AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1437290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1437290 MtrunA17_Chr2g0330621 77.841 176 26 2 4 166 28 203 1.10e-92 271
Msa1437290 MtrunA17_Chr2g0330591 73.034 178 34 3 4 168 261 437 4.68e-80 257
Msa1437290 MtrunA17_Chr2g0330591 71.963 107 29 1 143 249 541 646 3.22e-43 155
Msa1437290 MtrunA17_Chr2g0330631 89.655 87 9 0 163 249 73 159 4.79e-50 164
Msa1437290 MtrunA17_Chr8g0340871 41.436 181 89 5 4 168 265 444 7.23e-31 120
Msa1437290 MtrunA17_Chr8g0340871 48.810 84 43 0 166 249 565 648 3.33e-20 89.4
Msa1437290 MtrunA17_Chr8g0341151 40.217 184 87 5 4 168 255 434 8.26e-30 117
Msa1437290 MtrunA17_Chr8g0341151 51.724 87 42 0 163 249 546 632 1.41e-22 96.3
Msa1437290 MtrunA17_Chr8g0340931 40.659 182 90 5 4 168 259 439 1.23e-28 114
Msa1437290 MtrunA17_Chr8g0340931 52.874 87 41 0 163 249 553 639 2.52e-22 95.9
Msa1437290 MtrunA17_Chr8g0341011 40.110 182 91 5 4 168 260 440 4.22e-28 112
Msa1437290 MtrunA17_Chr8g0341011 52.874 87 41 0 163 249 556 642 3.73e-23 98.2
Msa1437290 MtrunA17_Chr8g0341231 40.828 169 77 6 21 168 298 464 3.08e-27 109
Msa1437290 MtrunA17_Chr8g0347661 38.122 181 95 5 4 168 267 446 4.69e-27 109
Msa1437290 MtrunA17_Chr8g0347661 50.602 83 41 0 167 249 562 644 4.58e-21 92.0
Msa1437290 MtrunA17_Chr8g0340941 38.922 167 75 4 21 168 276 434 2.02e-26 107
Msa1437290 MtrunA17_Chr8g0340891 37.222 180 86 4 8 168 267 438 2.69e-26 107
Msa1437290 MtrunA17_Chr8g0340891 52.874 87 41 0 163 249 551 637 1.17e-23 99.8
Msa1437290 MtrunA17_Chr8g0341361 59.770 87 34 1 163 249 175 260 5.02e-26 105
Msa1437290 MtrunA17_Chr8g0340911 38.286 175 94 3 8 168 265 439 7.46e-26 105
Msa1437290 MtrunA17_Chr8g0340911 50.575 87 43 0 163 249 553 639 1.31e-21 93.6
Msa1437290 MtrunA17_Chr8g0340881 38.919 185 89 5 4 168 263 443 9.86e-26 105
Msa1437290 MtrunA17_Chr8g0340881 51.724 87 42 0 163 249 557 643 1.13e-21 94.0
Msa1437290 MtrunA17_Chr8g0341131 53.012 83 39 0 167 249 8 90 1.16e-23 93.6
Msa1437290 MtrunA17_Chr6g0487571 51.546 97 42 1 153 249 552 643 1.42e-23 99.4
Msa1437290 MtrunA17_Chr6g0487571 33.149 181 103 5 2 166 262 440 1.86e-20 90.1
Msa1437290 MtrunA17_Chr8g0341101 55.422 83 37 0 167 249 607 689 3.93e-23 98.2
Msa1437290 MtrunA17_Chr8g0341101 36.047 172 92 7 19 178 332 497 2.41e-16 78.2
Msa1437290 MtrunA17_Chr8g0341061 51.724 87 42 0 163 249 600 686 1.01e-22 96.7
Msa1437290 MtrunA17_Chr8g0341061 36.145 166 89 6 9 162 318 478 1.31e-17 82.0
Msa1437290 MtrunA17_Chr8g0341221 54.217 83 38 0 167 249 28 110 1.66e-22 91.7
Msa1437290 MtrunA17_Chr8g0341111 53.012 83 39 0 167 249 470 552 2.94e-22 95.5
Msa1437290 MtrunA17_Chr8g0341081 51.807 83 40 0 167 249 38 120 3.70e-22 93.2
Msa1437290 MtrunA17_Chr8g0358831 38.411 151 79 4 30 166 254 404 6.41e-22 94.4
Msa1437290 MtrunA17_Chr8g0358831 51.111 90 37 1 167 249 518 607 9.79e-21 90.9
Msa1437290 MtrunA17_Chr8g0340951 49.425 87 44 0 163 249 29 115 6.62e-22 90.1
Msa1437290 MtrunA17_Chr8g0341251 50.575 87 43 0 163 249 35 121 7.68e-22 92.4
Msa1437290 MtrunA17_Chr8g0340971 49.425 87 44 0 163 249 76 162 1.06e-21 90.9
Msa1437290 MtrunA17_Chr2g0330691 86.364 44 6 0 206 249 1 44 4.73e-19 82.8
Msa1437290 MtrunA17_Chr8g0341141 31.343 201 114 7 4 186 261 455 2.37e-18 84.0
Msa1437290 MtrunA17_Chr8g0341091 32.275 189 110 6 2 178 309 491 1.74e-16 78.6
Msa1437290 MtrunA17_Chr5g0423891 41.573 89 52 0 161 249 147 235 6.59e-15 73.6
Msa1437290 MtrunA17_Chr8g0365691 42.308 78 43 1 165 240 297 374 1.37e-13 69.7
Msa1437290 MtrunA17_Chr8g0373501 36.792 106 62 3 149 249 304 409 1.37e-13 70.1
Msa1437290 MtrunA17_Chr6g0455651 39.362 94 52 1 156 249 100 188 2.15e-13 68.9
Msa1437290 MtrunA17_Chr8g0376131 43.529 85 46 1 167 249 40 124 4.47e-13 68.2
Msa1437290 MtrunA17_Chr7g0237401 38.043 92 54 2 161 249 75 166 8.13e-13 67.4
Msa1437290 MtrunA17_Chr2g0318301 36.000 100 61 2 153 249 475 574 1.30e-12 67.0
Msa1437290 MtrunA17_Chr7g0263591 40.506 79 47 0 171 249 598 676 1.58e-12 67.0
Msa1437290 MtrunA17_Chr2g0319101 33.071 127 73 2 123 249 70 184 1.63e-12 66.6
Msa1437290 MtrunA17_Chr6g0485761 38.824 85 50 1 167 249 283 367 2.58e-12 66.2
Msa1437290 MtrunA17_Chr1g0181731 39.759 83 50 0 167 249 588 670 2.78e-12 66.2
Msa1437290 MtrunA17_Chr1g0160581 42.045 88 50 1 162 249 290 376 4.87e-12 65.5
Msa1437290 MtrunA17_Chr6g0487561 35.714 112 67 3 2 110 271 380 5.21e-12 65.1
Msa1437290 MtrunA17_Chr7g0219671 38.614 101 57 3 154 249 505 605 5.44e-12 65.5
Msa1437290 MtrunA17_Chr5g0403891 37.778 90 54 1 162 249 239 328 5.92e-12 65.1
Msa1437290 MtrunA17_Chr6g0485721 38.095 84 50 1 167 248 86 169 8.21e-12 64.3
Msa1437290 MtrunA17_Chr8g0352381 35.294 85 53 1 167 249 519 603 8.25e-12 64.7
Msa1437290 MtrunA17_Chr8g0341171 36.782 87 37 1 163 249 72 140 8.75e-12 61.6
Msa1437290 MtrunA17_Chr7g0219781 39.506 81 47 1 171 249 528 608 1.16e-11 64.3
Msa1437290 MtrunA17_Chr7g0219691 39.604 101 56 3 154 249 505 605 1.40e-11 63.9
Msa1437290 MtrunA17_Chr7g0219721 39.604 101 56 3 154 249 505 605 1.40e-11 63.9
Msa1437290 MtrunA17_Chr3g0123141 41.791 67 39 0 176 242 607 673 1.47e-11 63.9
Msa1437290 MtrunA17_Chr1g0160771 42.045 88 50 1 162 249 286 372 1.72e-11 63.5
Msa1437290 MtrunA17_Chr7g0219601 40.741 81 46 1 171 249 511 591 1.87e-11 63.5
Msa1437290 MtrunA17_Chr7g0219571 39.506 81 47 1 171 249 527 607 1.92e-11 63.5
Msa1437290 MtrunA17_Chr1g0160731 40.909 88 51 1 162 249 282 368 2.17e-11 63.5
Msa1437290 MtrunA17_Chr8g0341181 50.000 58 24 1 121 178 21 73 2.28e-11 59.7
Msa1437290 MtrunA17_Chr7g0219651 39.506 81 47 1 171 249 1512 1592 2.42e-11 63.5
Msa1437290 MtrunA17_Chr7g0219631 39.024 82 47 2 166 244 48 129 2.42e-11 59.7
