Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440230 | sp|Q9M886|LBD41_ARATH | 40.529 | 227 | 122 | 5 | 1 | 225 | 1 | 216 | 2.75e-52 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440230 | G7ZZB8 | 95.671 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 1.82e-163 | 460 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1440230 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440230 | MtrunA17_Chr6g0469271 | 93.939 | 231 | 14 | 0 | 1 | 231 | 1 | 231 | 1.40e-164 | 453 |
| Msa1440230 | MtrunA17_Chr6g0470631 | 90.476 | 231 | 22 | 0 | 1 | 231 | 1 | 231 | 1.86e-158 | 438 |
| Msa1440230 | MtrunA17_Chr6g0470651 | 88.745 | 231 | 26 | 0 | 1 | 231 | 1 | 231 | 2.34e-156 | 432 |
| Msa1440230 | MtrunA17_Chr1g0209841 | 91.342 | 231 | 10 | 1 | 1 | 231 | 1 | 221 | 2.44e-156 | 432 |
| Msa1440230 | MtrunA17_Chr6g0457431 | 55.422 | 166 | 56 | 6 | 1 | 160 | 1 | 154 | 4.58e-60 | 186 |
| Msa1440230 | MtrunA17_Chr7g0215281 | 44.053 | 227 | 109 | 7 | 1 | 223 | 1 | 213 | 8.42e-56 | 180 |
| Msa1440230 | MtrunA17_Chr4g0053911 | 56.303 | 119 | 48 | 2 | 3 | 119 | 1 | 117 | 1.65e-46 | 154 |
| Msa1440230 | MtrunA17_Chr5g0401401 | 44.970 | 169 | 82 | 5 | 3 | 165 | 1 | 164 | 5.49e-45 | 150 |
| Msa1440230 | MtrunA17_Chr1g0207471 | 44.882 | 127 | 63 | 2 | 3 | 124 | 1 | 125 | 7.99e-36 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440230 | AT3G02550.1 | 40.529 | 227 | 122 | 5 | 1 | 225 | 1 | 216 | 2.80e-53 | 172 |
| Msa1440230 | AT1G68510.1 | 55.102 | 147 | 54 | 3 | 1 | 145 | 1 | 137 | 3.07e-53 | 171 |
| Msa1440230 | AT1G67100.1 | 54.861 | 144 | 57 | 3 | 1 | 144 | 1 | 136 | 5.96e-50 | 163 |
| Msa1440230 | AT3G49940.1 | 53.659 | 123 | 55 | 1 | 3 | 125 | 1 | 121 | 1.41e-45 | 152 |
| Msa1440230 | AT5G67420.2 | 55.963 | 109 | 46 | 1 | 3 | 111 | 1 | 107 | 1.14e-43 | 147 |
| Msa1440230 | AT5G67420.1 | 55.963 | 109 | 46 | 1 | 3 | 111 | 1 | 107 | 1.14e-43 | 147 |
| Msa1440230 | AT4G37540.1 | 57.798 | 109 | 44 | 1 | 3 | 111 | 1 | 107 | 1.50e-43 | 147 |
Find 62 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCATGCCCTTGGGATTC+AGG | 0.157225 | tig0029039:+11278 | None:intergenic |
| ATGGGGCGCTTGGCTTATTT+TGG | 0.165756 | tig0029039:-10799 | Msa1440230:CDS |
| AAGAATACCAACATGGAAAT+TGG | 0.166066 | tig0029039:-10500 | Msa1440230:CDS |
| ACCGGTTCGGCCATAAAATT+TGG | 0.172606 | tig0029039:+11244 | None:intergenic |
| ATGGCGTATATCATAGGTTT+TGG | 0.254539 | tig0029039:+10646 | None:intergenic |
| TGCTGAGAATCAAGTGAATT+TGG | 0.279066 | tig0029039:-10435 | Msa1440230:CDS |
| CCATGTTGGTATTCTTCAAA+AGG | 0.367139 | tig0029039:+10507 | None:intergenic |
| AGAATACCAACATGGAAATT+GGG | 0.374565 | tig0029039:-10499 | Msa1440230:CDS |
| TGCCACATGGCGTATATCAT+AGG | 0.386203 | tig0029039:+10640 | None:intergenic |
| CTTTGATTGCCAATCAACTA+AGG | 0.392207 | tig0029039:-10399 | Msa1440230:CDS |
| CATAAAATTTGGCAAGGAAG+AGG | 0.404166 | tig0029039:+11255 | None:intergenic |
