAAG+TGG | + | tig0028083:2607-2626 | Msa1437010:intergenic | 30.0% |
| AAATAAGGATTATCGACCTT+TGG | - | tig0028083:2617-2636 | Msa1437010:CDS | 30.0% | |
| AATAAGGATTATCGACCTTT+GGG | - | tig0028083:2618-2637 | Msa1437010:CDS | 30.0% | |
| TTGTTGGACTTAATAATCAC+AGG | - | tig0028083:2646-2665 | Msa1437010:CDS | 30.0% | |
| ! | AAACAATTCGTTCTTTTCAG+TGG | - | tig0028083:2706-2725 | Msa1437010:intron | 30.0% |
| !! | TGAAACTTTTCTGAAAGAAG+TGG | - | tig0028083:2734-2753 | Msa1437010:intron | 30.0% |
| !! | GAAACTTTTCTGAAAGAAGT+GGG | - | tig0028083:2735-2754 | Msa1437010:intron | 30.0% |
| ! | TGATCTGTTAGAATGGTTTT+AGG | + | tig0028083:2771-2790 | Msa1437010:intergenic | 30.0% |
| GTTATGCCAAAAACATTTCA+TGG | - | tig0028083:2822-2841 | Msa1437010:intron | 30.0% | |
| ! | CACAATCCATGAAATGTTTT+TGG | + | tig0028083:2831-2850 | Msa1437010:intergenic | 30.0% |
| ATATAAGACAGAATGCTCTT+AGG | - | tig0028083:2859-2878 | Msa1437010:intron | 30.0% | |
| GCCTAAATTGAAAATGAAGA+AGG | - | tig0028083:3250-3269 | Msa1437010:intron | 30.0% | |
| ! | GCCTTCTTCATTTTCAATTT+AGG | + | tig0028083:3254-3273 | Msa1437010:intergenic | 30.0% |
| ! | ATTTGGAGTGTAAACATTTG+CGG | + | tig0028083:3294-3313 | Msa1437010:intergenic | 30.0% |
| ! | CAAGAAACTTTTTGTTCCAT+AGG | + | tig0028083:3441-3460 | Msa1437010:intergenic | 30.0% |
| !! | TCGTTTTAGTATGTAGTGTT+CGG | + | tig0028083:3547-3566 | Msa1437010:intergenic | 30.0% |
| AACACTACATACTAAAACGA+TGG | - | tig0028083:3547-3566 | Msa1437010:intron | 30.0% | |
| TTGTCCAAAAAATATCTGGA+TGG | - | tig0028083:3771-3790 | Msa1437010:CDS | 30.0% | |
| !!! | TTCTCCATCCAGATATTTTT+TGG | + | tig0028083:3778-3797 | Msa1437010:intergenic | 30.0% |
| TTCATCATTCGCAATTGATA+TGG | + | tig0028083:3823-3842 | Msa1437010:intergenic | 30.0% | |
| TTTGGTATTCGTCGAGAATA+TGG | - | tig0028083:1990-2009 | Msa1437010:CDS | 35.0% | |
| AAGATTCACATGCTTCAAAG+AGG | - | tig0028083:2049-2068 | Msa1437010:CDS | 35.0% | |
| AGATTCACATGCTTCAAAGA+GGG | - | tig0028083:2050-2069 | Msa1437010:CDS | 35.0% | |
| ATCATATGAACATACTCAGG+TGG | + | tig0028083:2230-2249 | Msa1437010:intergenic | 35.0% | |
| ! | TCCTATCGACACATATTTTG+AGG | - | tig0028083:2254-2273 | Msa1437010:intron | 35.0% |
| ACAAGCATCACAAATTGTCT+TGG | - | tig0028083:2278-2297 | Msa1437010:intron | 35.0% | |
| CAAGCATCACAAATTGTCTT+GGG | - | tig0028083:2279-2298 | Msa1437010:intron | 35.0% | |
| CAATATATATCCAAGCAAGC+TGG | - | tig0028083:2336-2355 | Msa1437010:intron | 35.0% | |
| ! | CTTTAGTGATTGCTTCCTTT+TGG | + | tig0028083:2415-2434 | Msa1437010:intergenic | 35.0% |
| AGGAAGCAATCACTAAAGTA+CGG | - | tig0028083:2417-2436 | Msa1437010:intron | 35.0% | |
| CACCACTTACAAGACAAATA+AGG | - | tig0028083:2602-2621 | Msa1437010:CDS | 35.0% | |
