Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441720 | sp|Q9FIM0|AGL82_ARATH | 30.380 | 158 | 105 | 3 | 6 | 160 | 6 | 161 | 8.98e-17 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441720 | A0A072VR19 | 92.090 | 354 | 19 | 2 | 1 | 352 | 1 | 347 | 0.0 | 655 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1441720 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441720 | MtrunA17_Chr1g0212151 | 92.090 | 354 | 19 | 2 | 1 | 352 | 1 | 347 | 0.0 | 655 |
| Msa1441720 | MtrunA17_Chr6g0457851 | 73.596 | 356 | 80 | 3 | 1 | 352 | 11 | 356 | 0.0 | 533 |
| Msa1441720 | MtrunA17_Chr6g0449861 | 61.667 | 360 | 117 | 7 | 1 | 352 | 9 | 355 | 1.07e-143 | 413 |
| Msa1441720 | MtrunA17_Chr6g0449851 | 56.742 | 356 | 109 | 6 | 1 | 352 | 1 | 315 | 5.08e-131 | 379 |
| Msa1441720 | MtrunA17_Chr4g0059631 | 41.935 | 155 | 87 | 1 | 1 | 155 | 1 | 152 | 1.76e-35 | 131 |
| Msa1441720 | MtrunA17_Chr1g0212471 | 32.796 | 186 | 124 | 1 | 1 | 186 | 1 | 185 | 1.16e-32 | 122 |
| Msa1441720 | MtrunA17_Chr4g0022641 | 37.126 | 167 | 102 | 1 | 1 | 167 | 1 | 164 | 2.06e-30 | 120 |
| Msa1441720 | MtrunA17_Chr2g0303981 | 38.365 | 159 | 93 | 2 | 3 | 160 | 5 | 159 | 6.75e-29 | 111 |
| Msa1441720 | MtrunA17_Chr5g0432691 | 34.454 | 119 | 70 | 4 | 1 | 118 | 1 | 112 | 1.69e-15 | 73.9 |
| Msa1441720 | MtrunA17_Chr3g0134451 | 33.945 | 109 | 64 | 3 | 1 | 109 | 1 | 101 | 3.10e-14 | 73.2 |
| Msa1441720 | MtrunA17_Chr3g0107381 | 23.478 | 230 | 151 | 8 | 1 | 214 | 1 | 221 | 4.67e-14 | 71.2 |
| Msa1441720 | MtrunA17_Chr4g0014321 | 35.897 | 117 | 60 | 4 | 1 | 116 | 1 | 103 | 2.65e-13 | 68.9 |
| Msa1441720 | MtrunA17_Chr8g0379021 | 30.625 | 160 | 84 | 5 | 2 | 144 | 12 | 161 | 3.84e-12 | 64.7 |
| Msa1441720 | MtrunA17_Chr3g0107351 | 32.759 | 116 | 69 | 4 | 3 | 116 | 2 | 110 | 7.24e-12 | 63.5 |
| Msa1441720 | MtrunA17_Chr2g0284911 | 28.025 | 157 | 98 | 4 | 1 | 154 | 16 | 160 | 1.42e-11 | 64.7 |
| Msa1441720 | MtrunA17_Chr3g0107341 | 34.188 | 117 | 66 | 5 | 3 | 116 | 2 | 110 | 1.83e-11 | 62.4 |
| Msa1441720 | MtrunA17_Chr3g0107361 | 29.375 | 160 | 99 | 6 | 3 | 154 | 2 | 155 | 4.14e-11 | 61.2 |
| Msa1441720 | MtrunA17_Chr1g0197321 | 25.949 | 158 | 103 | 5 | 1 | 150 | 1 | 152 | 4.28e-11 | 61.2 |
| Msa1441720 | MtrunA17_Chr3g0110131 | 25.703 | 249 | 138 | 8 | 1 | 214 | 1 | 237 | 4.72e-11 | 62.8 |
| Msa1441720 | MtrunA17_Chr2g0283941 | 31.481 | 108 | 66 | 4 | 2 | 108 | 3 | 103 | 4.86e-11 | 62.8 |
| Msa1441720 | MtrunA17_Chr3g0107331 | 30.909 | 110 | 69 | 3 | 3 | 111 | 2 | 105 | 4.87e-11 | 60.8 |
| Msa1441720 | MtrunA17_Chr8g0380021 | 27.632 | 152 | 101 | 3 | 1 | 152 | 17 | 159 | 5.61e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441720 | AT5G55690.1 | 39.310 | 145 | 80 | 2 | 1 | 144 | 1 | 138 | 8.70e-25 | 103 |
| Msa1441720 | AT5G55690.2 | 39.310 | 145 | 80 | 2 | 1 | 144 | 1 | 138 | 8.70e-25 | 103 |
| Msa1441720 | AT5G58890.1 | 30.380 | 158 | 105 | 3 | 6 | 160 | 6 | 161 | 9.12e-18 | 83.6 |
| Msa1441720 | AT3G18650.1 | 25.651 | 269 | 156 | 9 | 16 | 267 | 31 | 272 | 5.92e-15 | 76.6 |
| Msa1441720 | AT1G22590.2 | 29.677 | 155 | 98 | 3 | 1 | 150 | 1 | 149 | 1.00e-12 | 66.2 |
| Msa1441720 | AT1G65330.1 | 33.333 | 111 | 67 | 4 | 3 | 112 | 2 | 106 | 1.25e-12 | 68.2 |
| Msa1441720 | AT1G65300.1 | 33.636 | 110 | 64 | 4 | 5 | 112 | 4 | 106 | 1.49e-12 | 68.2 |
| Msa1441720 | AT3G05860.2 | 37.662 | 77 | 42 | 2 | 1 | 77 | 1 | 71 | 1.93e-12 | 66.6 |
| Msa1441720 | AT2G28700.1 | 26.842 | 190 | 117 | 7 | 1 | 182 | 1 | 176 | 1.99e-12 | 68.2 |
| Msa1441720 | AT3G05860.3 | 37.662 | 77 | 42 | 2 | 1 | 77 | 1 | 71 | 2.94e-12 | 66.6 |
| Msa1441720 | AT3G05860.1 | 37.662 | 77 | 42 | 2 | 1 | 77 | 1 | 71 | 3.37e-12 | 66.6 |
| Msa1441720 | AT5G23260.3 | 27.329 | 161 | 100 | 4 | 1 | 157 | 1 | 148 | 8.55e-12 | 65.1 |
| Msa1441720 | AT5G26650.1 | 32.174 | 115 | 67 | 4 | 5 | 116 | 3 | 109 | 1.39e-11 | 65.9 |
| Msa1441720 | AT5G13790.2 | 31.967 | 122 | 74 | 3 | 1 | 122 | 1 | 113 | 6.02e-11 | 63.2 |
| Msa1441720 | AT5G23260.1 | 26.901 | 171 | 97 | 5 | 1 | 157 | 17 | 173 | 6.49e-11 | 63.2 |
| Msa1441720 | AT5G27960.1 | 31.193 | 109 | 68 | 4 | 5 | 112 | 3 | 105 | 7.49e-11 | 63.5 |
| Msa1441720 | AT2G03060.3 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 7.74e-11 | 63.9 |
| Msa1441720 | AT2G03060.7 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 7.74e-11 | 63.9 |
| Msa1441720 | AT2G03060.1 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 7.74e-11 | 63.9 |
| Msa1441720 | AT2G40210.1 | 31.731 | 104 | 64 | 3 | 1 | 103 | 1 | 98 | 7.85e-11 | 63.9 |
| Msa1441720 | AT4G09960.5 | 27.215 | 158 | 98 | 5 | 1 | 154 | 11 | 155 | 8.25e-11 | 62.4 |
| Msa1441720 | AT4G09960.1 | 27.215 | 158 | 98 | 5 | 1 | 154 | 1 | 145 | 8.68e-11 | 62.0 |
| Msa1441720 | AT4G09960.6 | 27.215 | 158 | 98 | 5 | 1 | 154 | 2 | 146 | 8.88e-11 | 62.0 |
| Msa1441720 | AT2G03060.2 | 22.727 | 176 | 121 | 4 | 1 | 173 | 1 | 164 | 9.45e-11 | 63.5 |
Find 96 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTTTCCATATTGATTT+TGG | 0.055519 | tig0029335:-42189 | None:intergenic |
| CCACATGGATTTCAACTTAA+TGG | 0.122963 | tig0029335:+42329 | Msa1441720:CDS |