| GACTGAACCAACTCGTGGCT+TGG | 0.415502 | tig0029039:+10553 | None:intergenic |
| ACTGAACCAACTCGTGGCTT+GGG | 0.424285 | tig0029039:+10554 | None:intergenic |
| GTGAATTTGGAACTCACTCT+TGG | 0.424885 | tig0029039:-10422 | Msa1440230:CDS |
| GGAAGAGGGTGGCATGCCCT+TGG | 0.443110 | tig0029039:+11270 | None:intergenic |
| GCAACTGATCCACTCAAGGC+AGG | 0.443950 | tig0029039:+11301 | None:intergenic |
| TGGCATGCCCTTGGGATTCA+GGG | 0.444879 | tig0029039:+11279 | None:intergenic |
| AAAACTCAATTCAAAAGAGC+TGG | 0.446487 | tig0029039:-10590 | Msa1440230:CDS |
| GCAGTTGAAGCTGTGCTGAC+TGG | 0.456964 | tig0029039:-10749 | Msa1440230:CDS |
| AGATTGGTGAATCCCACATA+TGG | 0.458590 | tig0029039:-10818 | Msa1440230:CDS |
| ATTGATGGGCAAACATCATC+AGG | 0.461143 | tig0029039:-10698 | Msa1440230:CDS |
| TAAGCCAAGCGCCCCATATG+TGG | 0.471835 | tig0029039:+10805 | None:intergenic |
| CATGTTGGTATTCTTCAAAA+GGG | 0.477135 | tig0029039:+10508 | None:intergenic |
| GAAGAGGGTGGCATGCCCTT+GGG | 0.479104 | tig0029039:+11271 | None:intergenic |
| GGAGATTGAGCAAACCGGTT+CGG | 0.494518 | tig0029039:+11231 | None:intergenic |
| AATCATCACTACAACCTTTG+CGG | 0.504650 | tig0029039:+11336 | None:intergenic |
| GATTGGTGAATCCCACATAT+GGG | 0.508471 | tig0029039:-10817 | Msa1440230:CDS |
| GATATACGCCATGTGGCAAA+AGG | 0.516720 | tig0029039:-10635 | Msa1440230:CDS |
| AATCCCACATATGGGGCGCT+TGG | 0.518707 | tig0029039:-10809 | Msa1440230:CDS |
| GGTGAGGAGATTGAGCAAAC+CGG | 0.524508 | tig0029039:+11226 | None:intergenic |
| TCATCAAGCCCTGCCTTGAG+TGG | 0.538225 | tig0029039:-11310 | Msa1440230:CDS |
| GTACCAATGTGGACATCAAA+GGG | 0.546635 | tig0029039:-10613 | Msa1440230:CDS |
| TTTCCCTTTGATGTCCACAT+TGG | 0.551024 | tig0029039:+10610 | None:intergenic |
| GGTACCAATGTGGACATCAA+AGG | 0.551224 | tig0029039:-10614 | Msa1440230:CDS |
| GTACGAGGCAGCTGGTAGAT+TGG | 0.560594 | tig0029039:-10834 | Msa1440230:CDS |
| GAATACCAACATGGAAATTG+GGG | 0.561319 | tig0029039:-10498 | Msa1440230:CDS |
| CTGAAGCCCAAGCCACGAGT+TGG | 0.576033 | tig0029039:-10560 | Msa1440230:CDS |
| AGTCTCCCCAATTTCCATGT+TGG | 0.576332 | tig0029039:+10493 | None:intergenic |
| ATAAAATTTGGCAAGGAAGA+GGG | 0.578936 | tig0029039:+11256 | None:intergenic |
| TTCGGCCATAAAATTTGGCA+AGG | 0.579687 | tig0029039:+11249 | None:intergenic |
| TAATGAAGTTGAGTTGCAAT+GGG | 0.583194 | tig0029039:-11370 | Msa1440230:CDS |
| TTTGATTGCCAATCAACTAA+GGG | 0.586746 | tig0029039:-10398 | Msa1440230:CDS |
| AAGCCAAGCGCCCCATATGT+GGG | 0.589682 | tig0029039:+10806 | None:intergenic |
| AAACTCAATTCAAAAGAGCT+GGG | 0.590181 | tig0029039:-10589 | Msa1440230:CDS |
| CAACTGATCCACTCAAGGCA+GGG | 0.595554 | tig0029039:+11302 | None:intergenic |
| ATCAGTTGCCCTGAATCCCA+AGG | 0.599742 | tig0029039:-11287 | Msa1440230:CDS |
| ATAATGAAGTTGAGTTGCAA+TGG | 0.608858 | tig0029039:-11371 | Msa1440230:CDS |
| TCATTGTTGTACGAGGCAGC+TGG | 0.614180 | tig0029039:-10842 | Msa1440230:CDS |
