Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439130 | XP_013470179.1 | 95.671 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 3.81e-163 | 460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439130 | sp|Q9M886|LBD41_ARATH | 40.529 | 227 | 122 | 5 | 1 | 225 | 1 | 216 | 2.75e-52 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439130 | G7ZZB8 | 95.671 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 1.82e-163 | 460 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1439130 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439130 | MtrunA17_Chr6g0469271 | 93.939 | 231 | 14 | 0 | 1 | 231 | 1 | 231 | 1.40e-164 | 453 |
| Msa1439130 | MtrunA17_Chr6g0470631 | 90.476 | 231 | 22 | 0 | 1 | 231 | 1 | 231 | 1.86e-158 | 438 |
| Msa1439130 | MtrunA17_Chr6g0470651 | 88.745 | 231 | 26 | 0 | 1 | 231 | 1 | 231 | 2.34e-156 | 432 |
| Msa1439130 | MtrunA17_Chr1g0209841 | 91.342 | 231 | 10 | 1 | 1 | 231 | 1 | 221 | 2.44e-156 | 432 |
| Msa1439130 | MtrunA17_Chr6g0457431 | 55.422 | 166 | 56 | 6 | 1 | 160 | 1 | 154 | 4.58e-60 | 186 |
| Msa1439130 | MtrunA17_Chr7g0215281 | 44.053 | 227 | 109 | 7 | 1 | 223 | 1 | 213 | 8.42e-56 | 180 |
| Msa1439130 | MtrunA17_Chr4g0053911 | 56.303 | 119 | 48 | 2 | 3 | 119 | 1 | 117 | 1.65e-46 | 154 |
| Msa1439130 | MtrunA17_Chr5g0401401 | 44.970 | 169 | 82 | 5 | 3 | 165 | 1 | 164 | 5.49e-45 | 150 |
| Msa1439130 | MtrunA17_Chr1g0207471 | 44.882 | 127 | 63 | 2 | 3 | 124 | 1 | 125 | 7.99e-36 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439130 | AT3G02550.1 | 40.529 | 227 | 122 | 5 | 1 | 225 | 1 | 216 | 2.80e-53 | 172 |
| Msa1439130 | AT1G68510.1 | 55.102 | 147 | 54 | 3 | 1 | 145 | 1 | 137 | 3.07e-53 | 171 |
| Msa1439130 | AT1G67100.1 | 54.861 | 144 | 57 | 3 | 1 | 144 | 1 | 136 | 5.96e-50 | 163 |
| Msa1439130 | AT3G49940.1 | 53.659 | 123 | 55 | 1 | 3 | 125 | 1 | 121 | 1.41e-45 | 152 |
| Msa1439130 | AT5G67420.2 | 55.963 | 109 | 46 | 1 | 3 | 111 | 1 | 107 | 1.14e-43 | 147 |
| Msa1439130 | AT5G67420.1 | 55.963 | 109 | 46 | 1 | 3 | 111 | 1 | 107 | 1.14e-43 | 147 |
| Msa1439130 | AT4G37540.1 | 57.798 | 109 | 44 | 1 | 3 | 111 | 1 | 107 | 1.50e-43 | 147 |
Find 62 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCATGCCCTTGGGATTC+AGG | 0.157225 | tig0028713:+16898 | None:intergenic |
| ATGGGGCGCTTGGCTTATTT+TGG | 0.165756 | tig0028713:-16419 | Msa1439130:CDS |
| AAGAATACCAACATGGAAAT+TGG | 0.166066 | tig0028713:-16120 | Msa1439130:CDS |
| ACCGGTTCGGCCATAAAATT+TGG | 0.172606 | tig0028713:+16864 | None:intergenic |
| ATGGCGTATATCATAGGTTT+TGG | 0.254539 | tig0028713:+16266 | None:intergenic |
| TGCTGAGAATCAAGTGAATT+TGG | 0.279066 | tig0028713:-16055 | Msa1439130:CDS |
| CCATGTTGGTATTCTTCAAA+AGG | 0.367139 | tig0028713:+16127 | None:intergenic |
| AGAATACCAACATGGAAATT+GGG | 0.374565 | tig0028713:-16119 | Msa1439130:CDS |
| TGCCACATGGCGTATATCAT+AGG | 0.386203 | tig0028713:+16260 | None:intergenic |
