Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437850 | XP_003625472.1 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.30e-89 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437850 | sp|F4JZT3|ARR24_ARATH | 63.025 | 119 | 44 | 0 | 9 | 127 | 16 | 134 | 1.28e-47 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437850 | G7KZK5 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.10e-89 | 265 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1437850 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437850 | MtrunA17_Chr8g0364781 | 67.442 | 129 | 39 | 2 | 1 | 126 | 1 | 129 | 9.38e-55 | 168 |
| Msa1437850 | MtrunA17_Chr7g0262671 | 94.805 | 77 | 4 | 0 | 1 | 77 | 1 | 77 | 1.93e-49 | 153 |
| Msa1437850 | MtrunA17_Chr7g0262351 | 59.200 | 125 | 50 | 1 | 5 | 129 | 16 | 139 | 7.51e-46 | 145 |
| Msa1437850 | MtrunA17_Chr7g0262681 | 93.548 | 62 | 4 | 0 | 69 | 130 | 5 | 66 | 7.57e-37 | 120 |
| Msa1437850 | MtrunA17_Chr6g0472261 | 54.054 | 74 | 34 | 0 | 4 | 77 | 3 | 76 | 1.11e-21 | 82.0 |
| Msa1437850 | MtrunA17_Chr6g0451941 | 34.211 | 114 | 75 | 0 | 11 | 124 | 33 | 146 | 2.47e-18 | 75.9 |
| Msa1437850 | MtrunA17_Chr8g0392301 | 27.820 | 133 | 79 | 1 | 14 | 129 | 864 | 996 | 1.38e-12 | 63.5 |
| Msa1437850 | MtrunA17_Chr5g0447641 | 41.791 | 67 | 39 | 0 | 14 | 80 | 1077 | 1143 | 1.22e-11 | 60.8 |
| Msa1437850 | MtrunA17_Chr8g0371601 | 30.597 | 134 | 72 | 3 | 11 | 123 | 1029 | 1162 | 1.74e-11 | 60.1 |
| Msa1437850 | MtrunA17_Chr5g0405701 | 30.000 | 150 | 74 | 4 | 11 | 129 | 1050 | 1199 | 7.46e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437850 | AT5G26594.1 | 63.025 | 119 | 44 | 0 | 9 | 127 | 16 | 134 | 1.30e-48 | 152 |
| Msa1437850 | AT3G04280.1 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1437850 | AT3G04280.2 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1437850 | AT3G04280.3 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1437850 | AT2G01830.5 | 30.657 | 137 | 82 | 2 | 2 | 125 | 922 | 1058 | 4.61e-13 | 65.1 |
| Msa1437850 | AT2G01830.2 | 30.657 | 137 | 82 | 2 | 2 | 125 | 933 | 1069 | 5.04e-13 | 65.1 |
| Msa1437850 | AT2G01830.1 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1437850 | AT2G01830.4 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1437850 | AT2G01830.6 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1437850 | AT2G01830.3 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1437850 | AT5G35750.1 | 28.889 | 135 | 74 | 2 | 14 | 126 | 1038 | 1172 | 1.63e-12 | 63.5 |