Msa1437290 MtrunA17_Chr3g0143961 31.633 98 65 1 154 249 43 140 2.60e-11 62.8
Msa1437290 MtrunA17_Chr1g0190581 36.585 82 50 1 170 249 513 594 2.68e-11 63.2
Msa1437290 MtrunA17_Chr4g0061081 36.471 85 52 1 167 249 515 599 2.78e-11 63.2
Msa1437290 MtrunA17_Chr7g0219611 40.741 81 46 1 171 249 507 587 2.96e-11 63.2
Msa1437290 MtrunA17_Chr1g0203631 38.272 81 48 1 171 249 985 1065 3.20e-11 63.2
Msa1437290 MtrunA17_Chr1g0158771 37.500 88 54 1 162 249 274 360 3.72e-11 62.8
Msa1437290 MtrunA17_Chr1g0158181 33.333 87 57 1 163 249 312 397 3.87e-11 62.8
Msa1437290 MtrunA17_Chr1g0160921 37.255 102 59 2 153 249 23 124 5.04e-11 62.0
Msa1437290 MtrunA17_Chr5g0441021 36.000 100 51 3 163 249 53 152 5.08e-11 62.0
Msa1437290 MtrunA17_Chr2g0291501 40.230 87 49 2 157 240 616 702 5.18e-11 62.4
Msa1437290 MtrunA17_Chr3g0108351 35.294 85 53 1 167 249 608 692 5.21e-11 62.4
Msa1437290 MtrunA17_Chr1g0158341 35.556 90 57 1 160 249 12 100 5.48e-11 61.6
Msa1437290 MtrunA17_Chr3g0144481 40.789 76 43 1 167 240 77 152 5.95e-11 62.0
Msa1437290 MtrunA17_Chr1g0206211 32.990 97 63 1 155 249 4 100 5.96e-11 60.1
Msa1437290 MtrunA17_Chr3g0106121 35.000 100 59 2 150 249 493 586 6.46e-11 62.0
Msa1437290 MtrunA17_Chr4g0053591 39.474 76 44 1 176 249 145 220 6.48e-11 62.0
Msa1437290 MtrunA17_Chr4g0053561 39.474 76 44 1 176 249 438 513 7.06e-11 62.0
Msa1437290 MtrunA17_Chr5g0411631 36.250 80 51 0 170 249 589 668 7.46e-11 62.0
Msa1437290 MtrunA17_Chr8g0341271 35.135 111 67 2 4 113 191 297 7.47e-11 61.2
Msa1437290 MtrunA17_Chr8g0341351 40.625 96 53 3 21 113 291 385 7.70e-11 61.6
Msa1437290 MtrunA17_Chr3g0108361 38.824 85 50 1 167 249 610 694 9.47e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1437290 AT2G19210.1 43.353 173 83 3 5 162 264 436 9.17e-36 135
Msa1437290 AT2G19210.1 50.000 100 49 1 150 249 549 647 4.19e-23 98.2
Msa1437290 AT1G05700.1 41.358 162 78 5 21 166 276 436 8.31e-29 114
Msa1437290 AT1G05700.1 45.783 83 44 1 167 249 560 641 1.18e-16 79.3
Msa1437290 AT1G05700.2 41.358 162 78 5 21 166 276 436 9.68e-29 114
Msa1437290 AT1G05700.2 45.783 83 44 1 167 249 591 672 1.17e-16 79.7
Msa1437290 AT1G51890.5 60.920 87 33 1 163 249 284 369 1.01e-28 114
Msa1437290 AT1G51890.5 38.217 157 78 4 25 162 1 157 3.69e-20 89.7
Msa1437290 AT1G51890.4 60.920 87 33 1 163 249 492 577 1.27e-28 114
Msa1437290 AT1G51890.4 38.650 163 81 4 19 162 203 365 3.83e-22 95.5
Msa1437290 AT1G51890.3 60.920 87 33 1 163 249 556 641 1.39e-28 114
Msa1437290 AT1G51890.3 37.725 167 85 4 19 166 267 433 3.95e-22 95.5
Msa1437290 AT1G51890.2 60.920 87 33 1 163 249 556 641 1.48e-28 114
Msa1437290 AT1G51890.2 38.650 163 81 4 19 162 267 429 3.86e-22 95.5
Msa1437290 AT1G51890.1 60.920 87 33 1 163 249 556 641 1.53e-28 114
Msa1437290 AT1G51890.1 38.650 163 81 4 19 162 267 429 4.38e-22 95.5
Msa1437290 AT5G59680.1 39.881 168 75 6 21 166 274 437 7.36e-27 109
Msa1437290 AT5G59680.1 48.864 88 45 0 162 249 565 652 6.04e-17 80.5
Msa1437290 AT3G46400.1 40.659 182 88 7 4 166 258 438 9.69e-27 108
Msa1437290 AT3G46400.1 44.792 96 53 0 154 249 553 648 1.10e-20 91.3
Msa1437290 AT2G19230.1 38.411 151 77 4 21 155 280 430 1.17e-26 108
Msa1437290 AT2G19230.1 53.012 83 38 1 167 249 560 641 2.05e-20 90.5
Msa1437290 AT2G19230.2 38.411 151 77 4 21 155 280 430 1.44e-26 108
Msa1437290 AT2G19230.2 53.012 83 38 1 167 249 559 640 1.76e-20 90.9
Msa1437290 AT1G51880.3 57.732 97 38 2 153 249 570 663 1.52e-26 108
Msa1437290 AT1G51880.3 40.541 185 83 5 4 165 274 454 2.11e-26 107
Msa1437290 AT1G51880.2 57.732 97 38 2 153 249 562 655 1.63e-26 108
Msa1437290 AT1G51880.2 40.541 185 83 5 4 165 274 454 2.06e-26 107
Msa1437290 AT1G51880.1 57.732 97 38 2 153 249 544 637 1.73e-26 108
Msa1437290 AT1G51880.1 40.541 185 83 5 4 165 256 436 2.44e-26 107
Msa1437290 AT1G51860.2 62.963 81 29 1 169 249 432 511 2.12e-26 107
Msa1437290 AT1G51860.2 39.394 165 81 4 17 162 126 290 3.87e-24 101
Msa1437290 AT1G51860.1 62.963 81 29 1 169 249 576 655 2.88e-26 107
Msa1437290 AT1G51860.1 39.394 165 81 4 17 162 270 434 4.65e-24 101
Msa1437290 AT3G21340.2 55.172 87 39 0 163 249 578 664 7.22e-26 106
Msa1437290 AT3G21340.2 35.795 176 93 6 10 166 267 441 8.79e-23 97.4
Msa1437290 AT3G21340.1 55.172 87 39 0 163 249 578 664 8.10e-26 106
Msa1437290 AT3G21340.1 35.795 176 93 6 10 166 267 441 5.87e-23 97.8
Msa1437290 AT1G51870.2 57.471 87 36 1 163 249 569 654 8.64e-26 106
Msa1437290 AT1G51870.2 40.491 163 78 3 22 165 275 437 2.73e-24 101
Msa1437290 AT1G51805.1 39.766 171 69 6 22 166 268 430 9.96e-26 105
Msa1437290 AT1G51805.1 52.874 87 41 0 163 249 563 649 2.09e-24 102
Msa1437290 AT1G51805.2 39.766 171 69 6 22 166 244 406 9.98e-26 105
Msa1437290 AT1G51805.2 52.874 87 41 0 163 249 539 625 2.13e-24 102
Msa1437290 AT4G29990.1 35.294 187 98 6 1 165 250 435 1.07e-25 105
Msa1437290 AT4G29990.1 56.627 83 35 1 167 249 564 645 3.80e-23 98.6
Msa1437290 AT1G51870.1 57.471 87 36 1 163 249 517 602 1.09e-25 105
Msa1437290 AT1G51870.1 37.705 183 95 3 22 185 275 457 6.36e-25 103
Msa1437290 AT4G29990.2 35.294 187 98 6 1 165 250 435 1.34e-25 105
Msa1437290 AT4G29990.2 56.627 83 35 1 167 249 564 645 3.28e-23 98.6
Msa1437290 AT2G04300.2 54.023 87 40 0 163 249 568 654 2.59e-25 104
Msa1437290 AT2G04300.2 35.676 185 95 9 2 166 262 442 9.52e-23 97.4
Msa1437290 AT2G04300.1 54.023 87 40 0 163 249 527 613 2.61e-25 104
Msa1437290 AT2G04300.1 30.387 181 69 7 2 166 262 401 2.04e-14 72.8
Msa1437290 AT3G46370.2 39.227 181 84 8 5 166 176 349 4.58e-25 103
Msa1437290 AT3G46370.2 43.137 102 54 1 152 249 458 559 1.09e-19 88.6
Msa1437290 AT3G46370.1 39.227 181 84 8 5 166 176 349 4.58e-25 103