| TGCATCTTGATCTGTTAGAA+TGG | + | tig0028083:2778-2797 | Msa1437010:intergenic | 35.0% | |
| ! | GCGAACTCTTTTGATATAGA+TGG | + | tig0028083:2893-2912 | Msa1437010:intergenic | 35.0% |
| TGCATGCTTCAAAATCCAAA+TGG | + | tig0028083:2920-2939 | Msa1437010:intergenic | 35.0% | |
| ATTGAAGGAAAAATGGGCAT+AGG | - | tig0028083:3040-3059 | Msa1437010:intron | 35.0% | |
| AAAGGGATGTCAATGCTAAA+CGG | - | tig0028083:3186-3205 | Msa1437010:intron | 35.0% | |
| CAAGATACTTGCATAAAAGG+AGG | - | tig0028083:3350-3369 | Msa1437010:intron | 35.0% | |
| ! | TGATAATGCAAAGGAGAAGA+TGG | - | tig0028083:3404-3423 | Msa1437010:intron | 35.0% |
| ! | TGTCGTAAATTTGAGACACA+TGG | - | tig0028083:3465-3484 | Msa1437010:intron | 35.0% |
| !! | CGTTTTAGTATGTAGTGTTC+GGG | + | tig0028083:3546-3565 | Msa1437010:intergenic | 35.0% |
| TTGGTCAATTTAAGCAACTG+AGG | + | tig0028083:3672-3691 | Msa1437010:intergenic | 35.0% | |
| !! | ATGAGATTCTGAAGCTCTAT+TGG | + | tig0028083:3691-3710 | Msa1437010:intergenic | 35.0% |
| GTTGGACTCTTCATAAACTT+TGG | + | tig0028083:3733-3752 | Msa1437010:intergenic | 35.0% | |
| GGCAAAATGCATAAAGATGA+AGG | - | tig0028083:3872-3891 | Msa1437010:CDS | 35.0% | |
| TTTGGTATTCGTCGAGAATA+TGG | - | tig0028083:1990-2009 | Msa1437010:CDS | 35.0% | |
| AAGATTCACATGCTTCAAAG+AGG | - | tig0028083:2049-2068 | Msa1437010:CDS | 35.0% | |
| AGATTCACATGCTTCAAAGA+GGG | - | tig0028083:2050-2069 | Msa1437010:CDS | 35.0% | |
| ATCATATGAACATACTCAGG+TGG | + | tig0028083:2230-2249 | Msa1437010:intergenic | 35.0% | |
| ! | TCCTATCGACACATATTTTG+AGG | - | tig0028083:2254-2273 | Msa1437010:intron | 35.0% |
| ACAAGCATCACAAATTGTCT+TGG | - | tig0028083:2278-2297 | Msa1437010:intron | 35.0% | |
| CAAGCATCACAAATTGTCTT+GGG | - | tig0028083:2279-2298 | Msa1437010:intron | 35.0% | |
| CAATATATATCCAAGCAAGC+TGG | - | tig0028083:2336-2355 | Msa1437010:intron | 35.0% | |
| ! | CTTTAGTGATTGCTTCCTTT+TGG | + | tig0028083:2415-2434 | Msa1437010:intergenic | 35.0% |
| AGGAAGCAATCACTAAAGTA+CGG | - | tig0028083:2417-2436 | Msa1437010:intron | 35.0% | |
| CACCACTTACAAGACAAATA+AGG | - | tig0028083:2602-2621 | Msa1437010:CDS | 35.0% | |
| TGCATCTTGATCTGTTAGAA+TGG | + | tig0028083:2778-2797 | Msa1437010:intergenic | 35.0% | |
| ! | GCGAACTCTTTTGATATAGA+TGG | + | tig0028083:2893-2912 | Msa1437010:intergenic | 35.0% |
| TGCATGCTTCAAAATCCAAA+TGG | + | tig0028083:2920-2939 | Msa1437010:intergenic | 35.0% | |
| ATTGAAGGAAAAATGGGCAT+AGG | - | tig0028083:3040-3059 | Msa1437010:intron | 35.0% | |
| AAAGGGATGTCAATGCTAAA+CGG | - | tig0028083:3186-3205 | Msa1437010:intron | 35.0% | |
| CAAGATACTTGCATAAAAGG+AGG | - | tig0028083:3350-3369 | Msa1437010:intron | 35.0% | |
| ! | TGATAATGCAAAGGAGAAGA+TGG | - | tig0028083:3404-3423 | Msa1437010:intron | 35.0% |