| CTTTGATTGCCAATCAACTA+AGG | 0.392207 | tig0028713:-16019 | Msa1439130:CDS |
| CATAAAATTTGGCAAGGAAG+AGG | 0.404166 | tig0028713:+16875 | None:intergenic |
| GACTGAACCAACTCGTGGCT+TGG | 0.415502 | tig0028713:+16173 | None:intergenic |
| ACTGAACCAACTCGTGGCTT+GGG | 0.424285 | tig0028713:+16174 | None:intergenic |
| GTGAATTTGGAACTCACTCT+TGG | 0.424885 | tig0028713:-16042 | Msa1439130:CDS |
| GGAAGAGGGTGGCATGCCCT+TGG | 0.443110 | tig0028713:+16890 | None:intergenic |
| GCAACTGATCCACTCAAGGC+AGG | 0.443950 | tig0028713:+16921 | None:intergenic |
| TGGCATGCCCTTGGGATTCA+GGG | 0.444879 | tig0028713:+16899 | None:intergenic |
| AAAACTCAATTCAAAAGAGC+TGG | 0.446487 | tig0028713:-16210 | Msa1439130:CDS |
| GCAGTTGAAGCTGTGCTGAC+TGG | 0.456964 | tig0028713:-16369 | Msa1439130:CDS |
| AGATTGGTGAATCCCACATA+TGG | 0.458590 | tig0028713:-16438 | Msa1439130:CDS |
| ATTGATGGGCAAACATCATC+AGG | 0.461143 | tig0028713:-16318 | Msa1439130:CDS |
| TAAGCCAAGCGCCCCATATG+TGG | 0.471835 | tig0028713:+16425 | None:intergenic |
| CATGTTGGTATTCTTCAAAA+GGG | 0.477135 | tig0028713:+16128 | None:intergenic |
| GAAGAGGGTGGCATGCCCTT+GGG | 0.479104 | tig0028713:+16891 | None:intergenic |
| GGAGATTGAGCAAACCGGTT+CGG | 0.494518 | tig0028713:+16851 | None:intergenic |
| AATCATCACTACAACCTTTG+CGG | 0.504650 | tig0028713:+16956 | None:intergenic |
| GATTGGTGAATCCCACATAT+GGG | 0.508471 | tig0028713:-16437 | Msa1439130:CDS |
| GATATACGCCATGTGGCAAA+AGG | 0.516720 | tig0028713:-16255 | Msa1439130:CDS |
| AATCCCACATATGGGGCGCT+TGG | 0.518707 | tig0028713:-16429 | Msa1439130:CDS |
| GGTGAGGAGATTGAGCAAAC+CGG | 0.524508 | tig0028713:+16846 | None:intergenic |
| TCATCAAGCCCTGCCTTGAG+TGG | 0.538225 | tig0028713:-16930 | Msa1439130:CDS |
| GTACCAATGTGGACATCAAA+GGG | 0.546635 | tig0028713:-16233 | Msa1439130:CDS |
| TTTCCCTTTGATGTCCACAT+TGG | 0.551024 | tig0028713:+16230 | None:intergenic |
| GGTACCAATGTGGACATCAA+AGG | 0.551224 | tig0028713:-16234 | Msa1439130:CDS |
| GTACGAGGCAGCTGGTAGAT+TGG | 0.560594 | tig0028713:-16454 | Msa1439130:CDS |
| GAATACCAACATGGAAATTG+GGG | 0.561319 | tig0028713:-16118 | Msa1439130:CDS |
| CTGAAGCCCAAGCCACGAGT+TGG | 0.576033 | tig0028713:-16180 | Msa1439130:CDS |
| AGTCTCCCCAATTTCCATGT+TGG | 0.576332 | tig0028713:+16113 | None:intergenic |
| ATAAAATTTGGCAAGGAAGA+GGG | 0.578936 | tig0028713:+16876 | None:intergenic |
| TTCGGCCATAAAATTTGGCA+AGG | 0.579687 | tig0028713:+16869 | None:intergenic |
| TAATGAAGTTGAGTTGCAAT+GGG | 0.583194 | tig0028713:-16990 | Msa1439130:CDS |
| TTTGATTGCCAATCAACTAA+GGG | 0.586746 | tig0028713:-16018 | Msa1439130:CDS |
| AAGCCAAGCGCCCCATATGT+GGG | 0.589682 | tig0028713:+16426 | None:intergenic |
| AAACTCAATTCAAAAGAGCT+GGG | 0.590181 | tig0028713:-16209 | Msa1439130:CDS |
| CAACTGATCCACTCAAGGCA+GGG | 0.595554 | tig0028713:+16922 | None:intergenic |
| ATCAGTTGCCCTGAATCCCA+AGG | 0.599742 | tig0028713:-16907 | Msa1439130:CDS |
| ATAATGAAGTTGAGTTGCAA+TGG | 0.608858 | tig0028713:-16991 | Msa1439130:CDS |
