Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1442080 | sp|O48686|SNL3_ARATH | 38.384 | 99 | 55 | 1 | 7 | 105 | 12 | 104 | 2.77e-13 | 75.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1442080 | A0A072UV92 | 75.499 | 351 | 84 | 2 | 76 | 425 | 1 | 350 | 3.26e-176 | 505 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1442080 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1442080 | MtrunA17_Chr3g0093911 | 75.499 | 351 | 84 | 2 | 76 | 425 | 1 | 350 | 6.27e-180 | 505 |
| Msa1442080 | MtrunA17_Chr7g0252101 | 64.593 | 418 | 139 | 7 | 14 | 425 | 18 | 432 | 1.23e-171 | 487 |
| Msa1442080 | MtrunA17_Chr1g0207351 | 70.455 | 352 | 97 | 4 | 80 | 425 | 16 | 366 | 7.64e-167 | 473 |
| Msa1442080 | MtrunA17_Chr4g0075971 | 55.149 | 437 | 164 | 9 | 12 | 425 | 175 | 602 | 6.24e-134 | 397 |
| Msa1442080 | MtrunA17_Chr1g0209051 | 71.218 | 271 | 74 | 3 | 157 | 424 | 1 | 270 | 5.12e-127 | 368 |
| Msa1442080 | MtrunA17_Chr3g0077801 | 57.593 | 349 | 138 | 5 | 80 | 422 | 5 | 349 | 1.93e-124 | 364 |
| Msa1442080 | MtrunA17_Chr3g0077901 | 55.525 | 362 | 151 | 5 | 69 | 424 | 14 | 371 | 5.22e-124 | 364 |
| Msa1442080 | MtrunA17_Chr6g0488101 | 48.438 | 448 | 184 | 11 | 17 | 425 | 16 | 455 | 8.17e-122 | 361 |
| Msa1442080 | MtrunA17_Chr6g0488271 | 49.881 | 419 | 170 | 10 | 39 | 425 | 5 | 415 | 2.41e-119 | 353 |
| Msa1442080 | MtrunA17_Chr3g0077851 | 56.047 | 339 | 139 | 5 | 92 | 424 | 1 | 335 | 4.93e-116 | 342 |
| Msa1442080 | MtrunA17_Chr3g0112311 | 53.444 | 363 | 146 | 8 | 76 | 423 | 1 | 355 | 1.28e-112 | 334 |
| Msa1442080 | MtrunA17_Chr7g0243331 | 54.391 | 353 | 145 | 9 | 81 | 425 | 6 | 350 | 7.49e-109 | 325 |
| Msa1442080 | MtrunA17_Chr3g0122991 | 45.538 | 325 | 114 | 6 | 78 | 391 | 2 | 274 | 3.21e-78 | 243 |
| Msa1442080 | MtrunA17_Chr1g0202841 | 71.676 | 173 | 47 | 1 | 255 | 425 | 7 | 179 | 3.93e-78 | 239 |
| Msa1442080 | MtrunA17_Chr6g0452641 | 50.633 | 316 | 132 | 8 | 126 | 425 | 33 | 340 | 1.86e-77 | 244 |
| Msa1442080 | MtrunA17_Chr3g0123471 | 50.746 | 268 | 116 | 8 | 157 | 417 | 1 | 259 | 4.53e-68 | 217 |
| Msa1442080 | MtrunA17_Chr1g0187941 | 64.122 | 131 | 47 | 0 | 255 | 385 | 7 | 137 | 6.38e-47 | 157 |
| Msa1442080 | MtrunA17_Chr1g0196231 | 59.748 | 159 | 54 | 5 | 61 | 217 | 216 | 366 | 1.73e-46 | 164 |
| Msa1442080 | MtrunA17_Chr4g0075861 | 48.241 | 199 | 89 | 2 | 12 | 196 | 175 | 373 | 2.31e-42 | 153 |
| Msa1442080 | MtrunA17_Chr7g0243391 | 46.047 | 215 | 110 | 4 | 72 | 283 | 14 | 225 | 8.45e-41 | 145 |
| Msa1442080 | MtrunA17_Chr1g0206951 | 62.500 | 112 | 41 | 1 | 80 | 190 | 3 | 114 | 1.19e-38 | 135 |
| Msa1442080 | MtrunA17_Chr6g0486591 | 48.148 | 162 | 69 | 4 | 276 | 425 | 1 | 159 | 2.34e-37 | 133 |
| Msa1442080 | MtrunA17_Chr1g0209191 | 63.366 | 101 | 27 | 2 | 331 | 424 | 1 | 98 | 7.57e-33 | 119 |
| Msa1442080 | MtrunA17_Chr1g0196241 | 67.033 | 91 | 26 | 2 | 320 | 409 | 1 | 88 | 1.73e-30 | 112 |
| Msa1442080 | MtrunA17_Chr1g0209061 | 51.695 | 118 | 42 | 3 | 1 | 115 | 2 | 107 | 8.44e-27 | 103 |