| ! | TGTCGTAAATTTGAGACACA+TGG | - | tig0028083:3465-3484 | Msa1437010:intron | 35.0% |
| !! | CGTTTTAGTATGTAGTGTTC+GGG | + | tig0028083:3546-3565 | Msa1437010:intergenic | 35.0% |
| TTGGTCAATTTAAGCAACTG+AGG | + | tig0028083:3672-3691 | Msa1437010:intergenic | 35.0% | |
| !! | ATGAGATTCTGAAGCTCTAT+TGG | + | tig0028083:3691-3710 | Msa1437010:intergenic | 35.0% |
| GTTGGACTCTTCATAAACTT+TGG | + | tig0028083:3733-3752 | Msa1437010:intergenic | 35.0% | |
| GGCAAAATGCATAAAGATGA+AGG | - | tig0028083:3872-3891 | Msa1437010:CDS | 35.0% | |
| AAATTCATATGCCACTGCCT+CGG | + | tig0028083:1943-1962 | Msa1437010:intergenic | 40.0% | |
| ! | TCTAAAGCAGAAACCAGAAC+AGG | - | tig0028083:2113-2132 | Msa1437010:CDS | 40.0% |
| ! | GCCTCAAAATATGTGTCGAT+AGG | + | tig0028083:2258-2277 | Msa1437010:intergenic | 40.0% |
| ATTGTCTTGGGAGATGAATC+TGG | - | tig0028083:2291-2310 | Msa1437010:intron | 40.0% | |
| TATATATCCAAGCAAGCTGG+TGG | - | tig0028083:2339-2358 | Msa1437010:intron | 40.0% | |
| ATATATCCAAGCAAGCTGGT+GGG | - | tig0028083:2340-2359 | Msa1437010:intron | 40.0% | |
| ATCACTAAAGTACGGTGAAG+TGG | - | tig0028083:2425-2444 | Msa1437010:intron | 40.0% | |
| TCACTAAAGTACGGTGAAGT+GGG | - | tig0028083:2426-2445 | Msa1437010:intron | 40.0% | |
| AGTCCAACAAATACACCCAA+AGG | + | tig0028083:2636-2655 | Msa1437010:intergenic | 40.0% | |
| !!! | ACAGGCAAACCGTCATTTTT+GGG | - | tig0028083:2664-2683 | Msa1437010:CDS | 40.0% |
| CAATGTTGCCCCAAAAATGA+CGG | + | tig0028083:2676-2695 | Msa1437010:intergenic | 40.0% | |
| !! | ACTTTTCTGAAAGAAGTGGG+TGG | - | tig0028083:2738-2757 | Msa1437010:intron | 40.0% |
| AACAGATCAAGATGCAGCAA+TGG | - | tig0028083:2782-2801 | Msa1437010:intron | 40.0% | |
| ! | CATTTCATGGATTGTGCACT+TGG | - | tig0028083:2835-2854 | Msa1437010:intron | 40.0% |
| AAAGAGTTCGCGATTCCATT+TGG | - | tig0028083:2902-2921 | Msa1437010:intron | 40.0% | |
| AGCATGCATAGATCTAGATG+AGG | - | tig0028083:2932-2951 | Msa1437010:intron | 40.0% | |
| ATGCATAGATCTAGATGAGG+AGG | - | tig0028083:2935-2954 | Msa1437010:intron | 40.0% | |
| GCATAAAAGGAGGTGAAAGA+AGG | - | tig0028083:3360-3379 | Msa1437010:intron | 40.0% | |
| TGCAAAGGAGAAGATGGTAA+TGG | - | tig0028083:3410-3429 | Msa1437010:intron | 40.0% | |
| GCAAAGGAGAAGATGGTAAT+GGG | - | tig0028083:3411-3430 | Msa1437010:intron | 40.0% | |
| !! | GATGGTAATGGGAAATCCTA+TGG | - | tig0028083:3422-3441 | Msa1437010:intron | 40.0% |
| GAAGTAATCAAGGTTGGAGT+GGG | - | tig0028083:3589-3608 | Msa1437010:intron | 40.0% | |
| AAAAAGCCCATTTCACGAAG+CGG | - | tig0028083:3631-3650 | Msa1437010:intron | 40.0% | |
| ATTGTACCGCTTCGTGAAAT+GGG | + | tig0028083:3640-3659 | Msa1437010:intergenic | 40.0% | |
| TATCTGGATGGAGAATCAAG+TGG | - | tig0028083:3783-3802 | Msa1437010:CDS | 40.0% | |