| ACGAGTTGGTTCAGTCGACT+CGG | 0.622355 | tig0029039:-10546 | Msa1440230:CDS |
| CAGGGCAACTGATCCACTCA+AGG | 0.625744 | tig0029039:+11297 | None:intergenic |
| GGGTGTCGTGTGCTCCGCAA+AGG | 0.627575 | tig0029039:-11350 | Msa1440230:CDS |
| ATTGGTGAATCCCACATATG+GGG | 0.640018 | tig0029039:-10816 | Msa1440230:CDS |
| TTTGATTGGTAGCATTGGTG+AGG | 0.643249 | tig0029039:+11210 | None:intergenic |
| AAATTGGGGAGACTTCATCA+AGG | 0.644743 | tig0029039:-10484 | Msa1440230:CDS |
| AATTGGGGAGACTTCATCAA+GGG | 0.644822 | tig0029039:-10483 | Msa1440230:CDS |
| AATCAAAATCATAATCCACC+AGG | 0.664735 | tig0029039:-11194 | Msa1440230:intron |
| TCAGTTGCCCTGAATCCCAA+GGG | 0.669183 | tig0029039:-11286 | Msa1440230:CDS |
| GAGTCGACTGAACCAACTCG+TGG | 0.679210 | tig0029039:+10548 | None:intergenic |
| AACCTATGATATACGCCATG+TGG | 0.679816 | tig0029039:-10642 | Msa1440230:CDS |
| AAATTTGGCAAGGAAGAGGG+TGG | 0.680062 | tig0029039:+11259 | None:intergenic |
| GTTTAAATCATTGTTGTACG+AGG | 0.684324 | tig0029039:-10849 | Msa1440230:CDS |
| TGTGGCAAAAGGTACCAATG+TGG | 0.731996 | tig0029039:-10624 | Msa1440230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTAATTTATGATCCATAA+TGG | + | tig0029039:10762-10781 | None:intergenic | 20.0% |
| !!! | GAATCTATGAAAAGATTTTA+TGG | + | tig0029039:10803-10822 | None:intergenic | 20.0% |
| !!! | GTTTAATTTATGATCCATAA+TGG | + | tig0029039:10762-10781 | None:intergenic | 20.0% |
| !!! | GAATCTATGAAAAGATTTTA+TGG | + | tig0029039:10803-10822 | None:intergenic | 20.0% |
| ! | CGTAATTCATGAATAATTGA+TGG | - | tig0029039:10605-10624 | Msa1440230:CDS | 25.0% |
| ! | ATTCATGAATAATTGATGGA+TGG | - | tig0029039:10609-10628 | Msa1440230:CDS | 25.0% |
| !! | ACAGTTTTACAATGATTGAT+GGG | - | tig0029039:11032-11051 | Msa1440230:intron | 25.0% |
| ! | CGTAATTCATGAATAATTGA+TGG | - | tig0029039:10605-10624 | Msa1440230:CDS | 25.0% |
| ! | ATTCATGAATAATTGATGGA+TGG | - | tig0029039:10609-10628 | Msa1440230:CDS | 25.0% |
| !! | ACAGTTTTACAATGATTGAT+GGG | - | tig0029039:11032-11051 | Msa1440230:intron | 25.0% |
| ATAAAATTTGGCAAGGAAGA+GGG | + | tig0029039:10491-10510 | None:intergenic | 30.0% | |
| !!! | ATGATTTTGATTGGTAGCAT+TGG | + | tig0029039:10542-10561 | None:intergenic | 30.0% |
| !!! | TGGTGGATTATGATTTTGAT+TGG | + | tig0029039:10551-10570 | None:intergenic | 30.0% |
| AATCAAAATCATAATCCACC+AGG | - | tig0029039:10550-10569 | Msa1440230:CDS | 30.0% | |
| ATAAATGATTCCATCCATCA+TGG | - | tig0029039:10640-10659 | Msa1440230:CDS | 30.0% | |
| ! | CAATTTAAAACCATGATGGA+TGG | + | tig0029039:10653-10672 | None:intergenic | 30.0% |
| !!! | TCCATCATGGTTTTAAATTG+TGG | - | tig0029039:10653-10672 | Msa1440230:CDS | 30.0% |
| ! | ACCACAATTTAAAACCATGA+TGG | + | tig0029039:10657-10676 | None:intergenic | 30.0% |
| TAAAAAAGTTTGTCCTGTAG+CGG | + | tig0029039:10694-10713 | None:intergenic | 30.0% | |
| TATGATCCATAATGGTATTG+CGG | + | tig0029039:10754-10773 | None:intergenic | 30.0% | |
