Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439900 | XP_039687124.1 | 79.740 | 385 | 46 | 6 | 40 | 411 | 4 | 369 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439900 | sp|Q6NQK2|NAC8_ARATH | 46.341 | 451 | 180 | 14 | 11 | 411 | 5 | 443 | 1.48e-116 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439900 | A0A896WDF1 | 73.086 | 405 | 91 | 7 | 10 | 411 | 1 | 390 | 0.0 | 597 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1439900 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439900 | MtrunA17_Chr1g0198751 | 61.996 | 471 | 108 | 5 | 10 | 411 | 6 | 474 | 0.0 | 568 |
| Msa1439900 | MtrunA17_Chr1g0198741 | 82.215 | 298 | 33 | 4 | 118 | 411 | 8 | 289 | 1.41e-175 | 491 |
| Msa1439900 | MtrunA17_Chr5g0422431 | 57.306 | 438 | 141 | 8 | 10 | 407 | 4 | 435 | 1.28e-162 | 464 |
| Msa1439900 | MtrunA17_Chr7g0227071 | 53.271 | 214 | 98 | 1 | 12 | 223 | 5 | 218 | 1.43e-77 | 248 |
| Msa1439900 | MtrunA17_Chr2g0282871 | 54.762 | 210 | 92 | 2 | 36 | 242 | 25 | 234 | 4.21e-71 | 226 |
| Msa1439900 | MtrunA17_Chr4g0046431 | 45.878 | 279 | 131 | 8 | 20 | 281 | 19 | 294 | 2.77e-69 | 221 |
| Msa1439900 | MtrunA17_Chr8g0389661 | 50.667 | 225 | 101 | 4 | 40 | 256 | 27 | 249 | 6.45e-68 | 223 |
| Msa1439900 | MtrunA17_Chr4g0040541 | 55.080 | 187 | 79 | 2 | 41 | 222 | 24 | 210 | 4.31e-65 | 209 |
| Msa1439900 | MtrunA17_Chr8g0367761 | 52.195 | 205 | 90 | 4 | 20 | 216 | 19 | 223 | 1.55e-64 | 207 |
| Msa1439900 | MtrunA17_Chr2g0324961 | 55.914 | 186 | 78 | 2 | 41 | 222 | 25 | 210 | 3.08e-60 | 197 |
| Msa1439900 | MtrunA17_Chr6g0484441 | 33.520 | 179 | 88 | 10 | 62 | 232 | 5 | 160 | 1.95e-15 | 77.0 |
| Msa1439900 | MtrunA17_Chr2g0318101 | 35.333 | 150 | 71 | 9 | 60 | 202 | 13 | 143 | 1.21e-12 | 68.6 |
| Msa1439900 | MtrunA17_Chr1g0147421 | 31.765 | 170 | 93 | 9 | 62 | 224 | 27 | 180 | 1.65e-11 | 65.5 |
| Msa1439900 | MtrunA17_Chr8g0359921 | 34.752 | 141 | 76 | 6 | 62 | 201 | 14 | 139 | 2.03e-11 | 64.7 |
| Msa1439900 | MtrunA17_Chr3g0124761 | 35.417 | 144 | 72 | 8 | 62 | 202 | 7 | 132 | 6.03e-11 | 63.2 |
| Msa1439900 | MtrunA17_Chr4g0018391 | 24.906 | 265 | 164 | 11 | 62 | 318 | 7 | 244 | 6.20e-11 | 63.5 |
| Msa1439900 | MtrunA17_Chr3g0139331 | 30.675 | 163 | 91 | 9 | 62 | 218 | 11 | 157 | 7.50e-11 | 63.2 |
| Msa1439900 | MtrunA17_Chr7g0217711 | 32.468 | 154 | 86 | 7 | 50 | 201 | 7 | 144 | 9.45e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439900 | AT1G25580.1 | 46.341 | 451 | 180 | 14 | 11 | 411 | 5 | 443 | 1.51e-117 | 350 |
| Msa1439900 | AT3G01600.1 | 51.339 | 224 | 104 | 3 | 11 | 232 | 4 | 224 | 3.06e-72 | 231 |
| Msa1439900 | AT5G14490.2 | 52.113 | 213 | 99 | 2 | 11 | 221 | 4 | 215 | 1.95e-70 | 223 |
| Msa1439900 | AT5G14490.4 | 52.113 | 213 | 99 | 2 | 11 | 221 | 4 | 215 | 3.28e-70 | 225 |
| Msa1439900 | AT5G14490.1 | 52.113 | 213 | 99 | 2 | 11 | 221 | 7 | 218 | 3.98e-70 | 225 |
| Msa1439900 | AT5G14490.3 | 52.113 | 213 | 99 | 2 | 11 | 221 | 7 | 218 | 8.03e-70 | 224 |
| Msa1439900 | AT4G29230.3 | 56.250 | 192 | 73 | 3 | 40 | 222 | 28 | 217 | 1.47e-69 | 226 |
| Msa1439900 | AT4G29230.1 | 56.250 | 192 | 73 | 3 | 40 | 222 | 28 | 217 | 5.92e-69 | 226 |
| Msa1439900 | AT4G29230.2 | 55.729 | 192 | 73 | 3 | 40 | 222 | 28 | 216 | 4.71e-68 | 224 |
| Msa1439900 | AT1G28470.1 | 50.679 | 221 | 98 | 3 | 13 | 227 | 28 | 243 | 5.92e-67 | 216 |
| Msa1439900 | AT5G56620.3 | 52.308 | 195 | 80 | 3 | 40 | 222 | 22 | 215 | 2.30e-64 | 212 |
| Msa1439900 | AT5G56620.2 | 52.308 | 195 | 80 | 3 | 40 | 222 | 22 | 215 | 2.55e-64 | 211 |
| Msa1439900 | AT5G56620.1 | 52.308 | 195 | 80 | 3 | 40 | 222 | 22 | 215 | 4.46e-64 | 210 |
| Msa1439900 | AT4G28500.1 | 49.776 | 223 | 98 | 5 | 11 | 222 | 2 | 221 | 9.97e-64 | 207 |
| Msa1439900 | AT3G18400.1 | 32.738 | 168 | 92 | 7 | 62 | 224 | 5 | 156 | 1.41e-13 | 71.6 |
| Msa1439900 | AT5G18270.2 | 30.041 | 243 | 121 | 14 | 54 | 275 | 13 | 227 | 2.29e-13 | 71.2 |
| Msa1439900 | AT5G18270.1 | 30.041 | 243 | 121 | 14 | 54 | 275 | 13 | 227 | 3.10e-13 | 70.9 |
| Msa1439900 | AT5G39610.1 | 33.721 | 172 | 86 | 7 | 47 | 217 | 10 | 154 | 1.49e-12 | 68.2 |
| Msa1439900 | AT5G53950.1 | 31.019 | 216 | 121 | 10 | 62 | 267 | 17 | 214 | 2.08e-12 | 68.6 |
| Msa1439900 | AT1G01720.1 | 36.111 | 144 | 71 | 8 | 62 | 202 | 7 | 132 | 4.26e-12 | 67.0 |
| Msa1439900 | AT3G04420.2 | 31.056 | 161 | 94 | 7 | 63 | 220 | 4 | 150 | 2.25e-11 | 64.7 |
| Msa1439900 | AT1G02230.1 | 31.361 | 169 | 92 | 8 | 63 | 224 | 4 | 155 | 2.65e-11 | 65.1 |
| Msa1439900 | AT1G02220.1 | 29.375 | 160 | 93 | 6 | 63 | 219 | 4 | 146 | 3.88e-11 | 64.7 |
| Msa1439900 | AT3G12910.1 | 30.864 | 162 | 91 | 8 | 51 | 206 | 9 | 155 | 4.04e-11 | 63.9 |
| Msa1439900 | AT3G04420.1 | 31.056 | 161 | 94 | 7 | 63 | 220 | 4 | 150 | 7.87e-11 | 63.5 |
Find 98 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTCTTGGTCTACAAAAT+TGG | 0.165705 | tig0028915:-7349 | Msa1439900:intergenic |
| TGCCAGTGTGGTCAAGATTT+TGG | 0.220058 | tig0028915:-8135 | Msa1439900:intergenic |
| TATGGTGAGTTTCTTGTTCT+TGG | 0.221376 | tig0028915:-7362 | Msa1439900:intergenic |
| ATAGTTGCTTCCGCGGTTTC+AGG | 0.226841 | tig0028915:-7267 | Msa1439900:intergenic |
| TCCACAACATGTTGACAATT+AGG | 0.244707 | tig0028915:-4410 | Msa1439900:intergenic |