| TCATTGTTGTACGAGGCAGC+TGG | 0.614180 | tig0028713:-16462 | Msa1439130:CDS |
| ACGAGTTGGTTCAGTCGACT+CGG | 0.622355 | tig0028713:-16166 | Msa1439130:CDS |
| CAGGGCAACTGATCCACTCA+AGG | 0.625744 | tig0028713:+16917 | None:intergenic |
| GGGTGTCGTGTGCTCCGCAA+AGG | 0.627575 | tig0028713:-16970 | Msa1439130:CDS |
| ATTGGTGAATCCCACATATG+GGG | 0.640018 | tig0028713:-16436 | Msa1439130:CDS |
| TTTGATTGGTAGCATTGGTG+AGG | 0.643249 | tig0028713:+16830 | None:intergenic |
| AAATTGGGGAGACTTCATCA+AGG | 0.644743 | tig0028713:-16104 | Msa1439130:CDS |
| AATTGGGGAGACTTCATCAA+GGG | 0.644822 | tig0028713:-16103 | Msa1439130:CDS |
| AATCAAAATCATAATCCACC+AGG | 0.664735 | tig0028713:-16814 | Msa1439130:intron |
| TCAGTTGCCCTGAATCCCAA+GGG | 0.669183 | tig0028713:-16906 | Msa1439130:CDS |
| GAGTCGACTGAACCAACTCG+TGG | 0.679210 | tig0028713:+16168 | None:intergenic |
| AACCTATGATATACGCCATG+TGG | 0.679816 | tig0028713:-16262 | Msa1439130:CDS |
| AAATTTGGCAAGGAAGAGGG+TGG | 0.680062 | tig0028713:+16879 | None:intergenic |
| GTTTAAATCATTGTTGTACG+AGG | 0.684324 | tig0028713:-16469 | Msa1439130:CDS |
| TGTGGCAAAAGGTACCAATG+TGG | 0.731996 | tig0028713:-16244 | Msa1439130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTAATTTATGATCCATAA+TGG | + | tig0028713:16382-16401 | None:intergenic | 20.0% |
| !!! | GAATCTATGAAAAGATTTTA+TGG | + | tig0028713:16423-16442 | None:intergenic | 20.0% |
| !!! | GTTTAATTTATGATCCATAA+TGG | + | tig0028713:16382-16401 | None:intergenic | 20.0% |
| !!! | GAATCTATGAAAAGATTTTA+TGG | + | tig0028713:16423-16442 | None:intergenic | 20.0% |
| ! | CGTAATTCATGAATAATTGA+TGG | - | tig0028713:16225-16244 | Msa1439130:CDS | 25.0% |
| ! | ATTCATGAATAATTGATGGA+TGG | - | tig0028713:16229-16248 | Msa1439130:CDS | 25.0% |
| !! | ACAGTTTTACAATGATTGAT+GGG | - | tig0028713:16652-16671 | Msa1439130:intron | 25.0% |
| ! | CGTAATTCATGAATAATTGA+TGG | - | tig0028713:16225-16244 | Msa1439130:CDS | 25.0% |
| ! | ATTCATGAATAATTGATGGA+TGG | - | tig0028713:16229-16248 | Msa1439130:CDS | 25.0% |
| !! | ACAGTTTTACAATGATTGAT+GGG | - | tig0028713:16652-16671 | Msa1439130:intron | 25.0% |
| ATAAAATTTGGCAAGGAAGA+GGG | + | tig0028713:16111-16130 | None:intergenic | 30.0% | |
| !!! | ATGATTTTGATTGGTAGCAT+TGG | + | tig0028713:16162-16181 | None:intergenic | 30.0% |
| !!! | TGGTGGATTATGATTTTGAT+TGG | + | tig0028713:16171-16190 | None:intergenic | 30.0% |
| AATCAAAATCATAATCCACC+AGG | - | tig0028713:16170-16189 | Msa1439130:CDS | 30.0% | |
| ATAAATGATTCCATCCATCA+TGG | - | tig0028713:16260-16279 | Msa1439130:CDS | 30.0% | |
| ! | CAATTTAAAACCATGATGGA+TGG | + | tig0028713:16273-16292 | None:intergenic | 30.0% |
| !!! | TCCATCATGGTTTTAAATTG+TGG | - | tig0028713:16273-16292 | Msa1439130:CDS | 30.0% |
| ! | ACCACAATTTAAAACCATGA+TGG | + | tig0028713:16277-16296 | None:intergenic | 30.0% |
| TAAAAAAGTTTGTCCTGTAG+CGG | + | tig0028713:16314-16333 | None:intergenic | 30.0% | |