Msa1437290 AT3G46370.1 43.137 102 54 1 152 249 458 559 1.09e-19 88.6
Msa1437290 AT1G51830.2 52.874 87 41 0 163 249 379 465 5.06e-25 103
Msa1437290 AT1G51830.2 34.184 196 109 6 4 181 69 262 2.37e-20 90.1
Msa1437290 AT1G51830.1 52.874 87 41 0 163 249 372 458 5.33e-25 103
Msa1437290 AT1G51830.1 34.184 196 109 6 4 181 62 255 2.25e-20 90.5
Msa1437290 AT1G51810.1 35.676 185 99 5 1 166 121 304 5.86e-25 103
Msa1437290 AT1G51810.1 52.874 87 41 0 163 249 436 522 1.69e-23 99.4
Msa1437290 AT1G51800.1 37.222 180 82 5 21 178 272 442 6.11e-25 103
Msa1437290 AT1G51800.1 48.276 87 44 1 163 249 572 657 5.90e-19 86.3
Msa1437290 AT1G51820.2 51.724 87 42 0 163 249 302 388 2.34e-24 102
Msa1437290 AT1G51820.2 34.591 159 84 5 29 168 12 169 1.12e-17 82.4
Msa1437290 AT3G46420.1 38.824 170 84 6 16 166 269 437 2.71e-24 101
Msa1437290 AT3G46420.1 47.436 78 41 0 172 249 526 603 5.08e-19 86.3
Msa1437290 AT1G51820.1 51.724 87 42 0 163 249 564 650 3.00e-24 101
Msa1437290 AT1G51820.1 34.615 182 99 5 4 166 249 429 1.04e-22 97.1
Msa1437290 AT1G51850.2 51.724 87 42 0 163 249 564 650 6.06e-24 100
Msa1437290 AT1G51850.2 35.165 182 98 5 4 166 249 429 1.03e-21 94.4
Msa1437290 AT1G51850.1 51.724 87 42 0 163 249 544 630 6.38e-24 100
Msa1437290 AT1G51850.1 35.165 182 98 5 4 166 229 409 1.33e-21 94.0
Msa1437290 AT3G46340.1 36.757 185 93 7 4 166 258 440 7.93e-24 100
Msa1437290 AT3G46340.1 46.591 88 46 1 163 249 571 658 1.12e-18 85.5
Msa1437290 AT5G59616.1 39.726 146 61 5 21 146 12 150 1.53e-23 93.2
Msa1437290 AT1G49100.1 32.787 183 93 4 9 166 263 440 3.12e-23 98.6
Msa1437290 AT1G49100.1 45.977 87 47 0 163 249 567 653 1.61e-19 87.8
Msa1437290 AT1G51910.1 55.682 88 37 2 163 249 559 645 3.29e-23 98.6
Msa1437290 AT1G51910.1 41.718 163 70 4 22 162 275 434 1.80e-21 93.6
Msa1437290 AT2G28970.2 50.575 87 43 0 163 249 430 516 1.20e-22 97.1
Msa1437290 AT2G28970.2 34.783 184 100 5 2 166 118 300 1.44e-21 94.0
Msa1437290 AT2G28970.1 50.575 87 43 0 163 249 465 551 1.24e-22 97.1
Msa1437290 AT2G28970.1 34.783 184 100 5 2 166 153 335 1.55e-21 94.0
Msa1437290 AT3G46330.2 38.415 164 82 5 22 166 276 439 1.51e-22 96.7
Msa1437290 AT3G46330.2 43.678 87 49 0 163 249 528 614 3.03e-18 84.3
Msa1437290 AT3G46330.1 38.415 164 82 5 22 166 276 439 1.53e-22 96.7
Msa1437290 AT3G46330.1 43.678 87 49 0 163 249 552 638 2.99e-18 84.3
Msa1437290 AT5G59650.1 39.459 185 87 8 4 166 257 438 1.66e-22 96.7
Msa1437290 AT5G59650.1 48.276 87 45 0 163 249 565 651 5.22e-16 77.8
Msa1437290 AT2G19190.1 34.659 176 97 5 8 166 267 441 1.44e-21 94.0
Msa1437290 AT2G19190.1 48.485 99 48 2 153 249 548 645 5.28e-21 92.4
Msa1437290 AT2G28990.2 49.425 87 44 0 163 249 563 649 2.05e-21 93.6
Msa1437290 AT2G28990.2 34.759 187 96 7 2 166 250 432 3.43e-20 89.7
Msa1437290 AT2G28990.1 49.425 87 44 0 163 249 563 649 2.05e-21 93.6
Msa1437290 AT2G28990.1 34.759 187 96 7 2 166 250 432 3.43e-20 89.7
Msa1437290 AT5G59670.2 48.889 90 46 0 160 249 547 636 2.12e-21 93.6
Msa1437290 AT5G59670.2 36.747 166 85 6 21 166 272 437 6.26e-20 89.0
Msa1437290 AT5G59670.1 48.889 90 46 0 160 249 547 636 2.12e-21 93.6
Msa1437290 AT5G59670.1 36.747 166 85 6 21 166 272 437 6.26e-20 89.0
Msa1437290 AT4G20450.1 50.000 94 45 1 156 249 572 663 2.35e-21 93.2
Msa1437290 AT4G20450.1 35.152 165 87 5 22 166 293 457 2.08e-19 87.4
Msa1437290 AT4G20450.2 50.000 94 45 1 156 249 572 663 2.64e-21 93.2
Msa1437290 AT4G20450.2 35.152 165 87 5 22 166 293 457 2.24e-19 87.4
Msa1437290 AT1G07560.1 51.190 84 41 0 166 249 559 642 4.70e-21 92.4
Msa1437290 AT1G07560.1 35.366 164 86 5 22 166 277 439 2.23e-18 84.7
Msa1437290 AT2G14510.2 50.000 88 43 1 162 249 556 642 4.71e-21 92.4
Msa1437290 AT2G14510.2 31.285 179 100 7 4 162 267 442 1.65e-16 79.0
Msa1437290 AT2G14510.1 50.000 88 43 1 162 249 548 634 5.07e-21 92.4
Msa1437290 AT2G14510.1 31.285 179 100 7 4 162 259 434 1.93e-16 79.0
Msa1437290 AT2G28960.1 43.689 103 53 1 152 249 411 513 5.10e-21 92.4
Msa1437290 AT2G28960.1 37.423 163 82 7 23 166 142 303 1.84e-17 82.0
Msa1437290 AT5G16900.1 50.617 81 40 0 169 249 565 645 6.42e-21 92.0
Msa1437290 AT5G16900.1 30.636 173 92 6 22 166 269 441 2.34e-13 69.7
Msa1437290 AT5G16900.3 50.617 81 40 0 169 249 565 645 6.42e-21 92.0
Msa1437290 AT5G16900.3 30.636 173 92 6 22 166 269 441 2.34e-13 69.7
Msa1437290 AT2G28960.2 43.689 103 53 1 152 249 543 645 6.57e-21 92.0
Msa1437290 AT2G28960.2 37.423 163 82 7 23 166 274 435 2.30e-17 81.6
Msa1437290 AT5G16900.4 50.617 81 40 0 169 249 379 459 6.63e-21 92.0
Msa1437290 AT5G16900.4 30.636 173 92 6 22 166 83 255 1.33e-13 70.5
Msa1437290 AT2G14440.1 50.000 88 43 1 162 249 549 635 8.79e-21 91.7
Msa1437290 AT2G14440.1 31.492 181 97 6 4 162 260 435 6.03e-19 86.3
Msa1437290 AT1G51790.2 30.857 175 105 4 8 166 264 438 3.19e-20 90.1
Msa1437290 AT1G51790.2 42.857 84 47 1 166 249 618 700 5.37e-14 71.6
Msa1437290 AT1G51790.3 30.857 175 105 4 8 166 264 438 3.88e-20 89.7
Msa1437290 AT1G51790.3 42.857 84 47 1 166 249 566 648 6.33e-14 71.6
Msa1437290 AT1G51790.1 30.857 175 105 4 8 166 264 438 3.88e-20 89.7
Msa1437290 AT1G51790.1 42.857 84 47 1 166 249 566 648 6.33e-14 71.6
Msa1437290 AT1G07550.1 33.516 182 101 6 4 166 257 437 7.28e-20 89.0
Msa1437290 AT1G07550.1 45.238 84 45 1 166 249 549 631 3.96e-17 80.9
Msa1437290 AT2G29000.1 47.126 87 46 0 163 249 551 637 8.99e-20 88.6
Msa1437290 AT2G29000.1 37.576 165 81 6 22 166 271 433 1.81e-16 79.0
Msa1437290 AT5G59650.2 36.269 193 90 9 4 166 257 446 2.86e-18 84.3
Msa1437290 AT5G59650.2 48.276 87 45 0 163 249 573 659 4.99e-16 77.8
Msa1437290 AT5G59660.2 38.060 134 64 5 52 166 222 355 1.14e-16 79.7