| TTGTCTTTAGGCCATGTTTC+AGG | 0.191776 | tig0029335:-41525 | None:intergenic |
| TTGATGTTAATGGGGCTAAT+TGG | 0.199081 | tig0029335:+42102 | Msa1441720:CDS |
| AAATCCACGACCTACAAAAT+TGG | 0.234450 | tig0029335:-41496 | None:intergenic |
| TACAAGAATATTGATGTTAA+TGG | 0.237026 | tig0029335:+42092 | Msa1441720:CDS |
| GCATTTCCATTGTAATAGTA+TGG | 0.257144 | tig0029335:-42242 | None:intergenic |
| ACTTCCGTGATTTCTCCTTT+TGG | 0.266267 | tig0029335:-41380 | None:intergenic |
| TACTGCTACGCAACAAGTTC+TGG | 0.294127 | tig0029335:-43452 | None:intergenic |
| ACAAGAATATTGATGTTAAT+GGG | 0.303821 | tig0029335:+42093 | Msa1441720:CDS |
| AACAAGAGGATATGTCTATC+TGG | 0.312544 | tig0029335:+43514 | Msa1441720:CDS |
| GGTTATCAGGACCGATGCTT+CGG | 0.326389 | tig0029335:+42161 | Msa1441720:CDS |
| GATATTATTTGCTAGCAAAC+TGG | 0.357133 | tig0029335:+41746 | Msa1441720:CDS |
| AATGAATCTTTCAATTCTCT+TGG | 0.359377 | tig0029335:+41711 | Msa1441720:CDS |
| GGGTCGTGGAAGAATATCTA+TGG | 0.367126 | tig0029335:+41350 | Msa1441720:CDS |
| TGATGTTAATGGGGCTAATT+GGG | 0.367522 | tig0029335:+42103 | Msa1441720:CDS |
| ATTAACATCAATATTCTTGT+AGG | 0.368101 | tig0029335:-42090 | None:intergenic |
| TGGGGCTAATTGGGCCAATC+AGG | 0.372470 | tig0029335:+42112 | Msa1441720:CDS |
| AATGTTAATGATACCTATAA+TGG | 0.373254 | tig0029335:+42137 | Msa1441720:CDS |
| TCTTGAACATCATAGATCTT+AGG | 0.373714 | tig0029335:-41603 | None:intergenic |
| ATGTTAATGATACCTATAAT+GGG | 0.375349 | tig0029335:+42138 | Msa1441720:CDS |
| ATCATTAACATTAACCTGAT+TGG | 0.375551 | tig0029335:-42126 | None:intergenic |
| ATGGTGCGAGCTTTGTATAT+TGG | 0.377737 | tig0029335:-42030 | None:intergenic |
| CGGGCTTCCCAAAATCAATA+TGG | 0.380849 | tig0029335:+42181 | Msa1441720:CDS |
| GTTATCAGGACCGATGCTTC+GGG | 0.385864 | tig0029335:+42162 | Msa1441720:CDS |
| GGGAAAGTGTGCAAGGCAAT+AGG | 0.393610 | tig0029335:-42284 | None:intergenic |
| GATTTGAGAGATTCTGAAAA+GGG | 0.398612 | tig0029335:-42304 | None:intergenic |
| CTTGGGAATCTCACCTTAAG+AGG | 0.415136 | tig0029335:-43393 | None:intergenic |
| TATGCTAAAAGAAGATCATA+AGG | 0.417664 | tig0029335:+41803 | Msa1441720:CDS |
| GGTGTCTGCTACCCCTCTTA+AGG | 0.424800 | tig0029335:+43380 | Msa1441720:CDS |
| TTTCCAAGTGTCCACTCAAA+AGG | 0.425572 | tig0029335:+43419 | Msa1441720:CDS |
| AAGGAAGGATGGAGCTGAAA+AGG | 0.426747 | tig0029335:+42205 | Msa1441720:CDS |
| TTATCACTAATATTCATCAT+TGG | 0.435936 | tig0029335:-41945 | None:intergenic |
| AACATCAACATCACAAAGAA+TGG | 0.436469 | tig0029335:-41454 | None:intergenic |
| ATCCATTCCATTACTGTTGG+AGG | 0.440584 | tig0029335:+43491 | Msa1441720:CDS |
| ACTATAACACAACAAATGAT+AGG | 0.448494 | tig0029335:+41577 | Msa1441720:CDS |
| TTAACATCAATATTCTTGTA+GGG | 0.460944 | tig0029335:-42089 | None:intergenic |
| GTGGACACTTGGAAAAGTCT+TGG | 0.468552 | tig0029335:-43411 | None:intergenic |
| AATCCACGACCTACAAAATT+GGG | 0.470390 | tig0029335:-41495 | None:intergenic |
| TCTATCCATTCCATTACTGT+TGG | 0.473770 | tig0029335:+43488 | Msa1441720:CDS |
| GGAAAGTGTGCAAGGCAATA+GGG | 0.475843 | tig0029335:-42283 | None:intergenic |
| AGATTTGAGAGATTCTGAAA+AGG | 0.476219 | tig0029335:-42305 | None:intergenic |
| TAGTTTCTCTTTACGCACTT+TGG | 0.478267 | tig0029335:-41667 | None:intergenic |
| CAAGCTCATATGTTCATGAA+TGG | 0.478657 | tig0029335:+42374 | Msa1441720:CDS |
| ATCTATGGAACTCATCCAAA+AGG | 0.478947 | tig0029335:+41365 | Msa1441720:CDS |
| GAAGTAGTAACTAGGATTCA+AGG | 0.479038 | tig0029335:-41880 | None:intergenic |
| GAAGGTTGAGAGCTTTGTCC+CGG | 0.483719 | tig0029335:-41996 | None:intergenic |
| TTGAAAGATTCATTCCAAGT+TGG | 0.490806 | tig0029335:-41702 | None:intergenic |
| TGGACACTTGGAAAAGTCTT+GGG | 0.493815 | tig0029335:-43410 | None:intergenic |
| TCACTAATATTCATCATTGG+AGG | 0.494747 | tig0029335:-41942 | None:intergenic |
| ATCAATATGGAAAGGAAGGA+TGG | 0.505258 | tig0029335:+42194 | Msa1441720:CDS |
| CAAAATCAATATGGAAAGGA+AGG | 0.508161 | tig0029335:+42190 | Msa1441720:CDS |
| GTCAACATTTCAAAAGAGAA+AGG | 0.514992 | tig0029335:+41401 | Msa1441720:CDS |
| TTGAAGTGGCCAAAACCCTA+AGG | 0.517435 | tig0029335:-41973 | None:intergenic |
| TCTTGTTCCTCCAACAGTAA+TGG | 0.528355 | tig0029335:-43498 | None:intergenic |
| ACAAGAGGATATGTCTATCT+GGG | 0.536876 | tig0029335:+43515 | Msa1441720:CDS |
| CTCATATGTTCATGAATGGA+AGG | 0.537554 | tig0029335:+42378 | Msa1441720:CDS |
| TCGTCACCATACTATTACAA+TGG | 0.539170 | tig0029335:+42236 | Msa1441720:CDS |
| TTCCTCCAACAGTAATGGAA+TGG | 0.542058 | tig0029335:-43493 | None:intergenic |
| TAAAGATGATGTATCCAACT+TGG | 0.548629 | tig0029335:+41688 | Msa1441720:CDS |
| ATCTTTCAATTCTCTTGGAG+CGG | 0.552140 | tig0029335:+41716 | Msa1441720:CDS |
| ACTTAATGGATTCAATGCTA+AGG | 0.552446 | tig0029335:+42343 | Msa1441720:CDS |
| GGATATGTCTATCTGGGATG+AGG | 0.552655 | tig0029335:+43521 | Msa1441720:CDS |
| ATATTGGAAATCAAAGAAGA+AGG | 0.553651 | tig0029335:-42014 | None:intergenic |
| ATGCTAAAAGAAGATCATAA+GGG | 0.556585 | tig0029335:+41804 | Msa1441720:CDS |
| ACATTTCAAAAGAGAAAGGA+AGG | 0.560555 | tig0029335:+41405 | Msa1441720:CDS |