| AGGTCCAGTGGTCGCAAAAT+TGG | 0.270772 | tig0028915:-7313 | Msa1439900:intergenic |
| ATTTATCACTACTCTTAAAA+TGG | 0.271764 | tig0028915:+6765 | Msa1439900:CDS |
| CCAGCAGCAGCAAGCCATAT+TGG | 0.276087 | tig0028915:+7221 | Msa1439900:CDS |
| TCGAACCAAGAAAATGTTTC+CGG | 0.290852 | tig0028915:-7989 | Msa1439900:intergenic |
| TGACATGCCACTGAATCTAT+TGG | 0.299354 | tig0028915:+7958 | Msa1439900:CDS |
| CATCTGATCAAGAGATAATA+TGG | 0.323541 | tig0028915:+6686 | Msa1439900:CDS |
| TCTTCTAACTGAGGAAGATT+TGG | 0.326168 | tig0028915:-7842 | Msa1439900:intergenic |
| GGATCAAATTTAACACCTTT+AGG | 0.328542 | tig0028915:-6664 | Msa1439900:intergenic |
| CCACAACATGTTGACAATTA+GGG | 0.332418 | tig0028915:-4409 | Msa1439900:intergenic |
| ATGTCTTTCTTTAACTGCTC+TGG | 0.340220 | tig0028915:-8103 | Msa1439900:intergenic |
| GAATCTATTGGATTCACTTC+CGG | 0.358496 | tig0028915:+7970 | Msa1439900:CDS |
| TGTTCTTGGTCTACAAAATT+GGG | 0.368626 | tig0028915:-7348 | Msa1439900:intergenic |
| GTACACTTGCAACCGCTATA+AGG | 0.374099 | tig0028915:+4330 | Msa1439900:CDS |
| CAGCAGCAGCAAGCCATATT+GGG | 0.389779 | tig0028915:+7222 | Msa1439900:CDS |
| TATAAGCTTTCACTGCTCTA+TGG | 0.392319 | tig0028915:-6948 | Msa1439900:intergenic |
| CTTTATATGTTTCCAGAGAA+TGG | 0.394253 | tig0028915:+7099 | Msa1439900:CDS |
| TGAACTCCGTTCAAGAAGAT+AGG | 0.395219 | tig0028915:-7051 | Msa1439900:intergenic |
| GGTTACAAACCTCTGCAAAA+TGG | 0.397380 | tig0028915:-3813 | Msa1439900:intergenic |
| CCAATATGGCTTGCTGCTGC+TGG | 0.415718 | tig0028915:-7221 | Msa1439900:intergenic |
| GGTCCAGTGGTCGCAAAATT+GGG | 0.423971 | tig0028915:-7312 | Msa1439900:intergenic |
| ACCGCTATAAGGTGTGCATC+TGG | 0.428125 | tig0028915:+4341 | Msa1439900:CDS |
| TATGTCCGCTGGCACAAGAC+TGG | 0.431620 | tig0028915:+7018 | Msa1439900:CDS |
| GCAGTGAAAGCTTATAGTAC+TGG | 0.438200 | tig0028915:+6955 | Msa1439900:CDS |
| CGACATTCGATTAAGTCAAC+TGG | 0.441693 | tig0028915:+8183 | Msa1439900:CDS |
| AAAGTTCTACCTGAGGAATA+TGG | 0.448471 | tig0028915:-7380 | Msa1439900:intergenic |
| AGAATGGCTACTTAATAGTC+AGG | 0.475425 | tig0028915:+7862 | Msa1439900:CDS |
| TTAACACCTTTAGGAAGTCC+AGG | 0.482399 | tig0028915:-6655 | Msa1439900:intergenic |
| GCCAGTCTCCGAAAAGGCAC+AGG | 0.483606 | tig0028915:+8026 | Msa1439900:CDS |
| AATATAGGTGTTTCACAAGA+TGG | 0.488029 | tig0028915:+6907 | Msa1439900:intron |
| CAGAAGAGGATGAGAGGGAA+GGG | 0.488806 | tig0028915:+7172 | Msa1439900:CDS |
| GTTATGCATCAGTATCATCT+TGG | 0.493181 | tig0028915:+7147 | Msa1439900:CDS |
| CTTTCGACATATGATCATCT+AGG | 0.495768 | tig0028915:+8079 | Msa1439900:CDS |
| TAGAAACTCAATTTCATGTA+GGG | 0.504338 | tig0028915:+7924 | Msa1439900:CDS |
| ACTCATCCTCAGCATTTGCC+AGG | 0.505505 | tig0028915:+6805 | Msa1439900:CDS |
| TTCAAAGCCAGTCTCCGAAA+AGG | 0.507580 | tig0028915:+8020 | Msa1439900:CDS |
| TTTCCAGAGAATGGAGGAAA+AGG | 0.510158 | tig0028915:+7108 | Msa1439900:CDS |
| ACTACTCTTAAAATGGATGA+TGG | 0.510952 | tig0028915:+6772 | Msa1439900:CDS |
| ACAAAATTGGGACTGATAAG+AGG | 0.512652 | tig0028915:-7336 | Msa1439900:intergenic |
| GTGATAAATGCATCGATGAA+AGG | 0.516322 | tig0028915:-6751 | Msa1439900:intergenic |
| AAGAGTTTGCTTATGTCCGC+TGG | 0.517104 | tig0028915:+7007 | Msa1439900:CDS |
| TGATAAATGCATCGATGAAA+GGG | 0.518562 | tig0028915:-6750 | Msa1439900:intergenic |
| ACAGAAGAGGATGAGAGGGA+AGG | 0.522455 | tig0028915:+7171 | Msa1439900:CDS |
| CGAAAGCGGCGAAGAATATG+TGG | 0.522848 | tig0028915:+6982 | Msa1439900:CDS |
| TAGCGGTTGCAAGTGTACTT+TGG | 0.525421 | tig0028915:-4325 | Msa1439900:intergenic |
| TTCTTGAACGGAGTTCAGAA+AGG | 0.529603 | tig0028915:+7057 | Msa1439900:CDS |
| ATCTTCCTCAGTTAGAAGAA+TGG | 0.529692 | tig0028915:+7846 | Msa1439900:CDS |
| CAATTAGGGCACGCTCTGGT+AGG | 0.534555 | tig0028915:-4395 | Msa1439900:intergenic |
| CATATTATCTCTTGATCAGA+TGG | 0.535616 | tig0028915:-6685 | Msa1439900:intergenic |
| TGGCACTTGCTTGCAAAAGT+TGG | 0.539348 | tig0028915:+6706 | Msa1439900:CDS |
| TCTTTCCAGTCTTGTGCCAG+CGG | 0.546974 | tig0028915:-7023 | Msa1439900:intergenic |
| TTGACAATTAGGGCACGCTC+TGG | 0.548349 | tig0028915:-4399 | Msa1439900:intergenic |
| GAGTGGCCTGGACTTCCTAA+AGG | 0.554416 | tig0028915:+6649 | Msa1439900:CDS |
| ATGCAGACCATCGTGGTTGG+TGG | 0.556083 | tig0028915:+4301 | Msa1439900:intron |
| GTAGAAACTCAATTTCATGT+AGG | 0.560253 | tig0028915:+7923 | Msa1439900:CDS |
| TGGAACAGAAGAGGATGAGA+GGG | 0.560783 | tig0028915:+7167 | Msa1439900:CDS |
| TCACAGGAGCTATATCGACT+AGG | 0.561856 | tig0028915:+8316 | Msa1439900:CDS |
| CCCTAATTGTCAACATGTTG+TGG | 0.563512 | tig0028915:+4409 | Msa1439900:CDS |
| AGAAACTCACCATATTCCTC+AGG | 0.572055 | tig0028915:+7371 | Msa1439900:CDS |
| TTGCTTGCAAAAGTTGGTGA+AGG | 0.575602 | tig0028915:+6712 | Msa1439900:CDS |
| TAGGTAACACAAGAGTGGCC+TGG | 0.577846 | tig0028915:+6637 | Msa1439900:intron |
| CACAGGAGCTATATCGACTA+GGG | 0.578105 | tig0028915:+8317 | Msa1439900:CDS |
| ATAGTCAGGATGACTGTGAA+GGG | 0.580319 | tig0028915:+7876 | Msa1439900:CDS |
| ACTAAACCTATCTTCTTGAA+CGG | 0.586510 | tig0028915:+7045 | Msa1439900:CDS |
| TGATCATATGTCGAAAGACT+AGG | 0.588679 | tig0028915:-8073 | Msa1439900:intergenic |
| CTTATAGGAATTCAGCTCAC+AGG | 0.592344 | tig0028915:+8300 | Msa1439900:intron |