| ATGGAACATAAATGAGACAT+AGG | + | tig0029039:10784-10803 | None:intergenic | 30.0% | |
| GTTTAAATCATTGTTGTACG+AGG | - | tig0029039:10895-10914 | Msa1440230:intron | 30.0% | |
| ! | GACAGTTTTACAATGATTGA+TGG | - | tig0029039:11031-11050 | Msa1440230:intron | 30.0% |
| AAAACTCAATTCAAAAGAGC+TGG | - | tig0029039:11154-11173 | Msa1440230:intron | 30.0% | |
| AAACTCAATTCAAAAGAGCT+GGG | - | tig0029039:11155-11174 | Msa1440230:intron | 30.0% | |
| CATGTTGGTATTCTTCAAAA+GGG | + | tig0029039:11239-11258 | None:intergenic | 30.0% | |
| AAGAATACCAACATGGAAAT+TGG | - | tig0029039:11244-11263 | Msa1440230:CDS | 30.0% | |
| AGAATACCAACATGGAAATT+GGG | - | tig0029039:11245-11264 | Msa1440230:CDS | 30.0% | |
| TTTGATTGCCAATCAACTAA+GGG | - | tig0029039:11346-11365 | Msa1440230:CDS | 30.0% | |
| ATAAAATTTGGCAAGGAAGA+GGG | + | tig0029039:10491-10510 | None:intergenic | 30.0% | |
| !!! | ATGATTTTGATTGGTAGCAT+TGG | + | tig0029039:10542-10561 | None:intergenic | 30.0% |
| !!! | TGGTGGATTATGATTTTGAT+TGG | + | tig0029039:10551-10570 | None:intergenic | 30.0% |
| AATCAAAATCATAATCCACC+AGG | - | tig0029039:10550-10569 | Msa1440230:CDS | 30.0% | |
| ATAAATGATTCCATCCATCA+TGG | - | tig0029039:10640-10659 | Msa1440230:CDS | 30.0% | |
| ! | CAATTTAAAACCATGATGGA+TGG | + | tig0029039:10653-10672 | None:intergenic | 30.0% |
| !!! | TCCATCATGGTTTTAAATTG+TGG | - | tig0029039:10653-10672 | Msa1440230:CDS | 30.0% |
| ! | ACCACAATTTAAAACCATGA+TGG | + | tig0029039:10657-10676 | None:intergenic | 30.0% |
| TAAAAAAGTTTGTCCTGTAG+CGG | + | tig0029039:10694-10713 | None:intergenic | 30.0% | |
| TATGATCCATAATGGTATTG+CGG | + | tig0029039:10754-10773 | None:intergenic | 30.0% | |
| ATGGAACATAAATGAGACAT+AGG | + | tig0029039:10784-10803 | None:intergenic | 30.0% | |
| GTTTAAATCATTGTTGTACG+AGG | - | tig0029039:10895-10914 | Msa1440230:intron | 30.0% | |
| ! | GACAGTTTTACAATGATTGA+TGG | - | tig0029039:11031-11050 | Msa1440230:intron | 30.0% |
| AAAACTCAATTCAAAAGAGC+TGG | - | tig0029039:11154-11173 | Msa1440230:intron | 30.0% | |
| AAACTCAATTCAAAAGAGCT+GGG | - | tig0029039:11155-11174 | Msa1440230:intron | 30.0% | |
| CATGTTGGTATTCTTCAAAA+GGG | + | tig0029039:11239-11258 | None:intergenic | 30.0% | |
| AAGAATACCAACATGGAAAT+TGG | - | tig0029039:11244-11263 | Msa1440230:CDS | 30.0% | |
| AGAATACCAACATGGAAATT+GGG | - | tig0029039:11245-11264 | Msa1440230:CDS | 30.0% | |
| TTTGATTGCCAATCAACTAA+GGG | - | tig0029039:11346-11365 | Msa1440230:CDS | 30.0% | |
| AATCATCACTACAACCTTTG+CGG | + | tig0029039:10411-10430 | None:intergenic | 35.0% | |
| CATAAAATTTGGCAAGGAAG+AGG | + | tig0029039:10492-10511 | None:intergenic | 35.0% | |
| ! | CTCTTCCTTGCCAAATTTTA+TGG | - | tig0029039:10490-10509 | Msa1440230:CDS | 35.0% |
| ! | TGGCGTATATCATAGGTTTT+GGG | + | tig0029039:11100-11119 | None:intergenic | 35.0% |
| ! | ATGGCGTATATCATAGGTTT+TGG | + | tig0029039:11101-11120 | None:intergenic | 35.0% |