| GAGCTTTGTCCCGGTTGAAG+TGG | 0.560628 | tig0029335:-41987 | None:intergenic |
| ATGAGATTGAAGTAGTAACT+AGG | 0.569090 | tig0029335:-41888 | None:intergenic |
| ATTACTGTTGGAGGAACAAG+AGG | 0.569445 | tig0029335:+43500 | Msa1441720:CDS |
| TTGGGAATCTCACCTTAAGA+GGG | 0.571012 | tig0029335:-43392 | None:intergenic |
| TGAAGTGGCCAAAACCCTAA+GGG | 0.571128 | tig0029335:-41972 | None:intergenic |
| TATTCGTAGAAAATGGGTCG+TGG | 0.573273 | tig0029335:+41336 | None:intergenic |
| TTCCCAAAATCAATATGGAA+AGG | 0.576621 | tig0029335:+42186 | Msa1441720:CDS |
| CTCGCACCATGTGGAGTCTG+AGG | 0.578924 | tig0029335:+42043 | Msa1441720:CDS |
| TGTTAATGATACCTATAATG+GGG | 0.582350 | tig0029335:+42139 | Msa1441720:CDS |
| CACCATGTGGAGTCTGAGGA+GGG | 0.590680 | tig0029335:+42047 | Msa1441720:CDS |
| TAACATCAATATTCTTGTAG+GGG | 0.591713 | tig0029335:-42088 | None:intergenic |
| TCATCCAAAAGGAGAAATCA+CGG | 0.593512 | tig0029335:+41376 | Msa1441720:CDS |
| CTGAAAAGGGAAAGTGTGCA+AGG | 0.597692 | tig0029335:-42291 | None:intergenic |
| ATATGTTTGTGCTTGAGACA+TGG | 0.597890 | tig0029335:-41919 | None:intergenic |
| ATCTGGGATGAGGAGATGCA+TGG | 0.603930 | tig0029335:+43531 | Msa1441720:CDS |
| CAAGAATATTGATGTTAATG+GGG | 0.607609 | tig0029335:+42094 | Msa1441720:CDS |
| CTATTACAATGGAAATGCAA+TGG | 0.613734 | tig0029335:+42247 | Msa1441720:CDS |
| GCACCATGTGGAGTCTGAGG+AGG | 0.614956 | tig0029335:+42046 | Msa1441720:CDS |
| TACCCTCCTCAGACTCCACA+TGG | 0.630866 | tig0029335:-42049 | None:intergenic |
| GATTTGCTGAACCTGAAACA+TGG | 0.641427 | tig0029335:+41514 | Msa1441720:CDS |
| GAAGTGGCCAAAACCCTAAG+GGG | 0.646061 | tig0029335:-41971 | None:intergenic |
| TAGTAACTAGGATTCAAGGA+AGG | 0.647567 | tig0029335:-41876 | None:intergenic |
| GTTAATGATACCTATAATGG+GGG | 0.651079 | tig0029335:+42140 | Msa1441720:CDS |
| AGAGGGGTAGCAGACACCCA+AGG | 0.659168 | tig0029335:-43375 | None:intergenic |
| AATCTCTCAAATCTACCACA+TGG | 0.661283 | tig0029335:+42314 | Msa1441720:CDS |
| TATACAAAGCTCGCACCATG+TGG | 0.663687 | tig0029335:+42034 | Msa1441720:CDS |
| TGGGAATCTCACCTTAAGAG+GGG | 0.696658 | tig0029335:-43391 | None:intergenic |
| AATAGCTCATGAATCACACA+AGG | 0.705760 | tig0029335:+41833 | Msa1441720:CDS |
| ATGGCCTAAAGACAAAAGAG+AGG | 0.713382 | tig0029335:+41533 | Msa1441720:CDS |
| CCATTAAGTTGAAATCCATG+TGG | 0.755933 | tig0029335:-42329 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAACAAAAATTTCTTTTCT+TGG | + | tig0029335:42511-42530 | Msa1441720:intron | 15.0% |
| !! | TAATACTAATATATAGATGA+GGG | + | tig0029335:42699-42718 | Msa1441720:intron | 15.0% |
| !! | TTTGTTTCATAACATAAAAA+AGG | - | tig0029335:42736-42755 | None:intergenic | 15.0% |
| !!! | ATTTTGAAGAAATTAATGAT+AGG | + | tig0029335:42808-42827 | Msa1441720:intron | 15.0% |
| !!! | TTTTGAAGAAATTAATGATA+GGG | + | tig0029335:42809-42828 | Msa1441720:intron | 15.0% |
| !! | ATAAACTTGAAAATACAAAT+AGG | + | tig0029335:43154-43173 | Msa1441720:intron | 15.0% |
| !! | TTTCTTAATTACAAGTAATT+TGG | + | tig0029335:43190-43209 | Msa1441720:intron | 15.0% |
| !!! | TTAACAAAAATTTCTTTTCT+TGG | + | tig0029335:42511-42530 | Msa1441720:intron | 15.0% |
| !! | TAATACTAATATATAGATGA+GGG | + | tig0029335:42699-42718 | Msa1441720:intron | 15.0% |
| !! | TTTGTTTCATAACATAAAAA+AGG | - | tig0029335:42736-42755 | None:intergenic | 15.0% |
| !!! | ATTTTGAAGAAATTAATGAT+AGG | + | tig0029335:42808-42827 | Msa1441720:intron | 15.0% |
| !!! | TTTTGAAGAAATTAATGATA+GGG | + | tig0029335:42809-42828 | Msa1441720:intron | 15.0% |
| !! | ATAAACTTGAAAATACAAAT+AGG | + | tig0029335:43154-43173 | Msa1441720:intron | 15.0% |
| !! | TTTCTTAATTACAAGTAATT+TGG | + | tig0029335:43190-43209 | Msa1441720:intron | 15.0% |
| !! | TTATCACTAATATTCATCAT+TGG | - | tig0029335:41948-41967 | None:intergenic | 20.0% |
| !! | TTAACATCAATATTCTTGTA+GGG | - | tig0029335:42092-42111 | None:intergenic | 20.0% |
| !! | ATTAACATCAATATTCTTGT+AGG | - | tig0029335:42093-42112 | None:intergenic | 20.0% |
| !! | TACAAGAATATTGATGTTAA+TGG | + | tig0029335:42092-42111 | Msa1441720:CDS | 20.0% |
| !! | ACAAGAATATTGATGTTAAT+GGG | + | tig0029335:42093-42112 | Msa1441720:CDS | 20.0% |
| !! | AATGTTAATGATACCTATAA+TGG | + | tig0029335:42137-42156 | Msa1441720:CDS | 20.0% |
| !! | ATGTTAATGATACCTATAAT+GGG | + | tig0029335:42138-42157 | Msa1441720:CDS | 20.0% |
| !! | CTAATACTAATATATAGATG+AGG | + | tig0029335:42698-42717 | Msa1441720:intron | 20.0% |
| !!! | CACTGATGTAATTTTTATAT+TGG | + | tig0029335:42760-42779 | Msa1441720:intron | 20.0% |
| !! | AATATGACAAACTAAAATGT+TGG | - | tig0029335:42916-42935 | None:intergenic | 20.0% |
| !!! | AGTTATTATTCTAGGATTTA+AGG | - | tig0029335:43126-43145 | None:intergenic | 20.0% |
| !! | CATAACTAAGTTATTATTCT+AGG | - | tig0029335:43134-43153 | None:intergenic | 20.0% |
| !! | AACTATGGATATTTCTTATT+AGG | - | tig0029335:43228-43247 | None:intergenic | 20.0% |
| !! | AGTGACAATATTAATATTCA+TGG | + | tig0029335:43255-43274 | Msa1441720:intron | 20.0% |
| !! | TTATCACTAATATTCATCAT+TGG | - | tig0029335:41948-41967 | None:intergenic | 20.0% |
| !! | TTAACATCAATATTCTTGTA+GGG | - | tig0029335:42092-42111 | None:intergenic | 20.0% |