| ! | TATGCATTTTGCCTTGCCAA+CGG | + | tig0028083:3865-3884 | Msa1437010:intergenic | 40.0% |
| AAATTCATATGCCACTGCCT+CGG | + | tig0028083:1943-1962 | Msa1437010:intergenic | 40.0% | |
| ! | TCTAAAGCAGAAACCAGAAC+AGG | - | tig0028083:2113-2132 | Msa1437010:CDS | 40.0% |
| ! | GCCTCAAAATATGTGTCGAT+AGG | + | tig0028083:2258-2277 | Msa1437010:intergenic | 40.0% |
| ATTGTCTTGGGAGATGAATC+TGG | - | tig0028083:2291-2310 | Msa1437010:intron | 40.0% | |
| TATATATCCAAGCAAGCTGG+TGG | - | tig0028083:2339-2358 | Msa1437010:intron | 40.0% | |
| ATATATCCAAGCAAGCTGGT+GGG | - | tig0028083:2340-2359 | Msa1437010:intron | 40.0% | |
| ATCACTAAAGTACGGTGAAG+TGG | - | tig0028083:2425-2444 | Msa1437010:intron | 40.0% | |
| TCACTAAAGTACGGTGAAGT+GGG | - | tig0028083:2426-2445 | Msa1437010:intron | 40.0% | |
| AGTCCAACAAATACACCCAA+AGG | + | tig0028083:2636-2655 | Msa1437010:intergenic | 40.0% | |
| !!! | ACAGGCAAACCGTCATTTTT+GGG | - | tig0028083:2664-2683 | Msa1437010:CDS | 40.0% |
| CAATGTTGCCCCAAAAATGA+CGG | + | tig0028083:2676-2695 | Msa1437010:intergenic | 40.0% | |
| !! | ACTTTTCTGAAAGAAGTGGG+TGG | - | tig0028083:2738-2757 | Msa1437010:intron | 40.0% |
| AACAGATCAAGATGCAGCAA+TGG | - | tig0028083:2782-2801 | Msa1437010:intron | 40.0% | |
| ! | CATTTCATGGATTGTGCACT+TGG | - | tig0028083:2835-2854 | Msa1437010:intron | 40.0% |
| AAAGAGTTCGCGATTCCATT+TGG | - | tig0028083:2902-2921 | Msa1437010:intron | 40.0% | |
| AGCATGCATAGATCTAGATG+AGG | - | tig0028083:2932-2951 | Msa1437010:intron | 40.0% | |
| ATGCATAGATCTAGATGAGG+AGG | - | tig0028083:2935-2954 | Msa1437010:intron | 40.0% | |
| GCATAAAAGGAGGTGAAAGA+AGG | - | tig0028083:3360-3379 | Msa1437010:intron | 40.0% | |
| TGCAAAGGAGAAGATGGTAA+TGG | - | tig0028083:3410-3429 | Msa1437010:intron | 40.0% | |
| GCAAAGGAGAAGATGGTAAT+GGG | - | tig0028083:3411-3430 | Msa1437010:intron | 40.0% | |
| !! | GATGGTAATGGGAAATCCTA+TGG | - | tig0028083:3422-3441 | Msa1437010:intron | 40.0% |
| GAAGTAATCAAGGTTGGAGT+GGG | - | tig0028083:3589-3608 | Msa1437010:intron | 40.0% | |
| AAAAAGCCCATTTCACGAAG+CGG | - | tig0028083:3631-3650 | Msa1437010:intron | 40.0% | |
| ATTGTACCGCTTCGTGAAAT+GGG | + | tig0028083:3640-3659 | Msa1437010:intergenic | 40.0% | |
| TATCTGGATGGAGAATCAAG+TGG | - | tig0028083:3783-3802 | Msa1437010:CDS | 40.0% | |
| ! | TATGCATTTTGCCTTGCCAA+CGG | + | tig0028083:3865-3884 | Msa1437010:intergenic | 40.0% |
| TGACAAAAGACGTCAACCGA+CGG | - | tig0028083:2085-2104 | Msa1437010:CDS | 45.0% | |
| AGCTCAACATAACCACCTTC+TGG | - | tig0028083:2202-2221 | Msa1437010:intron | 45.0% | |
| TATATCCAAGCAAGCTGGTG+GGG | - | tig0028083:2341-2360 | Msa1437010:intron | 45.0% | |
| CGACCTTTGGGTGTATTTGT+TGG | - | tig0028083:2630-2649 | Msa1437010:CDS | 45.0% | |