| TTGGAACAGAAGAGGATGAG+AGG | 0.602637 | tig0028915:+7166 | Msa1439900:CDS |
| AATAGTCAGGATGACTGTGA+AGG | 0.603938 | tig0028915:+7875 | Msa1439900:CDS |
| TGAAATTGAGTTTCTACCGT+CGG | 0.610371 | tig0028915:-7917 | Msa1439900:intergenic |
| CAGTTGACTTAATCGAATGT+CGG | 0.615405 | tig0028915:-8182 | Msa1439900:intergenic |
| AATGCATCGATGAAAGGGTG+AGG | 0.617026 | tig0028915:-6745 | Msa1439900:intergenic |
| GTATCATCTTGGAACAGAAG+AGG | 0.624650 | tig0028915:+7158 | Msa1439900:CDS |
| AGTAGCCATTCTTCTAACTG+AGG | 0.625387 | tig0028915:-7851 | Msa1439900:intergenic |
| CCAGTCTCCGAAAAGGCACA+GGG | 0.626166 | tig0028915:+8027 | Msa1439900:CDS |
| ATTCGCAATAGTTGCTTCCG+CGG | 0.627295 | tig0028915:-7274 | Msa1439900:intergenic |
| TCCAGATGCACACCTTATAG+CGG | 0.632029 | tig0028915:-4342 | Msa1439900:intergenic |
| CAAGCTCTACATTGCCAGTG+TGG | 0.632863 | tig0028915:-8147 | Msa1439900:intergenic |
| TATATGCAGACCATCGTGGT+TGG | 0.636765 | tig0028915:+4298 | Msa1439900:intron |
| TCAAGATGTTCCTGAAACCG+CGG | 0.637589 | tig0028915:+7257 | Msa1439900:CDS |
| AGTGAATCCAATAGATTCAG+TGG | 0.638302 | tig0028915:-7965 | Msa1439900:intergenic |
| TACAAACCTCTGCAAAATGG+AGG | 0.639210 | tig0028915:-3810 | Msa1439900:intergenic |
| AGAGCAGTTAAAGAAAGACA+TGG | 0.639913 | tig0028915:+8105 | Msa1439900:CDS |
| CATATGTCGAAAGACTAGGC+TGG | 0.640562 | tig0028915:-8069 | Msa1439900:intergenic |
| GTTGTTAGGTAACACAAGAG+TGG | 0.643631 | tig0028915:+6632 | Msa1439900:intron |
| TATCCACCTGGCAAATGCTG+AGG | 0.644206 | tig0028915:-6811 | Msa1439900:intergenic |
| ATAGTACTGGAAGTCGAAAG+CGG | 0.647551 | tig0028915:+6968 | Msa1439900:CDS |
| CTTATATATGCAGACCATCG+TGG | 0.659760 | tig0028915:+4294 | Msa1439900:intron |
| TCCGAAAATTGATCTACCGA+CGG | 0.660122 | tig0028915:+7901 | Msa1439900:CDS |
| TATATGTTTCCAGAGAATGG+AGG | 0.668040 | tig0028915:+7102 | Msa1439900:CDS |
| ACTGATAAGAGGAGGTCCAG+TGG | 0.673260 | tig0028915:-7325 | Msa1439900:intergenic |
| TGCCAAAATCTTGACCACAC+TGG | 0.683464 | tig0028915:+8133 | Msa1439900:CDS |
| CTTTGGTCCACCAACCACGA+TGG | 0.684049 | tig0028915:-4308 | Msa1439900:intergenic |
| AAATTGGGACTGATAAGAGG+AGG | 0.689769 | tig0028915:-7333 | Msa1439900:intergenic |
| AGGAGCTATATCGACTAGGG+TGG | 0.690179 | tig0028915:+8320 | Msa1439900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAAAATATTAATATT+AGG | + | tig0028915:5031-5050 | Msa1439900:intron | 0.0% |
| !! | TAAATAAAATATTAATATTA+GGG | + | tig0028915:5032-5051 | Msa1439900:intron | 0.0% |
| !! | ATTATAGAAAAATAATGTTA+GGG | - | tig0028915:6125-6144 | Msa1439900:intergenic | 10.0% |
| !! | TATTATAGAAAAATAATGTT+AGG | - | tig0028915:6126-6145 | Msa1439900:intergenic | 10.0% |
| !! | ATAAAATGAATTTAACATAA+TGG | - | tig0028915:8235-8254 | Msa1439900:intergenic | 10.0% |
| !! | AACAAATCAAAGAAATTTAA+AGG | - | tig0028915:4647-4666 | Msa1439900:intergenic | 15.0% |
| !!! | ACACAGATTTTTATTTATAT+AGG | - | tig0028915:6068-6087 | Msa1439900:intergenic | 15.0% |
| !! | ATACAATAAGAAAATATTAG+TGG | - | tig0028915:7456-7475 | Msa1439900:intergenic | 15.0% |
| !! | AAAAGAATGTCTAAAAATAA+TGG | - | tig0028915:7545-7564 | Msa1439900:intergenic | 15.0% |
| !!! | GAGATTAATTTTAATAGTTT+TGG | + | tig0028915:7752-7771 | Msa1439900:intron | 15.0% |
| !!! | TGTTTTAAATCATATTTCAC+TGG | + | tig0028915:4474-4493 | Msa1439900:intron | 20.0% |
| !!! | TGTGATTTGTTAAATGAATA+TGG | - | tig0028915:4579-4598 | Msa1439900:intergenic | 20.0% |
| !! | AGAATGTAGAAGAAATTTAA+AGG | - | tig0028915:4687-4706 | Msa1439900:intergenic | 20.0% |
| !! | AAATAAATTGCTCAACTTAA+AGG | - | tig0028915:5287-5306 | Msa1439900:intergenic | 20.0% |
| !! | AATTGTAGATGGATAAATAA+AGG | - | tig0028915:5351-5370 | Msa1439900:intergenic | 20.0% |
| !!! | ACTTATTTTACTTAGAAGTT+AGG | - | tig0028915:6097-6116 | Msa1439900:intergenic | 20.0% |
| !! | TAAGAACAAAGATCAAAATT+GGG | - | tig0028915:6513-6532 | Msa1439900:intergenic | 20.0% |
| !! | ATAAGAACAAAGATCAAAAT+TGG | - | tig0028915:6514-6533 | Msa1439900:intergenic | 20.0% |
| !! | AAGAACAAAGATCAAATTAT+TGG | - | tig0028915:6545-6564 | Msa1439900:intergenic | 20.0% |
| !! | ATATATAAGTGTGATACTTT+AGG | - | tig0028915:6589-6608 | Msa1439900:intergenic | 20.0% |
| !! | TTTGAATAATTTCTGTTGTT+AGG | + | tig0028915:6618-6637 | Msa1439900:intron | 20.0% |
| !! | ATTTATCACTACTCTTAAAA+TGG | + | tig0028915:6765-6784 | Msa1439900:CDS | 20.0% |
| !! | GCTATATGATTAAACAATAT+AGG | + | tig0028915:6892-6911 | Msa1439900:intron | 20.0% |
| !!! | TTTTCTTGTGTAAATGAATT+AGG | + | tig0028915:7639-7658 | Msa1439900:intron | 20.0% |
| !!! | ATTTTAATAGTTTTGGTTTG+TGG | + | tig0028915:7759-7778 | Msa1439900:intron | 20.0% |
| !! | AAATATGAAAATAACCTAAG+TGG | + | tig0028915:7782-7801 | Msa1439900:intron | 20.0% |
| !! | TTTAAAGGAATGTTGATGAA+AGG | - | tig0028915:4632-4651 | Msa1439900:intergenic | 25.0% |
| ! | GGAAAATAGAAAATAAATGG+AGG | - | tig0028915:5134-5153 | Msa1439900:intergenic | 25.0% |
| ! | GTGGGAAAATAGAAAATAAA+TGG | - | tig0028915:5137-5156 | Msa1439900:intergenic | 25.0% |
| ! | ATGGCTCTTAATATTATTTG+TGG | + | tig0028915:5227-5246 | Msa1439900:intron | 25.0% |
| ! | TCCATCTACAATTGAAAAAA+AGG | + | tig0028915:5358-5377 | Msa1439900:intron | 25.0% |
| !!! | ACCTTTTTTTCAATTGTAGA+TGG | - | tig0028915:5362-5381 | Msa1439900:intergenic | 25.0% |