Msa1437290 AT5G59660.2 48.611 72 37 0 154 225 465 536 6.13e-14 71.6
Msa1437290 AT5G59660.3 38.060 134 64 5 52 166 244 377 1.40e-16 79.3
Msa1437290 AT5G59660.3 48.611 72 37 0 154 225 490 561 6.47e-14 71.6
Msa1437290 AT5G59660.1 38.060 134 64 5 52 166 244 377 1.42e-16 79.3
Msa1437290 AT5G59660.1 48.611 72 37 0 154 225 487 558 6.52e-14 71.2
Msa1437290 AT4G29180.3 44.330 97 41 1 166 249 553 649 3.28e-16 78.2
Msa1437290 AT4G29180.3 29.932 147 92 3 2 138 262 407 1.28e-13 70.5
Msa1437290 AT4G29180.1 44.330 97 41 1 166 249 554 650 3.31e-16 78.2
Msa1437290 AT4G29180.2 44.330 97 41 1 166 249 556 652 3.61e-16 78.2
Msa1437290 AT4G29180.2 29.932 147 92 3 2 138 262 407 1.35e-13 70.5
Msa1437290 AT4G29450.1 43.750 96 42 2 166 249 555 650 7.56e-16 77.0
Msa1437290 AT4G29450.1 29.134 127 80 2 21 137 281 407 1.20e-12 67.8
Msa1437290 AT1G51620.2 48.193 83 42 1 167 249 37 118 3.55e-15 74.3
Msa1437290 AT5G16900.2 48.529 68 35 0 169 236 565 632 1.60e-14 73.2
Msa1437290 AT5G16900.2 30.636 173 92 6 22 166 269 441 4.20e-13 68.9
Msa1437290 AT1G10620.1 41.111 90 51 1 153 240 344 433 6.59e-14 71.2
Msa1437290 AT5G61350.1 36.752 117 67 3 140 249 481 597 2.20e-13 69.7
Msa1437290 AT5G28680.1 39.394 99 55 2 156 249 495 593 2.95e-13 69.3
Msa1437290 AT5G28680.2 39.394 99 55 2 156 249 495 593 2.95e-13 69.3
Msa1437290 AT3G04690.1 39.394 99 55 2 156 249 491 589 4.16e-13 68.9
Msa1437290 AT1G79620.3 41.758 91 50 2 153 240 611 701 4.27e-13 68.9
Msa1437290 AT1G79620.2 41.758 91 50 2 153 240 611 701 4.86e-13 68.9
Msa1437290 AT1G79620.1 41.758 91 50 2 153 240 611 701 5.31e-13 68.9
Msa1437290 AT1G79620.5 41.758 91 50 2 153 240 637 727 5.34e-13 68.9
Msa1437290 AT5G54590.1 34.167 120 72 1 137 249 66 185 1.06e-12 66.2
Msa1437290 AT1G23540.1 37.778 90 54 1 153 240 345 434 1.46e-12 67.4
Msa1437290 AT5G54590.3 33.600 125 76 1 132 249 61 185 1.52e-12 67.0
Msa1437290 AT5G54590.4 33.600 125 76 1 132 249 61 185 1.52e-12 67.0
Msa1437290 AT5G54590.2 33.600 125 76 1 132 249 61 185 1.52e-12 67.0
Msa1437290 AT1G23540.2 37.778 90 54 1 153 240 345 434 1.55e-12 67.0
Msa1437290 AT4G39110.1 39.506 81 47 1 171 249 518 598 1.76e-12 67.0
Msa1437290 AT4G32710.1 39.796 98 56 2 154 249 365 461 1.85e-12 67.0
Msa1437290 AT1G49270.1 36.471 85 52 1 167 249 324 408 2.55e-12 66.6
Msa1437290 AT3G24790.1 31.667 120 78 3 134 249 1 120 6.23e-12 65.1
Msa1437290 AT3G24790.2 31.667 120 78 3 134 249 19 138 7.15e-12 65.1
Msa1437290 AT3G24550.1 38.824 85 50 1 167 249 268 352 7.50e-12 65.1
Msa1437290 AT2G21480.1 37.037 81 49 1 171 249 517 597 8.05e-12 65.1
Msa1437290 AT1G70460.1 40.789 76 43 1 167 240 341 416 1.33e-11 64.7
Msa1437290 AT5G54380.1 32.941 85 55 1 167 249 498 582 1.92e-11 63.9
Msa1437290 AT2G37050.2 38.961 77 46 1 171 246 597 673 2.52e-11 63.5
Msa1437290 AT2G37050.4 38.961 77 46 1 171 246 598 674 2.52e-11 63.5
Msa1437290 AT2G37050.1 38.961 77 46 1 171 246 597 673 3.26e-11 63.5
Msa1437290 AT1G70450.1 36.364 88 54 1 155 240 25 112 3.30e-11 63.2
Msa1437290 AT2G37050.3 38.961 77 46 1 171 246 598 674 3.33e-11 63.5
Msa1437290 AT3G18810.1 35.294 85 53 1 167 249 325 409 3.37e-11 63.2
Msa1437290 AT4G23180.3 33.333 111 72 1 141 249 310 420 4.32e-11 62.8
Msa1437290 AT4G23180.1 36.559 93 57 1 159 249 328 420 5.69e-11 62.8
Msa1437290 AT4G23180.2 33.333 111 72 1 141 249 310 420 6.42e-11 62.4
Msa1437290 AT3G24540.1 36.471 85 52 1 167 249 171 255 7.31e-11 62.0
Msa1437290 AT5G15730.1 36.170 94 55 1 156 249 98 186 7.39e-11 62.0
Msa1437290 AT5G15730.3 36.170 94 55 1 156 249 98 186 7.83e-11 62.0
Msa1437290 AT5G15730.2 36.170 94 55 1 156 249 98 186 7.83e-11 62.0
Msa1437290 AT5G56890.1 35.556 90 56 1 162 249 706 795 8.07e-11 62.4
Msa1437290 AT3G51550.1 34.000 100 63 2 153 249 510 609 8.74e-11 62.0
Msa1437290 AT1G52290.2 37.647 85 51 1 167 249 131 215 8.93e-11 61.6

Find 54 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACTTCCAGCGGTTTAAT+TGG 0.192363 tig0028256:-40739 Msa1437290:intron
TTTGATTTGCATCGAGCTTC+TGG 0.227717 tig0028256:+42416 None:intergenic
AAATACTTGACAGGTCTTAT+AGG 0.242464 tig0028256:-38058 Msa1437290:CDS
CTAAATGTGAAGTCAACTTA+TGG 0.264476 tig0028256:-40936 Msa1437290:intron
TTAATTGGAACTATAGCTTC+TGG 0.326254 tig0028256:-40724 Msa1437290:CDS
AATACTTGACAGGTCTTATA+GGG 0.376188 tig0028256:-38057 Msa1437290:CDS
CAATGTCGTCGAGACATATA+TGG 0.381553 tig0028256:-42236 Msa1437290:CDS
TAAATGTGAAGTCAACTTAT+GGG 0.390794 tig0028256:-40935 Msa1437290:intron
TACCAACATAGCTGCAGTTT+AGG 0.411492 tig0028256:+40857 None:intergenic
CTTATGGGATCAAGAGAAAC+TGG 0.413837 tig0028256:-40920 Msa1437290:CDS
GAAGATACAAAGGAATGAAT+AGG 0.428109 tig0028256:+42347 None:intergenic
TTTGAAAAGGTTGTGGAGAA+AGG 0.428970 tig0028256:-38329 Msa1437290:CDS
CAGAAACTTTGAAAAGGTTG+TGG 0.430911 tig0028256:-38336 Msa1437290:CDS
ATATTCTATTGACTTCAGAT+TGG 0.437899 tig0028256:+40696 None:intergenic
CTAAGCTGCCAGTGACAACT+TGG 0.444235 tig0028256:-42503 Msa1437290:intron
TAATTGGAACTATAGCTTCT+GGG 0.444237 tig0028256:-40723 Msa1437290:CDS
GTGAAACGAAGTTGGAACTT+TGG 0.448803 tig0028256:-42297 Msa1437290:CDS
GTTGTGGAGAAAGGAGCATC+TGG 0.469808 tig0028256:-38320 Msa1437290:CDS
CTTATAGGGTATTGTGATGA+TGG 0.472954 tig0028256:-38043 Msa1437290:CDS
GGCCTAAACTGCAGCTATGT+TGG 0.481031 tig0028256:-40859 Msa1437290:CDS
GGCATTATACTTGGGAAGGA+AGG 0.485026 tig0028256:+42474 None:intergenic
ATATGTGGAGGCATTATACT+TGG 0.487647 tig0028256:+42465 None:intergenic
CTGGAACAGTCTACCATGGC+TGG 0.488403 tig0028256:-38301 Msa1437290:CDS
GGAAAATTCCAAGTTGTCAC+TGG 0.491907 tig0028256:+42495 None:intergenic
AGTTATTAGTGAAACGAAGT+TGG 0.493413 tig0028256:-42305 Msa1437290:CDS