| CCATGTTGGTATTCTTCAAA+AGG | + | tig0029039:11240-11259 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATACCAACA+TGG | - | tig0029039:11237-11256 | Msa1440230:CDS | 35.0% |
| GAATACCAACATGGAAATTG+GGG | - | tig0029039:11246-11265 | Msa1440230:CDS | 35.0% | |
| TGCTGAGAATCAAGTGAATT+TGG | - | tig0029039:11309-11328 | Msa1440230:CDS | 35.0% | |
| CTTTGATTGCCAATCAACTA+AGG | - | tig0029039:11345-11364 | Msa1440230:CDS | 35.0% | |
| ! | TTTTCTTGCCCTTAGTTGAT+TGG | + | tig0029039:11357-11376 | None:intergenic | 35.0% |
| AATCATCACTACAACCTTTG+CGG | + | tig0029039:10411-10430 | None:intergenic | 35.0% | |
| CATAAAATTTGGCAAGGAAG+AGG | + | tig0029039:10492-10511 | None:intergenic | 35.0% | |
| ! | CTCTTCCTTGCCAAATTTTA+TGG | - | tig0029039:10490-10509 | Msa1440230:CDS | 35.0% |
| ! | TGGCGTATATCATAGGTTTT+GGG | + | tig0029039:11100-11119 | None:intergenic | 35.0% |
| ! | ATGGCGTATATCATAGGTTT+TGG | + | tig0029039:11101-11120 | None:intergenic | 35.0% |
| CCATGTTGGTATTCTTCAAA+AGG | + | tig0029039:11240-11259 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATACCAACA+TGG | - | tig0029039:11237-11256 | Msa1440230:CDS | 35.0% |
| GAATACCAACATGGAAATTG+GGG | - | tig0029039:11246-11265 | Msa1440230:CDS | 35.0% | |
| TGCTGAGAATCAAGTGAATT+TGG | - | tig0029039:11309-11328 | Msa1440230:CDS | 35.0% | |
| CTTTGATTGCCAATCAACTA+AGG | - | tig0029039:11345-11364 | Msa1440230:CDS | 35.0% | |
| ! | TTTTCTTGCCCTTAGTTGAT+TGG | + | tig0029039:11357-11376 | None:intergenic | 35.0% |
| TTCGGCCATAAAATTTGGCA+AGG | + | tig0029039:10498-10517 | None:intergenic | 40.0% | |
| !! | TTTGATTGGTAGCATTGGTG+AGG | + | tig0029039:10537-10556 | None:intergenic | 40.0% |
| AGATTGGTGAATCCCACATA+TGG | - | tig0029039:10926-10945 | Msa1440230:intron | 40.0% | |
| GATTGGTGAATCCCACATAT+GGG | - | tig0029039:10927-10946 | Msa1440230:intron | 40.0% | |
| ATTGGTGAATCCCACATATG+GGG | - | tig0029039:10928-10947 | Msa1440230:intron | 40.0% | |
| !!! | GCTTATTTTGGACAGCGAAT+TGG | - | tig0029039:10957-10976 | Msa1440230:intron | 40.0% |
| ! | ATTGATGGGCAAACATCATC+AGG | - | tig0029039:11046-11065 | Msa1440230:intron | 40.0% |
| ! | GGCGTATATCATAGGTTTTG+GGG | + | tig0029039:11099-11118 | None:intergenic | 40.0% |
| AACCTATGATATACGCCATG+TGG | - | tig0029039:11102-11121 | Msa1440230:intron | 40.0% | |
| GTACCAATGTGGACATCAAA+GGG | - | tig0029039:11131-11150 | Msa1440230:intron | 40.0% | |
| TTTCCCTTTGATGTCCACAT+TGG | + | tig0029039:11137-11156 | None:intergenic | 40.0% | |
| AAATTGGGGAGACTTCATCA+AGG | - | tig0029039:11260-11279 | Msa1440230:CDS | 40.0% | |
| AATTGGGGAGACTTCATCAA+GGG | - | tig0029039:11261-11280 | Msa1440230:CDS | 40.0% | |
| ! | GTGAATTTGGAACTCACTCT+TGG | - | tig0029039:11322-11341 | Msa1440230:CDS | 40.0% |
| TTCGGCCATAAAATTTGGCA+AGG | + | tig0029039:10498-10517 | None:intergenic | 40.0% | |
| !! | TTTGATTGGTAGCATTGGTG+AGG | + | tig0029039:10537-10556 | None:intergenic | 40.0% |
| AGATTGGTGAATCCCACATA+TGG | - | tig0029039:10926-10945 | Msa1440230:intron | 40.0% | |