| ! | AAAACAATGATGATCAATGA+GGG | - | tig0028915:5421-5440 | Msa1439900:intergenic | 25.0% |
| !! | CTCAACAGTAAATTTGAAAT+CGG | + | tig0028915:5715-5734 | Msa1439900:intron | 25.0% |
| !! | TCAACAGTAAATTTGAAATC+GGG | + | tig0028915:5716-5735 | Msa1439900:intron | 25.0% |
| ! | AAGGATGTTGTATTTGATAT+GGG | - | tig0028915:5809-5828 | Msa1439900:intergenic | 25.0% |
| ! | TTTGTGCTTCATAAAAACTA+TGG | + | tig0028915:5878-5897 | Msa1439900:intron | 25.0% |
| ! | ATTTATATAGGCATGAATAG+CGG | - | tig0028915:6056-6075 | Msa1439900:intergenic | 25.0% |
| ! | ATGCAGTTATATCGATATTA+GGG | - | tig0028915:6155-6174 | Msa1439900:intergenic | 25.0% |
| ! | AAGAGGGAAAGAAAAAAAAA+GGG | - | tig0028915:6202-6221 | Msa1439900:intergenic | 25.0% |
| ! | AATTTATTCCTGTGTGATTA+GGG | + | tig0028915:6281-6300 | Msa1439900:intron | 25.0% |
| ! | CTAAATCATTCACAATGATT+TGG | - | tig0028915:6409-6428 | Msa1439900:intergenic | 25.0% |
| ! | ATGCTATAATGTCATGTATT+TGG | - | tig0028915:6460-6479 | Msa1439900:intergenic | 25.0% |
| ! | AAATACATGACATTATAGCA+TGG | + | tig0028915:6459-6478 | Msa1439900:intron | 25.0% |
| !!! | TGTATCTTTTGCTTTGTTTT+TGG | + | tig0028915:7471-7490 | Msa1439900:intron | 25.0% |
| !! | ACATTCTTTTGCTTTCTTAT+TGG | + | tig0028915:7555-7574 | Msa1439900:intron | 25.0% |
| !! | TGACACGAAATATTAATTTG+TGG | + | tig0028915:7590-7609 | Msa1439900:intron | 25.0% |
| ! | AAGAACAAAATTATCCACTT+AGG | - | tig0028915:7799-7818 | Msa1439900:intergenic | 25.0% |
| ! | TAGAAACTCAATTTCATGTA+GGG | + | tig0028915:7924-7943 | Msa1439900:CDS | 25.0% |
| AAAGTTTGCAAGCATAATCT+AGG | - | tig0028915:3967-3986 | Msa1439900:intergenic | 30.0% | |
| ! | ACTTTCTGATGTAACTTTTG+CGG | - | tig0028915:4372-4391 | Msa1439900:intergenic | 30.0% |
| ! | GAAGAAATAGATTTAGAGCT+TGG | - | tig0028915:4610-4629 | Msa1439900:intergenic | 30.0% |
| CAAGAGATGCACAAAAAATT+AGG | + | tig0028915:4876-4895 | Msa1439900:intron | 30.0% | |
| !! | GAAATTCTAAAATGTACGAC+AGG | + | tig0028915:5054-5073 | Msa1439900:intron | 30.0% |
| TGTTTACACTTACCATAGAA+GGG | - | tig0028915:5164-5183 | Msa1439900:intergenic | 30.0% | |
| TTGTTTACACTTACCATAGA+AGG | - | tig0028915:5165-5184 | Msa1439900:intergenic | 30.0% | |
| CAAAACAATGATGATCAATG+AGG | - | tig0028915:5422-5441 | Msa1439900:intergenic | 30.0% | |
| GAAGGATGTTGTATTTGATA+TGG | - | tig0028915:5810-5829 | Msa1439900:intergenic | 30.0% | |
| AATACAACATCCTTCTCTAA+CGG | + | tig0028915:5815-5834 | Msa1439900:intron | 30.0% | |
| ! | CAAAGATTAGATGTATTGGT+GGG | - | tig0028915:5853-5872 | Msa1439900:intergenic | 30.0% |
| TCAAAGATTAGATGTATTGG+TGG | - | tig0028915:5854-5873 | Msa1439900:intergenic | 30.0% | |
| ACCAATACATCTAATCTTTG+AGG | + | tig0028915:5853-5872 | Msa1439900:intron | 30.0% | |
| ACCTCAAAGATTAGATGTAT+TGG | - | tig0028915:5857-5876 | Msa1439900:intergenic | 30.0% | |
| GAGAGAAGAGAACTATATTA+GGG | - | tig0028915:5950-5969 | Msa1439900:intergenic | 30.0% | |
| TGAGAGAAGAGAACTATATT+AGG | - | tig0028915:5951-5970 | Msa1439900:intergenic | 30.0% | |
| CATGCAGTTATATCGATATT+AGG | - | tig0028915:6156-6175 | Msa1439900:intergenic | 30.0% | |
| GAAAAAAAAAGGGTTTCTGT+TGG | - | tig0028915:6192-6211 | Msa1439900:intergenic | 30.0% | |
| GAAGAGGGAAAGAAAAAAAA+AGG | - | tig0028915:6203-6222 | Msa1439900:intergenic | 30.0% | |
| GTATTACATCTACGTCTATT+GGG | - | tig0028915:6252-6271 | Msa1439900:intergenic | 30.0% | |
| TGTATTACATCTACGTCTAT+TGG | - | tig0028915:6253-6272 | Msa1439900:intergenic | 30.0% | |
| GAATTTATTCCTGTGTGATT+AGG | + | tig0028915:6280-6299 | Msa1439900:intron | 30.0% | |
| ! | TTACTAGCTAGTATTTCTAC+GGG | - | tig0028915:6319-6338 | Msa1439900:intergenic | 30.0% |
| ! | CTTACTAGCTAGTATTTCTA+CGG | - | tig0028915:6320-6339 | Msa1439900:intergenic | 30.0% |
| AGTAGACCAAATGAATGATA+GGG | + | tig0028915:6343-6362 | Msa1439900:intron | 30.0% | |
| GGATCAAATTTAACACCTTT+AGG | - | tig0028915:6667-6686 | Msa1439900:intergenic | 30.0% | |
| CATATTATCTCTTGATCAGA+TGG | - | tig0028915:6688-6707 | Msa1439900:intergenic | 30.0% | |
| CATCTGATCAAGAGATAATA+TGG | + | tig0028915:6686-6705 | Msa1439900:CDS | 30.0% | |
| ! | TGATAAATGCATCGATGAAA+GGG | - | tig0028915:6753-6772 | Msa1439900:intergenic | 30.0% |
| ACTACTCTTAAAATGGATGA+TGG | + | tig0028915:6772-6791 | Msa1439900:CDS | 30.0% | |
| AATATAGGTGTTTCACAAGA+TGG | + | tig0028915:6907-6926 | Msa1439900:intron | 30.0% | |
| ACTAAACCTATCTTCTTGAA+CGG | + | tig0028915:7045-7064 | Msa1439900:CDS | 30.0% | |
| CTTTATATGTTTCCAGAGAA+TGG | + | tig0028915:7099-7118 | Msa1439900:CDS | 30.0% | |
| ! | AAAAGGTGCAAAAACTAACT+GGG | + | tig0028915:7125-7144 | Msa1439900:CDS | 30.0% |
| ! | ATCATCTTTTCTTCCCAATA+TGG | - | tig0028915:7238-7257 | Msa1439900:intergenic | 30.0% |
| TGTTCTTGGTCTACAAAATT+GGG | - | tig0028915:7351-7370 | Msa1439900:intergenic | 30.0% | |
| TTGTTCTTGGTCTACAAAAT+TGG | - | tig0028915:7352-7371 | Msa1439900:intergenic | 30.0% | |
| !!! | TTTTGCTTTGTTTTTGGAAG+AGG | + | tig0028915:7477-7496 | Msa1439900:intron | 30.0% |
| !!! | TTTGCTTTGTTTTTGGAAGA+GGG | + | tig0028915:7478-7497 | Msa1439900:intron | 30.0% |
| ! | TCTTTTGCTTTCTTATTGGT+TGG | + | tig0028915:7559-7578 | Msa1439900:intron | 30.0% |