GTACTCCAGTGTCTTACTTG+TGG 0.508313 tig0028256:-40885 Msa1437290:CDS
CATTACCAGAAACTTTGAAA+AGG 0.512003 tig0028256:-38342 Msa1437290:CDS
ACTTACAAGTATATGATCCT+TGG 0.514030 tig0028256:+40826 None:intergenic
AAGTAAGACACTGGAGTACA+AGG 0.521279 tig0028256:+40889 None:intergenic
ACTCTAGATTAGAGCCATGT+TGG 0.527280 tig0028256:+38018 None:intergenic
GTTCATCATAAATACTTGAC+AGG 0.530148 tig0028256:-38067 Msa1437290:CDS
CCAGTGTCTTACTTGTGGAA+TGG 0.545016 tig0028256:-40880 Msa1437290:CDS
TAATAACTGATATATAATAC+AGG 0.545081 tig0028256:+42320 None:intergenic
GTCTCGACGACATTGAATAG+TGG 0.551109 tig0028256:+42244 None:intergenic
CAGATATCCTTGAGTTGATG+AGG 0.561128 tig0028256:+38238 None:intergenic
GTGCATGTACACATAATATG+TGG 0.566614 tig0028256:+42450 None:intergenic
TGGGATCAAGAGAAACTGGC+AGG 0.578914 tig0028256:-40916 Msa1437290:CDS
CTATCTTCCTCATCAACTCA+AGG 0.579253 tig0028256:-38245 Msa1437290:CDS
TGGAGGCATTATACTTGGGA+AGG 0.584867 tig0028256:+42470 None:intergenic
AAACTGCAGCTATGTTGGTA+CGG 0.585202 tig0028256:-40854 Msa1437290:CDS
TACAGGTTCTGAAGATACAA+AGG 0.605212 tig0028256:+42337 None:intergenic
CCATTCCACAAGTAAGACAC+TGG 0.617935 tig0028256:+40880 None:intergenic
CGTCGAGACATATATGGCAA+AGG 0.622385 tig0028256:-42230 Msa1437290:CDS
TATGTGGAGGCATTATACTT+GGG 0.630511 tig0028256:+42466 None:intergenic
AGCATTAACCATGACATGAG+GGG 0.634567 tig0028256:-42641 None:intergenic
TATCATGATCAATCCAGCCA+TGG 0.635701 tig0028256:+38288 None:intergenic
TCAGAAACATATCAAACCGA+TGG 0.637155 tig0028256:-42196 Msa1437290:intron
TCGACGACATTGAATAGTGG+TGG 0.637303 tig0028256:+42247 None:intergenic
ATATCTGCAATTTCAAGCAG+AGG 0.641697 tig0028256:-38222 Msa1437290:intron
CATGTACACATAATATGTGG+AGG 0.657421 tig0028256:+42453 None:intergenic
GCATCTGGAACAGTCTACCA+TGG 0.666857 tig0028256:-38305 Msa1437290:CDS
ATGTTGGTACGGATTCGCCA+AGG 0.677061 tig0028256:-40843 Msa1437290:CDS
CTGGATTGATCATGATACTG+AGG 0.708911 tig0028256:-38282 Msa1437290:CDS
TTGTGATGATGGCACCAACA+TGG 0.719558 tig0028256:-38032 Msa1437290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATATTTTTATTAAA+TGG - tig0028256:38739-38758 Msa1437290:intron 0.0%
!!! TTTTTTATTTTTATTTTAAT+TGG + tig0028256:39467-39486 None:intergenic 0.0%
!!! AAAATAAAAAAACAGTTTTT+TGG - tig0028256:39072-39091 Msa1437290:intron 10.0%
!!! CTTAATTTTTAAAAAAGAAT+TGG - tig0028256:39261-39280 Msa1437290:intron 10.0%
!!! TAAATATTTTTCTGATTTTT+TGG - tig0028256:39387-39406 Msa1437290:intron 10.0%
!!! TAAAGTTTGTTATTTAAATT+AGG - tig0028256:40714-40733 Msa1437290:CDS 10.0%
!!! TTTTATTTCTTCTTTATATT+TGG - tig0028256:41601-41620 Msa1437290:intron 10.0%
!! ATTTATATATCAAAAATGTA+TGG - tig0028256:41795-41814 Msa1437290:intron 10.0%
!! ATAAAAATAGATGATTTAAT+TGG - tig0028256:42075-42094 Msa1437290:intron 10.0%
!! TAAAAATAGATGATTTAATT+GGG - tig0028256:42076-42095 Msa1437290:intron 10.0%
!! TAATAACTGATATATAATAC+AGG + tig0028256:38330-38349 None:intergenic 15.0%
!! TTTAAAAATAAAATCTGATG+TGG + tig0028256:38785-38804 None:intergenic 15.0%
!!! AATTTTTCTACTAAAAAATC+TGG + tig0028256:39052-39071 None:intergenic 15.0%
!!! TACTTCGTTTTTTTTAAATT+AGG + tig0028256:39179-39198 None:intergenic 15.0%
!!! TCTATTTTTATTCTATTGTT+CGG + tig0028256:42066-42085 None:intergenic 15.0%
!! ATAATTTGACAATTTATGAT+CGG - tig0028256:42204-42223 Msa1437290:CDS 15.0%
!!! AGTTCAACATTTTTGTAAAT+GGG - tig0028256:38260-38279 Msa1437290:CDS 20.0%
!! TCTGAAAAAAAAAATTTACG+AGG + tig0028256:38663-38682 None:intergenic 20.0%
!! TTGGAAAAAAATAATTTACG+AGG - tig0028256:39549-39568 Msa1437290:intron 20.0%
!!! ATTGCATTTTTTTAATCATC+AGG - tig0028256:40505-40524 Msa1437290:intron 20.0%
!!! TCTTCTTCATTTGAAATATT+AGG - tig0028256:40814-40833 Msa1437290:intron 20.0%
!!! CTTCTTCATTTGAAATATTA+GGG - tig0028256:40815-40834 Msa1437290:intron 20.0%
!!! TTCTTCATTTGAAATATTAG+GGG - tig0028256:40816-40835 Msa1437290:intron 20.0%
!! TCAATTAATTATATTGCTTG+AGG - tig0028256:41127-41146 Msa1437290:intron 20.0%
!!! TTTTATTTACTGAAGAAACT+TGG - tig0028256:41202-41221 Msa1437290:intron 20.0%
!! AAAACTATACAAATTATGCA+AGG + tig0028256:41305-41324 None:intergenic 20.0%
!! TAGCCAAGTAATATATTAAT+GGG + tig0028256:41341-41360 None:intergenic 20.0%
!! AACTTTAAATAGAACATACT+TGG + tig0028256:41720-41739 None:intergenic 20.0%
!! GAGTTCAACATTTTTGTAAA+TGG - tig0028256:38259-38278 Msa1437290:CDS 25.0%
! AACTAAATAGTACATACCAT+CGG + tig0028256:38470-38489 None:intergenic 25.0%
! TTCTTACAATCTTATTCGTA+TGG - tig0028256:38566-38585 Msa1437290:intron 25.0%
! TCTTACAATCTTATTCGTAT+GGG - tig0028256:38567-38586 Msa1437290:intron 25.0%
!! AGGTAAGACATTTAAAATAC+TGG + tig0028256:39159-39178 None:intergenic 25.0%
! GAAATAACCTATATTACAGA+GGG - tig0028256:39610-39629 Msa1437290:intron 25.0%
!!! TTTTTTTCCCTCTGTAATAT+AGG + tig0028256:39620-39639 None:intergenic 25.0%
! TAGCATCAACTATTATCATA+AGG + tig0028256:39689-39708 None:intergenic 25.0%
! TAAATGTGAAGTCAACTTAT+GGG - tig0028256:39712-39731 Msa1437290:intron 25.0%
! TCATATACTTGTAAGTTATG+TGG - tig0028256:39828-39847 Msa1437290:intron 25.0%
!!! ATATTCTATTGACTTCAGAT+TGG + tig0028256:39954-39973 None:intergenic 25.0%
! GTTTCATTTGCTTGAAATAA+TGG + tig0028256:40295-40314 None:intergenic 25.0%
!! TTTGAAATATTAGGGGTAAT+AGG - tig0028256:40823-40842 Msa1437290:intron 25.0%
!!! CAAGGTTTATTTTTCTTTTG+GGG + tig0028256:41287-41306 None:intergenic 25.0%
!!! GCAAGGTTTATTTTTCTTTT+GGG + tig0028256:41288-41307 None:intergenic 25.0%
!!! TGCAAGGTTTATTTTTCTTT+TGG + tig0028256:41289-41308 None:intergenic 25.0%
! TACCCCATTAATATATTACT+TGG - tig0028256:41335-41354 Msa1437290:intron 25.0%
! AGCCAAGTAATATATTAATG+GGG + tig0028256:41340-41359 None:intergenic 25.0%