Find 31 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGATGTTGAATAAATT+TGG | 0.144966 | tig0028364:+51946 | Msa1437850:CDS |
| GCAATACTTAGTTCCATTCT+TGG | 0.228362 | tig0028364:+53297 | Msa1437850:CDS |
| TATCCATGTCCATGAGAATT+AGG | 0.311699 | tig0028364:-52038 | Msa1437850:intergenic |
| TGGATTGATCTTGCCAAGAA+TGG | 0.418939 | tig0028364:-53310 | Msa1437850:intergenic |
| CACAACCAGTGCTGTTAGCT+TGG | 0.421611 | tig0028364:-51893 | Msa1437850:intergenic |
| AAAATTCATGGAAGCTGGAT+TGG | 0.421768 | tig0028364:+53245 | Msa1437850:CDS |
| TGGTGTGTCATCACGCTCTA+TGG | 0.423024 | tig0028364:+53209 | Msa1437850:CDS |
| AGATGAAATACTAAAATTCA+TGG | 0.428022 | tig0028364:+53233 | Msa1437850:CDS |
| ACTAAGTATTGCATTGTTCA+AGG | 0.440010 | tig0028364:-53286 | Msa1437850:intergenic |
| AAGAAGCAGTGGACATTCAT+TGG | 0.445266 | tig0028364:+51998 | Msa1437850:CDS |
| ATACTAAAATTCATGGAAGC+TGG | 0.448559 | tig0028364:+53240 | Msa1437850:CDS |
| GGTATTTGTAGCACAATTGT+TGG | 0.475026 | tig0028364:+53189 | Msa1437850:CDS |
| AAAATTTGACCTAATTCTCA+TGG | 0.477878 | tig0028364:+52029 | Msa1437850:CDS |
| AAAAGTCAAGGTGTGGAGAA+TGG | 0.478580 | tig0028364:+51973 | Msa1437850:CDS |
| ACAAAGGAACTTCGTGCAAT+GGG | 0.482431 | tig0028364:+53168 | Msa1437850:CDS |
| CAAGCTAACAGCACTGGTTG+TGG | 0.482562 | tig0028364:+51894 | Msa1437850:CDS |
| ACCTCAATGCCATTCATGAT+AGG | 0.492567 | tig0028364:-52063 | Msa1437850:intergenic |
| CCTTGCATCCATCACACAGT+TGG | 0.511788 | tig0028364:-53330 | Msa1437850:intergenic |
| AACAAAGGAACTTCGTGCAA+TGG | 0.518430 | tig0028364:+53167 | Msa1437850:CDS |
| ATGGATATGCCTATCATGAA+TGG | 0.542735 | tig0028364:+52054 | Msa1437850:CDS |
| CTAAGTATTGCATTGTTCAA+GGG | 0.546876 | tig0028364:-53285 | Msa1437850:intergenic |
| CAGTGGACATTCATTGGCGT+GGG | 0.559565 | tig0028364:+52004 | Msa1437850:CDS |
| GCCTATCATGAATGGCATTG+AGG | 0.559799 | tig0028364:+52062 | Msa1437850:CDS |
| TGTATCCAAGCTAACAGCAC+TGG | 0.575373 | tig0028364:+51888 | Msa1437850:CDS |
| TGTGTTTATATAGGCAACAA+AGG | 0.581181 | tig0028364:+53152 | Msa1437850:intron |
| AGATCAATCCAACTGTGTGA+TGG | 0.583988 | tig0028364:+53322 | Msa1437850:CDS |
| TGACCTAATTCTCATGGACA+TGG | 0.592027 | tig0028364:+52035 | Msa1437850:CDS |
| GCAGTGGACATTCATTGGCG+TGG | 0.597898 | tig0028364:+52003 | Msa1437850:CDS |
| AAATTTGGAGTCAAAAGTCA+AGG | 0.637368 | tig0028364:+51961 | Msa1437850:CDS |
| TGGAGTCAAAAGTCAAGGTG+TGG | 0.637883 | tig0028364:+51966 | Msa1437850:CDS |
| GGAGAATGGAAAAGAAGCAG+TGG | 0.653869 | tig0028364:+51987 | Msa1437850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAATATAAATAAAAA+AGG | - | tig0028364:53120-53139 | Msa1437850:intergenic | 0.0% |
