Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439940 | XP_024636868.1 | 92.879 | 323 | 23 | 0 | 1 | 323 | 1 | 323 | 0.0 | 625 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439940 | sp|Q9XIB4|Y1475_ARATH | 37.931 | 116 | 70 | 2 | 15 | 130 | 34 | 147 | 4.10e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439940 | A0A396IHE6 | 92.879 | 323 | 23 | 0 | 1 | 323 | 1 | 323 | 0.0 | 625 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1439940 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439940 | MtrunA17_Chr4g0067431 | 92.879 | 323 | 23 | 0 | 1 | 323 | 1 | 323 | 0.0 | 625 |
| Msa1439940 | MtrunA17_Chr1g0163221 | 63.609 | 327 | 90 | 7 | 1 | 323 | 1 | 302 | 7.33e-127 | 367 |
| Msa1439940 | MtrunA17_Chr6g0467351 | 64.103 | 234 | 72 | 2 | 1 | 231 | 1 | 225 | 6.37e-104 | 303 |
| Msa1439940 | MtrunA17_Chr1g0163061 | 63.019 | 265 | 52 | 3 | 1 | 219 | 1 | 265 | 2.16e-95 | 283 |
| Msa1439940 | MtrunA17_Chr6g0467361 | 67.816 | 87 | 28 | 0 | 233 | 319 | 8 | 94 | 7.94e-39 | 132 |
| Msa1439940 | MtrunA17_Chr1g0163071 | 29.870 | 308 | 184 | 11 | 31 | 320 | 2 | 295 | 1.99e-34 | 127 |
| Msa1439940 | MtrunA17_Chr3g0131891 | 31.392 | 309 | 187 | 10 | 9 | 311 | 13 | 302 | 1.69e-32 | 123 |
| Msa1439940 | MtrunA17_Chr1g0163131 | 31.746 | 315 | 183 | 13 | 10 | 310 | 13 | 309 | 2.22e-32 | 122 |
| Msa1439940 | MtrunA17_Chr7g0233561 | 29.452 | 292 | 190 | 7 | 13 | 297 | 16 | 298 | 2.77e-32 | 122 |
| Msa1439940 | MtrunA17_Chr8g0390841 | 28.165 | 316 | 206 | 9 | 13 | 320 | 37 | 339 | 1.13e-30 | 121 |
| Msa1439940 | MtrunA17_Chr3g0103181 | 31.373 | 306 | 167 | 11 | 13 | 311 | 10 | 279 | 8.19e-30 | 114 |
| Msa1439940 | MtrunA17_Chr1g0163251 | 30.556 | 288 | 169 | 10 | 15 | 299 | 9 | 268 | 1.94e-29 | 116 |
| Msa1439940 | MtrunA17_Chr1g0208771 | 26.198 | 313 | 202 | 11 | 20 | 319 | 1 | 297 | 3.94e-29 | 116 |
| Msa1439940 | MtrunA17_Chr1g0163261 | 28.920 | 287 | 178 | 9 | 15 | 299 | 9 | 271 | 2.44e-27 | 108 |
| Msa1439940 | MtrunA17_Chr1g0163181 | 29.032 | 310 | 191 | 12 | 17 | 318 | 11 | 299 | 8.03e-27 | 109 |
| Msa1439940 | MtrunA17_Chr3g0103151 | 38.411 | 151 | 85 | 5 | 13 | 158 | 10 | 157 | 4.57e-26 | 101 |
| Msa1439940 | MtrunA17_Chr1g0163231 | 27.393 | 303 | 179 | 10 | 15 | 310 | 9 | 277 | 5.07e-25 | 102 |
| Msa1439940 | MtrunA17_Chr1g0163201 | 28.519 | 270 | 175 | 8 | 30 | 297 | 18 | 271 | 8.59e-25 | 103 |
| Msa1439940 | MtrunA17_Chr3g0103191 | 28.740 | 254 | 152 | 9 | 13 | 264 | 10 | 236 | 2.77e-24 | 99.4 |
| Msa1439940 | MtrunA17_Chr1g0163101 | 33.133 | 166 | 95 | 5 | 10 | 167 | 12 | 169 | 9.91e-24 | 95.9 |
| Msa1439940 | MtrunA17_Chr7g0233571 | 43.925 | 107 | 59 | 1 | 13 | 119 | 8 | 113 | 2.43e-22 | 93.2 |
| Msa1439940 | MtrunA17_Chr3g0103171 | 27.972 | 286 | 177 | 8 | 30 | 311 | 5 | 265 | 1.08e-21 | 92.4 |
| Msa1439940 | MtrunA17_Chr7g0233541 | 27.458 | 295 | 199 | 8 | 31 | 319 | 2 | 287 | 2.33e-21 | 92.0 |
| Msa1439940 | MtrunA17_Chr7g0233521 | 25.850 | 294 | 188 | 7 | 31 | 319 | 2 | 270 | 2.09e-20 | 89.4 |
| Msa1439940 | MtrunA17_Chr1g0163081 | 36.290 | 124 | 68 | 4 | 31 | 147 | 6 | 125 | 4.31e-20 | 85.1 |