| TATGATCCATAATGGTATTG+CGG | + | tig0028713:16374-16393 | None:intergenic | 30.0% | |
| ATGGAACATAAATGAGACAT+AGG | + | tig0028713:16404-16423 | None:intergenic | 30.0% | |
| GTTTAAATCATTGTTGTACG+AGG | - | tig0028713:16515-16534 | Msa1439130:intron | 30.0% | |
| ! | GACAGTTTTACAATGATTGA+TGG | - | tig0028713:16651-16670 | Msa1439130:intron | 30.0% |
| AAAACTCAATTCAAAAGAGC+TGG | - | tig0028713:16774-16793 | Msa1439130:intron | 30.0% | |
| AAACTCAATTCAAAAGAGCT+GGG | - | tig0028713:16775-16794 | Msa1439130:intron | 30.0% | |
| CATGTTGGTATTCTTCAAAA+GGG | + | tig0028713:16859-16878 | None:intergenic | 30.0% | |
| AAGAATACCAACATGGAAAT+TGG | - | tig0028713:16864-16883 | Msa1439130:CDS | 30.0% | |
| AGAATACCAACATGGAAATT+GGG | - | tig0028713:16865-16884 | Msa1439130:CDS | 30.0% | |
| TTTGATTGCCAATCAACTAA+GGG | - | tig0028713:16966-16985 | Msa1439130:CDS | 30.0% | |
| ATAAAATTTGGCAAGGAAGA+GGG | + | tig0028713:16111-16130 | None:intergenic | 30.0% | |
| !!! | ATGATTTTGATTGGTAGCAT+TGG | + | tig0028713:16162-16181 | None:intergenic | 30.0% |
| !!! | TGGTGGATTATGATTTTGAT+TGG | + | tig0028713:16171-16190 | None:intergenic | 30.0% |
| AATCAAAATCATAATCCACC+AGG | - | tig0028713:16170-16189 | Msa1439130:CDS | 30.0% | |
| ATAAATGATTCCATCCATCA+TGG | - | tig0028713:16260-16279 | Msa1439130:CDS | 30.0% | |
| ! | CAATTTAAAACCATGATGGA+TGG | + | tig0028713:16273-16292 | None:intergenic | 30.0% |
| !!! | TCCATCATGGTTTTAAATTG+TGG | - | tig0028713:16273-16292 | Msa1439130:CDS | 30.0% |
| ! | ACCACAATTTAAAACCATGA+TGG | + | tig0028713:16277-16296 | None:intergenic | 30.0% |
| TAAAAAAGTTTGTCCTGTAG+CGG | + | tig0028713:16314-16333 | None:intergenic | 30.0% | |
| TATGATCCATAATGGTATTG+CGG | + | tig0028713:16374-16393 | None:intergenic | 30.0% | |
| ATGGAACATAAATGAGACAT+AGG | + | tig0028713:16404-16423 | None:intergenic | 30.0% | |
| GTTTAAATCATTGTTGTACG+AGG | - | tig0028713:16515-16534 | Msa1439130:intron | 30.0% | |
| ! | GACAGTTTTACAATGATTGA+TGG | - | tig0028713:16651-16670 | Msa1439130:intron | 30.0% |
| AAAACTCAATTCAAAAGAGC+TGG | - | tig0028713:16774-16793 | Msa1439130:intron | 30.0% | |
| AAACTCAATTCAAAAGAGCT+GGG | - | tig0028713:16775-16794 | Msa1439130:intron | 30.0% | |
| CATGTTGGTATTCTTCAAAA+GGG | + | tig0028713:16859-16878 | None:intergenic | 30.0% | |
| AAGAATACCAACATGGAAAT+TGG | - | tig0028713:16864-16883 | Msa1439130:CDS | 30.0% | |
| AGAATACCAACATGGAAATT+GGG | - | tig0028713:16865-16884 | Msa1439130:CDS | 30.0% | |
| TTTGATTGCCAATCAACTAA+GGG | - | tig0028713:16966-16985 | Msa1439130:CDS | 30.0% | |
| AATCATCACTACAACCTTTG+CGG | + | tig0028713:16031-16050 | None:intergenic | 35.0% | |
| CATAAAATTTGGCAAGGAAG+AGG | + | tig0028713:16112-16131 | None:intergenic | 35.0% | |
| ! | CTCTTCCTTGCCAAATTTTA+TGG | - | tig0028713:16110-16129 | Msa1439130:CDS | 35.0% |
| ! | TGGCGTATATCATAGGTTTT+GGG | + | tig0028713:16720-16739 | None:intergenic | 35.0% |
| ! | ATGGCGTATATCATAGGTTT+TGG | + | tig0028713:16721-16740 | None:intergenic | 35.0% |