| !! | AATATAAATATAAATAAAAA+AGG | - | tig0028364:53120-53139 | Msa1437850:intergenic | 0.0% |
| !! | TATAAAAATATATAAACTTG+GGG | - | tig0028364:52308-52327 | Msa1437850:intergenic | 10.0% |
| !! | CATATAAAAATATATAAACT+TGG | - | tig0028364:52310-52329 | Msa1437850:intergenic | 10.0% |
| !!! | AAAAAAATATTTTACTTTTG+AGG | - | tig0028364:52674-52693 | Msa1437850:intergenic | 10.0% |
| !! | ACTAAAATTAACTATAAAAT+TGG | - | tig0028364:52844-52863 | Msa1437850:intergenic | 10.0% |
| !!! | AATTTTATAGTTAATTTTAG+TGG | + | tig0028364:52843-52862 | Msa1437850:intron | 10.0% |
| !! | TATAAAAATATATAAACTTG+GGG | - | tig0028364:52308-52327 | Msa1437850:intergenic | 10.0% |
| !! | CATATAAAAATATATAAACT+TGG | - | tig0028364:52310-52329 | Msa1437850:intergenic | 10.0% |
| !!! | AAAAAAATATTTTACTTTTG+AGG | - | tig0028364:52674-52693 | Msa1437850:intergenic | 10.0% |
| !! | ACTAAAATTAACTATAAAAT+TGG | - | tig0028364:52844-52863 | Msa1437850:intergenic | 10.0% |
| !!! | AATTTTATAGTTAATTTTAG+TGG | + | tig0028364:52843-52862 | Msa1437850:intron | 10.0% |
| !!! | ATATTTATATAGTTTGTTAG+AGG | + | tig0028364:52525-52544 | Msa1437850:intron | 15.0% |
| !! | AAATTAACTATAAAATTGGA+GGG | - | tig0028364:52840-52859 | Msa1437850:intergenic | 15.0% |
| !! | AAAATTAACTATAAAATTGG+AGG | - | tig0028364:52841-52860 | Msa1437850:intergenic | 15.0% |
| !!! | ATATTTATATAGTTTGTTAG+AGG | + | tig0028364:52525-52544 | Msa1437850:intron | 15.0% |
| !! | AAATTAACTATAAAATTGGA+GGG | - | tig0028364:52840-52859 | Msa1437850:intergenic | 15.0% |
| !! | AAAATTAACTATAAAATTGG+AGG | - | tig0028364:52841-52860 | Msa1437850:intergenic | 15.0% |
| !! | CAAAAGATGTTGAATAAATT+TGG | + | tig0028364:51946-51965 | Msa1437850:CDS | 20.0% |
| !! | CTCTATAATTAATTAAGTAC+AGG | - | tig0028364:52092-52111 | Msa1437850:intergenic | 20.0% |
| !! | TGATTATGGTCTATATAATT+TGG | + | tig0028364:52328-52347 | Msa1437850:intron | 20.0% |
| !! | GAAGAAAATGAAAATACTTA+TGG | + | tig0028364:52403-52422 | Msa1437850:intron | 20.0% |
| !! | AGATGAAATACTAAAATTCA+TGG | + | tig0028364:53233-53252 | Msa1437850:CDS | 20.0% |
| !! | CAAAAGATGTTGAATAAATT+TGG | + | tig0028364:51946-51965 | Msa1437850:CDS | 20.0% |
| !! | CTCTATAATTAATTAAGTAC+AGG | - | tig0028364:52092-52111 | Msa1437850:intergenic | 20.0% |
| !! | TGATTATGGTCTATATAATT+TGG | + | tig0028364:52328-52347 | Msa1437850:intron | 20.0% |
| !! | GAAGAAAATGAAAATACTTA+TGG | + | tig0028364:52403-52422 | Msa1437850:intron | 20.0% |
| !! | AGATGAAATACTAAAATTCA+TGG | + | tig0028364:53233-53252 | Msa1437850:CDS | 20.0% |