! GTAGCCAAGTAATATATTAA+TGG + tig0028256:41342-41361 None:intergenic 25.0%
!! TTGTCGCTTCATTAAATATA+AGG - tig0028256:41515-41534 Msa1437290:intron 25.0%
!! AGCTAATACAATTTTTACGA+GGG + tig0028256:41629-41648 None:intergenic 25.0%
!! AAGCTAATACAATTTTTACG+AGG + tig0028256:41630-41649 None:intergenic 25.0%
!!! GTGTGATTTTTAAGATAATC+AGG - tig0028256:42159-42178 Msa1437290:intron 25.0%
! ACAATTTATGATCGGTAAAT+TGG - tig0028256:42212-42231 Msa1437290:CDS 25.0%
GAAGATACAAAGGAATGAAT+AGG + tig0028256:38303-38322 None:intergenic 30.0%
AGTTATTAGTGAAACGAAGT+TGG - tig0028256:38342-38361 Msa1437290:CDS 30.0%
CATGTAAATAATGAAGTGCA+TGG + tig0028256:38541-38560 None:intergenic 30.0%
CATGCACTTCATTATTTACA+TGG - tig0028256:38539-38558 Msa1437290:intron 30.0%
ACCAAACCGAAAATTTCTTA+GGG + tig0028256:38634-38653 None:intergenic 30.0%
AACCAAACCGAAAATTTCTT+AGG + tig0028256:39577-39596 None:intergenic 30.0%
TGGAAAATTAATTTCACACG+TGG + tig0028256:38765-38784 None:intergenic 30.0%
! TGTAAAATGTTTTTCACACG+TGG - tig0028256:39441-39460 Msa1437290:intron 30.0%
AAACCAAACCGAAAATTTCT+TGG - tig0028256:39576-39595 Msa1437290:intron 30.0%
AACCAAACCGAAAATTTCTT+GGG - tig0028256:39577-39596 Msa1437290:intron 30.0%
GGAAATAACCTATATTACAG+AGG - tig0028256:39609-39628 Msa1437290:intron 30.0%
CTATACAGTGAATACGAATA+GGG + tig0028256:39652-39671 None:intergenic 30.0%
ACTATACAGTGAATACGAAT+AGG + tig0028256:39653-39672 None:intergenic 30.0%
! CATAAGTTGACTTCACATTT+AGG + tig0028256:39713-39732 None:intergenic 30.0%
CTAAATGTGAAGTCAACTTA+TGG - tig0028256:39711-39730 Msa1437290:intron 30.0%
ACTTACAAGTATATGATCCT+TGG + tig0028256:39824-39843 None:intergenic 30.0%
TTAATTGGAACTATAGCTTC+TGG - tig0028256:39923-39942 Msa1437290:intron 30.0%
TAATTGGAACTATAGCTTCT+GGG - tig0028256:39924-39943 Msa1437290:intron 30.0%
TAAGTCGAATACAATTTGAC+TGG - tig0028256:40084-40103 Msa1437290:intron 30.0%
AAACTCGATTCTGGTAAAAT+CGG - tig0028256:40183-40202 Msa1437290:intron 30.0%
!! CGAGTTTAATGCTTTAAGAA+TGG - tig0028256:40263-40282 Msa1437290:intron 30.0%
!! TAATGCTTTAAGAATGGCAT+TGG - tig0028256:40269-40288 Msa1437290:intron 30.0%
GGAAGCGATTGAAATTATTT+CGG - tig0028256:40373-40392 Msa1437290:intron 30.0%
TATCCGATTCAAACTTCAAA+AGG - tig0028256:40425-40444 Msa1437290:intron 30.0%
!!! GTACCTTTTGAAGTTTGAAT+CGG + tig0028256:40431-40450 None:intergenic 30.0%
! GAAGCTTTGATGATCAATAA+AGG + tig0028256:40468-40487 None:intergenic 30.0%
TCATAGATGCATCTAAATAG+CGG - tig0028256:40553-40572 Msa1437290:intron 30.0%
TGGAATATAACAGATGTTCA+TGG - tig0028256:40856-40875 Msa1437290:CDS 30.0%
! ACTCTCGATTTGTAAAACAT+TGG - tig0028256:41014-41033 Msa1437290:intron 30.0%
ATCTTCATCTAAGTTATCCT+AGG - tig0028256:41091-41110 Msa1437290:intron 30.0%
ATTTACTGAAGAAACTTGGA+AGG - tig0028256:41206-41225 Msa1437290:intron 30.0%
! GCTACTCTAAACAATTTTGT+TGG - tig0028256:41357-41376 Msa1437290:intron 30.0%
! CTAATACAATTTTTACGAGG+GGG + tig0028256:41627-41646 None:intergenic 30.0%
! GCTAATACAATTTTTACGAG+GGG + tig0028256:41628-41647 None:intergenic 30.0%
! ATTACTGTATGTGCAAGTTT+TGG - tig0028256:41853-41872 Msa1437290:intron 30.0%
ATTCATGCAACAAGAGAAAT+GGG - tig0028256:41902-41921 Msa1437290:intron 30.0%
! CATTACCAGAAACTTTGAAA+AGG - tig0028256:42305-42324 Msa1437290:CDS 30.0%
ATGAACTACAGCAAAAAGTT+TGG + tig0028256:42566-42585 None:intergenic 30.0%
GTTCATCATAAATACTTGAC+AGG - tig0028256:42580-42599 Msa1437290:intron 30.0%
! AAATACTTGACAGGTCTTAT+AGG - tig0028256:42589-42608 Msa1437290:intron 30.0%
! AATACTTGACAGGTCTTATA+GGG - tig0028256:42590-42609 Msa1437290:intron 30.0%
! AGTTTTCACTATGCAACCAT+AGG + tig0028256:38119-38138 None:intergenic 35.0%
!! TATGTGGAGGCATTATACTT+GGG + tig0028256:38184-38203 None:intergenic 35.0%
!! ATATGTGGAGGCATTATACT+TGG + tig0028256:38185-38204 None:intergenic 35.0%
CATGTACACATAATATGTGG+AGG + tig0028256:38197-38216 None:intergenic 35.0%
GTGCATGTACACATAATATG+TGG + tig0028256:38200-38219 None:intergenic 35.0%
!! TACAGGTTCTGAAGATACAA+AGG + tig0028256:38313-38332 None:intergenic 35.0%
TCAGAAACATATCAAACCGA+TGG - tig0028256:38451-38470 Msa1437290:intron 35.0%
! TTCCTTTTGTAGTCATTTCC+AGG - tig0028256:38602-38621 Msa1437290:intron 35.0%
AACCTGGAAATGACTACAAA+AGG + tig0028256:38607-38626 None:intergenic 35.0%
AAACCGAAAATTTCTTAGGG+GGG + tig0028256:38631-38650 None:intergenic 35.0%
CAAACCGAAAATTTCTTAGG+GGG + tig0028256:38632-38651 None:intergenic 35.0%
CCAAACCGAAAATTTCTTAG+GGG + tig0028256:38633-38652 None:intergenic 35.0%
!! TACATTTTGCTGAGTTGGAT+GGG + tig0028256:39516-39535 None:intergenic 35.0%
!! TTACATTTTGCTGAGTTGGA+TGG + tig0028256:39515-39534 None:intergenic 35.0%
! CGTATTACATTTTGCTGAGT+TGG + tig0028256:39511-39530 None:intergenic 35.0%
ACTCAGCAAAATGTAATACG+TGG - tig0028256:38703-38722 Msa1437290:intron 35.0%
ACTCAGCAAAATGTAATACG+TGG + tig0028256:38703-38722 None:intergenic 35.0%
! CGTATTACATTTTGCTGAGT+TGG - tig0028256:39511-39530 Msa1437290:intron 35.0%
!! TTACATTTTGCTGAGTTGGA+TGG - tig0028256:39515-39534 Msa1437290:intron 35.0%
!! TACATTTTGCTGAGTTGGAT+GGG - tig0028256:39516-39535 Msa1437290:intron 35.0%
! GTTTCCTCCCAAGAAATTTT+CGG + tig0028256:39587-39606 None:intergenic 35.0%
AAATTTCTTGGGAGGAAACT+TGG - tig0028256:39588-39607 Msa1437290:intron 35.0%
AGTTCCTGAAGGATTATCAT+CGG + tig0028256:39874-39893 None:intergenic 35.0%
TTAACTTCCAGCGGTTTAAT+TGG - tig0028256:39908-39927 Msa1437290:intron 35.0%
TATAGTTCCAATTAAACCGC+TGG + tig0028256:39918-39937 None:intergenic 35.0%
TTCACCTAAACACGTAAACT+CGG + tig0028256:40147-40166 None:intergenic 35.0%
GTCTCATATCATTTCTCAGT+TGG - tig0028256:40352-40371 Msa1437290:intron 35.0%
AGCGATTGAAATTATTTCGG+TGG - tig0028256:40376-40395 Msa1437290:intron 35.0%