| CCATGTTGGTATTCTTCAAA+AGG | + | tig0028713:16860-16879 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATACCAACA+TGG | - | tig0028713:16857-16876 | Msa1439130:CDS | 35.0% |
| GAATACCAACATGGAAATTG+GGG | - | tig0028713:16866-16885 | Msa1439130:CDS | 35.0% | |
| TGCTGAGAATCAAGTGAATT+TGG | - | tig0028713:16929-16948 | Msa1439130:CDS | 35.0% | |
| CTTTGATTGCCAATCAACTA+AGG | - | tig0028713:16965-16984 | Msa1439130:CDS | 35.0% | |
| ! | TTTTCTTGCCCTTAGTTGAT+TGG | + | tig0028713:16977-16996 | None:intergenic | 35.0% |
| AATCATCACTACAACCTTTG+CGG | + | tig0028713:16031-16050 | None:intergenic | 35.0% | |
| CATAAAATTTGGCAAGGAAG+AGG | + | tig0028713:16112-16131 | None:intergenic | 35.0% | |
| ! | CTCTTCCTTGCCAAATTTTA+TGG | - | tig0028713:16110-16129 | Msa1439130:CDS | 35.0% |
| ! | TGGCGTATATCATAGGTTTT+GGG | + | tig0028713:16720-16739 | None:intergenic | 35.0% |
| ! | ATGGCGTATATCATAGGTTT+TGG | + | tig0028713:16721-16740 | None:intergenic | 35.0% |
| CCATGTTGGTATTCTTCAAA+AGG | + | tig0028713:16860-16879 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATACCAACA+TGG | - | tig0028713:16857-16876 | Msa1439130:CDS | 35.0% |
| GAATACCAACATGGAAATTG+GGG | - | tig0028713:16866-16885 | Msa1439130:CDS | 35.0% | |
| TGCTGAGAATCAAGTGAATT+TGG | - | tig0028713:16929-16948 | Msa1439130:CDS | 35.0% | |
| CTTTGATTGCCAATCAACTA+AGG | - | tig0028713:16965-16984 | Msa1439130:CDS | 35.0% | |
| ! | TTTTCTTGCCCTTAGTTGAT+TGG | + | tig0028713:16977-16996 | None:intergenic | 35.0% |
| TTCGGCCATAAAATTTGGCA+AGG | + | tig0028713:16118-16137 | None:intergenic | 40.0% | |
| !! | TTTGATTGGTAGCATTGGTG+AGG | + | tig0028713:16157-16176 | None:intergenic | 40.0% |
| AGATTGGTGAATCCCACATA+TGG | - | tig0028713:16546-16565 | Msa1439130:intron | 40.0% | |
| GATTGGTGAATCCCACATAT+GGG | - | tig0028713:16547-16566 | Msa1439130:intron | 40.0% | |
| ATTGGTGAATCCCACATATG+GGG | - | tig0028713:16548-16567 | Msa1439130:intron | 40.0% | |
| !!! | GCTTATTTTGGACAGCGAAT+TGG | - | tig0028713:16577-16596 | Msa1439130:intron | 40.0% |
| ! | ATTGATGGGCAAACATCATC+AGG | - | tig0028713:16666-16685 | Msa1439130:intron | 40.0% |
| ! | GGCGTATATCATAGGTTTTG+GGG | + | tig0028713:16719-16738 | None:intergenic | 40.0% |
| AACCTATGATATACGCCATG+TGG | - | tig0028713:16722-16741 | Msa1439130:intron | 40.0% | |
| GTACCAATGTGGACATCAAA+GGG | - | tig0028713:16751-16770 | Msa1439130:intron | 40.0% | |
| TTTCCCTTTGATGTCCACAT+TGG | + | tig0028713:16757-16776 | None:intergenic | 40.0% | |
| AAATTGGGGAGACTTCATCA+AGG | - | tig0028713:16880-16899 | Msa1439130:CDS | 40.0% | |
| AATTGGGGAGACTTCATCAA+GGG | - | tig0028713:16881-16900 | Msa1439130:CDS | 40.0% | |
| ! | GTGAATTTGGAACTCACTCT+TGG | - | tig0028713:16942-16961 | Msa1439130:CDS | 40.0% |
| TTCGGCCATAAAATTTGGCA+AGG | + | tig0028713:16118-16137 | None:intergenic | 40.0% | |
| !! | TTTGATTGGTAGCATTGGTG+AGG | + | tig0028713:16157-16176 | None:intergenic | 40.0% |