| Msa1439940 | MtrunA17_Chr6g0476181 | 33.333 | 162 | 97 | 6 | 31 | 191 | 2 | 153 | 3.90e-19 | 83.2 |
| Msa1439940 | MtrunA17_Chr1g0162161 | 34.722 | 144 | 82 | 5 | 31 | 167 | 4 | 142 | 4.01e-19 | 82.8 |
| Msa1439940 | MtrunA17_Chr1g0171611 | 25.083 | 303 | 174 | 9 | 15 | 310 | 9 | 265 | 6.94e-19 | 85.1 |
| Msa1439940 | MtrunA17_Chr7g0233531 | 27.551 | 294 | 183 | 10 | 31 | 319 | 2 | 270 | 1.28e-18 | 84.3 |
| Msa1439940 | MtrunA17_Chr1g0154131 | 26.606 | 327 | 181 | 14 | 13 | 316 | 182 | 472 | 2.35e-18 | 85.5 |
| Msa1439940 | MtrunA17_Chr1g0163121 | 33.333 | 129 | 75 | 4 | 29 | 150 | 9 | 133 | 3.61e-18 | 79.7 |
| Msa1439940 | MtrunA17_Chr5g0419201 | 30.519 | 154 | 97 | 3 | 15 | 160 | 16 | 167 | 6.55e-18 | 80.5 |
| Msa1439940 | MtrunA17_Chr1g0163191 | 37.815 | 119 | 66 | 4 | 15 | 132 | 9 | 120 | 2.74e-16 | 75.1 |
| Msa1439940 | MtrunA17_Chr1g0163241 | 35.099 | 151 | 75 | 5 | 15 | 153 | 15 | 154 | 6.38e-16 | 74.3 |
| Msa1439940 | MtrunA17_Chr1g0154151 | 27.097 | 310 | 177 | 12 | 16 | 297 | 13 | 301 | 8.01e-16 | 77.0 |
| Msa1439940 | MtrunA17_Chr1g0163141 | 31.056 | 161 | 96 | 5 | 29 | 183 | 9 | 160 | 4.18e-15 | 72.4 |
| Msa1439940 | MtrunA17_Chr5g0429931 | 27.273 | 275 | 151 | 11 | 30 | 304 | 10 | 235 | 5.75e-15 | 73.6 |
| Msa1439940 | MtrunA17_Chr3g0103201 | 27.572 | 243 | 145 | 9 | 74 | 311 | 4 | 220 | 6.86e-14 | 69.7 |
| Msa1439940 | MtrunA17_Chr3g0077461 | 31.977 | 172 | 103 | 6 | 14 | 174 | 236 | 404 | 1.27e-13 | 71.2 |
| Msa1439940 | MtrunA17_Chr1g0154191 | 26.190 | 336 | 179 | 14 | 16 | 297 | 22 | 342 | 3.94e-13 | 69.3 |
| Msa1439940 | MtrunA17_Chr1g0154171 | 25.076 | 327 | 193 | 11 | 28 | 316 | 35 | 347 | 6.48e-13 | 68.6 |
| Msa1439940 | MtrunA17_Chr3g0077411 | 25.329 | 304 | 169 | 12 | 1 | 297 | 251 | 503 | 9.03e-13 | 68.9 |
| Msa1439940 | MtrunA17_Chr3g0077411 | 23.373 | 338 | 210 | 10 | 14 | 311 | 24 | 352 | 8.56e-12 | 65.9 |
| Msa1439940 | MtrunA17_Chr3g0077451 | 24.354 | 271 | 147 | 10 | 29 | 299 | 10 | 222 | 1.19e-12 | 66.6 |
| Msa1439940 | MtrunA17_Chr1g0154111 | 23.864 | 352 | 202 | 17 | 16 | 316 | 26 | 362 | 1.33e-12 | 68.6 |
| Msa1439940 | MtrunA17_Chr1g0163161 | 40.426 | 94 | 46 | 4 | 43 | 130 | 1 | 90 | 1.36e-12 | 64.3 |
| Msa1439940 | MtrunA17_Chr4g0033961 | 31.343 | 134 | 79 | 4 | 15 | 137 | 6 | 137 | 6.95e-12 | 65.9 |
| Msa1439940 | MtrunA17_Chr1g0154161 | 24.830 | 294 | 186 | 12 | 13 | 297 | 28 | 295 | 1.84e-11 | 64.3 |
| Msa1439940 | MtrunA17_Chr4g0009491 | 25.197 | 254 | 137 | 8 | 14 | 266 | 224 | 425 | 1.93e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439940 | AT1G49475.1 | 37.931 | 116 | 70 | 2 | 15 | 130 | 34 | 147 | 4.17e-17 | 78.6 |
| Msa1439940 | AT3G18990.1 | 25.225 | 333 | 197 | 11 | 15 | 304 | 6 | 329 | 3.72e-15 | 75.5 |
| Msa1439940 | AT3G18960.1 | 33.333 | 102 | 67 | 1 | 15 | 116 | 30 | 130 | 5.10e-15 | 73.2 |
| Msa1439940 | AT3G18990.2 | 25.225 | 333 | 197 | 11 | 15 | 304 | 6 | 329 | 5.33e-15 | 75.5 |
| Msa1439940 | AT3G18960.2 | 33.333 | 102 | 67 | 1 | 15 | 116 | 30 | 130 | 5.98e-15 | 72.8 |