| TCTTGTGTAAATGAATTAGG+AGG | + | tig0028915:7642-7661 | Msa1439900:intron | 30.0% | |
| ! | AATAGTTTAGCTTAAGACCA+GGG | + | tig0028915:7665-7684 | Msa1439900:intron | 30.0% |
| TGAATTAAGAATTAGAACCC+TGG | - | tig0028915:7685-7704 | Msa1439900:intergenic | 30.0% | |
| TTTCTAACACCAATTCAGAA+TGG | + | tig0028915:7709-7728 | Msa1439900:intron | 30.0% | |
| TTCTAACACCAATTCAGAAT+GGG | + | tig0028915:7710-7729 | Msa1439900:intron | 30.0% | |
| GTAGAAACTCAATTTCATGT+AGG | + | tig0028915:7923-7942 | Msa1439900:CDS | 30.0% | |
| ! | TGATGCATTTTTGTGCTTAT+AGG | + | tig0028915:8285-8304 | Msa1439900:intron | 30.0% |
| TCGAAGTTGTGATGTAGTTA+TGG | + | tig0028915:3915-3934 | Msa1439900:intron | 35.0% | |
| !!! | GCAAACTTTTTCTGAAACCT+AGG | + | tig0028915:3978-3997 | Msa1439900:intron | 35.0% |
| TCAACCACATTTAAGTCCAA+CGG | - | tig0028915:4042-4061 | Msa1439900:intergenic | 35.0% | |
| ATTTCGCCTTCATTCTGATT+CGG | + | tig0028915:4063-4082 | Msa1439900:intron | 35.0% | |
| CCACAACATGTTGACAATTA+GGG | - | tig0028915:4412-4431 | Msa1439900:intergenic | 35.0% | |
| TCCACAACATGTTGACAATT+AGG | - | tig0028915:4413-4432 | Msa1439900:intergenic | 35.0% | |
| ATATTGCATTTCTGTGCGTA+AGG | + | tig0028915:4521-4540 | Msa1439900:intron | 35.0% | |
| TGTGCGTAAGGTTTATTTCA+TGG | + | tig0028915:4533-4552 | Msa1439900:intron | 35.0% | |
| TACTCCTAAGACATTGATCA+CGG | + | tig0028915:4720-4739 | Msa1439900:intron | 35.0% | |
| AAACTGTCGTCAAATTTCGT+CGG | + | tig0028915:5183-5202 | Msa1439900:intron | 35.0% | |
| ATATTAAGAGCCATGCTATG+CGG | - | tig0028915:5221-5240 | Msa1439900:intergenic | 35.0% | |
| AATCCTTGTAGATGTGTCTA+AGG | + | tig0028915:5452-5471 | Msa1439900:intron | 35.0% | |
| ATACAACATCCTTCTCTAAC+GGG | + | tig0028915:5816-5835 | Msa1439900:intron | 35.0% | |
| ATTGAATTTCCCGTTAGAGA+AGG | - | tig0028915:5828-5847 | Msa1439900:intergenic | 35.0% | |
| TCTTTCCCTCTTCTTCTAAA+CGG | + | tig0028915:6210-6229 | Msa1439900:intron | 35.0% | |
| TAAGACCGTTTAGAAGAAGA+GGG | - | tig0028915:6218-6237 | Msa1439900:intergenic | 35.0% | |
| ATAAGACCGTTTAGAAGAAG+AGG | - | tig0028915:6219-6238 | Msa1439900:intergenic | 35.0% | |
| CAGTAGACCAAATGAATGAT+AGG | + | tig0028915:6342-6361 | Msa1439900:intron | 35.0% | |
| CTATTGCCCTATCATTCATT+TGG | - | tig0028915:6352-6371 | Msa1439900:intergenic | 35.0% | |
| CAAATGAATGATAGGGCAAT+AGG | + | tig0028915:6350-6369 | Msa1439900:intron | 35.0% | |
| ! | GTGATAAATGCATCGATGAA+AGG | - | tig0028915:6754-6773 | Msa1439900:intergenic | 35.0% |
| TAAAGCTTAGATTATCCACC+TGG | - | tig0028915:6826-6845 | Msa1439900:intergenic | 35.0% | |
| TATAAGCTTTCACTGCTCTA+TGG | - | tig0028915:6951-6970 | Msa1439900:intergenic | 35.0% | |
| GAAAGGCTGCAAAAAGATTA+TGG | + | tig0028915:7074-7093 | Msa1439900:CDS | 35.0% | |
| TATATGTTTCCAGAGAATGG+AGG | + | tig0028915:7102-7121 | Msa1439900:CDS | 35.0% | |
| ! | GAAAAGGTGCAAAAACTAAC+TGG | + | tig0028915:7124-7143 | Msa1439900:CDS | 35.0% |
| GTTATGCATCAGTATCATCT+TGG | + | tig0028915:7147-7166 | Msa1439900:CDS | 35.0% | |
| ACAAAATTGGGACTGATAAG+AGG | - | tig0028915:7339-7358 | Msa1439900:intergenic | 35.0% | |
| TATGGTGAGTTTCTTGTTCT+TGG | - | tig0028915:7365-7384 | Msa1439900:intergenic | 35.0% | |
| AAAGTTCTACCTGAGGAATA+TGG | - | tig0028915:7383-7402 | Msa1439900:intergenic | 35.0% | |
| GAAGTTAAAAGTTCTACCTG+AGG | - | tig0028915:7390-7409 | Msa1439900:intergenic | 35.0% | |
| TATTAGTGGCAGATGATAAC+TGG | - | tig0028915:7442-7461 | Msa1439900:intergenic | 35.0% | |
| ! | GAATAGTTTAGCTTAAGACC+AGG | + | tig0028915:7664-7683 | Msa1439900:intron | 35.0% |
| GAATCATTCCCATTCTGAAT+TGG | - | tig0028915:7721-7740 | Msa1439900:intergenic | 35.0% | |
| TCTTCTAACTGAGGAAGATT+TGG | - | tig0028915:7845-7864 | Msa1439900:intergenic | 35.0% | |
| ATCTTCCTCAGTTAGAAGAA+TGG | + | tig0028915:7846-7865 | Msa1439900:CDS | 35.0% | |
| AGAATGGCTACTTAATAGTC+AGG | + | tig0028915:7862-7881 | Msa1439900:CDS | 35.0% | |
| TGAAATTGAGTTTCTACCGT+CGG | - | tig0028915:7920-7939 | Msa1439900:intergenic | 35.0% | |
| AGTGAATCCAATAGATTCAG+TGG | - | tig0028915:7968-7987 | Msa1439900:intergenic | 35.0% | |
| GAATCTATTGGATTCACTTC+CGG | + | tig0028915:7970-7989 | Msa1439900:CDS | 35.0% | |
| TCGAACCAAGAAAATGTTTC+CGG | - | tig0028915:7992-8011 | Msa1439900:intergenic | 35.0% | |
| TGATCATATGTCGAAAGACT+AGG | - | tig0028915:8076-8095 | Msa1439900:intergenic | 35.0% | |
| CTTTCGACATATGATCATCT+AGG | + | tig0028915:8079-8098 | Msa1439900:CDS | 35.0% | |
| ATGTCTTTCTTTAACTGCTC+TGG | - | tig0028915:8106-8125 | Msa1439900:intergenic | 35.0% | |
| AGAGCAGTTAAAGAAAGACA+TGG | + | tig0028915:8105-8124 | Msa1439900:CDS | 35.0% | |
| ! | CAGTTGACTTAATCGAATGT+CGG | - | tig0028915:8185-8204 | Msa1439900:intergenic | 35.0% |
| TACAAACCTCTGCAAAATGG+AGG | - | tig0028915:3813-3832 | Msa1439900:intergenic | 40.0% | |
| GGTTACAAACCTCTGCAAAA+TGG | - | tig0028915:3816-3835 | Msa1439900:intergenic | 40.0% | |
| GTAACCACATGTAGCTTATG+CGG | + | tig0028915:3830-3849 | Msa1439900:intron | 40.0% | |
| TAACCACATGTAGCTTATGC+GGG | + | tig0028915:3831-3850 | Msa1439900:intron | 40.0% | |
| CTACATCACAACTTCGACTT+GGG | - | tig0028915:3912-3931 | Msa1439900:intergenic | 40.0% | |
| ACTACATCACAACTTCGACT+TGG | - | tig0028915:3913-3932 | Msa1439900:intergenic | 40.0% | |