| !! | ACATCTTTTGATGAATCTTT+CGG | - | tig0028364:51936-51955 | Msa1437850:intergenic | 25.0% |
| ! | AAAATTTGACCTAATTCTCA+TGG | + | tig0028364:52029-52048 | Msa1437850:CDS | 25.0% |
| ! | TGATATATGTACAACCATTT+GGG | + | tig0028364:52115-52134 | Msa1437850:intron | 25.0% |
| !! | TTCATTTTCTCTCTTTTCAT+TGG | + | tig0028364:52155-52174 | Msa1437850:intron | 25.0% |
| ! | GTCAAAAAGTTGTAATAAAG+TGG | + | tig0028364:52248-52267 | Msa1437850:intron | 25.0% |
| ! | TAGTGTACTATTATTGTTCA+TGG | + | tig0028364:52381-52400 | Msa1437850:intron | 25.0% |
| !!! | TTATATAGTTTGTTAGAGGA+AGG | + | tig0028364:52529-52548 | Msa1437850:intron | 25.0% |
| ! | ACTAAAGGAATTTAAGAATG+AGG | - | tig0028364:52588-52607 | Msa1437850:intergenic | 25.0% |
| ! | TTAAATTCCTTTAGTGTTCA+GGG | + | tig0028364:52593-52612 | Msa1437850:intron | 25.0% |
| !!! | CTCATTTGATTTTGTTACTA+TGG | + | tig0028364:52732-52751 | Msa1437850:intron | 25.0% |
| !!! | GATAGTTTTATTGAGAAAGA+AGG | - | tig0028364:53009-53028 | Msa1437850:intergenic | 25.0% |
| ! | TGTGTGTTATGTGTTTATAT+AGG | + | tig0028364:53143-53162 | Msa1437850:intron | 25.0% |
| !! | ACATCTTTTGATGAATCTTT+CGG | - | tig0028364:51936-51955 | Msa1437850:intergenic | 25.0% |
| ! | AAAATTTGACCTAATTCTCA+TGG | + | tig0028364:52029-52048 | Msa1437850:CDS | 25.0% |
| ! | TGATATATGTACAACCATTT+GGG | + | tig0028364:52115-52134 | Msa1437850:intron | 25.0% |
| !! | TTCATTTTCTCTCTTTTCAT+TGG | + | tig0028364:52155-52174 | Msa1437850:intron | 25.0% |
| ! | GTCAAAAAGTTGTAATAAAG+TGG | + | tig0028364:52248-52267 | Msa1437850:intron | 25.0% |
| ! | TAGTGTACTATTATTGTTCA+TGG | + | tig0028364:52381-52400 | Msa1437850:intron | 25.0% |
| !!! | TTATATAGTTTGTTAGAGGA+AGG | + | tig0028364:52529-52548 | Msa1437850:intron | 25.0% |
| ! | ACTAAAGGAATTTAAGAATG+AGG | - | tig0028364:52588-52607 | Msa1437850:intergenic | 25.0% |
| ! | TTAAATTCCTTTAGTGTTCA+GGG | + | tig0028364:52593-52612 | Msa1437850:intron | 25.0% |
| !!! | CTCATTTGATTTTGTTACTA+TGG | + | tig0028364:52732-52751 | Msa1437850:intron | 25.0% |
| !!! | GATAGTTTTATTGAGAAAGA+AGG | - | tig0028364:53009-53028 | Msa1437850:intergenic | 25.0% |
| ! | TGTGTGTTATGTGTTTATAT+AGG | + | tig0028364:53143-53162 | Msa1437850:intron | 25.0% |
| ! | AAATTTGGAGTCAAAAGTCA+AGG | + | tig0028364:51961-51980 | Msa1437850:CDS | 30.0% |
| GTGATATATGTACAACCATT+TGG | + | tig0028364:52114-52133 | Msa1437850:intron | 30.0% | |
| TTAGAGGAAGGAGAAATTAT+TGG | + | tig0028364:52541-52560 | Msa1437850:intron | 30.0% | |
| TGGTAACAAATATCGAATGT+TGG | + | tig0028364:52561-52580 | Msa1437850:intron | 30.0% | |