| Msa1439940 | AT4G01580.1 | 30.392 | 102 | 70 | 1 | 15 | 116 | 30 | 130 | 1.25e-13 | 68.9 |
| Msa1439940 | AT3G18960.3 | 34.409 | 93 | 60 | 1 | 24 | 116 | 2 | 93 | 4.34e-12 | 63.9 |
Find 43 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGAAACCTTCCATGTTCT+TGG | 0.201035 | tig0028916:+6912 | None:intergenic |
| ATCTGTCTTGATCAACAAAA+AGG | 0.205245 | tig0028916:+6070 | None:intergenic |
| CTTTCTTAATGTATGTCTTT+TGG | 0.214595 | tig0028916:+6651 | None:intergenic |
| ATTTGCAAAATATTTGTCTT+TGG | 0.222298 | tig0028916:-7203 | Msa1439940:CDS |
| TTTGGAAGTCTTAGAGTAAC+TGG | 0.261520 | tig0028916:+7298 | None:intergenic |
| GTTTCATAACTTCAAGGATT+TGG | 0.272565 | tig0028916:-6897 | Msa1439940:CDS |
| GCTCACAATAATTTGAAGTT+TGG | 0.297385 | tig0028916:-5976 | Msa1439940:CDS |
| CTTCATCATCGAAGGGTAAA+AGG | 0.299202 | tig0028916:-7018 | Msa1439940:CDS |
| AATAAGTCACCTTCAAAATA+AGG | 0.303259 | tig0028916:+5865 | None:intergenic |
| TTTGCAAAATATTTGTCTTT+GGG | 0.324072 | tig0028916:-7202 | Msa1439940:CDS |
| AAACTAGTGATTATAATGTT+TGG | 0.368567 | tig0028916:-7246 | Msa1439940:CDS |
| GAACCTTAATGAAGGAAAAC+TGG | 0.378032 | tig0028916:-7658 | Msa1439940:intron |
| TTGTTGATCAAGACAGATCA+TGG | 0.419506 | tig0028916:-6065 | Msa1439940:CDS |
| AAGTGGTTGTGATGATCTTA+AGG | 0.427796 | tig0028916:-6747 | Msa1439940:CDS |
| CCAGAGAGAAAATCTTAACT+TGG | 0.431915 | tig0028916:+5905 | None:intergenic |
| TCCAAATATGACCGAAAAGA+AGG | 0.438663 | tig0028916:-7281 | Msa1439940:CDS |
| AATGCCTTCTCACAAAACTT+AGG | 0.445086 | tig0028916:+7338 | None:intergenic |
| ATACATTAAGAAAGATATCT+TGG | 0.449671 | tig0028916:-6642 | Msa1439940:intron |
| TGTTTCTTAGCAAATTCAAT+TGG | 0.465793 | tig0028916:+6123 | None:intergenic |
| ATGCCTTCTCACAAAACTTA+GGG | 0.471997 | tig0028916:+7339 | None:intergenic |
| CTTCAAAGGAACCTTAATGA+AGG | 0.492605 | tig0028916:-7666 | Msa1439940:CDS |
| TGGAAGGTTTCATAACTTCA+AGG | 0.502505 | tig0028916:-6903 | Msa1439940:CDS |
| AACTTCAAGGATTTGGACAA+TGG | 0.526857 | tig0028916:-6890 | Msa1439940:intron |
| TGAAGATCCTTCATCATCGA+AGG | 0.533226 | tig0028916:-7026 | Msa1439940:CDS |
| AAGAGAAAAGTCCAAGAACA+TGG | 0.537786 | tig0028916:-6923 | Msa1439940:CDS |
| AATATACACTAAGTGGTGGT+TGG | 0.538952 | tig0028916:-6011 | Msa1439940:CDS |
| TTCATCTTCTTAAAATAAGG+TGG | 0.542267 | tig0028916:+6983 | None:intergenic |
| GAACTTGATCATCGGAGTAA+TGG | 0.546118 | tig0028916:-7711 | Msa1439940:CDS |
| TTGCTAAGAAACATCTGCAC+AGG | 0.549108 | tig0028916:-6113 | Msa1439940:CDS |
| AATAATCAATATACACTAAG+TGG | 0.551699 | tig0028916:-6018 | Msa1439940:CDS |
| AAACATCTGCACAGGATGGA+AGG | 0.560035 | tig0028916:-6105 | Msa1439940:CDS |
| CTCTTCAATGTGATTGTATG+CGG | 0.570958 | tig0028916:-7139 | Msa1439940:CDS |
| TTTATGCTGAACAAATGCAA+AGG | 0.583910 | tig0028916:-5940 | Msa1439940:CDS |
| GAAAAGTCCAAGAACATGGA+AGG | 0.592531 | tig0028916:-6919 | Msa1439940:CDS |
| CTTCTAAAGAACTTGATCAT+CGG | 0.594078 | tig0028916:-7719 | Msa1439940:CDS |
| GAAGATCCTTCATCATCGAA+GGG | 0.615664 | tig0028916:-7025 | Msa1439940:CDS |
| AACTAACGAAGAATATGAAG+AGG | 0.623129 | tig0028916:-7080 | Msa1439940:CDS |