| CTGAAACCTAGGTATGTTGT+CGG | + | tig0028915:3989-4008 | Msa1439900:intron | 40.0% | |
| TGAAACCTAGGTATGTTGTC+GGG | + | tig0028915:3990-4009 | Msa1439900:intron | 40.0% | |
| GTTTGAATCGTGGATGATGT+GGG | - | tig0028915:4019-4038 | Msa1439900:intergenic | 40.0% | |
| AAACCCGTTGGACTTAAATG+TGG | + | tig0028915:4035-4054 | Msa1439900:intron | 40.0% | |
| CAACCACATTTAAGTCCAAC+GGG | - | tig0028915:4041-4060 | Msa1439900:intergenic | 40.0% | |
| AACCAAATCCCCCAATTAAG+CGG | - | tig0028915:4095-4114 | Msa1439900:intergenic | 40.0% | |
| TTCAAGAACAGTGAACGTGT+TGG | - | tig0028915:4227-4246 | Msa1439900:intergenic | 40.0% | |
| CTTATATATGCAGACCATCG+TGG | + | tig0028915:4294-4313 | Msa1439900:intron | 40.0% | |
| CCCTAATTGTCAACATGTTG+TGG | + | tig0028915:4409-4428 | Msa1439900:CDS | 40.0% | |
| TCTTAGGAGTAAGCACAATG+GGG | - | tig0028915:4711-4730 | Msa1439900:intergenic | 40.0% | |
| GTCTTAGGAGTAAGCACAAT+GGG | - | tig0028915:4712-4731 | Msa1439900:intergenic | 40.0% | |
| TGTCTTAGGAGTAAGCACAA+TGG | - | tig0028915:4713-4732 | Msa1439900:intergenic | 40.0% | |
| ATGACCGTGATCAATGTCTT+AGG | - | tig0028915:4727-4746 | Msa1439900:intergenic | 40.0% | |
| AATCGAAGAAACTCCTCCAT+AGG | + | tig0028915:4752-4771 | Msa1439900:intron | 40.0% | |
| CAGTGTAATTAAGCCTATGG+AGG | - | tig0028915:4768-4787 | Msa1439900:intergenic | 40.0% | |
| GTGCAGTGTAATTAAGCCTA+TGG | - | tig0028915:4771-4790 | Msa1439900:intergenic | 40.0% | |
| TCTCTAAGCTATCCACTCTT+CGG | + | tig0028915:4807-4826 | Msa1439900:intron | 40.0% | |
| TATCCACTCTTCGGTTATTC+TGG | + | tig0028915:4816-4835 | Msa1439900:intron | 40.0% | |
| TTACACTTACCATAGAAGGG+TGG | - | tig0028915:5161-5180 | Msa1439900:intergenic | 40.0% | |
| ACTCCTTAGACACATCTACA+AGG | - | tig0028915:5458-5477 | Msa1439900:intergenic | 40.0% | |
| !! | ATGTGTCTAAGGAGTGTCTA+TGG | + | tig0028915:5463-5482 | Msa1439900:intron | 40.0% |
| TCTAATACGCGTCATACAAG+TGG | + | tig0028915:5529-5548 | Msa1439900:intron | 40.0% | |
| TACAAGTGGCATACTTGAGT+CGG | + | tig0028915:5543-5562 | Msa1439900:intron | 40.0% | |
| !! | GGATCTAAAGAGTGTTGCAA+AGG | + | tig0028915:5564-5583 | Msa1439900:intron | 40.0% |
| TGAATTCAAGTCATGTGTCG+CGG | - | tig0028915:5665-5684 | Msa1439900:intergenic | 40.0% | |
| GCTACAACGTGAAATCTCTA+TGG | - | tig0028915:5691-5710 | Msa1439900:intergenic | 40.0% | |
| ! | ACCACCCATTTGAGATTAGA+CGG | + | tig0028915:5783-5802 | Msa1439900:intron | 40.0% |
| TTAGGGCTCAAGAATGTGAT+TGG | - | tig0028915:5933-5952 | Msa1439900:intergenic | 40.0% | |
| AGAGAGAAGAGAACTCTACT+GGG | - | tig0028915:5996-6015 | Msa1439900:intergenic | 40.0% | |
| AATGATAGGGCAATAGGTAG+AGG | + | tig0028915:6356-6375 | Msa1439900:intron | 40.0% | |
| GTTGTTAGGTAACACAAGAG+TGG | + | tig0028915:6632-6651 | Msa1439900:intron | 40.0% | |
| ! | TTAACACCTTTAGGAAGTCC+AGG | - | tig0028915:6658-6677 | Msa1439900:intergenic | 40.0% |
| !! | TTGCTTGCAAAAGTTGGTGA+AGG | + | tig0028915:6712-6731 | Msa1439900:CDS | 40.0% |
| GCAGTGAAAGCTTATAGTAC+TGG | + | tig0028915:6955-6974 | Msa1439900:CDS | 40.0% | |
| ! | ATAGTACTGGAAGTCGAAAG+CGG | + | tig0028915:6968-6987 | Msa1439900:CDS | 40.0% |
| TGAACTCCGTTCAAGAAGAT+AGG | - | tig0028915:7054-7073 | Msa1439900:intergenic | 40.0% | |
| TTCTTGAACGGAGTTCAGAA+AGG | + | tig0028915:7057-7076 | Msa1439900:CDS | 40.0% | |
| TTTCCAGAGAATGGAGGAAA+AGG | + | tig0028915:7108-7127 | Msa1439900:CDS | 40.0% | |
| GTATCATCTTGGAACAGAAG+AGG | + | tig0028915:7158-7177 | Msa1439900:CDS | 40.0% | |
| AAATTGGGACTGATAAGAGG+AGG | - | tig0028915:7336-7355 | Msa1439900:intergenic | 40.0% | |
| AGAAACTCACCATATTCCTC+AGG | + | tig0028915:7371-7390 | Msa1439900:CDS | 40.0% | |
| ! | GAGGAAGATTTGGTAGAATC+TGG | - | tig0028915:7835-7854 | Msa1439900:intergenic | 40.0% |
| AGTAGCCATTCTTCTAACTG+AGG | - | tig0028915:7854-7873 | Msa1439900:intergenic | 40.0% | |
| AATAGTCAGGATGACTGTGA+AGG | + | tig0028915:7875-7894 | Msa1439900:CDS | 40.0% | |
| ATAGTCAGGATGACTGTGAA+GGG | + | tig0028915:7876-7895 | Msa1439900:CDS | 40.0% | |
| TCCGAAAATTGATCTACCGA+CGG | + | tig0028915:7901-7920 | Msa1439900:CDS | 40.0% | |
| ! | ACCGTCGGTAGATCAATTTT+CGG | - | tig0028915:7905-7924 | Msa1439900:intergenic | 40.0% |
| TGACATGCCACTGAATCTAT+TGG | + | tig0028915:7958-7977 | Msa1439900:CDS | 40.0% | |
| ! | CACTTCCGGAAACATTTTCT+TGG | + | tig0028915:7984-8003 | Msa1439900:CDS | 40.0% |
| ! | TCATTTTCCCTGTGCCTTTT+CGG | - | tig0028915:8037-8056 | Msa1439900:intergenic | 40.0% |
| CGACATTCGATTAAGTCAAC+TGG | + | tig0028915:8183-8202 | Msa1439900:CDS | 40.0% | |
| ! | TGGAAGATCATTGAGAGCAT+TGG | - | tig0028915:8215-8234 | Msa1439900:intergenic | 40.0% |
| CTTATAGGAATTCAGCTCAC+AGG | + | tig0028915:8300-8319 | Msa1439900:intron | 40.0% | |
| ! | TGAGATCCTCCATTTTGCAG+AGG | + | tig0028915:3804-3823 | Msa1439900:CDS | 45.0% |
| AACCACATGTAGCTTATGCG+GGG | + | tig0028915:3832-3851 | Msa1439900:intron | 45.0% | |
| GCACAATTGCAGTTGCATTG+TGG | + | tig0028915:3854-3873 | Msa1439900:intron | 45.0% | |
| GGTTTGAATCGTGGATGATG+TGG | - | tig0028915:4020-4039 | Msa1439900:intergenic | 45.0% | |
| GAGGTTGCAATGAGCAATGA+AGG | - | tig0028915:4120-4139 | Msa1439900:intergenic | 45.0% | |
| AACGTGTTGGAGGTTGCAAT+GGG | - | tig0028915:4214-4233 | Msa1439900:intergenic | 45.0% | |