| !! | CACAGGCAAACCGTCATTTT+TGG | - | tig0028083:2663-2682 | Msa1437010:CDS | 45.0% |
| !!! | CAGGCAAACCGTCATTTTTG+GGG | - | tig0028083:2665-2684 | Msa1437010:CDS | 45.0% |
| GTTCGAAAAACATTCACGGC+AGG | - | tig0028083:3068-3087 | Msa1437010:intron | 45.0% | |
| AACGATGGACAAGAGATGCA+AGG | - | tig0028083:3562-3581 | Msa1437010:intron | 45.0% | |
| GGAAGTAATCAAGGTTGGAG+TGG | - | tig0028083:3588-3607 | Msa1437010:intron | 45.0% | |
| !! | GCTTCGTGAAATGGGCTTTT+TGG | + | tig0028083:3632-3651 | Msa1437010:intergenic | 45.0% |
| CATTGTACCGCTTCGTGAAA+TGG | + | tig0028083:3641-3660 | Msa1437010:intergenic | 45.0% | |
| GGATGGAGAATCAAGTGGAA+TGG | - | tig0028083:3788-3807 | Msa1437010:CDS | 45.0% | |
| GACAACAACATAGACACCGT+TGG | - | tig0028083:3846-3865 | Msa1437010:CDS | 45.0% | |
| TGACAAAAGACGTCAACCGA+CGG | - | tig0028083:2085-2104 | Msa1437010:CDS | 45.0% | |
| AGCTCAACATAACCACCTTC+TGG | - | tig0028083:2202-2221 | Msa1437010:intron | 45.0% | |
| TATATCCAAGCAAGCTGGTG+GGG | - | tig0028083:2341-2360 | Msa1437010:intron | 45.0% | |
| CGACCTTTGGGTGTATTTGT+TGG | - | tig0028083:2630-2649 | Msa1437010:CDS | 45.0% | |
| !! | CACAGGCAAACCGTCATTTT+TGG | - | tig0028083:2663-2682 | Msa1437010:CDS | 45.0% |
| !!! | CAGGCAAACCGTCATTTTTG+GGG | - | tig0028083:2665-2684 | Msa1437010:CDS | 45.0% |
| GTTCGAAAAACATTCACGGC+AGG | - | tig0028083:3068-3087 | Msa1437010:intron | 45.0% | |
| AACGATGGACAAGAGATGCA+AGG | - | tig0028083:3562-3581 | Msa1437010:intron | 45.0% | |
| GGAAGTAATCAAGGTTGGAG+TGG | - | tig0028083:3588-3607 | Msa1437010:intron | 45.0% | |
| !! | GCTTCGTGAAATGGGCTTTT+TGG | + | tig0028083:3632-3651 | Msa1437010:intergenic | 45.0% |
| CATTGTACCGCTTCGTGAAA+TGG | + | tig0028083:3641-3660 | Msa1437010:intergenic | 45.0% | |
| GGATGGAGAATCAAGTGGAA+TGG | - | tig0028083:3788-3807 | Msa1437010:CDS | 45.0% | |
| GACAACAACATAGACACCGT+TGG | - | tig0028083:3846-3865 | Msa1437010:CDS | 45.0% | |
| CATACTCAGGTGGAACCAGA+AGG | + | tig0028083:2220-2239 | Msa1437010:intergenic | 50.0% | |
| ATGGACAAGAGATGCAAGGC+TGG | - | tig0028083:3566-3585 | Msa1437010:intron | 50.0% | |
| TGGACAAGAGATGCAAGGCT+GGG | - | tig0028083:3567-3586 | Msa1437010:intron | 50.0% | |
| GCAAGGCTGGGAAGTAATCA+AGG | - | tig0028083:3579-3598 | Msa1437010:intron | 50.0% | |
| GGCTGGGAAGTAATCAAGGT+TGG | - | tig0028083:3583-3602 | Msa1437010:intron | 50.0% | |
| GTAATCAAGGTTGGAGTGGG+AGG | - | tig0028083:3592-3611 | Msa1437010:intron | 50.0% | |
| CAACATAGACACCGTTGGCA+AGG | - | tig0028083:3851-3870 | Msa1437010:CDS | 50.0% | |
| CATACTCAGGTGGAACCAGA+AGG | + | tig0028083:2220-2239 | Msa1437010:intergenic | 50.0% | |
| ATGGACAAGAGATGCAAGGC+TGG | - | tig0028083:3566-3585 | Msa1437010:intron | 50.0% | |