| !! | ATTAACATCAATATTCTTGT+AGG | - | tig0029335:42093-42112 | None:intergenic | 20.0% |
| !! | TACAAGAATATTGATGTTAA+TGG | + | tig0029335:42092-42111 | Msa1441720:CDS | 20.0% |
| !! | ACAAGAATATTGATGTTAAT+GGG | + | tig0029335:42093-42112 | Msa1441720:CDS | 20.0% |
| !! | AATGTTAATGATACCTATAA+TGG | + | tig0029335:42137-42156 | Msa1441720:CDS | 20.0% |
| !! | ATGTTAATGATACCTATAAT+GGG | + | tig0029335:42138-42157 | Msa1441720:CDS | 20.0% |
| !! | CTAATACTAATATATAGATG+AGG | + | tig0029335:42698-42717 | Msa1441720:intron | 20.0% |
| !!! | CACTGATGTAATTTTTATAT+TGG | + | tig0029335:42760-42779 | Msa1441720:intron | 20.0% |
| !! | AATATGACAAACTAAAATGT+TGG | - | tig0029335:42916-42935 | None:intergenic | 20.0% |
| !!! | AGTTATTATTCTAGGATTTA+AGG | - | tig0029335:43126-43145 | None:intergenic | 20.0% |
| !! | CATAACTAAGTTATTATTCT+AGG | - | tig0029335:43134-43153 | None:intergenic | 20.0% |
| !! | AACTATGGATATTTCTTATT+AGG | - | tig0029335:43228-43247 | None:intergenic | 20.0% |
| !! | AGTGACAATATTAATATTCA+TGG | + | tig0029335:43255-43274 | Msa1441720:intron | 20.0% |
| !! | TTGTGTTATAGTACTTTTGA+AGG | - | tig0029335:41569-41588 | None:intergenic | 25.0% |
| ! | ACTATAACACAACAAATGAT+AGG | + | tig0029335:41577-41596 | Msa1441720:CDS | 25.0% |
| !!! | TGATGTTCAAGAGTATTTTA+AGG | + | tig0029335:41614-41633 | Msa1441720:CDS | 25.0% |
| !!! | TTCAAGAGTATTTTAAGGAA+AGG | + | tig0029335:41619-41638 | Msa1441720:CDS | 25.0% |
| ! | AATGAATCTTTCAATTCTCT+TGG | + | tig0029335:41711-41730 | Msa1441720:CDS | 25.0% |
| ! | TATGCTAAAAGAAGATCATA+AGG | + | tig0029335:41803-41822 | Msa1441720:CDS | 25.0% |
| ! | ATGCTAAAAGAAGATCATAA+GGG | + | tig0029335:41804-41823 | Msa1441720:CDS | 25.0% |
| ! | ATATTGGAAATCAAAGAAGA+AGG | - | tig0029335:42017-42036 | None:intergenic | 25.0% |
| ! | TAACATCAATATTCTTGTAG+GGG | - | tig0029335:42091-42110 | None:intergenic | 25.0% |
| ! | CAAGAATATTGATGTTAATG+GGG | + | tig0029335:42094-42113 | Msa1441720:CDS | 25.0% |
| ! | ATCATTAACATTAACCTGAT+TGG | - | tig0029335:42129-42148 | None:intergenic | 25.0% |
| ! | TGTTAATGATACCTATAATG+GGG | + | tig0029335:42139-42158 | Msa1441720:CDS | 25.0% |
| !!! | TTCCTTTCCATATTGATTTT+GGG | - | tig0029335:42191-42210 | None:intergenic | 25.0% |
| ! | TGGTGCTTATTATATATTTC+TGG | + | tig0029335:42556-42575 | Msa1441720:intron | 25.0% |
| ! | GGTGCTTATTATATATTTCT+GGG | + | tig0029335:42557-42576 | Msa1441720:intron | 25.0% |
| ! | TGGATATTTCTTATTAGGTA+GGG | - | tig0029335:43223-43242 | None:intergenic | 25.0% |
| ! | ATGGATATTTCTTATTAGGT+AGG | - | tig0029335:43224-43243 | None:intergenic | 25.0% |
| !! | TTGTCACTTCAAAATAACTA+TGG | - | tig0029335:43243-43262 | None:intergenic | 25.0% |
| !! | ATTTTTCACTGAGTATTACT+AGG | + | tig0029335:43317-43336 | Msa1441720:intron | 25.0% |
| !! | TTGTGTTATAGTACTTTTGA+AGG | - | tig0029335:41569-41588 | None:intergenic | 25.0% |
| ! | ACTATAACACAACAAATGAT+AGG | + | tig0029335:41577-41596 | Msa1441720:CDS | 25.0% |
| !!! | TGATGTTCAAGAGTATTTTA+AGG | + | tig0029335:41614-41633 | Msa1441720:CDS | 25.0% |
| !!! | TTCAAGAGTATTTTAAGGAA+AGG | + | tig0029335:41619-41638 | Msa1441720:CDS | 25.0% |
| ! | AATGAATCTTTCAATTCTCT+TGG | + | tig0029335:41711-41730 | Msa1441720:CDS | 25.0% |
| ! | TATGCTAAAAGAAGATCATA+AGG | + | tig0029335:41803-41822 | Msa1441720:CDS | 25.0% |
| ! | ATGCTAAAAGAAGATCATAA+GGG | + | tig0029335:41804-41823 | Msa1441720:CDS | 25.0% |
| ! | ATATTGGAAATCAAAGAAGA+AGG | - | tig0029335:42017-42036 | None:intergenic | 25.0% |
| ! | TAACATCAATATTCTTGTAG+GGG | - | tig0029335:42091-42110 | None:intergenic | 25.0% |
| ! | CAAGAATATTGATGTTAATG+GGG | + | tig0029335:42094-42113 | Msa1441720:CDS | 25.0% |
| ! | ATCATTAACATTAACCTGAT+TGG | - | tig0029335:42129-42148 | None:intergenic | 25.0% |
| ! | TGTTAATGATACCTATAATG+GGG | + | tig0029335:42139-42158 | Msa1441720:CDS | 25.0% |
| !!! | TTCCTTTCCATATTGATTTT+GGG | - | tig0029335:42191-42210 | None:intergenic | 25.0% |
| ! | TGGTGCTTATTATATATTTC+TGG | + | tig0029335:42556-42575 | Msa1441720:intron | 25.0% |
| ! | GGTGCTTATTATATATTTCT+GGG | + | tig0029335:42557-42576 | Msa1441720:intron | 25.0% |
| ! | TGGATATTTCTTATTAGGTA+GGG | - | tig0029335:43223-43242 | None:intergenic | 25.0% |
| ! | ATGGATATTTCTTATTAGGT+AGG | - | tig0029335:43224-43243 | None:intergenic | 25.0% |
| !! | TTGTCACTTCAAAATAACTA+TGG | - | tig0029335:43243-43262 | None:intergenic | 25.0% |
| !! | ATTTTTCACTGAGTATTACT+AGG | + | tig0029335:43317-43336 | Msa1441720:intron | 25.0% |
| GTCAACATTTCAAAAGAGAA+AGG | + | tig0029335:41401-41420 | Msa1441720:CDS | 30.0% | |
| ACATTTCAAAAGAGAAAGGA+AGG | + | tig0029335:41405-41424 | Msa1441720:CDS | 30.0% | |
| AACATCAACATCACAAAGAA+TGG | - | tig0029335:41457-41476 | None:intergenic | 30.0% | |
| TCTTGAACATCATAGATCTT+AGG | - | tig0029335:41606-41625 | None:intergenic | 30.0% | |
| TAAAGATGATGTATCCAACT+TGG | + | tig0029335:41688-41707 | Msa1441720:CDS | 30.0% | |
| TTGAAAGATTCATTCCAAGT+TGG | - | tig0029335:41705-41724 | None:intergenic | 30.0% | |
| ! | GATATTATTTGCTAGCAAAC+TGG | + | tig0029335:41746-41765 | Msa1441720:CDS | 30.0% |
