AlfalfaGEDB | Msa1440230

M. sativa cultivar zhongmu-4 / Msa1440230

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1440230	sp\|Q9M886\|LBD41_ARATH	40.529	227	122	5	1	225	1	216	2.75e-52	172

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1440230	G7ZZB8	95.671	231	10	0	1	231	1	231	1.82e-163	460

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TFs/TRs:

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Gene ID	Type	Classification
Msa1440230	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1440230	MtrunA17_Chr6g0469271	93.939	231	14	0	1	231	1	231	1.40e-164	453
Msa1440230	MtrunA17_Chr6g0470631	90.476	231	22	0	1	231	1	231	1.86e-158	438
Msa1440230	MtrunA17_Chr6g0470651	88.745	231	26	0	1	231	1	231	2.34e-156	432
Msa1440230	MtrunA17_Chr1g0209841	91.342	231	10	1	1	231	1	221	2.44e-156	432
Msa1440230	MtrunA17_Chr6g0457431	55.422	166	56	6	1	160	1	154	4.58e-60	186
Msa1440230	MtrunA17_Chr7g0215281	44.053	227	109	7	1	223	1	213	8.42e-56	180
Msa1440230	MtrunA17_Chr4g0053911	56.303	119	48	2	3	119	1	117	1.65e-46	154
Msa1440230	MtrunA17_Chr5g0401401	44.970	169	82	5	3	165	1	164	5.49e-45	150
Msa1440230	MtrunA17_Chr1g0207471	44.882	127	63	2	3	124	1	125	7.99e-36	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1440230	AT3G02550.1	40.529	227	122	5	1	225	1	216	2.80e-53	172
Msa1440230	AT1G68510.1	55.102	147	54	3	1	145	1	137	3.07e-53	171
Msa1440230	AT1G67100.1	54.861	144	57	3	1	144	1	136	5.96e-50	163
Msa1440230	AT3G49940.1	53.659	123	55	1	3	125	1	121	1.41e-45	152
Msa1440230	AT5G67420.2	55.963	109	46	1	3	111	1	107	1.14e-43	147
Msa1440230	AT5G67420.1	55.963	109	46	1	3	111	1	107	1.14e-43	147
Msa1440230	AT4G37540.1	57.798	109	44	1	3	111	1	107	1.50e-43	147

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Find 62 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCAATTCAAAAGAGC+TGG	0.446487	tig0029039:-10590	Msa1440230:CDS
AAACTCAATTCAAAAGAGCT+GGG	0.590181	tig0029039:-10589	Msa1440230:CDS
AAATTGGGGAGACTTCATCA+AGG	0.644743	tig0029039:-10484	Msa1440230:CDS
AAATTTGGCAAGGAAGAGGG+TGG	0.680062	tig0029039:+11259	None:intergenic
AACCTATGATATACGCCATG+TGG	0.679816	tig0029039:-10642	Msa1440230:CDS
AAGAATACCAACATGGAAAT+TGG	0.166066	tig0029039:-10500	Msa1440230:CDS
AAGCCAAGCGCCCCATATGT+GGG	0.589682	tig0029039:+10806	None:intergenic
AATCAAAATCATAATCCACC+AGG	0.664735	tig0029039:-11194	Msa1440230:intron
AATCATCACTACAACCTTTG+CGG	0.504650	tig0029039:+11336	None:intergenic
AATCCCACATATGGGGCGCT+TGG	0.518707	tig0029039:-10809	Msa1440230:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAAAATTTGGCAAGGAAGA+GGG	+	tig0029039:10491-10510	None:intergenic	30.0%
AATCAAAATCATAATCCACC+AGG	-	tig0029039:10550-10569	Msa1440230:CDS	30.0%
ATAAATGATTCCATCCATCA+TGG	-	tig0029039:10640-10659	Msa1440230:CDS	30.0%
TAAAAAAGTTTGTCCTGTAG+CGG	+	tig0029039:10694-10713	None:intergenic	30.0%
TATGATCCATAATGGTATTG+CGG	+	tig0029039:10754-10773	None:intergenic	30.0%
ATGGAACATAAATGAGACAT+AGG	+	tig0029039:10784-10803	None:intergenic	30.0%
GTTTAAATCATTGTTGTACG+AGG	-	tig0029039:10895-10914	Msa1440230:intron	30.0%
AAAACTCAATTCAAAAGAGC+TGG	-	tig0029039:11154-11173	Msa1440230:intron	30.0%
AAACTCAATTCAAAAGAGCT+GGG	-	tig0029039:11155-11174	Msa1440230:intron	30.0%
CATGTTGGTATTCTTCAAAA+GGG	+	tig0029039:11239-11258	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0029039	gene	10376	11390	10376	ID=Msa1440230;Name=Msa1440230
tig0029039	mRNA	10376	11390	10376	ID=Msa1440230-mRNA-1;Parent=Msa1440230;Name=Msa1440230-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|2\|0\|231
tig0029039	exon	11195	11390	11195	ID=Msa1440230-mRNA-1:exon:12166;Parent=Msa1440230-mRNA-1
tig0029039	exon	10376	10875	10376	ID=Msa1440230-mRNA-1:exon:12165;Parent=Msa1440230-mRNA-1
tig0029039	CDS	11195	11390	11195	ID=Msa1440230-mRNA-1:cds;Parent=Msa1440230-mRNA-1
tig0029039	CDS	10376	10875	10376	ID=Msa1440230-mRNA-1:cds;Parent=Msa1440230-mRNA-1

Gene Sequence

>Msa1440230

ATGAAGTTGAGTTGCAATGGGTGTCGTGTGCTCCGCAAAGGTTGTAGTGATGATTGTATCATCAAGCCCTGCCTTGAGTGGATCAGTTGCCCTGAATCCCAAGGGCATGCCACCCTCTTCCTTGCCAAATTTTATGGCCGAACCGGTTTGCTCAATCTCCTCACCAATGCTACCAATCAAAATCATAATCCACCAGCTGTGTTTAAATCATTGTTGTACGAGGCAGCTGGTAGATTGGTGAATCCCACATATGGGGCGCTTGGCTTATTTTGGACAGCGAATTGGAGTCGTTGTGAAGCTGCAGTTGAAGCTGTGCTGACTGGATCGAATATTAATGACAGTTTTACAATGATTGATGGGCAAACATCATCAGGTACACTCAATGCTGAAAATCATGTTCTCCCCAAAACCTATGATATACGCCATGTGGCAAAAGGTACCAATGTGGACATCAAAGGGAAAACTCAATTCAAAAGAGCTGGGCAAGTTCTGAAGCCCAAGCCACGAGTTGGTTCAGTCGACTCGGCTACAATGTTGAAATCCCTTTTGAAGAATACCAACATGGAAATTGGGGAGACTTCATCAAGGGTTCAAACAGAGAAAATTAATGAAGCTGCTGAGAATCAAGTGAATTTGGAACTCACTCTTGGCTTTGATTGCCAATCAACTAAGGGCAAGAAAATATTAGATAAATGA

Protein sequence

>Msa1440230

MKLSCNGCRVLRKGCSDDCIIKPCLEWISCPESQGHATLFLAKFYGRTGLLNLLTNATNQNHNPPAVFKSLLYEAAGRLVNPTYGALGLFWTANWSRCEAAVEAVLTGSNINDSFTMIDGQTSSGTLNAENHVLPKTYDIRHVAKGTNVDIKGKTQFKRAGQVLKPKPRVGSVDSATMLKSLLKNTNMEIGETSSRVQTEKINEAAENQVNLELTLGFDCQSTKGKKILDK*