| CTTAAATTCCTTTAGTGTTC+AGG | + | tig0028364:52592-52611 | Msa1437850:intron | 30.0% | |
| TGAGTGAACTTTATAATACG+AGG | - | tig0028364:52716-52735 | Msa1437850:intergenic | 30.0% | |
| TTAAGTCTCTCTAGATGTTT+AGG | + | tig0028364:52886-52905 | Msa1437850:intron | 30.0% | |
| AGGAAAATATGTTCACTCAT+TGG | + | tig0028364:52954-52973 | Msa1437850:intron | 30.0% | |
| AAAGAAGGAATTAGTACAAG+TGG | - | tig0028364:52994-53013 | Msa1437850:intergenic | 30.0% | |
| TGTGTTTATATAGGCAACAA+AGG | + | tig0028364:53152-53171 | Msa1437850:intron | 30.0% | |
| ATACTAAAATTCATGGAAGC+TGG | + | tig0028364:53240-53259 | Msa1437850:CDS | 30.0% | |
| ! | CTAAGTATTGCATTGTTCAA+GGG | - | tig0028364:53288-53307 | Msa1437850:intergenic | 30.0% |
| ! | ACTAAGTATTGCATTGTTCA+AGG | - | tig0028364:53289-53308 | Msa1437850:intergenic | 30.0% |
| ! | AAATTTGGAGTCAAAAGTCA+AGG | + | tig0028364:51961-51980 | Msa1437850:CDS | 30.0% |
| GTGATATATGTACAACCATT+TGG | + | tig0028364:52114-52133 | Msa1437850:intron | 30.0% | |
| TTAGAGGAAGGAGAAATTAT+TGG | + | tig0028364:52541-52560 | Msa1437850:intron | 30.0% | |
| TGGTAACAAATATCGAATGT+TGG | + | tig0028364:52561-52580 | Msa1437850:intron | 30.0% | |
| CTTAAATTCCTTTAGTGTTC+AGG | + | tig0028364:52592-52611 | Msa1437850:intron | 30.0% | |
| TGAGTGAACTTTATAATACG+AGG | - | tig0028364:52716-52735 | Msa1437850:intergenic | 30.0% | |
| TTAAGTCTCTCTAGATGTTT+AGG | + | tig0028364:52886-52905 | Msa1437850:intron | 30.0% | |
| AGGAAAATATGTTCACTCAT+TGG | + | tig0028364:52954-52973 | Msa1437850:intron | 30.0% | |
| AAAGAAGGAATTAGTACAAG+TGG | - | tig0028364:52994-53013 | Msa1437850:intergenic | 30.0% | |
| TGTGTTTATATAGGCAACAA+AGG | + | tig0028364:53152-53171 | Msa1437850:intron | 30.0% | |
| ATACTAAAATTCATGGAAGC+TGG | + | tig0028364:53240-53259 | Msa1437850:CDS | 30.0% | |
| ! | CTAAGTATTGCATTGTTCAA+GGG | - | tig0028364:53288-53307 | Msa1437850:intergenic | 30.0% |
| ! | ACTAAGTATTGCATTGTTCA+AGG | - | tig0028364:53289-53308 | Msa1437850:intergenic | 30.0% |
| ! | AGCTTGGATACAAAGTTTTG+AGG | - | tig0028364:51880-51899 | Msa1326710:intergenic | 35.0% |
| TATCCATGTCCATGAGAATT+AGG | - | tig0028364:52041-52060 | Msa1437850:intergenic | 35.0% | |
| ATGGATATGCCTATCATGAA+TGG | + | tig0028364:52054-52073 | Msa1437850:CDS | 35.0% | |
| TGTCATCAAATTGTCCCAAA+TGG | - | tig0028364:52132-52151 | Msa1437850:intergenic | 35.0% | |
| AAATACTTATGGCCCAACAT+TGG | + | tig0028364:52414-52433 | Msa1437850:intron | 35.0% | |
| ! | AAAGTACCTTCACCAATGTT+GGG | - | tig0028364:52429-52448 | Msa1437850:intergenic | 35.0% |