| GATTGGTGAATCCCACATAT+GGG | - | tig0029039:10927-10946 | Msa1440230:intron | 40.0% | |
| ATTGGTGAATCCCACATATG+GGG | - | tig0029039:10928-10947 | Msa1440230:intron | 40.0% | |
| !!! | GCTTATTTTGGACAGCGAAT+TGG | - | tig0029039:10957-10976 | Msa1440230:intron | 40.0% |
| ! | ATTGATGGGCAAACATCATC+AGG | - | tig0029039:11046-11065 | Msa1440230:intron | 40.0% |
| ! | GGCGTATATCATAGGTTTTG+GGG | + | tig0029039:11099-11118 | None:intergenic | 40.0% |
| AACCTATGATATACGCCATG+TGG | - | tig0029039:11102-11121 | Msa1440230:intron | 40.0% | |
| GTACCAATGTGGACATCAAA+GGG | - | tig0029039:11131-11150 | Msa1440230:intron | 40.0% | |
| TTTCCCTTTGATGTCCACAT+TGG | + | tig0029039:11137-11156 | None:intergenic | 40.0% | |
| AAATTGGGGAGACTTCATCA+AGG | - | tig0029039:11260-11279 | Msa1440230:CDS | 40.0% | |
| AATTGGGGAGACTTCATCAA+GGG | - | tig0029039:11261-11280 | Msa1440230:CDS | 40.0% | |
| ! | GTGAATTTGGAACTCACTCT+TGG | - | tig0029039:11322-11341 | Msa1440230:CDS | 40.0% |
| AAATTTGGCAAGGAAGAGGG+TGG | + | tig0029039:10488-10507 | None:intergenic | 45.0% | |
| ! | GCCAAATTTTATGGCCGAAC+CGG | - | tig0029039:10499-10518 | Msa1440230:CDS | 45.0% |
| !! | ACCGGTTCGGCCATAAAATT+TGG | + | tig0029039:10503-10522 | None:intergenic | 45.0% |
| AGTGAACTTAGCTAGCTACC+TGG | + | tig0029039:10571-10590 | None:intergenic | 45.0% | |
| GTGACCAACTTAAGTCGATG+CGG | - | tig0029039:10728-10747 | Msa1440230:CDS | 45.0% | |
| TGCCACATGGCGTATATCAT+AGG | + | tig0029039:11107-11126 | None:intergenic | 45.0% | |
| GATATACGCCATGTGGCAAA+AGG | - | tig0029039:11109-11128 | Msa1440230:intron | 45.0% | |
| ! | CATTGGTACCTTTTGCCACA+TGG | + | tig0029039:11120-11139 | None:intergenic | 45.0% |
| !! | TGTGGCAAAAGGTACCAATG+TGG | - | tig0029039:11120-11139 | Msa1440230:intron | 45.0% |
| GGTACCAATGTGGACATCAA+AGG | - | tig0029039:11130-11149 | Msa1440230:intron | 45.0% | |
| AGTCTCCCCAATTTCCATGT+TGG | + | tig0029039:11254-11273 | None:intergenic | 45.0% | |
| AAATTTGGCAAGGAAGAGGG+TGG | + | tig0029039:10488-10507 | None:intergenic | 45.0% | |
| ! | GCCAAATTTTATGGCCGAAC+CGG | - | tig0029039:10499-10518 | Msa1440230:CDS | 45.0% |
| !! | ACCGGTTCGGCCATAAAATT+TGG | + | tig0029039:10503-10522 | None:intergenic | 45.0% |
| AGTGAACTTAGCTAGCTACC+TGG | + | tig0029039:10571-10590 | None:intergenic | 45.0% | |
| GTGACCAACTTAAGTCGATG+CGG | - | tig0029039:10728-10747 | Msa1440230:CDS | 45.0% | |
| TGCCACATGGCGTATATCAT+AGG | + | tig0029039:11107-11126 | None:intergenic | 45.0% | |
| GATATACGCCATGTGGCAAA+AGG | - | tig0029039:11109-11128 | Msa1440230:intron | 45.0% | |
| ! | CATTGGTACCTTTTGCCACA+TGG | + | tig0029039:11120-11139 | None:intergenic | 45.0% |
| !! | TGTGGCAAAAGGTACCAATG+TGG | - | tig0029039:11120-11139 | Msa1440230:intron | 45.0% |
| GGTACCAATGTGGACATCAA+AGG | - | tig0029039:11130-11149 | Msa1440230:intron | 45.0% | |
| AGTCTCCCCAATTTCCATGT+TGG | + | tig0029039:11254-11273 | None:intergenic | 45.0% | |