| AGATTGGTGAATCCCACATA+TGG | - | tig0028713:16546-16565 | Msa1439130:intron | 40.0% | |
| GATTGGTGAATCCCACATAT+GGG | - | tig0028713:16547-16566 | Msa1439130:intron | 40.0% | |
| ATTGGTGAATCCCACATATG+GGG | - | tig0028713:16548-16567 | Msa1439130:intron | 40.0% | |
| !!! | GCTTATTTTGGACAGCGAAT+TGG | - | tig0028713:16577-16596 | Msa1439130:intron | 40.0% |
| ! | ATTGATGGGCAAACATCATC+AGG | - | tig0028713:16666-16685 | Msa1439130:intron | 40.0% |
| ! | GGCGTATATCATAGGTTTTG+GGG | + | tig0028713:16719-16738 | None:intergenic | 40.0% |
| AACCTATGATATACGCCATG+TGG | - | tig0028713:16722-16741 | Msa1439130:intron | 40.0% | |
| GTACCAATGTGGACATCAAA+GGG | - | tig0028713:16751-16770 | Msa1439130:intron | 40.0% | |
| TTTCCCTTTGATGTCCACAT+TGG | + | tig0028713:16757-16776 | None:intergenic | 40.0% | |
| AAATTGGGGAGACTTCATCA+AGG | - | tig0028713:16880-16899 | Msa1439130:CDS | 40.0% | |
| AATTGGGGAGACTTCATCAA+GGG | - | tig0028713:16881-16900 | Msa1439130:CDS | 40.0% | |
| ! | GTGAATTTGGAACTCACTCT+TGG | - | tig0028713:16942-16961 | Msa1439130:CDS | 40.0% |
| AAATTTGGCAAGGAAGAGGG+TGG | + | tig0028713:16108-16127 | None:intergenic | 45.0% | |
| ! | GCCAAATTTTATGGCCGAAC+CGG | - | tig0028713:16119-16138 | Msa1439130:CDS | 45.0% |
| !! | ACCGGTTCGGCCATAAAATT+TGG | + | tig0028713:16123-16142 | None:intergenic | 45.0% |
| AGTGAACTTAGCTAGCTACC+TGG | + | tig0028713:16191-16210 | None:intergenic | 45.0% | |
| GTGACCAACTTAAGTCGATG+CGG | - | tig0028713:16348-16367 | Msa1439130:CDS | 45.0% | |
| TGCCACATGGCGTATATCAT+AGG | + | tig0028713:16727-16746 | None:intergenic | 45.0% | |
| GATATACGCCATGTGGCAAA+AGG | - | tig0028713:16729-16748 | Msa1439130:intron | 45.0% | |
| ! | CATTGGTACCTTTTGCCACA+TGG | + | tig0028713:16740-16759 | None:intergenic | 45.0% |
| !! | TGTGGCAAAAGGTACCAATG+TGG | - | tig0028713:16740-16759 | Msa1439130:intron | 45.0% |
| GGTACCAATGTGGACATCAA+AGG | - | tig0028713:16750-16769 | Msa1439130:intron | 45.0% | |
| AGTCTCCCCAATTTCCATGT+TGG | + | tig0028713:16874-16893 | None:intergenic | 45.0% | |
| AAATTTGGCAAGGAAGAGGG+TGG | + | tig0028713:16108-16127 | None:intergenic | 45.0% | |
| ! | GCCAAATTTTATGGCCGAAC+CGG | - | tig0028713:16119-16138 | Msa1439130:CDS | 45.0% |
| !! | ACCGGTTCGGCCATAAAATT+TGG | + | tig0028713:16123-16142 | None:intergenic | 45.0% |
| AGTGAACTTAGCTAGCTACC+TGG | + | tig0028713:16191-16210 | None:intergenic | 45.0% | |
| GTGACCAACTTAAGTCGATG+CGG | - | tig0028713:16348-16367 | Msa1439130:CDS | 45.0% | |
| TGCCACATGGCGTATATCAT+AGG | + | tig0028713:16727-16746 | None:intergenic | 45.0% | |
| GATATACGCCATGTGGCAAA+AGG | - | tig0028713:16729-16748 | Msa1439130:intron | 45.0% | |
| ! | CATTGGTACCTTTTGCCACA+TGG | + | tig0028713:16740-16759 | None:intergenic | 45.0% |
| !! | TGTGGCAAAAGGTACCAATG+TGG | - | tig0028713:16740-16759 | Msa1439130:intron | 45.0% |
| GGTACCAATGTGGACATCAA+AGG | - | tig0028713:16750-16769 | Msa1439130:intron | 45.0% | |