| TTTGTGAGAAGGCATTGGCA+AGG | 0.630866 | tig0028916:-7331 | Msa1439940:CDS |
| CGAAGAAATCCTTATCAGAG+TGG | 0.639902 | tig0028916:+6684 | None:intergenic |
| TAAGAAACATCTGCACAGGA+TGG | 0.647638 | tig0028916:-6109 | Msa1439940:CDS |
| AATCAATATACACTAAGTGG+TGG | 0.647702 | tig0028916:-6015 | Msa1439940:CDS |
| TGCCTTCTCACAAAACTTAG+GGG | 0.659933 | tig0028916:+7340 | None:intergenic |
| GTGATTGTATGCGGTAAATG+CGG | 0.696593 | tig0028916:-7130 | Msa1439940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATTAATTGCAAAATT+AGG | - | tig0028916:5998-6017 | Msa1439940:CDS | 10.0% |
| !! | AAATATTAATTGCAAAATTA+GGG | - | tig0028916:5999-6018 | Msa1439940:CDS | 10.0% |
| !!! | ATTTTTTCATCTTATTTTTT+AGG | - | tig0028916:6776-6795 | Msa1439940:intron | 10.0% |
| !! | TAAGAAATAATATAACAAAA+TGG | + | tig0028916:7260-7279 | None:intergenic | 10.0% |
| !! | TAAATATTAATTGCAAAATT+AGG | - | tig0028916:5998-6017 | Msa1439940:CDS | 10.0% |
| !! | AAATATTAATTGCAAAATTA+GGG | - | tig0028916:5999-6018 | Msa1439940:CDS | 10.0% |
| !!! | ATTTTTTCATCTTATTTTTT+AGG | - | tig0028916:6776-6795 | Msa1439940:intron | 10.0% |
| !! | TAAGAAATAATATAACAAAA+TGG | + | tig0028916:7260-7279 | None:intergenic | 10.0% |
| !!! | ATTTTCATCTTCTTAAAATA+AGG | + | tig0028916:6622-6641 | None:intergenic | 15.0% |
| !! | TATGAATGTTAAAAAAACAA+TGG | - | tig0028916:7035-7054 | Msa1439940:CDS | 15.0% |
| !!! | GTTATATTATTTCTTAGAAT+TGG | - | tig0028916:7264-7283 | Msa1439940:CDS | 15.0% |
| !!! | TAAAAACAATGATCTAAAAT+AGG | - | tig0028916:7448-7467 | Msa1439940:intron | 15.0% |
| !!! | AAAAACAATGATCTAAAATA+GGG | - | tig0028916:7449-7468 | Msa1439940:intron | 15.0% |
| !!! | ATTTTCATCTTCTTAAAATA+AGG | + | tig0028916:6622-6641 | None:intergenic | 15.0% |
| !! | TATGAATGTTAAAAAAACAA+TGG | - | tig0028916:7035-7054 | Msa1439940:CDS | 15.0% |
| !!! | GTTATATTATTTCTTAGAAT+TGG | - | tig0028916:7264-7283 | Msa1439940:CDS | 15.0% |
| !!! | TAAAAACAATGATCTAAAAT+AGG | - | tig0028916:7448-7467 | Msa1439940:intron | 15.0% |
| !!! | AAAAACAATGATCTAAAATA+GGG | - | tig0028916:7449-7468 | Msa1439940:intron | 15.0% |
| !!! | TTTTCAAGATTATTCTTCAA+AGG | - | tig0028916:5919-5938 | Msa1439940:CDS | 20.0% |
| !! | AATTAGGGCTATAAATTAAT+CGG | - | tig0028916:6014-6033 | Msa1439940:CDS | 20.0% |
| !! | AAACTAGTGATTATAATGTT+TGG | - | tig0028916:6353-6372 | Msa1439940:intron | 20.0% |
| !! | ATTTGCAAAATATTTGTCTT+TGG | - | tig0028916:6396-6415 | Msa1439940:intron | 20.0% |
| !! | TTTGCAAAATATTTGTCTTT+GGG | - | tig0028916:6397-6416 | Msa1439940:intron | 20.0% |
| !!! | TCTTCGTTAGTTTTTTTTAA+AGG | + | tig0028916:6511-6530 | None:intergenic | 20.0% |
| !! | ATACATTAAGAAAGATATCT+TGG | - | tig0028916:6957-6976 | Msa1439940:CDS | 20.0% |
| !! | ACATTATAGCATAACTTTAT+TGG | + | tig0028916:7150-7169 | None:intergenic | 20.0% |
| !!! | TCATTTTGTATACTATTTCT+TGG | - | tig0028916:7169-7188 | Msa1439940:CDS | 20.0% |
| !! | AATAATCAATATACACTAAG+TGG | - | tig0028916:7581-7600 | Msa1439940:intron | 20.0% |
| !!! | TTTTCAAGATTATTCTTCAA+AGG | - | tig0028916:5919-5938 | Msa1439940:CDS | 20.0% |