GAATCGGATACAACGTTAAT+TGG + tig0028256:40415-40434 None:intergenic 35.0%
ACTGTTAGCATCTCATGAAT+TGG - tig0028256:40595-40614 Msa1437290:intron 35.0%
!! TTGTTTCTAGTTCACAACCA+TGG - tig0028256:40741-40760 Msa1437290:intron 35.0%
TTAGGGGTAATAGGACATAT+TGG - tig0028256:40832-40851 Msa1437290:CDS 35.0%
TAGGGGTAATAGGACATATT+GGG - tig0028256:40833-40852 Msa1437290:CDS 35.0%
TTGAATAATCAAGTCAGCCT+AGG + tig0028256:41111-41130 None:intergenic 35.0%
TACTATTCTTTGAACGCACA+AGG + tig0028256:41688-41707 None:intergenic 35.0%
ACTAACACATCACGTACAAA+AGG + tig0028256:41765-41784 None:intergenic 35.0%
GATTCATGCAACAAGAGAAA+TGG - tig0028256:41901-41920 Msa1437290:intron 35.0%
GTTCCATTAGTAGTATCAGT+TGG - tig0028256:41937-41956 Msa1437290:intron 35.0%
ATATACTACAAGAGACACCA+AGG - tig0028256:42003-42022 Msa1437290:intron 35.0%
GCTTTCTATTCCATTGACAT+TGG - tig0028256:42034-42053 Msa1437290:intron 35.0%
TCTATTCCATTGACATTGGT+AGG - tig0028256:42038-42057 Msa1437290:intron 35.0%
! CACAACCTTTTCAAAGTTTC+TGG + tig0028256:42313-42332 None:intergenic 35.0%
! CAGAAACTTTGAAAAGGTTG+TGG - tig0028256:42311-42330 Msa1437290:CDS 35.0%
TTTGAAAAGGTTGTGGAGAA+AGG - tig0028256:42318-42337 Msa1437290:CDS 35.0%
ATATCTGCAATTTCAAGCAG+AGG - tig0028256:42425-42444 Msa1437290:CDS 35.0%
CTTGTGAACTGAAGGAATTA+TGG - tig0028256:42519-42538 Msa1437290:intron 35.0%
!! CTTATAGGGTATTGTGATGA+TGG - tig0028256:42604-42623 Msa1437290:intron 35.0%
TACTGAGCATCAATCACCTT+CGG - tig0028256:38089-38108 Msa1437290:intron 40.0%
GGAAAATTCCAAGTTGTCAC+TGG + tig0028256:38155-38174 None:intergenic 40.0%
!! TTTGATTTGCATCGAGCTTC+TGG + tig0028256:38234-38253 None:intergenic 40.0%
GTGAAACGAAGTTGGAACTT+TGG - tig0028256:38350-38369 Msa1437290:CDS 40.0%
CAATGTCGTCGAGACATATA+TGG - tig0028256:38411-38430 Msa1437290:intron 40.0%
! TTCCCCCCCTAAGAAATTTT+CGG - tig0028256:38625-38644 Msa1437290:intron 40.0%
AACCGAAAATTTCTTAGGGG+GGG + tig0028256:38630-38649 None:intergenic 40.0%
! CCCCTAAGAAATTTTCGGTT+TGG - tig0028256:38630-38649 Msa1437290:intron 40.0%
!! ACATTTTGCTGAGTTGGATG+GGG + tig0028256:39517-39536 None:intergenic 40.0%
! CTCCCAAGAAATTTTCGGTT+TGG + tig0028256:39582-39601 None:intergenic 40.0%
CAAACCGAAAATTTCTTGGG+AGG - tig0028256:39580-39599 Msa1437290:intron 40.0%
CTTATGGGATCAAGAGAAAC+TGG - tig0028256:39727-39746 Msa1437290:intron 40.0%
AAGTAAGACACTGGAGTACA+AGG + tig0028256:39761-39780 None:intergenic 40.0%
TACCAACATAGCTGCAGTTT+AGG + tig0028256:39793-39812 None:intergenic 40.0%
AAACTGCAGCTATGTTGGTA+CGG - tig0028256:39793-39812 Msa1437290:intron 40.0%
!! TTCTGGAACTTAACTTCCAG+CGG - tig0028256:39899-39918 Msa1437290:intron 40.0%
GTTACCGAGTTTACGTGTTT+AGG - tig0028256:40140-40159 Msa1437290:intron 40.0%
TAGGTGAAACGTGTTAACTC+AGG - tig0028256:40159-40178 Msa1437290:intron 40.0%
AACTCAGGTAAACTCGATTC+TGG - tig0028256:40174-40193 Msa1437290:intron 40.0%
TGACTTTGACCGAGTTAACT+CGG - tig0028256:40211-40230 Msa1437290:intron 40.0%
GAGTTTACTCCGAGTTAACT+CGG + tig0028256:40223-40242 None:intergenic 40.0%
TGAGACTTTCACTGCATAGT+AGG + tig0028256:40338-40357 None:intergenic 40.0%
TACCTAGGTAAAACGAGTTG+AGG - tig0028256:40988-41007 Msa1437290:intron 40.0%
! TACCTCAACTCGTTTTACCT+AGG + tig0028256:40993-41012 None:intergenic 40.0%
AAGGAAATCAGCTATCAGCA+GGG - tig0028256:41225-41244 Msa1437290:intron 40.0%
GCGAATCCCTTCATAACAAT+GGG - tig0028256:41248-41267 Msa1437290:intron 40.0%
CGAATCCCTTCATAACAATG+GGG - tig0028256:41249-41268 Msa1437290:intron 40.0%
TGCTACCCCATTGTTATGAA+GGG + tig0028256:41257-41276 None:intergenic 40.0%
ATGCTACCCCATTGTTATGA+AGG + tig0028256:41258-41277 None:intergenic 40.0%
TCATAACAATGGGGTAGCAT+TGG - tig0028256:41258-41277 Msa1437290:intron 40.0%
TCTCTTGTTGCATGAATCTG+AGG + tig0028256:41899-41918 None:intergenic 40.0%
CAACAAGAGAAATGGGAGTA+AGG - tig0028256:41909-41928 Msa1437290:intron 40.0%
CCACCAACTGATACTACTAA+TGG + tig0028256:41943-41962 None:intergenic 40.0%
CCATTAGTAGTATCAGTTGG+TGG - tig0028256:41940-41959 Msa1437290:intron 40.0%
ATAGAAAGCCAAACCTACCT+TGG + tig0028256:42023-42042 None:intergenic 40.0%
TATCATGATCAATCCAGCCA+TGG + tig0028256:42362-42381 None:intergenic 40.0%
CTGGATTGATCATGATACTG+AGG - tig0028256:42365-42384 Msa1437290:CDS 40.0%
CTATCTTCCTCATCAACTCA+AGG - tig0028256:42402-42421 Msa1437290:CDS 40.0%
!! CAGATATCCTTGAGTTGATG+AGG + tig0028256:42412-42431 None:intergenic 40.0%
ACGATGTTCTTGTGAACTGA+AGG - tig0028256:42511-42530 Msa1437290:intron 40.0%
! GGTTTTCCTTTCTGATTCAC+AGG - tig0028256:42540-42559 Msa1437290:intron 40.0%
AGGTGATTGATGCTCAGTAC+AGG + tig0028256:38088-38107 None:intergenic 45.0%
GGCATTATACTTGGGAAGGA+AGG + tig0028256:38176-38195 None:intergenic 45.0%
!! TGGAGGCATTATACTTGGGA+AGG + tig0028256:38180-38199 None:intergenic 45.0%
TCGACGACATTGAATAGTGG+TGG + tig0028256:38403-38422 None:intergenic 45.0%
GTCTCGACGACATTGAATAG+TGG + tig0028256:38406-38425 None:intergenic 45.0%
CGTCGAGACATATATGGCAA+AGG - tig0028256:38417-38436 Msa1437290:intron 45.0%
!! CATTTTGCTGAGTTGGATGG+GGG + tig0028256:39518-39537 None:intergenic 45.0%
!! TGTAATACGTGGCGCTGATT+TGG - tig0028256:38714-38733 Msa1437290:intron 45.0%
!! ATTTTGCTGAGTTGGATGGG+AGG - tig0028256:39519-39538 Msa1437290:intron 45.0%
!! TTTTGCTGAGTTGGATGGGA+GGG - tig0028256:39520-39539 Msa1437290:intron 45.0%
GTACTCCAGTGTCTTACTTG+TGG - tig0028256:39762-39781 Msa1437290:intron 45.0%
CCATTCCACAAGTAAGACAC+TGG + tig0028256:39770-39789 None:intergenic 45.0%
CCAGTGTCTTACTTGTGGAA+TGG - tig0028256:39767-39786 Msa1437290:intron 45.0%
TACGCCGATGATAATCCTTC+AGG - tig0028256:39867-39886 Msa1437290:intron 45.0%