| TGGACAAGAGATGCAAGGCT+GGG | - | tig0028083:3567-3586 | Msa1437010:intron | 50.0% | |
| GCAAGGCTGGGAAGTAATCA+AGG | - | tig0028083:3579-3598 | Msa1437010:intron | 50.0% | |
| GGCTGGGAAGTAATCAAGGT+TGG | - | tig0028083:3583-3602 | Msa1437010:intron | 50.0% | |
| GTAATCAAGGTTGGAGTGGG+AGG | - | tig0028083:3592-3611 | Msa1437010:intron | 50.0% | |
| CAACATAGACACCGTTGGCA+AGG | - | tig0028083:3851-3870 | Msa1437010:CDS | 50.0% | |
| GCAGTTTGAATCCGAGGCAG+TGG | - | tig0028083:1929-1948 | Msa1437010:CDS | 55.0% | |
| CAAAAGACGTCAACCGACGG+CGG | - | tig0028083:2088-2107 | Msa1437010:CDS | 55.0% | |
| ! | TCTGCTTTAGACTCCGCCGT+CGG | + | tig0028083:2104-2123 | Msa1437010:intergenic | 55.0% |
| AACAGGATGCACAGCGCGTA+TGG | - | tig0028083:2130-2149 | Msa1437010:intron | 55.0% | |
| ACTCAGGTGGAACCAGAAGG+TGG | + | tig0028083:2217-2236 | Msa1437010:intergenic | 55.0% | |
| GCAGTTTGAATCCGAGGCAG+TGG | - | tig0028083:1929-1948 | Msa1437010:CDS | 55.0% | |
| CAAAAGACGTCAACCGACGG+CGG | - | tig0028083:2088-2107 | Msa1437010:CDS | 55.0% | |
| ! | TCTGCTTTAGACTCCGCCGT+CGG | + | tig0028083:2104-2123 | Msa1437010:intergenic | 55.0% |
| AACAGGATGCACAGCGCGTA+TGG | - | tig0028083:2130-2149 | Msa1437010:intron | 55.0% | |
| ACTCAGGTGGAACCAGAAGG+TGG | + | tig0028083:2217-2236 | Msa1437010:intergenic | 55.0% | |
| ACGCGCTGTGCATCCTGTTC+TGG | + | tig0028083:2129-2148 | Msa1437010:intergenic | 60.0% | |
| ! | CTCTACCCCACCAGCTTGCT+TGG | + | tig0028083:2349-2368 | Msa1437010:intergenic | 60.0% |
| GCTGGTGGGGTAGAGACTGT+CGG | - | tig0028083:2354-2373 | Msa1437010:intron | 60.0% | |
| ACGCGCTGTGCATCCTGTTC+TGG | + | tig0028083:2129-2148 | Msa1437010:intergenic | 60.0% | |
| ! | CTCTACCCCACCAGCTTGCT+TGG | + | tig0028083:2349-2368 | Msa1437010:intergenic | 60.0% |
| GCTGGTGGGGTAGAGACTGT+CGG | - | tig0028083:2354-2373 | Msa1437010:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028083 | gene | 1927 | 3908 | 1927 | ID=Msa1437010;Name=Msa1437010 |
| tig0028083 | mRNA | 1927 | 3908 | 1927 | ID=Msa1437010-mRNA-1;Parent=Msa1437010;Name=Msa1437010-mRNA-1;_AED=0.30;_eAED=0.37;_QI=0|0|0|1|1|1|3|0|235 |
| tig0028083 | exon | 3648 | 3908 | 3648 | ID=Msa1437010-mRNA-1:exon:10460;Parent=Msa1437010-mRNA-1 |
| tig0028083 | exon | 2454 | 2686 | 2454 | ID=Msa1437010-mRNA-1:exon:10459;Parent=Msa1437010-mRNA-1 |
| tig0028083 | exon | 1927 | 2140 | 1927 | ID=Msa1437010-mRNA-1:exon:10458;Parent=Msa1437010-mRNA-1 |
| tig0028083 | CDS | 3648 | 3908 | 3648 | ID=Msa1437010-mRNA-1:cds;Parent=Msa1437010-mRNA-1 |
| tig0028083 | CDS | 2454 | 2686 | 2454 | ID=Msa1437010-mRNA-1:cds;Parent=Msa1437010-mRNA-1 |
| tig0028083 | CDS | 1927 | 2140 | 1927 | ID=Msa1437010-mRNA-1:cds;Parent=Msa1437010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