| !! | AATTAGGGCTATAAATTAAT+CGG | - | tig0028916:6014-6033 | Msa1439940:CDS | 20.0% |
| !! | AAACTAGTGATTATAATGTT+TGG | - | tig0028916:6353-6372 | Msa1439940:intron | 20.0% |
| !! | ATTTGCAAAATATTTGTCTT+TGG | - | tig0028916:6396-6415 | Msa1439940:intron | 20.0% |
| !! | TTTGCAAAATATTTGTCTTT+GGG | - | tig0028916:6397-6416 | Msa1439940:intron | 20.0% |
| !!! | TCTTCGTTAGTTTTTTTTAA+AGG | + | tig0028916:6511-6530 | None:intergenic | 20.0% |
| !! | ATACATTAAGAAAGATATCT+TGG | - | tig0028916:6957-6976 | Msa1439940:CDS | 20.0% |
| !! | ACATTATAGCATAACTTTAT+TGG | + | tig0028916:7150-7169 | None:intergenic | 20.0% |
| !!! | TCATTTTGTATACTATTTCT+TGG | - | tig0028916:7169-7188 | Msa1439940:CDS | 20.0% |
| !! | AATAATCAATATACACTAAG+TGG | - | tig0028916:7581-7600 | Msa1439940:intron | 20.0% |
| ! | GAAGAATAATCTTGAAAAAG+TGG | + | tig0028916:5917-5936 | None:intergenic | 25.0% |
| !!! | TATAATGTTTGGTTTTGCAA+TGG | - | tig0028916:6364-6383 | Msa1439940:intron | 25.0% |
| ! | TTCATCTTCTTAAAATAAGG+TGG | + | tig0028916:6619-6638 | None:intergenic | 25.0% |
| !! | CTTTCTTAATGTATGTCTTT+TGG | + | tig0028916:6951-6970 | None:intergenic | 25.0% |
| ! | GCATTATAGTATAACTTTAG+TGG | + | tig0028916:7238-7257 | None:intergenic | 25.0% |
| ! | ACAAATACAAAAAGGCTAAA+TGG | + | tig0028916:7397-7416 | None:intergenic | 25.0% |
| ! | ACTCAGAAACAAATACAAAA+AGG | + | tig0028916:7405-7424 | None:intergenic | 25.0% |
| ! | TGTTTCTTAGCAAATTCAAT+TGG | + | tig0028916:7479-7498 | None:intergenic | 25.0% |
| ! | GAAGAATAATCTTGAAAAAG+TGG | + | tig0028916:5917-5936 | None:intergenic | 25.0% |
| !!! | TATAATGTTTGGTTTTGCAA+TGG | - | tig0028916:6364-6383 | Msa1439940:intron | 25.0% |
| ! | TTCATCTTCTTAAAATAAGG+TGG | + | tig0028916:6619-6638 | None:intergenic | 25.0% |
| !! | CTTTCTTAATGTATGTCTTT+TGG | + | tig0028916:6951-6970 | None:intergenic | 25.0% |
| ! | GCATTATAGTATAACTTTAG+TGG | + | tig0028916:7238-7257 | None:intergenic | 25.0% |
| ! | ACAAATACAAAAAGGCTAAA+TGG | + | tig0028916:7397-7416 | None:intergenic | 25.0% |
| ! | ACTCAGAAACAAATACAAAA+AGG | + | tig0028916:7405-7424 | None:intergenic | 25.0% |
| ! | TGTTTCTTAGCAAATTCAAT+TGG | + | tig0028916:7479-7498 | None:intergenic | 25.0% |
| ! | CTTCTAAAGAACTTGATCAT+CGG | - | tig0028916:5880-5899 | Msa1439940:CDS | 30.0% |
| ! | TTACCAGTTTTCCTTCATTA+AGG | + | tig0028916:5947-5966 | None:intergenic | 30.0% |
| AACTAACGAAGAATATGAAG+AGG | - | tig0028916:6519-6538 | Msa1439940:intron | 30.0% | |
| GTTTCATAACTTCAAGGATT+TGG | - | tig0028916:6702-6721 | Msa1439940:CDS | 30.0% | |
| ATTCTCAAATTCTCAGTAAG+TGG | - | tig0028916:6835-6854 | Msa1439940:intron | 30.0% | |
| !!! | GAATTTTTTCCACTCTGATA+AGG | - | tig0028916:6906-6925 | Msa1439940:CDS | 30.0% |
| TCTGTCTTGATCAACAAAAA+GGG | + | tig0028916:7531-7550 | None:intergenic | 30.0% | |
| ATCTGTCTTGATCAACAAAA+AGG | + | tig0028916:7532-7551 | None:intergenic | 30.0% | |
| AATCAATATACACTAAGTGG+TGG | - | tig0028916:7584-7603 | Msa1439940:intron | 30.0% | |
| ! | GCTCACAATAATTTGAAGTT+TGG | - | tig0028916:7623-7642 | Msa1439940:intron | 30.0% |