| ATGAGATTGAAGTAGTAACT+AGG | - | tig0029335:41891-41910 | None:intergenic | 30.0% | |
| TCACTAATATTCATCATTGG+AGG | - | tig0029335:41945-41964 | None:intergenic | 30.0% | |
| ATTAGTGATAAAAACCCCTT+AGG | + | tig0029335:41957-41976 | Msa1441720:CDS | 30.0% | |
| TTAGTGATAAAAACCCCTTA+GGG | + | tig0029335:41958-41977 | Msa1441720:CDS | 30.0% | |
| GTTAATGATACCTATAATGG+GGG | + | tig0029335:42140-42159 | Msa1441720:CDS | 30.0% | |
| TTCCCAAAATCAATATGGAA+AGG | + | tig0029335:42186-42205 | Msa1441720:CDS | 30.0% | |
| !!! | CTTCCTTTCCATATTGATTT+TGG | - | tig0029335:42192-42211 | None:intergenic | 30.0% |
| CAAAATCAATATGGAAAGGA+AGG | + | tig0029335:42190-42209 | Msa1441720:CDS | 30.0% | |
| GCATTTCCATTGTAATAGTA+TGG | - | tig0029335:42245-42264 | None:intergenic | 30.0% | |
| CTATTACAATGGAAATGCAA+TGG | + | tig0029335:42247-42266 | Msa1441720:CDS | 30.0% | |
| ! | GATTTGAGAGATTCTGAAAA+GGG | - | tig0029335:42307-42326 | None:intergenic | 30.0% |
| ! | AGATTTGAGAGATTCTGAAA+AGG | - | tig0029335:42308-42327 | None:intergenic | 30.0% |
| !! | ACTTAATGGATTCAATGCTA+AGG | + | tig0029335:42343-42362 | Msa1441720:CDS | 30.0% |
| TTTAAGTCGAACAAATAGCT+TGG | + | tig0029335:42536-42555 | Msa1441720:intron | 30.0% | |
| AGAAATTAATGATAGGGAGA+TGG | + | tig0029335:42815-42834 | Msa1441720:intron | 30.0% | |
| ATAAACTTCCTCAATTTCGT+CGG | + | tig0029335:42967-42986 | Msa1441720:intron | 30.0% | |
| AATTTCGTCGGAAATAGAAA+AGG | + | tig0029335:42979-42998 | Msa1441720:intron | 30.0% | |
| AGATAAGGACTACCAATATA+TGG | - | tig0029335:43103-43122 | None:intergenic | 30.0% | |
| !! | TTCTAGGATTTAAGGAGATA+AGG | - | tig0029335:43118-43137 | None:intergenic | 30.0% |
| TTTCTTATTAGGTAGGGTAA+AGG | - | tig0029335:43217-43236 | None:intergenic | 30.0% | |
| GTCAACATTTCAAAAGAGAA+AGG | + | tig0029335:41401-41420 | Msa1441720:CDS | 30.0% | |
| ACATTTCAAAAGAGAAAGGA+AGG | + | tig0029335:41405-41424 | Msa1441720:CDS | 30.0% | |
| AACATCAACATCACAAAGAA+TGG | - | tig0029335:41457-41476 | None:intergenic | 30.0% | |
| TCTTGAACATCATAGATCTT+AGG | - | tig0029335:41606-41625 | None:intergenic | 30.0% | |
| TAAAGATGATGTATCCAACT+TGG | + | tig0029335:41688-41707 | Msa1441720:CDS | 30.0% | |
| TTGAAAGATTCATTCCAAGT+TGG | - | tig0029335:41705-41724 | None:intergenic | 30.0% | |
| ! | GATATTATTTGCTAGCAAAC+TGG | + | tig0029335:41746-41765 | Msa1441720:CDS | 30.0% |
| ATGAGATTGAAGTAGTAACT+AGG | - | tig0029335:41891-41910 | None:intergenic | 30.0% | |
| TCACTAATATTCATCATTGG+AGG | - | tig0029335:41945-41964 | None:intergenic | 30.0% | |
| ATTAGTGATAAAAACCCCTT+AGG | + | tig0029335:41957-41976 | Msa1441720:CDS | 30.0% | |
| TTAGTGATAAAAACCCCTTA+GGG | + | tig0029335:41958-41977 | Msa1441720:CDS | 30.0% | |
| GTTAATGATACCTATAATGG+GGG | + | tig0029335:42140-42159 | Msa1441720:CDS | 30.0% | |
| TTCCCAAAATCAATATGGAA+AGG | + | tig0029335:42186-42205 | Msa1441720:CDS | 30.0% | |
| !!! | CTTCCTTTCCATATTGATTT+TGG | - | tig0029335:42192-42211 | None:intergenic | 30.0% |
| CAAAATCAATATGGAAAGGA+AGG | + | tig0029335:42190-42209 | Msa1441720:CDS | 30.0% | |
| GCATTTCCATTGTAATAGTA+TGG | - | tig0029335:42245-42264 | None:intergenic | 30.0% | |
| CTATTACAATGGAAATGCAA+TGG | + | tig0029335:42247-42266 | Msa1441720:CDS | 30.0% | |
| ! | GATTTGAGAGATTCTGAAAA+GGG | - | tig0029335:42307-42326 | None:intergenic | 30.0% |
| ! | AGATTTGAGAGATTCTGAAA+AGG | - | tig0029335:42308-42327 | None:intergenic | 30.0% |
| !! | ACTTAATGGATTCAATGCTA+AGG | + | tig0029335:42343-42362 | Msa1441720:CDS | 30.0% |
| TTTAAGTCGAACAAATAGCT+TGG | + | tig0029335:42536-42555 | Msa1441720:intron | 30.0% | |
| AGAAATTAATGATAGGGAGA+TGG | + | tig0029335:42815-42834 | Msa1441720:intron | 30.0% | |
| ATAAACTTCCTCAATTTCGT+CGG | + | tig0029335:42967-42986 | Msa1441720:intron | 30.0% | |
| AATTTCGTCGGAAATAGAAA+AGG | + | tig0029335:42979-42998 | Msa1441720:intron | 30.0% | |
| AGATAAGGACTACCAATATA+TGG | - | tig0029335:43103-43122 | None:intergenic | 30.0% | |
| !! | TTCTAGGATTTAAGGAGATA+AGG | - | tig0029335:43118-43137 | None:intergenic | 30.0% |
| TTTCTTATTAGGTAGGGTAA+AGG | - | tig0029335:43217-43236 | None:intergenic | 30.0% | |
| ATCTATGGAACTCATCCAAA+AGG | + | tig0029335:41365-41384 | Msa1441720:CDS | 35.0% | |
| TCATCCAAAAGGAGAAATCA+CGG | + | tig0029335:41376-41395 | Msa1441720:CDS | 35.0% | |
| AATCCACGACCTACAAAATT+GGG | - | tig0029335:41498-41517 | None:intergenic | 35.0% | |
| AAATCCACGACCTACAAAAT+TGG | - | tig0029335:41499-41518 | None:intergenic | 35.0% | |
| ! | TGTACCTCTCTTTTGTCTTT+AGG | - | tig0029335:41540-41559 | None:intergenic | 35.0% |
| TAGTTTCTCTTTACGCACTT+TGG | - | tig0029335:41670-41689 | None:intergenic | 35.0% | |
| ATCTTTCAATTCTCTTGGAG+CGG | + | tig0029335:41716-41735 | Msa1441720:CDS | 35.0% | |
| AATAGCTCATGAATCACACA+AGG | + | tig0029335:41833-41852 | Msa1441720:CDS | 35.0% | |
| TAGTAACTAGGATTCAAGGA+AGG | - | tig0029335:41879-41898 | None:intergenic | 35.0% | |
| GAAGTAGTAACTAGGATTCA+AGG | - | tig0029335:41883-41902 | None:intergenic | 35.0% | |
| ATATGTTTGTGCTTGAGACA+TGG | - | tig0029335:41922-41941 | None:intergenic | 35.0% | |