| CAACTGATCCACTCAAGGCA+GGG | + | tig0029039:10445-10464 | None:intergenic | 50.0% | |
| ATCAGTTGCCCTGAATCCCA+AGG | - | tig0029039:10457-10476 | Msa1440230:CDS | 50.0% | |
| TCAGTTGCCCTGAATCCCAA+GGG | - | tig0029039:10458-10477 | Msa1440230:CDS | 50.0% | |
| GGAGATTGAGCAAACCGGTT+CGG | + | tig0029039:10516-10535 | None:intergenic | 50.0% | |
| GGTGAGGAGATTGAGCAAAC+CGG | + | tig0029039:10521-10540 | None:intergenic | 50.0% | |
| GAACTTAGCTAGCTACCTGG+TGG | + | tig0029039:10568-10587 | None:intergenic | 50.0% | |
| ATGCGGCCGCAATACCATTA+TGG | - | tig0029039:10745-10764 | Msa1440230:CDS | 50.0% | |
| TCATTGTTGTACGAGGCAGC+TGG | - | tig0029039:10902-10921 | Msa1440230:intron | 50.0% | |
| !! | ATGGGGCGCTTGGCTTATTT+TGG | - | tig0029039:10945-10964 | Msa1440230:intron | 50.0% |
| ACTGAACCAACTCGTGGCTT+GGG | + | tig0029039:11193-11212 | None:intergenic | 50.0% | |
| !! | ACGAGTTGGTTCAGTCGACT+CGG | - | tig0029039:11198-11217 | Msa1440230:CDS | 50.0% |
| CAACTGATCCACTCAAGGCA+GGG | + | tig0029039:10445-10464 | None:intergenic | 50.0% | |
| ATCAGTTGCCCTGAATCCCA+AGG | - | tig0029039:10457-10476 | Msa1440230:CDS | 50.0% | |
| TCAGTTGCCCTGAATCCCAA+GGG | - | tig0029039:10458-10477 | Msa1440230:CDS | 50.0% | |
| GGAGATTGAGCAAACCGGTT+CGG | + | tig0029039:10516-10535 | None:intergenic | 50.0% | |
| GGTGAGGAGATTGAGCAAAC+CGG | + | tig0029039:10521-10540 | None:intergenic | 50.0% | |
| GAACTTAGCTAGCTACCTGG+TGG | + | tig0029039:10568-10587 | None:intergenic | 50.0% | |
| ATGCGGCCGCAATACCATTA+TGG | - | tig0029039:10745-10764 | Msa1440230:CDS | 50.0% | |
| TCATTGTTGTACGAGGCAGC+TGG | - | tig0029039:10902-10921 | Msa1440230:intron | 50.0% | |
| !! | ATGGGGCGCTTGGCTTATTT+TGG | - | tig0029039:10945-10964 | Msa1440230:intron | 50.0% |
| ACTGAACCAACTCGTGGCTT+GGG | + | tig0029039:11193-11212 | None:intergenic | 50.0% | |
| !! | ACGAGTTGGTTCAGTCGACT+CGG | - | tig0029039:11198-11217 | Msa1440230:CDS | 50.0% |
| TCATCAAGCCCTGCCTTGAG+TGG | - | tig0029039:10434-10453 | Msa1440230:CDS | 55.0% | |
| GCAACTGATCCACTCAAGGC+AGG | + | tig0029039:10446-10465 | None:intergenic | 55.0% | |
| CAGGGCAACTGATCCACTCA+AGG | + | tig0029039:10450-10469 | None:intergenic | 55.0% | |
| TGGCATGCCCTTGGGATTCA+GGG | + | tig0029039:10468-10487 | None:intergenic | 55.0% | |
| GATGTTGCAGTTGCCGCTAC+AGG | - | tig0029039:10678-10697 | Msa1440230:CDS | 55.0% | |
| GTACGAGGCAGCTGGTAGAT+TGG | - | tig0029039:10910-10929 | Msa1440230:intron | 55.0% | |
| ! | AATCCCACATATGGGGCGCT+TGG | - | tig0029039:10935-10954 | Msa1440230:intron | 55.0% |
| AAGCCAAGCGCCCCATATGT+GGG | + | tig0029039:10941-10960 | None:intergenic | 55.0% | |
| TAAGCCAAGCGCCCCATATG+TGG | + | tig0029039:10942-10961 | None:intergenic | 55.0% | |
| ! | GCAGTTGAAGCTGTGCTGAC+TGG | - | tig0029039:10995-11014 | Msa1440230:intron | 55.0% |
| GACTGAACCAACTCGTGGCT+TGG | + | tig0029039:11194-11213 | None:intergenic | 55.0% | |