| !! | AAAAGTACCTTCACCAATGT+TGG | - | tig0028364:52430-52449 | Msa1437850:intergenic | 35.0% |
| AAGTTGTGTCTTTACTTGCA+GGG | - | tig0028364:52631-52650 | Msa1437850:intergenic | 35.0% | |
| AAAGTTGTGTCTTTACTTGC+AGG | - | tig0028364:52632-52651 | Msa1437850:intergenic | 35.0% | |
| TGCAAGTAAAGACACAACTT+TGG | + | tig0028364:52631-52650 | Msa1437850:intron | 35.0% | |
| GAAGATGTAGCTTAGTTGTA+TGG | - | tig0028364:52926-52945 | Msa1437850:intergenic | 35.0% | |
| ACAACTAAGCTACATCTTCA+AGG | + | tig0028364:52927-52946 | Msa1437850:intron | 35.0% | |
| CAACTAAGCTACATCTTCAA+GGG | + | tig0028364:52928-52947 | Msa1437850:intron | 35.0% | |
| GGTATTTGTAGCACAATTGT+TGG | + | tig0028364:53189-53208 | Msa1437850:CDS | 35.0% | |
| AAAATTCATGGAAGCTGGAT+TGG | + | tig0028364:53245-53264 | Msa1437850:CDS | 35.0% | |
| GCAATACTTAGTTCCATTCT+TGG | + | tig0028364:53297-53316 | Msa1437850:CDS | 35.0% | |
| ! | AGCTTGGATACAAAGTTTTG+AGG | - | tig0028364:51880-51899 | Msa1437850:intergenic | 35.0% |
| TATCCATGTCCATGAGAATT+AGG | - | tig0028364:52041-52060 | Msa1437850:intergenic | 35.0% | |
| ATGGATATGCCTATCATGAA+TGG | + | tig0028364:52054-52073 | Msa1437850:CDS | 35.0% | |
| TGTCATCAAATTGTCCCAAA+TGG | - | tig0028364:52132-52151 | Msa1437850:intergenic | 35.0% | |
| AAATACTTATGGCCCAACAT+TGG | + | tig0028364:52414-52433 | Msa1437850:intron | 35.0% | |
| ! | AAAGTACCTTCACCAATGTT+GGG | - | tig0028364:52429-52448 | Msa1437850:intergenic | 35.0% |
| !! | AAAAGTACCTTCACCAATGT+TGG | - | tig0028364:52430-52449 | Msa1437850:intergenic | 35.0% |
| AAGTTGTGTCTTTACTTGCA+GGG | - | tig0028364:52631-52650 | Msa1437850:intergenic | 35.0% | |
| AAAGTTGTGTCTTTACTTGC+AGG | - | tig0028364:52632-52651 | Msa1437850:intergenic | 35.0% | |
| TGCAAGTAAAGACACAACTT+TGG | + | tig0028364:52631-52650 | Msa1437850:intron | 35.0% | |
| GAAGATGTAGCTTAGTTGTA+TGG | - | tig0028364:52926-52945 | Msa1437850:intergenic | 35.0% | |
| ACAACTAAGCTACATCTTCA+AGG | + | tig0028364:52927-52946 | Msa1437850:intron | 35.0% | |
| CAACTAAGCTACATCTTCAA+GGG | + | tig0028364:52928-52947 | Msa1437850:intron | 35.0% | |
| GGTATTTGTAGCACAATTGT+TGG | + | tig0028364:53189-53208 | Msa1437850:CDS | 35.0% | |
| AAAATTCATGGAAGCTGGAT+TGG | + | tig0028364:53245-53264 | Msa1437850:CDS | 35.0% | |
| GCAATACTTAGTTCCATTCT+TGG | + | tig0028364:53297-53316 | Msa1437850:CDS | 35.0% | |
| AAAAGTCAAGGTGTGGAGAA+TGG | + | tig0028364:51973-51992 | Msa1437850:CDS | 40.0% | |
| AAGAAGCAGTGGACATTCAT+TGG | + | tig0028364:51998-52017 | Msa1437850:CDS | 40.0% | |
| TGACCTAATTCTCATGGACA+TGG | + | tig0028364:52035-52054 | Msa1437850:CDS | 40.0% | |