CCAGAAGCTATAGTTCCTGA+AGG + tig0028256:39885-39904 None:intergenic 45.0%
CCTTCAGGAACTATAGCTTC+TGG - tig0028256:39882-39901 Msa1437290:intron 45.0%
TTCACAACCATGGCTTCTGA+TGG - tig0028256:40751-40770 Msa1437290:intron 45.0%
CCATTTACCATCAGAAGCCA+TGG + tig0028256:40761-40780 None:intergenic 45.0%
CCATGGCTTCTGATGGTAAA+TGG - tig0028256:40758-40777 Msa1437290:intron 45.0%
TGGCTTCTGATGGTAAATGG+TGG - tig0028256:40761-40780 Msa1437290:intron 45.0%
GGGTAATAGGACATATTGGG+TGG - tig0028256:40836-40855 Msa1437290:CDS 45.0%
! CAGATGTTCATGGTGATGCT+AGG - tig0028256:40866-40885 Msa1437290:CDS 45.0%
GTTACGAGTCGAGTTTACCT+AGG - tig0028256:40973-40992 Msa1437290:intron 45.0%
CGTAGCTGAGATAGGAAATC+AGG + tig0028256:41045-41064 None:intergenic 45.0%
! TCAAGAAGCGTAGCTGAGAT+AGG + tig0028256:41053-41072 None:intergenic 45.0%
GAAGGAAATCAGCTATCAGC+AGG - tig0028256:41224-41243 Msa1437290:intron 45.0%
AGGAAATCAGCTATCAGCAG+GGG - tig0028256:41226-41245 Msa1437290:intron 45.0%
GGCGAATCCCTTCATAACAA+TGG - tig0028256:41247-41266 Msa1437290:intron 45.0%
! AATTGTATTAGCTTCGCCGC+TGG - tig0028256:41636-41655 Msa1437290:intron 45.0%
GAATTGATCCTGATAGCCAG+CGG + tig0028256:41655-41674 None:intergenic 45.0%
GAACGCACAAGGAGTTGTAT+TGG + tig0028256:41677-41696 None:intergenic 45.0%
ACTACAAGAGACACCAAGGT+AGG - tig0028256:42007-42026 Msa1437290:intron 45.0%
AAGAGACACCAAGGTAGGTT+TGG - tig0028256:42012-42031 Msa1437290:intron 45.0%
GTTTGGCCTGTGAATCAGAA+AGG + tig0028256:42549-42568 None:intergenic 45.0%
!! TTGTGATGATGGCACCAACA+TGG - tig0028256:42615-42634 Msa1437290:intron 45.0%
!!! TTTTAATATTTTTTAGTTTT+GGG + tig0028256:38842-38861 None:intergenic 5.0%
!!! TTTTTAATATTTTTTAGTTT+TGG + tig0028256:38843-38862 None:intergenic 5.0%
!!! TTATATAAAATTTCAATTTT+AGG - tig0028256:40928-40947 Msa1437290:intron 5.0%
CTAAGCTGCCAGTGACAACT+TGG - tig0028256:38144-38163 Msa1437290:intron 50.0%
AATTTCTTAGGGGGGGAACC+TGG + tig0028256:38623-38642 None:intergenic 50.0%
! TTTGCTGAGTTGGATGGGAG+GGG - tig0028256:39521-39540 Msa1437290:intron 50.0%
!!! TTGGATGGGAGGGGGTATTT+TGG - tig0028256:39530-39549 Msa1437290:intron 50.0%
TGGGATCAAGAGAAACTGGC+AGG - tig0028256:39731-39750 Msa1437290:intron 50.0%
GGCCTAAACTGCAGCTATGT+TGG - tig0028256:39788-39807 Msa1437290:intron 50.0%
ATGTTGGTACGGATTCGCCA+AGG - tig0028256:39804-39823 Msa1437290:intron 50.0%
TCGGCTCCTACCAATGTCAA+TGG + tig0028256:42047-42066 None:intergenic 50.0%
!! GTTGTGGAGAAAGGAGCATC+TGG - tig0028256:42327-42346 Msa1437290:CDS 50.0%
! GCATCTGGAACAGTCTACCA+TGG - tig0028256:42342-42361 Msa1437290:CDS 50.0%
GAGCATCAATCACCTTCGGC+TGG - tig0028256:38093-38112 Msa1437290:intron 55.0%
!! AATCACCTTCGGCTGGCCTA+TGG - tig0028256:38100-38119 Msa1437290:intron 55.0%
! TTGCTGAGTTGGATGGGGGA+GGG + tig0028256:38692-38711 None:intergenic 55.0%
! TTTGCTGAGTTGGATGGGGG+AGG + tig0028256:38693-38712 None:intergenic 55.0%
! TTGCTGAGTTGGATGGGAGG+GGG - tig0028256:39522-39541 Msa1437290:intron 55.0%
CTGGAACAGTCTACCATGGC+TGG - tig0028256:42346-42365 Msa1437290:CDS 55.0%
TGCAACCATAGGCCAGCCGA+AGG + tig0028256:38108-38127 None:intergenic 60.0%
! TGCTGAGTTGGATGGGGGAG+GGG + tig0028256:38691-38710 None:intergenic 60.0%
! TAGCTTCGCCGCTGGCTATC+AGG - tig0028256:41644-41663 Msa1437290:intron 60.0%
Chromosome Type Strat End Strand Name
tig0028256 gene 38021 42648 38021 ID=Msa1437290;Name=Msa1437290
tig0028256 mRNA 38021 42648 38021 ID=Msa1437290-mRNA-1;Parent=Msa1437290;Name=Msa1437290-mRNA-1;_AED=0.24;_eAED=0.25;_QI=0|0|0|0.83|0.8|0.66|6|0|249
tig0028256 exon 42642 42648 42642 ID=Msa1437290-mRNA-1:exon:10605;Parent=Msa1437290-mRNA-1
tig0028256 exon 42197 42520 42197 ID=Msa1437290-mRNA-1:exon:10604;Parent=Msa1437290-mRNA-1
tig0028256 exon 40832 40946 40832 ID=Msa1437290-mRNA-1:exon:10603;Parent=Msa1437290-mRNA-1
tig0028256 exon 40694 40750 40694 ID=Msa1437290-mRNA-1:exon:10602;Parent=Msa1437290-mRNA-1
tig0028256 exon 38223 38382 38223 ID=Msa1437290-mRNA-1:exon:10601;Parent=Msa1437290-mRNA-1
tig0028256 exon 38021 38107 38021 ID=Msa1437290-mRNA-1:exon:10600;Parent=Msa1437290-mRNA-1
tig0028256 CDS 42642 42648 42642 ID=Msa1437290-mRNA-1:cds;Parent=Msa1437290-mRNA-1
tig0028256 CDS 42197 42520 42197 ID=Msa1437290-mRNA-1:cds;Parent=Msa1437290-mRNA-1
tig0028256 CDS 40832 40946 40832 ID=Msa1437290-mRNA-1:cds;Parent=Msa1437290-mRNA-1
tig0028256 CDS 40694 40750 40694 ID=Msa1437290-mRNA-1:cds;Parent=Msa1437290-mRNA-1
tig0028256 CDS 38223 38382 38223 ID=Msa1437290-mRNA-1:cds;Parent=Msa1437290-mRNA-1
tig0028256 CDS 38021 38107 38021 ID=Msa1437290-mRNA-1:cds;Parent=Msa1437290-mRNA-1
Gene Sequence

>Msa1437290

ATGAGGGCTGCCAGTGACAACTTGGAATTTTCCTTCCTTCCCAAGTATAATGCCTCCACATATTATGTGTACATGCACTTTGCTGAAATCCAGAAGCTCGATGCAAATCAAATTAGAGAGTTCAACATTTTTGTAAATGGGCAGCTTATAAATAGTGACCTATTCATTCCTTTGTATCTTCAGAACCTGTATTATATATCAGTTATTAGTGAAACGAAGTTGGAACTTTGGTTTAATAAGACTAGTAGATCAACTCTTCCACCACTATTCAATGTCGTCGAGACATATATGGCAAAGGACTTCTTACAATCAGAAACATATCAAACCGATGTCAACTTATGGGATCAAGAGAAACTGGCAGGAGATCCTTGTACTCCAGTGTCTTACTTGTGGAATGGCCTAAACTGCAGCTATGTTGGTACGGATTCGCCAAGGATCATATACTTCGGTTTAATTGGAACTATAGCTTCTGGGATATCCAATCTGAAGTCAATAGAATATTTCTATGAAGAAGTGTTAAACATTACCAGAAACTTTGAAAAGGTTGTGGAGAAAGGAGCATCTGGAACAGTCTACCATGGCTGGATTGATCATGATACTGAGGTAGCTGTCAAAATGCTATCTTCCTCATCAACTCAAGGATATCTGCAATTTCAAGCAGAGGCCAAACTTTTTGCTGTAGTTCATCATAAATACTTGACAGGTCTTATAGGGTATTGTGATGATGGCACCAACATGGCTCTAATCTAG
Protein sequence

>Msa1437290

MRAASDNLEFSFLPKYNASTYYVYMHFAEIQKLDANQIREFNIFVNGQLINSDLFIPLYLQNLYYISVISETKLELWFNKTSRSTLPPLFNVVETYMAKDFLQSETYQTDVNLWDQEKLAGDPCTPVSYLWNGLNCSYVGTDSPRIIYFGLIGTIASGISNLKSIEYFYEEVLNITRNFEKVVEKGASGTVYHGWIDHDTEVAVKMLSSSSTQGYLQFQAEAKLFAVVHHKYLTGLIGYCDDGTNMALI*