| Msa1442080 | MtrunA17_Chr6g0459061 | 29.393 | 313 | 204 | 9 | 83 | 389 | 17 | 318 | 4.72e-23 | 99.8 |
| Msa1442080 | MtrunA17_Chr8g0364231 | 36.752 | 117 | 65 | 3 | 7 | 121 | 40 | 149 | 4.30e-15 | 77.8 |
| Msa1442080 | MtrunA17_Chr1g0206781 | 50.746 | 67 | 33 | 0 | 10 | 76 | 12 | 78 | 5.52e-14 | 68.2 |
| Msa1442080 | MtrunA17_Chr6g0452021 | 38.835 | 103 | 55 | 2 | 9 | 111 | 43 | 137 | 8.65e-14 | 73.2 |
| Msa1442080 | MtrunA17_Chr6g0452001 | 38.384 | 99 | 55 | 1 | 7 | 105 | 61 | 153 | 3.57e-13 | 72.0 |
| Msa1442080 | MtrunA17_Chr5g0415031 | 34.328 | 134 | 73 | 4 | 7 | 132 | 41 | 167 | 5.77e-13 | 71.2 |
| Msa1442080 | MtrunA17_Chr3g0077861 | 53.125 | 64 | 29 | 1 | 9 | 71 | 90 | 153 | 2.43e-11 | 62.0 |
| Msa1442080 | MtrunA17_Chr1g0206771 | 42.857 | 70 | 40 | 0 | 10 | 79 | 17 | 86 | 2.45e-11 | 62.4 |
| Msa1442080 | MtrunA17_Chr1g0206771 | 45.312 | 64 | 35 | 0 | 8 | 71 | 94 | 157 | 4.64e-11 | 61.6 |
| Msa1442080 | MtrunA17_Chr5g0431721 | 50.794 | 63 | 28 | 2 | 14 | 73 | 17 | 79 | 4.38e-11 | 60.1 |
| Msa1442080 | MtrunA17_Chr1g0209201 | 47.619 | 63 | 32 | 1 | 9 | 71 | 16 | 77 | 7.93e-11 | 60.1 |
| Msa1442080 | MtrunA17_Chr3g0077911 | 53.125 | 64 | 29 | 1 | 9 | 71 | 90 | 153 | 8.13e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1442080 | AT1G24190.1 | 38.384 | 99 | 55 | 1 | 7 | 105 | 12 | 104 | 2.81e-14 | 75.9 |
| Msa1442080 | AT1G24190.2 | 38.384 | 99 | 55 | 1 | 7 | 105 | 12 | 104 | 2.89e-14 | 75.9 |
| Msa1442080 | AT1G24190.3 | 38.384 | 99 | 55 | 1 | 7 | 105 | 12 | 104 | 3.03e-14 | 75.5 |
| Msa1442080 | AT3G01320.1 | 32.484 | 157 | 96 | 3 | 7 | 163 | 55 | 201 | 1.22e-13 | 73.9 |
| Msa1442080 | AT3G01320.2 | 32.484 | 157 | 96 | 3 | 7 | 163 | 55 | 201 | 1.32e-13 | 73.6 |
| Msa1442080 | AT1G59890.1 | 45.122 | 82 | 43 | 1 | 9 | 88 | 45 | 126 | 5.83e-13 | 71.6 |
| Msa1442080 | AT1G59890.4 | 45.122 | 82 | 43 | 1 | 9 | 88 | 45 | 126 | 5.97e-13 | 71.6 |
| Msa1442080 | AT1G59890.2 | 45.122 | 82 | 43 | 1 | 9 | 88 | 45 | 126 | 6.04e-13 | 71.6 |
| Msa1442080 | AT1G59890.3 | 45.122 | 82 | 43 | 1 | 9 | 88 | 45 | 126 | 6.14e-13 | 71.6 |
| Msa1442080 | AT1G70060.2 | 49.254 | 67 | 34 | 0 | 7 | 73 | 12 | 78 | 9.20e-13 | 70.9 |
| Msa1442080 | AT1G70060.1 | 49.254 | 67 | 34 | 0 | 7 | 73 | 12 | 78 | 9.20e-13 | 70.9 |
| Msa1442080 | AT5G15020.2 | 40.000 | 100 | 50 | 2 | 7 | 105 | 50 | 140 | 9.58e-13 | 70.9 |
| Msa1442080 | AT5G15020.1 | 40.000 | 100 | 50 | 2 | 7 | 105 | 50 | 140 | 9.68e-13 | 70.9 |
| Msa1442080 | AT1G27250.1 | 41.429 | 70 | 41 | 0 | 8 | 77 | 20 | 89 | 1.82e-11 | 62.0 |
| Msa1442080 | AT1G10450.3 | 43.182 | 88 | 48 | 1 | 9 | 94 | 84 | 171 | 4.57e-11 | 65.5 |
| Msa1442080 | AT1G10450.2 | 43.182 | 88 | 48 | 1 | 9 | 94 | 33 | 120 | 4.60e-11 | 65.5 |
| Msa1442080 | AT1G10450.1 | 43.182 | 88 | 48 | 1 | 9 | 94 | 33 | 120 | 4.60e-11 | 65.5 |
| Msa1442080 | AT1G27220.1 | 45.312 | 64 | 35 | 0 | 8 | 71 | 13 | 76 | 6.70e-11 | 61.6 |
Find 111 sgRNAs with CRISPR-Local