| ACCTCAATGCCATTCATGAT+AGG | - | tig0028364:52066-52085 | Msa1437850:intergenic | 40.0% | |
| AACAAAGGAACTTCGTGCAA+TGG | + | tig0028364:53167-53186 | Msa1437850:CDS | 40.0% | |
| ACAAAGGAACTTCGTGCAAT+GGG | + | tig0028364:53168-53187 | Msa1437850:CDS | 40.0% | |
| TGGATTGATCTTGCCAAGAA+TGG | - | tig0028364:53313-53332 | Msa1437850:intergenic | 40.0% | |
| AAAAGTCAAGGTGTGGAGAA+TGG | + | tig0028364:51973-51992 | Msa1437850:CDS | 40.0% | |
| AAGAAGCAGTGGACATTCAT+TGG | + | tig0028364:51998-52017 | Msa1437850:CDS | 40.0% | |
| TGACCTAATTCTCATGGACA+TGG | + | tig0028364:52035-52054 | Msa1437850:CDS | 40.0% | |
| ACCTCAATGCCATTCATGAT+AGG | - | tig0028364:52066-52085 | Msa1437850:intergenic | 40.0% | |
| AACAAAGGAACTTCGTGCAA+TGG | + | tig0028364:53167-53186 | Msa1437850:CDS | 40.0% | |
| ACAAAGGAACTTCGTGCAAT+GGG | + | tig0028364:53168-53187 | Msa1437850:CDS | 40.0% | |
| TGGATTGATCTTGCCAAGAA+TGG | - | tig0028364:53313-53332 | Msa1437850:intergenic | 40.0% | |
| TGTATCCAAGCTAACAGCAC+TGG | + | tig0028364:51888-51907 | Msa1437850:CDS | 45.0% | |
| TGGAGTCAAAAGTCAAGGTG+TGG | + | tig0028364:51966-51985 | Msa1437850:CDS | 45.0% | |
| GGAGAATGGAAAAGAAGCAG+TGG | + | tig0028364:51987-52006 | Msa1437850:CDS | 45.0% | |
| GCCTATCATGAATGGCATTG+AGG | + | tig0028364:52062-52081 | Msa1437850:CDS | 45.0% | |
| TTATGGCCCAACATTGGTGA+AGG | + | tig0028364:52420-52439 | Msa1437850:intron | 45.0% | |
| GGATCAACCCTGAACACTAA+AGG | - | tig0028364:52603-52622 | Msa1437850:intergenic | 45.0% | |
| CTAAGCTACATCTTCAAGGG+AGG | + | tig0028364:52931-52950 | Msa1437850:intron | 45.0% | |
| TGTATCCAAGCTAACAGCAC+TGG | + | tig0028364:51888-51907 | Msa1437850:CDS | 45.0% | |
| TGGAGTCAAAAGTCAAGGTG+TGG | + | tig0028364:51966-51985 | Msa1437850:CDS | 45.0% | |
| GGAGAATGGAAAAGAAGCAG+TGG | + | tig0028364:51987-52006 | Msa1437850:CDS | 45.0% | |
| GCCTATCATGAATGGCATTG+AGG | + | tig0028364:52062-52081 | Msa1437850:CDS | 45.0% | |
| TTATGGCCCAACATTGGTGA+AGG | + | tig0028364:52420-52439 | Msa1437850:intron | 45.0% | |
| GGATCAACCCTGAACACTAA+AGG | - | tig0028364:52603-52622 | Msa1437850:intergenic | 45.0% | |
| CTAAGCTACATCTTCAAGGG+AGG | + | tig0028364:52931-52950 | Msa1437850:intron | 45.0% | |
| !! | ATATAAAAATATATAAACTT+GGG | - | tig0028364:52309-52328 | Msa1437850:intergenic | 5.0% |
| !!! | TATATATTTTTATATGATTA+TGG | + | tig0028364:52314-52333 | Msa1437850:intron | 5.0% |
| !!! | AATAAATATTTATTTTTTGA+AGG | + | tig0028364:52466-52485 | Msa1437850:intron | 5.0% |
| !! | AGAAATAAATATTTATTTAT+AGG | + | tig0028364:52493-52512 | Msa1437850:intron | 5.0% |