| ! | ATAAAAACCCCTTAGGGTTT+TGG | + | tig0029335:41964-41983 | Msa1441720:CDS | 35.0% |
| TTGATGTTAATGGGGCTAAT+TGG | + | tig0029335:42102-42121 | Msa1441720:CDS | 35.0% | |
| TGATGTTAATGGGGCTAATT+GGG | + | tig0029335:42103-42122 | Msa1441720:CDS | 35.0% | |
| ATCAATATGGAAAGGAAGGA+TGG | + | tig0029335:42194-42213 | Msa1441720:CDS | 35.0% | |
| TCGTCACCATACTATTACAA+TGG | + | tig0029335:42236-42255 | Msa1441720:CDS | 35.0% | |
| AATCTCTCAAATCTACCACA+TGG | + | tig0029335:42314-42333 | Msa1441720:CDS | 35.0% | |
| !! | CCATTAAGTTGAAATCCATG+TGG | - | tig0029335:42332-42351 | None:intergenic | 35.0% |
| CCACATGGATTTCAACTTAA+TGG | + | tig0029335:42329-42348 | Msa1441720:CDS | 35.0% | |
| CAAGCTCATATGTTCATGAA+TGG | + | tig0029335:42374-42393 | Msa1441720:CDS | 35.0% | |
| CTCATATGTTCATGAATGGA+AGG | + | tig0029335:42378-42397 | Msa1441720:CDS | 35.0% | |
| GCATAACACTTTGAACTTTC+AGG | + | tig0029335:42408-42427 | Msa1441720:intron | 35.0% | |
| AATTAATGATAGGGAGATGG+TGG | + | tig0029335:42818-42837 | Msa1441720:intron | 35.0% | |
| TTCTATTTCCGACGAAATTG+AGG | - | tig0029335:42978-42997 | None:intergenic | 35.0% | |
| ! | TTTTTCTTTTACGCGAGAGT+TGG | + | tig0029335:43024-43043 | Msa1441720:intron | 35.0% |
| !! | CAATATATGGTTGGTTCGAA+TGG | - | tig0029335:43090-43109 | None:intergenic | 35.0% |
| CATTCGAACCAACCATATAT+TGG | + | tig0029335:43088-43107 | Msa1441720:intron | 35.0% | |
| AAGGACTACCAATATATGGT+TGG | - | tig0029335:43099-43118 | None:intergenic | 35.0% | |
| TTCACTGAGTATTACTAGGT+AGG | + | tig0029335:43321-43340 | Msa1441720:intron | 35.0% | |
| TAGGTAGGTTAAGAATGTGA+GGG | + | tig0029335:43336-43355 | Msa1441720:intron | 35.0% | |
| ! | AAGAATGTGAGGGACTTTTT+AGG | + | tig0029335:43346-43365 | Msa1441720:intron | 35.0% |
| !!! | ACTTTTTAGGTGTGATCCTT+GGG | + | tig0029335:43359-43378 | Msa1441720:intron | 35.0% |
| ! | GATTTTTGCTTCCTTTTGAG+TGG | - | tig0029335:43433-43452 | None:intergenic | 35.0% |
| TCTATCCATTCCATTACTGT+TGG | + | tig0029335:43488-43507 | Msa1441720:CDS | 35.0% | |
| AACAAGAGGATATGTCTATC+TGG | + | tig0029335:43514-43533 | Msa1441720:CDS | 35.0% | |
| ACAAGAGGATATGTCTATCT+GGG | + | tig0029335:43515-43534 | Msa1441720:CDS | 35.0% | |
| ATCTATGGAACTCATCCAAA+AGG | + | tig0029335:41365-41384 | Msa1441720:CDS | 35.0% | |
| TCATCCAAAAGGAGAAATCA+CGG | + | tig0029335:41376-41395 | Msa1441720:CDS | 35.0% | |
| AATCCACGACCTACAAAATT+GGG | - | tig0029335:41498-41517 | None:intergenic | 35.0% | |
| AAATCCACGACCTACAAAAT+TGG | - | tig0029335:41499-41518 | None:intergenic | 35.0% | |
| ! | TGTACCTCTCTTTTGTCTTT+AGG | - | tig0029335:41540-41559 | None:intergenic | 35.0% |
| TAGTTTCTCTTTACGCACTT+TGG | - | tig0029335:41670-41689 | None:intergenic | 35.0% | |
| ATCTTTCAATTCTCTTGGAG+CGG | + | tig0029335:41716-41735 | Msa1441720:CDS | 35.0% | |
| AATAGCTCATGAATCACACA+AGG | + | tig0029335:41833-41852 | Msa1441720:CDS | 35.0% | |
| TAGTAACTAGGATTCAAGGA+AGG | - | tig0029335:41879-41898 | None:intergenic | 35.0% | |
| GAAGTAGTAACTAGGATTCA+AGG | - | tig0029335:41883-41902 | None:intergenic | 35.0% | |
| ATATGTTTGTGCTTGAGACA+TGG | - | tig0029335:41922-41941 | None:intergenic | 35.0% | |
| ! | ATAAAAACCCCTTAGGGTTT+TGG | + | tig0029335:41964-41983 | Msa1441720:CDS | 35.0% |
| TTGATGTTAATGGGGCTAAT+TGG | + | tig0029335:42102-42121 | Msa1441720:CDS | 35.0% | |
| TGATGTTAATGGGGCTAATT+GGG | + | tig0029335:42103-42122 | Msa1441720:CDS | 35.0% | |
| ATCAATATGGAAAGGAAGGA+TGG | + | tig0029335:42194-42213 | Msa1441720:CDS | 35.0% | |
| TCGTCACCATACTATTACAA+TGG | + | tig0029335:42236-42255 | Msa1441720:CDS | 35.0% | |
| AATCTCTCAAATCTACCACA+TGG | + | tig0029335:42314-42333 | Msa1441720:CDS | 35.0% | |
| !! | CCATTAAGTTGAAATCCATG+TGG | - | tig0029335:42332-42351 | None:intergenic | 35.0% |
| CCACATGGATTTCAACTTAA+TGG | + | tig0029335:42329-42348 | Msa1441720:CDS | 35.0% | |
| CAAGCTCATATGTTCATGAA+TGG | + | tig0029335:42374-42393 | Msa1441720:CDS | 35.0% | |
| CTCATATGTTCATGAATGGA+AGG | + | tig0029335:42378-42397 | Msa1441720:CDS | 35.0% | |
| GCATAACACTTTGAACTTTC+AGG | + | tig0029335:42408-42427 | Msa1441720:intron | 35.0% | |
| AATTAATGATAGGGAGATGG+TGG | + | tig0029335:42818-42837 | Msa1441720:intron | 35.0% | |
| TTCTATTTCCGACGAAATTG+AGG | - | tig0029335:42978-42997 | None:intergenic | 35.0% | |
| ! | TTTTTCTTTTACGCGAGAGT+TGG | + | tig0029335:43024-43043 | Msa1441720:intron | 35.0% |
| !! | CAATATATGGTTGGTTCGAA+TGG | - | tig0029335:43090-43109 | None:intergenic | 35.0% |
| CATTCGAACCAACCATATAT+TGG | + | tig0029335:43088-43107 | Msa1441720:intron | 35.0% | |
| AAGGACTACCAATATATGGT+TGG | - | tig0029335:43099-43118 | None:intergenic | 35.0% | |
| TTCACTGAGTATTACTAGGT+AGG | + | tig0029335:43321-43340 | Msa1441720:intron | 35.0% | |
| TAGGTAGGTTAAGAATGTGA+GGG | + | tig0029335:43336-43355 | Msa1441720:intron | 35.0% | |
| ! | AAGAATGTGAGGGACTTTTT+AGG | + | tig0029335:43346-43365 | Msa1441720:intron | 35.0% |
| !!! | ACTTTTTAGGTGTGATCCTT+GGG | + | tig0029335:43359-43378 | Msa1441720:intron | 35.0% |