| TTTATGCTGAACAAATGCAA+AGG | - | tig0028916:7659-7678 | Msa1439940:CDS | 30.0% | |
| ! | CTTCTAAAGAACTTGATCAT+CGG | - | tig0028916:5880-5899 | Msa1439940:CDS | 30.0% |
| ! | TTACCAGTTTTCCTTCATTA+AGG | + | tig0028916:5947-5966 | None:intergenic | 30.0% |
| AACTAACGAAGAATATGAAG+AGG | - | tig0028916:6519-6538 | Msa1439940:intron | 30.0% | |
| GTTTCATAACTTCAAGGATT+TGG | - | tig0028916:6702-6721 | Msa1439940:CDS | 30.0% | |
| ATTCTCAAATTCTCAGTAAG+TGG | - | tig0028916:6835-6854 | Msa1439940:intron | 30.0% | |
| !!! | GAATTTTTTCCACTCTGATA+AGG | - | tig0028916:6906-6925 | Msa1439940:CDS | 30.0% |
| TCTGTCTTGATCAACAAAAA+GGG | + | tig0028916:7531-7550 | None:intergenic | 30.0% | |
| ATCTGTCTTGATCAACAAAA+AGG | + | tig0028916:7532-7551 | None:intergenic | 30.0% | |
| AATCAATATACACTAAGTGG+TGG | - | tig0028916:7584-7603 | Msa1439940:intron | 30.0% | |
| ! | GCTCACAATAATTTGAAGTT+TGG | - | tig0028916:7623-7642 | Msa1439940:intron | 30.0% |
| TTTATGCTGAACAAATGCAA+AGG | - | tig0028916:7659-7678 | Msa1439940:CDS | 30.0% | |
| CTTCAAAGGAACCTTAATGA+AGG | - | tig0028916:5933-5952 | Msa1439940:CDS | 35.0% | |
| GAACCTTAATGAAGGAAAAC+TGG | - | tig0028916:5941-5960 | Msa1439940:CDS | 35.0% | |
| ! | GAAATCTAGTTTACGACCTT+TGG | - | tig0028916:6038-6057 | Msa1439940:CDS | 35.0% |
| ATGCCTTCTCACAAAACTTA+GGG | + | tig0028916:6263-6282 | None:intergenic | 35.0% | |
| AATGCCTTCTCACAAAACTT+AGG | + | tig0028916:6264-6283 | None:intergenic | 35.0% | |
| !! | TAAGTTTTGTGAGAAGGCAT+TGG | - | tig0028916:6263-6282 | Msa1439940:intron | 35.0% |
| TTTGGAAGTCTTAGAGTAAC+TGG | + | tig0028916:6304-6323 | None:intergenic | 35.0% | |
| TCCAAATATGACCGAAAAGA+AGG | - | tig0028916:6318-6337 | Msa1439940:intron | 35.0% | |
| ! | ACCTTCTTTTCGGTCATATT+TGG | + | tig0028916:6322-6341 | None:intergenic | 35.0% |
| !!! | TGACCGAAAAGAAGGTTTTT+TGG | - | tig0028916:6326-6345 | Msa1439940:intron | 35.0% |
| !!! | GACCGAAAAGAAGGTTTTTT+GGG | - | tig0028916:6327-6346 | Msa1439940:intron | 35.0% |
| ! | CTCCCAAAAAACCTTCTTTT+CGG | + | tig0028916:6332-6351 | None:intergenic | 35.0% |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | - | tig0028916:6368-6387 | Msa1439940:intron | 35.0% |
| CTCTTCAATGTGATTGTATG+CGG | - | tig0028916:6460-6479 | Msa1439940:intron | 35.0% | |
| AAGAGAAAAGTCCAAGAACA+TGG | - | tig0028916:6676-6695 | Msa1439940:CDS | 35.0% | |
| TATGAAACCTTCCATGTTCT+TGG | + | tig0028916:6690-6709 | None:intergenic | 35.0% | |
| TGGAAGGTTTCATAACTTCA+AGG | - | tig0028916:6696-6715 | Msa1439940:CDS | 35.0% | |
| AACTTCAAGGATTTGGACAA+TGG | - | tig0028916:6709-6728 | Msa1439940:CDS | 35.0% | |
| AAGTGGTTGTGATGATCTTA+AGG | - | tig0028916:6852-6871 | Msa1439940:intron | 35.0% | |
| TTGTTGATCAAGACAGATCA+TGG | - | tig0028916:7534-7553 | Msa1439940:intron | 35.0% | |
| AATATACACTAAGTGGTGGT+TGG | - | tig0028916:7588-7607 | Msa1439940:intron | 35.0% | |
| CCAGAGAGAAAATCTTAACT+TGG | + | tig0028916:7697-7716 | None:intergenic | 35.0% | |
| ! | CCAAGTTAAGATTTTCTCTC+TGG | - | tig0028916:7694-7713 | Msa1439940:CDS | 35.0% |
| CTTCAAAGGAACCTTAATGA+AGG | - | tig0028916:5933-5952 | Msa1439940:CDS | 35.0% | |