| AGTCTCCCCAATTTCCATGT+TGG | + | tig0028713:16874-16893 | None:intergenic | 45.0% | |
| CAACTGATCCACTCAAGGCA+GGG | + | tig0028713:16065-16084 | None:intergenic | 50.0% | |
| ATCAGTTGCCCTGAATCCCA+AGG | - | tig0028713:16077-16096 | Msa1439130:CDS | 50.0% | |
| TCAGTTGCCCTGAATCCCAA+GGG | - | tig0028713:16078-16097 | Msa1439130:CDS | 50.0% | |
| GGAGATTGAGCAAACCGGTT+CGG | + | tig0028713:16136-16155 | None:intergenic | 50.0% | |
| GGTGAGGAGATTGAGCAAAC+CGG | + | tig0028713:16141-16160 | None:intergenic | 50.0% | |
| GAACTTAGCTAGCTACCTGG+TGG | + | tig0028713:16188-16207 | None:intergenic | 50.0% | |
| ATGCGGCCGCAATACCATTA+TGG | - | tig0028713:16365-16384 | Msa1439130:CDS | 50.0% | |
| TCATTGTTGTACGAGGCAGC+TGG | - | tig0028713:16522-16541 | Msa1439130:intron | 50.0% | |
| !! | ATGGGGCGCTTGGCTTATTT+TGG | - | tig0028713:16565-16584 | Msa1439130:intron | 50.0% |
| ACTGAACCAACTCGTGGCTT+GGG | + | tig0028713:16813-16832 | None:intergenic | 50.0% | |
| !! | ACGAGTTGGTTCAGTCGACT+CGG | - | tig0028713:16818-16837 | Msa1439130:CDS | 50.0% |
| CAACTGATCCACTCAAGGCA+GGG | + | tig0028713:16065-16084 | None:intergenic | 50.0% | |
| ATCAGTTGCCCTGAATCCCA+AGG | - | tig0028713:16077-16096 | Msa1439130:CDS | 50.0% | |
| TCAGTTGCCCTGAATCCCAA+GGG | - | tig0028713:16078-16097 | Msa1439130:CDS | 50.0% | |
| GGAGATTGAGCAAACCGGTT+CGG | + | tig0028713:16136-16155 | None:intergenic | 50.0% | |
| GGTGAGGAGATTGAGCAAAC+CGG | + | tig0028713:16141-16160 | None:intergenic | 50.0% | |
| GAACTTAGCTAGCTACCTGG+TGG | + | tig0028713:16188-16207 | None:intergenic | 50.0% | |
| ATGCGGCCGCAATACCATTA+TGG | - | tig0028713:16365-16384 | Msa1439130:CDS | 50.0% | |
| TCATTGTTGTACGAGGCAGC+TGG | - | tig0028713:16522-16541 | Msa1439130:intron | 50.0% | |
| !! | ATGGGGCGCTTGGCTTATTT+TGG | - | tig0028713:16565-16584 | Msa1439130:intron | 50.0% |
| ACTGAACCAACTCGTGGCTT+GGG | + | tig0028713:16813-16832 | None:intergenic | 50.0% | |
| !! | ACGAGTTGGTTCAGTCGACT+CGG | - | tig0028713:16818-16837 | Msa1439130:CDS | 50.0% |
| TCATCAAGCCCTGCCTTGAG+TGG | - | tig0028713:16054-16073 | Msa1439130:CDS | 55.0% | |
| GCAACTGATCCACTCAAGGC+AGG | + | tig0028713:16066-16085 | None:intergenic | 55.0% | |
| CAGGGCAACTGATCCACTCA+AGG | + | tig0028713:16070-16089 | None:intergenic | 55.0% | |
| TGGCATGCCCTTGGGATTCA+GGG | + | tig0028713:16088-16107 | None:intergenic | 55.0% | |
| GATGTTGCAGTTGCCGCTAC+AGG | - | tig0028713:16298-16317 | Msa1439130:CDS | 55.0% | |
| GTACGAGGCAGCTGGTAGAT+TGG | - | tig0028713:16530-16549 | Msa1439130:intron | 55.0% | |
| ! | AATCCCACATATGGGGCGCT+TGG | - | tig0028713:16555-16574 | Msa1439130:intron | 55.0% |
| AAGCCAAGCGCCCCATATGT+GGG | + | tig0028713:16561-16580 | None:intergenic | 55.0% | |
| TAAGCCAAGCGCCCCATATG+TGG | + | tig0028713:16562-16581 | None:intergenic | 55.0% | |
| ! | GCAGTTGAAGCTGTGCTGAC+TGG | - | tig0028713:16615-16634 | Msa1439130:intron | 55.0% |
| GACTGAACCAACTCGTGGCT+TGG | + | tig0028713:16814-16833 | None:intergenic | 55.0% | |