| ! | GATTTTTGCTTCCTTTTGAG+TGG | - | tig0029335:43433-43452 | None:intergenic | 35.0% |
| TCTATCCATTCCATTACTGT+TGG | + | tig0029335:43488-43507 | Msa1441720:CDS | 35.0% | |
| AACAAGAGGATATGTCTATC+TGG | + | tig0029335:43514-43533 | Msa1441720:CDS | 35.0% | |
| ACAAGAGGATATGTCTATCT+GGG | + | tig0029335:43515-43534 | Msa1441720:CDS | 35.0% | |
| ! | ACTTCCGTGATTTCTCCTTT+TGG | - | tig0029335:41383-41402 | None:intergenic | 40.0% |
| ! | CTCTATGCTCCCAATTTTGT+AGG | + | tig0029335:41486-41505 | Msa1441720:CDS | 40.0% |
| !! | GATTTGCTGAACCTGAAACA+TGG | + | tig0029335:41514-41533 | Msa1441720:CDS | 40.0% |
| TTGTCTTTAGGCCATGTTTC+AGG | - | tig0029335:41528-41547 | None:intergenic | 40.0% | |
| ATGGCCTAAAGACAAAAGAG+AGG | + | tig0029335:41533-41552 | Msa1441720:CDS | 40.0% | |
| ! | ATGGTGCGAGCTTTGTATAT+TGG | - | tig0029335:42033-42052 | None:intergenic | 40.0% |
| ! | TACCTATAATGGGGGTTATC+AGG | + | tig0029335:42148-42167 | Msa1441720:CDS | 40.0% |
| AGGAATTAGTTCACCGCTAT+TGG | - | tig0029335:43065-43084 | None:intergenic | 40.0% | |
| !! | TATGGTTGGTTCGAATGGTA+AGG | - | tig0029335:43085-43104 | None:intergenic | 40.0% |
| CTAGGTAGGTTAAGAATGTG+AGG | + | tig0029335:43335-43354 | Msa1441720:intron | 40.0% | |
| !!! | GACTTTTTAGGTGTGATCCT+TGG | + | tig0029335:43358-43377 | Msa1441720:intron | 40.0% |
| TTGGGAATCTCACCTTAAGA+GGG | - | tig0029335:43395-43414 | None:intergenic | 40.0% | |
| TGGACACTTGGAAAAGTCTT+GGG | - | tig0029335:43413-43432 | None:intergenic | 40.0% | |
| TTTCCAAGTGTCCACTCAAA+AGG | + | tig0029335:43419-43438 | Msa1441720:CDS | 40.0% | |
| ATCCATTCCATTACTGTTGG+AGG | + | tig0029335:43491-43510 | Msa1441720:CDS | 40.0% | |
| ! | TTCCTCCAACAGTAATGGAA+TGG | - | tig0029335:43496-43515 | None:intergenic | 40.0% |
| TCTTGTTCCTCCAACAGTAA+TGG | - | tig0029335:43501-43520 | None:intergenic | 40.0% | |
| ATTACTGTTGGAGGAACAAG+AGG | + | tig0029335:43500-43519 | Msa1441720:CDS | 40.0% | |
| ! | ACTTCCGTGATTTCTCCTTT+TGG | - | tig0029335:41383-41402 | None:intergenic | 40.0% |
| ! | CTCTATGCTCCCAATTTTGT+AGG | + | tig0029335:41486-41505 | Msa1441720:CDS | 40.0% |
| !! | GATTTGCTGAACCTGAAACA+TGG | + | tig0029335:41514-41533 | Msa1441720:CDS | 40.0% |
| TTGTCTTTAGGCCATGTTTC+AGG | - | tig0029335:41528-41547 | None:intergenic | 40.0% | |
| ATGGCCTAAAGACAAAAGAG+AGG | + | tig0029335:41533-41552 | Msa1441720:CDS | 40.0% | |
| ! | ATGGTGCGAGCTTTGTATAT+TGG | - | tig0029335:42033-42052 | None:intergenic | 40.0% |
| ! | TACCTATAATGGGGGTTATC+AGG | + | tig0029335:42148-42167 | Msa1441720:CDS | 40.0% |
| AGGAATTAGTTCACCGCTAT+TGG | - | tig0029335:43065-43084 | None:intergenic | 40.0% | |
| !! | TATGGTTGGTTCGAATGGTA+AGG | - | tig0029335:43085-43104 | None:intergenic | 40.0% |
| CTAGGTAGGTTAAGAATGTG+AGG | + | tig0029335:43335-43354 | Msa1441720:intron | 40.0% | |
| !!! | GACTTTTTAGGTGTGATCCT+TGG | + | tig0029335:43358-43377 | Msa1441720:intron | 40.0% |
| TTGGGAATCTCACCTTAAGA+GGG | - | tig0029335:43395-43414 | None:intergenic | 40.0% | |
| TGGACACTTGGAAAAGTCTT+GGG | - | tig0029335:43413-43432 | None:intergenic | 40.0% | |
| TTTCCAAGTGTCCACTCAAA+AGG | + | tig0029335:43419-43438 | Msa1441720:CDS | 40.0% | |
| ATCCATTCCATTACTGTTGG+AGG | + | tig0029335:43491-43510 | Msa1441720:CDS | 40.0% | |
| ! | TTCCTCCAACAGTAATGGAA+TGG | - | tig0029335:43496-43515 | None:intergenic | 40.0% |
| TCTTGTTCCTCCAACAGTAA+TGG | - | tig0029335:43501-43520 | None:intergenic | 40.0% | |
| ATTACTGTTGGAGGAACAAG+AGG | + | tig0029335:43500-43519 | Msa1441720:CDS | 40.0% | |
| GGGTCGTGGAAGAATATCTA+TGG | + | tig0029335:41350-41369 | Msa1441720:CDS | 45.0% | |
| TGAAGTGGCCAAAACCCTAA+GGG | - | tig0029335:41975-41994 | None:intergenic | 45.0% | |
| TTGAAGTGGCCAAAACCCTA+AGG | - | tig0029335:41976-41995 | None:intergenic | 45.0% | |
| TATACAAAGCTCGCACCATG+TGG | + | tig0029335:42034-42053 | Msa1441720:CDS | 45.0% | |
| GTCCTGATAACCCCCATTAT+AGG | - | tig0029335:42153-42172 | None:intergenic | 45.0% | |
| CGGGCTTCCCAAAATCAATA+TGG | + | tig0029335:42181-42200 | Msa1441720:CDS | 45.0% | |
| AAGGAAGGATGGAGCTGAAA+AGG | + | tig0029335:42205-42224 | Msa1441720:CDS | 45.0% | |
| ! | GGAAAGTGTGCAAGGCAATA+GGG | - | tig0029335:42286-42305 | None:intergenic | 45.0% |
| ! | CTGAAAAGGGAAAGTGTGCA+AGG | - | tig0029335:42294-42313 | None:intergenic | 45.0% |
| ATCGAGCTCATGACCAATAG+CGG | + | tig0029335:43049-43068 | Msa1441720:intron | 45.0% | |
| TGGGAATCTCACCTTAAGAG+GGG | - | tig0029335:43394-43413 | None:intergenic | 45.0% | |
| CTTGGGAATCTCACCTTAAG+AGG | - | tig0029335:43396-43415 | None:intergenic | 45.0% | |
| GTGGACACTTGGAAAAGTCT+TGG | - | tig0029335:43414-43433 | None:intergenic | 45.0% | |
| !! | CTTCCTTTTGAGTGGACACT+TGG | - | tig0029335:43425-43444 | None:intergenic | 45.0% |
| TACTGCTACGCAACAAGTTC+TGG | - | tig0029335:43455-43474 | None:intergenic | 45.0% | |
| ! | GGATATGTCTATCTGGGATG+AGG | + | tig0029335:43521-43540 | Msa1441720:CDS | 45.0% |
| GGGTCGTGGAAGAATATCTA+TGG | + | tig0029335:41350-41369 | Msa1441720:CDS | 45.0% | |
| TGAAGTGGCCAAAACCCTAA+GGG | - | tig0029335:41975-41994 | None:intergenic | 45.0% | |