| GAACCTTAATGAAGGAAAAC+TGG | - | tig0028916:5941-5960 | Msa1439940:CDS | 35.0% | |
| ! | GAAATCTAGTTTACGACCTT+TGG | - | tig0028916:6038-6057 | Msa1439940:CDS | 35.0% |
| ATGCCTTCTCACAAAACTTA+GGG | + | tig0028916:6263-6282 | None:intergenic | 35.0% | |
| AATGCCTTCTCACAAAACTT+AGG | + | tig0028916:6264-6283 | None:intergenic | 35.0% | |
| !! | TAAGTTTTGTGAGAAGGCAT+TGG | - | tig0028916:6263-6282 | Msa1439940:intron | 35.0% |
| TTTGGAAGTCTTAGAGTAAC+TGG | + | tig0028916:6304-6323 | None:intergenic | 35.0% | |
| TCCAAATATGACCGAAAAGA+AGG | - | tig0028916:6318-6337 | Msa1439940:intron | 35.0% | |
| ! | ACCTTCTTTTCGGTCATATT+TGG | + | tig0028916:6322-6341 | None:intergenic | 35.0% |
| !!! | TGACCGAAAAGAAGGTTTTT+TGG | - | tig0028916:6326-6345 | Msa1439940:intron | 35.0% |
| !!! | GACCGAAAAGAAGGTTTTTT+GGG | - | tig0028916:6327-6346 | Msa1439940:intron | 35.0% |
| ! | CTCCCAAAAAACCTTCTTTT+CGG | + | tig0028916:6332-6351 | None:intergenic | 35.0% |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | - | tig0028916:6368-6387 | Msa1439940:intron | 35.0% |
| CTCTTCAATGTGATTGTATG+CGG | - | tig0028916:6460-6479 | Msa1439940:intron | 35.0% | |
| AAGAGAAAAGTCCAAGAACA+TGG | - | tig0028916:6676-6695 | Msa1439940:CDS | 35.0% | |
| TATGAAACCTTCCATGTTCT+TGG | + | tig0028916:6690-6709 | None:intergenic | 35.0% | |
| TGGAAGGTTTCATAACTTCA+AGG | - | tig0028916:6696-6715 | Msa1439940:CDS | 35.0% | |
| AACTTCAAGGATTTGGACAA+TGG | - | tig0028916:6709-6728 | Msa1439940:CDS | 35.0% | |
| AAGTGGTTGTGATGATCTTA+AGG | - | tig0028916:6852-6871 | Msa1439940:intron | 35.0% | |
| TTGTTGATCAAGACAGATCA+TGG | - | tig0028916:7534-7553 | Msa1439940:intron | 35.0% | |
| AATATACACTAAGTGGTGGT+TGG | - | tig0028916:7588-7607 | Msa1439940:intron | 35.0% | |
| CCAGAGAGAAAATCTTAACT+TGG | + | tig0028916:7697-7716 | None:intergenic | 35.0% | |
| ! | CCAAGTTAAGATTTTCTCTC+TGG | - | tig0028916:7694-7713 | Msa1439940:CDS | 35.0% |
| GAACTTGATCATCGGAGTAA+TGG | - | tig0028916:5888-5907 | Msa1439940:CDS | 40.0% | |
| TGCCTTCTCACAAAACTTAG+GGG | + | tig0028916:6262-6281 | None:intergenic | 40.0% | |
| GTGATTGTATGCGGTAAATG+CGG | - | tig0028916:6469-6488 | Msa1439940:intron | 40.0% | |
| TGAAGATCCTTCATCATCGA+AGG | - | tig0028916:6573-6592 | Msa1439940:intron | 40.0% | |
| GAAGATCCTTCATCATCGAA+GGG | - | tig0028916:6574-6593 | Msa1439940:intron | 40.0% | |
| ! | CTTTTACCCTTCGATGATGA+AGG | + | tig0028916:6583-6602 | None:intergenic | 40.0% |
| CTTCATCATCGAAGGGTAAA+AGG | - | tig0028916:6581-6600 | Msa1439940:intron | 40.0% | |
| GAAAAGTCCAAGAACATGGA+AGG | - | tig0028916:6680-6699 | Msa1439940:CDS | 40.0% | |
| TCAAGGATTTGGACAATGGT+TGG | - | tig0028916:6713-6732 | Msa1439940:CDS | 40.0% | |
| CGAAGAAATCCTTATCAGAG+TGG | + | tig0028916:6918-6937 | None:intergenic | 40.0% | |
| TTGCTAAGAAACATCTGCAC+AGG | - | tig0028916:7486-7505 | Msa1439940:intron | 40.0% | |
| TAAGAAACATCTGCACAGGA+TGG | - | tig0028916:7490-7509 | Msa1439940:intron | 40.0% | |
| GAACTTGATCATCGGAGTAA+TGG | - | tig0028916:5888-5907 | Msa1439940:CDS | 40.0% | |