| GAGTCGACTGAACCAACTCG+TGG | + | tig0029039:11199-11218 | None:intergenic | 55.0% | |
| TCATCAAGCCCTGCCTTGAG+TGG | - | tig0029039:10434-10453 | Msa1440230:CDS | 55.0% | |
| GCAACTGATCCACTCAAGGC+AGG | + | tig0029039:10446-10465 | None:intergenic | 55.0% | |
| CAGGGCAACTGATCCACTCA+AGG | + | tig0029039:10450-10469 | None:intergenic | 55.0% | |
| TGGCATGCCCTTGGGATTCA+GGG | + | tig0029039:10468-10487 | None:intergenic | 55.0% | |
| GATGTTGCAGTTGCCGCTAC+AGG | - | tig0029039:10678-10697 | Msa1440230:CDS | 55.0% | |
| GTACGAGGCAGCTGGTAGAT+TGG | - | tig0029039:10910-10929 | Msa1440230:intron | 55.0% | |
| ! | AATCCCACATATGGGGCGCT+TGG | - | tig0029039:10935-10954 | Msa1440230:intron | 55.0% |
| AAGCCAAGCGCCCCATATGT+GGG | + | tig0029039:10941-10960 | None:intergenic | 55.0% | |
| TAAGCCAAGCGCCCCATATG+TGG | + | tig0029039:10942-10961 | None:intergenic | 55.0% | |
| ! | GCAGTTGAAGCTGTGCTGAC+TGG | - | tig0029039:10995-11014 | Msa1440230:intron | 55.0% |
| GACTGAACCAACTCGTGGCT+TGG | + | tig0029039:11194-11213 | None:intergenic | 55.0% | |
| GAGTCGACTGAACCAACTCG+TGG | + | tig0029039:11199-11218 | None:intergenic | 55.0% | |
| GTGGCATGCCCTTGGGATTC+AGG | + | tig0029039:10469-10488 | None:intergenic | 60.0% | |
| GAAGAGGGTGGCATGCCCTT+GGG | + | tig0029039:10476-10495 | None:intergenic | 60.0% | |
| !! | GCGGCCGCATCGACTTAAGT+TGG | + | tig0029039:10735-10754 | None:intergenic | 60.0% |
| CTGAAGCCCAAGCCACGAGT+TGG | - | tig0029039:11184-11203 | Msa1440230:intron | 60.0% | |
| GTGGCATGCCCTTGGGATTC+AGG | + | tig0029039:10469-10488 | None:intergenic | 60.0% | |
| GAAGAGGGTGGCATGCCCTT+GGG | + | tig0029039:10476-10495 | None:intergenic | 60.0% | |
| !! | GCGGCCGCATCGACTTAAGT+TGG | + | tig0029039:10735-10754 | None:intergenic | 60.0% |
| CTGAAGCCCAAGCCACGAGT+TGG | - | tig0029039:11184-11203 | Msa1440230:intron | 60.0% | |
| ! | GGGTGTCGTGTGCTCCGCAA+AGG | - | tig0029039:10394-10413 | Msa1440230:CDS | 65.0% |
| GGAAGAGGGTGGCATGCCCT+TGG | + | tig0029039:10477-10496 | None:intergenic | 65.0% | |
| ! | GGGTGTCGTGTGCTCCGCAA+AGG | - | tig0029039:10394-10413 | Msa1440230:CDS | 65.0% |
| GGAAGAGGGTGGCATGCCCT+TGG | + | tig0029039:10477-10496 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0029039 | gene | 10376 | 11390 | 10376 | ID=Msa1440230;Name=Msa1440230 |
| tig0029039 | mRNA | 10376 | 11390 | 10376 | ID=Msa1440230-mRNA-1;Parent=Msa1440230;Name=Msa1440230-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|231 |
| tig0029039 | exon | 11195 | 11390 | 11195 | ID=Msa1440230-mRNA-1:exon:12166;Parent=Msa1440230-mRNA-1 |
| tig0029039 | exon | 10376 | 10875 | 10376 | ID=Msa1440230-mRNA-1:exon:12165;Parent=Msa1440230-mRNA-1 |
| tig0029039 | CDS | 11195 | 11390 | 11195 | ID=Msa1440230-mRNA-1:cds;Parent=Msa1440230-mRNA-1 |
| tig0029039 | CDS | 10376 | 10875 | 10376 | ID=Msa1440230-mRNA-1:cds;Parent=Msa1440230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