| TTGAAGTGGCCAAAACCCTA+AGG | - | tig0029335:41976-41995 | None:intergenic | 45.0% | |
| TATACAAAGCTCGCACCATG+TGG | + | tig0029335:42034-42053 | Msa1441720:CDS | 45.0% | |
| GTCCTGATAACCCCCATTAT+AGG | - | tig0029335:42153-42172 | None:intergenic | 45.0% | |
| CGGGCTTCCCAAAATCAATA+TGG | + | tig0029335:42181-42200 | Msa1441720:CDS | 45.0% | |
| AAGGAAGGATGGAGCTGAAA+AGG | + | tig0029335:42205-42224 | Msa1441720:CDS | 45.0% | |
| ! | GGAAAGTGTGCAAGGCAATA+GGG | - | tig0029335:42286-42305 | None:intergenic | 45.0% |
| ! | CTGAAAAGGGAAAGTGTGCA+AGG | - | tig0029335:42294-42313 | None:intergenic | 45.0% |
| ATCGAGCTCATGACCAATAG+CGG | + | tig0029335:43049-43068 | Msa1441720:intron | 45.0% | |
| TGGGAATCTCACCTTAAGAG+GGG | - | tig0029335:43394-43413 | None:intergenic | 45.0% | |
| CTTGGGAATCTCACCTTAAG+AGG | - | tig0029335:43396-43415 | None:intergenic | 45.0% | |
| GTGGACACTTGGAAAAGTCT+TGG | - | tig0029335:43414-43433 | None:intergenic | 45.0% | |
| !! | CTTCCTTTTGAGTGGACACT+TGG | - | tig0029335:43425-43444 | None:intergenic | 45.0% |
| TACTGCTACGCAACAAGTTC+TGG | - | tig0029335:43455-43474 | None:intergenic | 45.0% | |
| ! | GGATATGTCTATCTGGGATG+AGG | + | tig0029335:43521-43540 | Msa1441720:CDS | 45.0% |
| ! | GCTCCCAATTTTGTAGGTCG+TGG | + | tig0029335:41492-41511 | Msa1441720:CDS | 50.0% |
| GAAGTGGCCAAAACCCTAAG+GGG | - | tig0029335:41974-41993 | None:intergenic | 50.0% | |
| !! | AGGGTTTTGGCCACTTCAAC+CGG | + | tig0029335:41977-41996 | Msa1441720:CDS | 50.0% |
| ! | GAAGGTTGAGAGCTTTGTCC+CGG | - | tig0029335:41999-42018 | None:intergenic | 50.0% |
| GGTTATCAGGACCGATGCTT+CGG | + | tig0029335:42161-42180 | Msa1441720:CDS | 50.0% | |
| GTTATCAGGACCGATGCTTC+GGG | + | tig0029335:42162-42181 | Msa1441720:CDS | 50.0% | |
| !! | TTTTGGGAAGCCCGAAGCAT+CGG | - | tig0029335:42175-42194 | None:intergenic | 50.0% |
| ! | GGGAAAGTGTGCAAGGCAAT+AGG | - | tig0029335:42287-42306 | None:intergenic | 50.0% |
| ! | ATCTGGGATGAGGAGATGCA+TGG | + | tig0029335:43531-43550 | Msa1441720:CDS | 50.0% |
| ! | GCTCCCAATTTTGTAGGTCG+TGG | + | tig0029335:41492-41511 | Msa1441720:CDS | 50.0% |
| GAAGTGGCCAAAACCCTAAG+GGG | - | tig0029335:41974-41993 | None:intergenic | 50.0% | |
| !! | AGGGTTTTGGCCACTTCAAC+CGG | + | tig0029335:41977-41996 | Msa1441720:CDS | 50.0% |
| ! | GAAGGTTGAGAGCTTTGTCC+CGG | - | tig0029335:41999-42018 | None:intergenic | 50.0% |
| GGTTATCAGGACCGATGCTT+CGG | + | tig0029335:42161-42180 | Msa1441720:CDS | 50.0% | |
| GTTATCAGGACCGATGCTTC+GGG | + | tig0029335:42162-42181 | Msa1441720:CDS | 50.0% | |
| !! | TTTTGGGAAGCCCGAAGCAT+CGG | - | tig0029335:42175-42194 | None:intergenic | 50.0% |
| ! | GGGAAAGTGTGCAAGGCAAT+AGG | - | tig0029335:42287-42306 | None:intergenic | 50.0% |
| ! | ATCTGGGATGAGGAGATGCA+TGG | + | tig0029335:43531-43550 | Msa1441720:CDS | 50.0% |
| !! | GGGTTTTGGCCACTTCAACC+GGG | + | tig0029335:41978-41997 | Msa1441720:CDS | 55.0% |
| ! | GAGCTTTGTCCCGGTTGAAG+TGG | - | tig0029335:41990-42009 | None:intergenic | 55.0% |
| CACCATGTGGAGTCTGAGGA+GGG | + | tig0029335:42047-42066 | Msa1441720:CDS | 55.0% | |
| TACCCTCCTCAGACTCCACA+TGG | - | tig0029335:42052-42071 | None:intergenic | 55.0% | |
| TGGGGCTAATTGGGCCAATC+AGG | + | tig0029335:42112-42131 | Msa1441720:CDS | 55.0% | |
| GGTGTCTGCTACCCCTCTTA+AGG | + | tig0029335:43380-43399 | Msa1441720:CDS | 55.0% | |
| !! | GGGTTTTGGCCACTTCAACC+GGG | + | tig0029335:41978-41997 | Msa1441720:CDS | 55.0% |
| ! | GAGCTTTGTCCCGGTTGAAG+TGG | - | tig0029335:41990-42009 | None:intergenic | 55.0% |
| CACCATGTGGAGTCTGAGGA+GGG | + | tig0029335:42047-42066 | Msa1441720:CDS | 55.0% | |
| TACCCTCCTCAGACTCCACA+TGG | - | tig0029335:42052-42071 | None:intergenic | 55.0% | |
| TGGGGCTAATTGGGCCAATC+AGG | + | tig0029335:42112-42131 | Msa1441720:CDS | 55.0% | |
| GGTGTCTGCTACCCCTCTTA+AGG | + | tig0029335:43380-43399 | Msa1441720:CDS | 55.0% | |
| CTCGCACCATGTGGAGTCTG+AGG | + | tig0029335:42043-42062 | Msa1441720:CDS | 60.0% | |
| GCACCATGTGGAGTCTGAGG+AGG | + | tig0029335:42046-42065 | Msa1441720:CDS | 60.0% | |
| AGAGGGGTAGCAGACACCCA+AGG | - | tig0029335:43378-43397 | None:intergenic | 60.0% | |
| CTCGCACCATGTGGAGTCTG+AGG | + | tig0029335:42043-42062 | Msa1441720:CDS | 60.0% | |
| GCACCATGTGGAGTCTGAGG+AGG | + | tig0029335:42046-42065 | Msa1441720:CDS | 60.0% | |
| AGAGGGGTAGCAGACACCCA+AGG | - | tig0029335:43378-43397 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0029335 | gene | 41348 | 43560 | 41348 | ID=Msa1441720;Name=Msa1441720 |
| tig0029335 | mRNA | 41348 | 43560 | 41348 | ID=Msa1441720-mRNA-1;Parent=Msa1441720;Name=Msa1441720-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|0.5|1|1|2|0|415 |
| tig0029335 | exon | 41348 | 42402 | 41348 | ID=Msa1441720-mRNA-1:exon:12973;Parent=Msa1441720-mRNA-1 |
| tig0029335 | exon | 43368 | 43560 | 43368 | ID=Msa1441720-mRNA-1:exon:12974;Parent=Msa1441720-mRNA-1 |
| tig0029335 | CDS | 41348 | 42402 | 41348 | ID=Msa1441720-mRNA-1:cds;Parent=Msa1441720-mRNA-1 |
| tig0029335 | CDS | 43368 | 43560 | 43368 | ID=Msa1441720-mRNA-1:cds;Parent=Msa1441720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