| AAGAACAGTGAACGTGTTGG+AGG | - | tig0028915:4224-4243 | Msa1439900:intergenic | 45.0% | |
| TATATGCAGACCATCGTGGT+TGG | + | tig0028915:4298-4317 | Msa1439900:intron | 45.0% | |
| TAGCGGTTGCAAGTGTACTT+TGG | - | tig0028915:4328-4347 | Msa1439900:intergenic | 45.0% | |
| GTACACTTGCAACCGCTATA+AGG | + | tig0028915:4330-4349 | Msa1439900:CDS | 45.0% | |
| TCCAGATGCACACCTTATAG+CGG | - | tig0028915:4345-4364 | Msa1439900:intergenic | 45.0% | |
| GGATAGCTTAGAGAGACAAG+TGG | - | tig0028915:4801-4820 | Msa1439900:intergenic | 45.0% | |
| AGTGCATTTCGTGCTTTCGT+TGG | - | tig0028915:5084-5103 | Msa1439900:intergenic | 45.0% | |
| TTACCATAGAAGGGTGGTGT+GGG | - | tig0028915:5155-5174 | Msa1439900:intergenic | 45.0% | |
| GTTGTTTGTACCGCATAGCA+TGG | + | tig0028915:5208-5227 | Msa1439900:intron | 45.0% | |
| GACACTCGTACGACACATAT+CGG | - | tig0028915:5620-5639 | Msa1439900:intergenic | 45.0% | |
| GATATGTGTCGTACGAGTGT+CGG | + | tig0028915:5619-5638 | Msa1439900:intron | 45.0% | |
| GGCAGTCGAAGTTTCAAACA+CGG | + | tig0028915:5737-5756 | Msa1439900:intron | 45.0% | |
| TGGGCCGTCTAATCTCAAAT+GGG | - | tig0028915:5790-5809 | Msa1439900:intergenic | 45.0% | |
| ATGGGCCGTCTAATCTCAAA+TGG | - | tig0028915:5791-5810 | Msa1439900:intergenic | 45.0% | |
| GAGAGAAGAGAACTCTACTG+GGG | - | tig0028915:5995-6014 | Msa1439900:intergenic | 45.0% | |
| CAGAGAGAAGAGAACTCTAC+TGG | - | tig0028915:5997-6016 | Msa1439900:intergenic | 45.0% | |
| TTCCTGTGTGATTAGGGCTT+TGG | + | tig0028915:6287-6306 | Msa1439900:intron | 45.0% | |
| TGGCACTTGCTTGCAAAAGT+TGG | + | tig0028915:6706-6725 | Msa1439900:CDS | 45.0% | |
| ! | AATGCATCGATGAAAGGGTG+AGG | - | tig0028915:6748-6767 | Msa1439900:intergenic | 45.0% |
| ! | AAGAGTTTGCTTATGTCCGC+TGG | + | tig0028915:7007-7026 | Msa1439900:CDS | 45.0% |
| TTGGAACAGAAGAGGATGAG+AGG | + | tig0028915:7166-7185 | Msa1439900:CDS | 45.0% | |
| TGGAACAGAAGAGGATGAGA+GGG | + | tig0028915:7167-7186 | Msa1439900:CDS | 45.0% | |
| TCAAGATGTTCCTGAAACCG+CGG | + | tig0028915:7257-7276 | Msa1439900:CDS | 45.0% | |
| ATTCGCAATAGTTGCTTCCG+CGG | - | tig0028915:7277-7296 | Msa1439900:intergenic | 45.0% | |
| TTCAAAGCCAGTCTCCGAAA+AGG | + | tig0028915:8020-8039 | Msa1439900:CDS | 45.0% | |
| CATATGTCGAAAGACTAGGC+TGG | - | tig0028915:8072-8091 | Msa1439900:intergenic | 45.0% | |
| TGCCAAAATCTTGACCACAC+TGG | + | tig0028915:8133-8152 | Msa1439900:CDS | 45.0% | |
| ! | TGCCAGTGTGGTCAAGATTT+TGG | - | tig0028915:8138-8157 | Msa1439900:intergenic | 45.0% |
| ! | TCACAGGAGCTATATCGACT+AGG | + | tig0028915:8316-8335 | Msa1439900:CDS | 45.0% |
| ! | CACAGGAGCTATATCGACTA+GGG | + | tig0028915:8317-8336 | Msa1439900:CDS | 45.0% |
| TTGCAGTTGCATTGTGGTCG+TGG | + | tig0028915:3860-3879 | Msa1439900:intron | 50.0% | |
| GGAATCCCGACAACATACCT+AGG | - | tig0028915:3998-4017 | Msa1439900:intergenic | 50.0% | |
| CATCCACGATTCAAACCCGT+TGG | + | tig0028915:4023-4042 | Msa1439900:intron | 50.0% | |
| ! | AGTCCAACGGGTTTGAATCG+TGG | - | tig0028915:4029-4048 | Msa1439900:intergenic | 50.0% |
| CTAGGGCCGAATCAGAATGA+AGG | - | tig0028915:4072-4091 | Msa1439900:intergenic | 50.0% | |
| ATCCCCCAATTAAGCGGCTA+GGG | - | tig0028915:4089-4108 | Msa1439900:intergenic | 50.0% | |
| AATCCCCCAATTAAGCGGCT+AGG | - | tig0028915:4090-4109 | Msa1439900:intergenic | 50.0% | |
| AGCCGCTTAATTGGGGGATT+TGG | + | tig0028915:4090-4109 | Msa1439900:intron | 50.0% | |
| AAGAACAGTGAACGCGTTGG+AGG | - | tig0028915:4139-4158 | Msa1439900:intergenic | 50.0% | |
| TCCAACGCGTTCACTGTTCT+TGG | + | tig0028915:4138-4157 | Msa1439900:intron | 50.0% | |
| CCAACGCGTTCACTGTTCTT+GGG | + | tig0028915:4139-4158 | Msa1439900:intron | 50.0% | |
| TCCCACATCATCCATGCTTC+AGG | + | tig0028915:4163-4182 | Msa1439900:intron | 50.0% | |
| GCCTGAAGCATGGATGATGT+GGG | - | tig0028915:4167-4186 | Msa1439900:intergenic | 50.0% | |
| ATCCATGCTTCAGGCCCATT+GGG | + | tig0028915:4172-4191 | Msa1439900:intron | 50.0% | |
| GAACGTGTTGGAGGTTGCAA+TGG | - | tig0028915:4215-4234 | Msa1439900:intergenic | 50.0% | |
| ACCGCTATAAGGTGTGCATC+TGG | + | tig0028915:4341-4360 | Msa1439900:CDS | 50.0% | |
| TTGACAATTAGGGCACGCTC+TGG | - | tig0028915:4402-4421 | Msa1439900:intergenic | 50.0% | |
| CGACCAGAATAACCGAAGAG+TGG | - | tig0028915:4822-4841 | Msa1439900:intergenic | 50.0% | |
| TCTGGTCGATGACATTCGTC+AGG | + | tig0028915:4834-4853 | Msa1439900:intron | 50.0% | |
| GTCGATGACATTCGTCAGGT+TGG | + | tig0028915:4838-4857 | Msa1439900:intron | 50.0% | |
| TTTCCCACACCACCCTTCTA+TGG | + | tig0028915:5149-5168 | Msa1439900:intron | 50.0% | |
| CTTACCATAGAAGGGTGGTG+TGG | - | tig0028915:5156-5175 | Msa1439900:intergenic | 50.0% | |
| GCCGTCTAATCTCAAATGGG+TGG | - | tig0028915:5787-5806 | Msa1439900:intergenic | 50.0% | |
| TTTCTGTTGGCAAGCAGGCA+AGG | - | tig0028915:6179-6198 | Msa1439900:intergenic | 50.0% | |
| AAGGGTTTCTGTTGGCAAGC+AGG | - | tig0028915:6184-6203 | Msa1439900:intergenic | 50.0% | |
| CTCCAAAGCCCTAATCACAC+AGG | - | tig0028915:6292-6311 | Msa1439900:intergenic | 50.0% | |
| TAGGTAACACAAGAGTGGCC+TGG | + | tig0028915:6637-6656 | Msa1439900:intron | 50.0% | |
| ACTCATCCTCAGCATTTGCC+AGG | + | tig0028915:6805-6824 | Msa1439900:CDS | 50.0% | |