| GAGTCGACTGAACCAACTCG+TGG | + | tig0028713:16819-16838 | None:intergenic | 55.0% | |
| TCATCAAGCCCTGCCTTGAG+TGG | - | tig0028713:16054-16073 | Msa1439130:CDS | 55.0% | |
| GCAACTGATCCACTCAAGGC+AGG | + | tig0028713:16066-16085 | None:intergenic | 55.0% | |
| CAGGGCAACTGATCCACTCA+AGG | + | tig0028713:16070-16089 | None:intergenic | 55.0% | |
| TGGCATGCCCTTGGGATTCA+GGG | + | tig0028713:16088-16107 | None:intergenic | 55.0% | |
| GATGTTGCAGTTGCCGCTAC+AGG | - | tig0028713:16298-16317 | Msa1439130:CDS | 55.0% | |
| GTACGAGGCAGCTGGTAGAT+TGG | - | tig0028713:16530-16549 | Msa1439130:intron | 55.0% | |
| ! | AATCCCACATATGGGGCGCT+TGG | - | tig0028713:16555-16574 | Msa1439130:intron | 55.0% |
| AAGCCAAGCGCCCCATATGT+GGG | + | tig0028713:16561-16580 | None:intergenic | 55.0% | |
| TAAGCCAAGCGCCCCATATG+TGG | + | tig0028713:16562-16581 | None:intergenic | 55.0% | |
| ! | GCAGTTGAAGCTGTGCTGAC+TGG | - | tig0028713:16615-16634 | Msa1439130:intron | 55.0% |
| GACTGAACCAACTCGTGGCT+TGG | + | tig0028713:16814-16833 | None:intergenic | 55.0% | |
| GAGTCGACTGAACCAACTCG+TGG | + | tig0028713:16819-16838 | None:intergenic | 55.0% | |
| GTGGCATGCCCTTGGGATTC+AGG | + | tig0028713:16089-16108 | None:intergenic | 60.0% | |
| GAAGAGGGTGGCATGCCCTT+GGG | + | tig0028713:16096-16115 | None:intergenic | 60.0% | |
| !! | GCGGCCGCATCGACTTAAGT+TGG | + | tig0028713:16355-16374 | None:intergenic | 60.0% |
| CTGAAGCCCAAGCCACGAGT+TGG | - | tig0028713:16804-16823 | Msa1439130:intron | 60.0% | |
| GTGGCATGCCCTTGGGATTC+AGG | + | tig0028713:16089-16108 | None:intergenic | 60.0% | |
| GAAGAGGGTGGCATGCCCTT+GGG | + | tig0028713:16096-16115 | None:intergenic | 60.0% | |
| !! | GCGGCCGCATCGACTTAAGT+TGG | + | tig0028713:16355-16374 | None:intergenic | 60.0% |
| CTGAAGCCCAAGCCACGAGT+TGG | - | tig0028713:16804-16823 | Msa1439130:intron | 60.0% | |
| ! | GGGTGTCGTGTGCTCCGCAA+AGG | - | tig0028713:16014-16033 | Msa1439130:CDS | 65.0% |
| GGAAGAGGGTGGCATGCCCT+TGG | + | tig0028713:16097-16116 | None:intergenic | 65.0% | |
| ! | GGGTGTCGTGTGCTCCGCAA+AGG | - | tig0028713:16014-16033 | Msa1439130:CDS | 65.0% |
| GGAAGAGGGTGGCATGCCCT+TGG | + | tig0028713:16097-16116 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028713 | gene | 15996 | 17010 | 15996 | ID=Msa1439130;Name=Msa1439130 |
| tig0028713 | mRNA | 15996 | 17010 | 15996 | ID=Msa1439130-mRNA-1;Parent=Msa1439130;Name=Msa1439130-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|231 |
| tig0028713 | exon | 16815 | 17010 | 16815 | ID=Msa1439130-mRNA-1:exon:11610;Parent=Msa1439130-mRNA-1 |
| tig0028713 | exon | 15996 | 16495 | 15996 | ID=Msa1439130-mRNA-1:exon:11609;Parent=Msa1439130-mRNA-1 |
| tig0028713 | CDS | 16815 | 17010 | 16815 | ID=Msa1439130-mRNA-1:cds;Parent=Msa1439130-mRNA-1 |
| tig0028713 | CDS | 15996 | 16495 | 15996 | ID=Msa1439130-mRNA-1:cds;Parent=Msa1439130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