| !!! | TTTTTAATAGTATTAATTTT+AGG | + | tig0028364:52690-52709 | Msa1437850:intron | 5.0% |
| !! | ATATAAAAATATATAAACTT+GGG | - | tig0028364:52309-52328 | Msa1437850:intergenic | 5.0% |
| !!! | TATATATTTTTATATGATTA+TGG | + | tig0028364:52314-52333 | Msa1437850:intron | 5.0% |
| !!! | AATAAATATTTATTTTTTGA+AGG | + | tig0028364:52466-52485 | Msa1437850:intron | 5.0% |
| !! | AGAAATAAATATTTATTTAT+AGG | + | tig0028364:52493-52512 | Msa1437850:intron | 5.0% |
| !!! | TTTTTAATAGTATTAATTTT+AGG | + | tig0028364:52690-52709 | Msa1437850:intron | 5.0% |
| ! | CACAACCAGTGCTGTTAGCT+TGG | - | tig0028364:51896-51915 | Msa1437850:intergenic | 50.0% |
| !! | CAAGCTAACAGCACTGGTTG+TGG | + | tig0028364:51894-51913 | Msa1437850:CDS | 50.0% |
| CAGTGGACATTCATTGGCGT+GGG | + | tig0028364:52004-52023 | Msa1437850:CDS | 50.0% | |
| GTCTTTACTTGCAGGGTCGT+TGG | - | tig0028364:52624-52643 | Msa1437850:intergenic | 50.0% | |
| AGCTACATCTTCAAGGGAGG+AGG | + | tig0028364:52934-52953 | Msa1437850:intron | 50.0% | |
| TGGTGTGTCATCACGCTCTA+TGG | + | tig0028364:53209-53228 | Msa1437850:CDS | 50.0% | |
| ! | CACAACCAGTGCTGTTAGCT+TGG | - | tig0028364:51896-51915 | Msa1437850:intergenic | 50.0% |
| !! | CAAGCTAACAGCACTGGTTG+TGG | + | tig0028364:51894-51913 | Msa1437850:CDS | 50.0% |
| CAGTGGACATTCATTGGCGT+GGG | + | tig0028364:52004-52023 | Msa1437850:CDS | 50.0% | |
| GTCTTTACTTGCAGGGTCGT+TGG | - | tig0028364:52624-52643 | Msa1437850:intergenic | 50.0% | |
| AGCTACATCTTCAAGGGAGG+AGG | + | tig0028364:52934-52953 | Msa1437850:intron | 50.0% | |
| TGGTGTGTCATCACGCTCTA+TGG | + | tig0028364:53209-53228 | Msa1437850:CDS | 50.0% | |
| GCAGTGGACATTCATTGGCG+TGG | + | tig0028364:52003-52022 | Msa1437850:CDS | 55.0% | |
| GCAGTGGACATTCATTGGCG+TGG | + | tig0028364:52003-52022 | Msa1437850:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028364 | gene | 51868 | 53341 | 51868 | ID=Msa1437850;Name=Msa1437850 |
| tig0028364 | mRNA | 51868 | 53341 | 51868 | ID=Msa1437850-mRNA-1;Parent=Msa1437850;Name=Msa1437850-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|130 |
| tig0028364 | exon | 51868 | 52083 | 51868 | ID=Msa1437850-mRNA-1:exon:10909;Parent=Msa1437850-mRNA-1 |
| tig0028364 | exon | 53165 | 53341 | 53165 | ID=Msa1437850-mRNA-1:exon:10910;Parent=Msa1437850-mRNA-1 |
| tig0028364 | CDS | 51868 | 52083 | 51868 | ID=Msa1437850-mRNA-1:cds;Parent=Msa1437850-mRNA-1 |
| tig0028364 | CDS | 53165 | 53341 | 53165 | ID=Msa1437850-mRNA-1:cds;Parent=Msa1437850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