| TATCCACCTGGCAAATGCTG+AGG | - | tig0028915:6814-6833 | Msa1439900:intergenic | 50.0% | |
| CGAAAGCGGCGAAGAATATG+TGG | + | tig0028915:6982-7001 | Msa1439900:CDS | 50.0% | |
| ! | TCTTTCCAGTCTTGTGCCAG+CGG | - | tig0028915:7026-7045 | Msa1439900:intergenic | 50.0% |
| ! | GCACCTTTTCCTCCATTCTC+TGG | - | tig0028915:7114-7133 | Msa1439900:intergenic | 50.0% |
| ACAGAAGAGGATGAGAGGGA+AGG | + | tig0028915:7171-7190 | Msa1439900:CDS | 50.0% | |
| CAGAAGAGGATGAGAGGGAA+GGG | + | tig0028915:7172-7191 | Msa1439900:CDS | 50.0% | |
| CAGCAGCAGCAAGCCATATT+GGG | + | tig0028915:7222-7241 | Msa1439900:CDS | 50.0% | |
| ATAGTTGCTTCCGCGGTTTC+AGG | - | tig0028915:7270-7289 | Msa1439900:intergenic | 50.0% | |
| ! | ACTCCCAATTTTGCGACCAC+TGG | + | tig0028915:7309-7328 | Msa1439900:CDS | 50.0% |
| GGTCCAGTGGTCGCAAAATT+GGG | - | tig0028915:7315-7334 | Msa1439900:intergenic | 50.0% | |
| AGGTCCAGTGGTCGCAAAAT+TGG | - | tig0028915:7316-7335 | Msa1439900:intergenic | 50.0% | |
| ACTGATAAGAGGAGGTCCAG+TGG | - | tig0028915:7328-7347 | Msa1439900:intergenic | 50.0% | |
| CAAGCTCTACATTGCCAGTG+TGG | - | tig0028915:8150-8169 | Msa1439900:intergenic | 50.0% | |
| ! | AGGAGCTATATCGACTAGGG+TGG | + | tig0028915:8320-8339 | Msa1439900:CDS | 50.0% |
| TGCCCCGCATAAGCTACATG+TGG | - | tig0028915:3837-3856 | Msa1439900:intergenic | 55.0% | |
| TTCGGCCCTAGCCGCTTAAT+TGG | + | tig0028915:4081-4100 | Msa1439900:intron | 55.0% | |
| TCGGCCCTAGCCGCTTAATT+GGG | + | tig0028915:4082-4101 | Msa1439900:intron | 55.0% | |
| CCCAAGAACAGTGAACGCGT+TGG | - | tig0028915:4142-4161 | Msa1439900:intergenic | 55.0% | |
| GGCCTGAAGCATGGATGATG+TGG | - | tig0028915:4168-4187 | Msa1439900:intergenic | 55.0% | |
| CATCCATGCTTCAGGCCCAT+TGG | + | tig0028915:4171-4190 | Msa1439900:intron | 55.0% | |
| ATGCAGACCATCGTGGTTGG+TGG | + | tig0028915:4301-4320 | Msa1439900:intron | 55.0% | |
| CTTTGGTCCACCAACCACGA+TGG | - | tig0028915:4311-4330 | Msa1439900:intergenic | 55.0% | |
| CAATTAGGGCACGCTCTGGT+AGG | - | tig0028915:4398-4417 | Msa1439900:intergenic | 55.0% | |
| TGTGTCGCGGTGTCTGACAT+GGG | - | tig0028915:5652-5671 | Msa1439900:intergenic | 55.0% | |
| ATGTGTCGCGGTGTCTGACA+TGG | - | tig0028915:5653-5672 | Msa1439900:intergenic | 55.0% | |
| GAGTGGCCTGGACTTCCTAA+AGG | + | tig0028915:6649-6668 | Msa1439900:CDS | 55.0% | |
| CATCCTCAGCATTTGCCAGG+TGG | + | tig0028915:6808-6827 | Msa1439900:intron | 55.0% | |
| TATGTCCGCTGGCACAAGAC+TGG | + | tig0028915:7018-7037 | Msa1439900:CDS | 55.0% | |
| !! | CCAATATGGCTTGCTGCTGC+TGG | - | tig0028915:7224-7243 | Msa1439900:intergenic | 55.0% |
| CCAGCAGCAGCAAGCCATAT+TGG | + | tig0028915:7221-7240 | Msa1439900:CDS | 55.0% | |
| ! | CCAGTCTCCGAAAAGGCACA+GGG | + | tig0028915:8027-8046 | Msa1439900:CDS | 55.0% |
| CGGCCCTAGCCGCTTAATTG+GGG | + | tig0028915:4083-4102 | Msa1439900:intron | 60.0% | |
| GGCCCTAGCCGCTTAATTGG+GGG | + | tig0028915:4084-4103 | Msa1439900:intron | 60.0% | |
| GCCTCACACTTGGGCCCAAT+GGG | - | tig0028915:4189-4208 | Msa1439900:intergenic | 60.0% | |
| CATTGGGCCCAAGTGTGAGG+CGG | + | tig0028915:4188-4207 | Msa1439900:intron | 60.0% | |
| CAATGGGCCGCCTCACACTT+GGG | - | tig0028915:4198-4217 | Msa1439900:intergenic | 60.0% | |
| ! | GCCAGTCTCCGAAAAGGCAC+AGG | + | tig0028915:8026-8045 | Msa1439900:CDS | 60.0% |
| ! | CCCTGTGCCTTTTCGGAGAC+TGG | - | tig0028915:8030-8049 | Msa1439900:intergenic | 60.0% |
| GGCCCAATGGGCCTGAAGCA+TGG | - | tig0028915:4177-4196 | Msa1439900:intergenic | 65.0% | |
| GCCCATTGGGCCCAAGTGTG+AGG | + | tig0028915:4185-4204 | Msa1439900:intron | 65.0% | |
| CGCCTCACACTTGGGCCCAA+TGG | - | tig0028915:4190-4209 | Msa1439900:intergenic | 65.0% | |
| GCAATGGGCCGCCTCACACT+TGG | - | tig0028915:4199-4218 | Msa1439900:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028915 | gene | 3800 | 8345 | 3800 | ID=Msa1439900;Name=Msa1439900 |
| tig0028915 | mRNA | 3800 | 8345 | 3800 | ID=Msa1439900-mRNA-1;Parent=Msa1439900;Name=Msa1439900-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|0.83|1|0.83|6|0|411 |
| tig0028915 | exon | 3800 | 3825 | 3800 | ID=Msa1439900-mRNA-1:exon:11994;Parent=Msa1439900-mRNA-1 |
| tig0028915 | exon | 4307 | 4442 | 4307 | ID=Msa1439900-mRNA-1:exon:11995;Parent=Msa1439900-mRNA-1 |
| tig0028915 | exon | 6640 | 6826 | 6640 | ID=Msa1439900-mRNA-1:exon:11996;Parent=Msa1439900-mRNA-1 |
| tig0028915 | exon | 6914 | 7392 | 6914 | ID=Msa1439900-mRNA-1:exon:11997;Parent=Msa1439900-mRNA-1 |
| tig0028915 | exon | 7836 | 8204 | 7836 | ID=Msa1439900-mRNA-1:exon:11998;Parent=Msa1439900-mRNA-1 |
| tig0028915 | exon | 8307 | 8345 | 8307 | ID=Msa1439900-mRNA-1:exon:11999;Parent=Msa1439900-mRNA-1 |
| tig0028915 | CDS | 3800 | 3825 | 3800 | ID=Msa1439900-mRNA-1:cds;Parent=Msa1439900-mRNA-1 |
| tig0028915 | CDS | 4307 | 4442 | 4307 | ID=Msa1439900-mRNA-1:cds;Parent=Msa1439900-mRNA-1 |
| tig0028915 | CDS | 6640 | 6826 | 6640 | ID=Msa1439900-mRNA-1:cds;Parent=Msa1439900-mRNA-1 |
| tig0028915 | CDS | 6914 | 7392 | 6914 | ID=Msa1439900-mRNA-1:cds;Parent=Msa1439900-mRNA-1 |
| tig0028915 | CDS | 7836 | 8204 | 7836 | ID=Msa1439900-mRNA-1:cds;Parent=Msa1439900-mRNA-1 |
| tig0028915 | CDS | 8307 | 8345 | 8307 | ID=Msa1439900-mRNA-1:cds;Parent=Msa1439900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