| TGCCTTCTCACAAAACTTAG+GGG | + | tig0028916:6262-6281 | None:intergenic | 40.0% | |
| GTGATTGTATGCGGTAAATG+CGG | - | tig0028916:6469-6488 | Msa1439940:intron | 40.0% | |
| TGAAGATCCTTCATCATCGA+AGG | - | tig0028916:6573-6592 | Msa1439940:intron | 40.0% | |
| GAAGATCCTTCATCATCGAA+GGG | - | tig0028916:6574-6593 | Msa1439940:intron | 40.0% | |
| ! | CTTTTACCCTTCGATGATGA+AGG | + | tig0028916:6583-6602 | None:intergenic | 40.0% |
| CTTCATCATCGAAGGGTAAA+AGG | - | tig0028916:6581-6600 | Msa1439940:intron | 40.0% | |
| GAAAAGTCCAAGAACATGGA+AGG | - | tig0028916:6680-6699 | Msa1439940:CDS | 40.0% | |
| TCAAGGATTTGGACAATGGT+TGG | - | tig0028916:6713-6732 | Msa1439940:CDS | 40.0% | |
| CGAAGAAATCCTTATCAGAG+TGG | + | tig0028916:6918-6937 | None:intergenic | 40.0% | |
| TTGCTAAGAAACATCTGCAC+AGG | - | tig0028916:7486-7505 | Msa1439940:intron | 40.0% | |
| TAAGAAACATCTGCACAGGA+TGG | - | tig0028916:7490-7509 | Msa1439940:intron | 40.0% | |
| !! | GTTTACGACCTTTGGAGTGT+AGG | - | tig0028916:6046-6065 | Msa1439940:CDS | 45.0% |
| CTCATTCACCTACACTCCAA+AGG | + | tig0028916:6057-6076 | None:intergenic | 45.0% | |
| GGAGTGTAGGTGAATGAGTA+AGG | - | tig0028916:6059-6078 | Msa1439940:CDS | 45.0% | |
| !! | TGCCCCTAAGTTTTGTGAGA+AGG | - | tig0028916:6257-6276 | Msa1439940:intron | 45.0% |
| !! | TTTGTGAGAAGGCATTGGCA+AGG | - | tig0028916:6268-6287 | Msa1439940:intron | 45.0% |
| AAACATCTGCACAGGATGGA+AGG | - | tig0028916:7494-7513 | Msa1439940:intron | 45.0% | |
| !! | GTTTACGACCTTTGGAGTGT+AGG | - | tig0028916:6046-6065 | Msa1439940:CDS | 45.0% |
| CTCATTCACCTACACTCCAA+AGG | + | tig0028916:6057-6076 | None:intergenic | 45.0% | |
| GGAGTGTAGGTGAATGAGTA+AGG | - | tig0028916:6059-6078 | Msa1439940:CDS | 45.0% | |
| !! | TGCCCCTAAGTTTTGTGAGA+AGG | - | tig0028916:6257-6276 | Msa1439940:intron | 45.0% |
| !! | TTTGTGAGAAGGCATTGGCA+AGG | - | tig0028916:6268-6287 | Msa1439940:intron | 45.0% |
| AAACATCTGCACAGGATGGA+AGG | - | tig0028916:7494-7513 | Msa1439940:intron | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028916 | gene | 5876 | 7745 | 5876 | ID=Msa1439940;Name=Msa1439940 |
| tig0028916 | mRNA | 5876 | 7745 | 5876 | ID=Msa1439940-mRNA-1;Parent=Msa1439940;Name=Msa1439940-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|0.75|4|0|323 |
| tig0028916 | exon | 7659 | 7745 | 7659 | ID=Msa1439940-mRNA-1:exon:12024;Parent=Msa1439940-mRNA-1 |
| tig0028916 | exon | 6891 | 7368 | 6891 | ID=Msa1439940-mRNA-1:exon:12023;Parent=Msa1439940-mRNA-1 |
| tig0028916 | exon | 6643 | 6770 | 6643 | ID=Msa1439940-mRNA-1:exon:12022;Parent=Msa1439940-mRNA-1 |
| tig0028916 | exon | 5876 | 6151 | 5876 | ID=Msa1439940-mRNA-1:exon:12021;Parent=Msa1439940-mRNA-1 |
| tig0028916 | CDS | 7659 | 7745 | 7659 | ID=Msa1439940-mRNA-1:cds;Parent=Msa1439940-mRNA-1 |
| tig0028916 | CDS | 6891 | 7368 | 6891 | ID=Msa1439940-mRNA-1:cds;Parent=Msa1439940-mRNA-1 |
| tig0028916 | CDS | 6643 | 6770 | 6643 | ID=Msa1439940-mRNA-1:cds;Parent=Msa1439940-mRNA-1 |
| tig0028916 | CDS | 5876 | 6151 | 5876 | ID=Msa1439940-mRNA-1:cds;Parent=Msa1439940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