Find 442 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCACACTATGCTATTTA+TGG | 0.127504 | tig0029620:+24561 | Msa1442080:three_prime_UTR |
| AGGGCATGCGGATTTAATTT+TGG | 0.145300 | tig0029620:+19272 | Msa1442080:CDS |
| AATTTATTGTACAGATTTCT+TGG | 0.205775 | tig0029620:+23626 | Msa1442080:CDS |
| ATCCCTGCCGCTTCAGAATT+AGG | 0.217186 | tig0029620:+18918 | Msa1442080:five_prime_UTR |
| AGGATATTTATGGTTAATTA+TGG | 0.221186 | tig0029620:+24715 | Msa1442080:three_prime_UTR |
| CGGTGCATCATCGCTGTATT+GGG | 0.229204 | tig0029620:-19112 | None:intergenic |
| ATGAAAAGCCCTCCAATTCT+TGG | 0.251271 | tig0029620:-23601 | None:intergenic |
| CTCTCATATCCCAACATGTT+CGG | 0.285471 | tig0029620:-24356 | None:intergenic |
| ATCAAGCCCCTTGTTTCTTT+AGG | 0.288942 | tig0029620:-24473 | None:intergenic |
| CCGGTGCATCATCGCTGTAT+TGG | 0.295604 | tig0029620:-19113 | None:intergenic |
| TTCCAGTTTAACATAATTCA+TGG | 0.317274 | tig0029620:-24264 | None:intergenic |
| GGTAATTGAGCGGCGGCGGC+AGG | 0.318842 | tig0029620:-18961 | None:intergenic |
| TCCCTGCCGCTTCAGAATTA+GGG | 0.322089 | tig0029620:+18919 | Msa1442080:five_prime_UTR |
| ATTTAGTGACCAAGGAAATA+AGG | 0.328158 | tig0029620:+24216 | Msa1442080:CDS |
| AACCATGAATTATGTTAAAC+TGG | 0.336657 | tig0029620:+24262 | Msa1442080:CDS |
| TCTCCAAGTGACAAACTTCT+TGG | 0.338447 | tig0029620:-23722 | None:intergenic |
| ACAGTGAAAGAGCTGCTTAA+AGG | 0.342144 | tig0029620:+19252 | Msa1442080:CDS |
| AAGTTGCATTTGAATATAAC+AGG | 0.344234 | tig0029620:+19154 | Msa1442080:CDS |
| TTGCACACTATGCTATTTAT+GGG | 0.351023 | tig0029620:+24562 | Msa1442080:three_prime_UTR |
| AAGTCAACAACCCACTCTTC+TGG | 0.351816 | tig0029620:-24026 | None:intergenic |
| GTACACATTCCTTATTTCCT+TGG | 0.353111 | tig0029620:-24225 | None:intergenic |
| GACGACCTGTTTCAATTTGC+GGG | 0.355744 | tig0029620:+23573 | Msa1442080:CDS |
| TTTATGCTAATCAATCCTTT+TGG | 0.356191 | tig0029620:+23822 | Msa1442080:CDS |
| TTATGTTAAACTGGAAACTT+TGG | 0.357767 | tig0029620:+24271 | Msa1442080:CDS |
| TCAAATATCGTACCATGTTA+AGG | 0.362512 | tig0029620:+23671 | Msa1442080:CDS |
| TTGCGGGAGTGTCCAAGAAT+TGG | 0.376727 | tig0029620:+23589 | Msa1442080:CDS |
| AAGAGAAATGTGAAATTCCT+TGG | 0.379476 | tig0029620:+23514 | Msa1442080:CDS |
| TCTCATATCCCAACATGTTC+GGG | 0.382736 | tig0029620:-24355 | None:intergenic |
| CAGTGAAAGAGCTGCTTAAA+GGG | 0.389126 | tig0029620:+19253 | Msa1442080:CDS |
| GTCGTCAAAATCTAGTGTTT+TGG | 0.396017 | tig0029620:-23556 | None:intergenic |
| TAAAACTCCTAAAATATTTG+AGG | 0.399854 | tig0029620:+19196 | Msa1442080:CDS |
| TAAAGAAACAAGGGGCTTGA+TGG | 0.406291 | tig0029620:+24475 | Msa1442080:CDS |
| ACCTTCTTTATTCTTCCAAA+AGG | 0.407824 | tig0029620:-23837 | None:intergenic |
| TAACATCTTCCCTGTACCTT+AGG | 0.407834 | tig0029620:+24159 | Msa1442080:CDS |
| TTGGTCGGATATGTTAATAA+AGG | 0.414674 | tig0029620:-23703 | None:intergenic |
| ACTACAAGTATTTCAAACTT+TGG | 0.418213 | tig0029620:-24626 | None:intergenic |
| CTTTGAGGAATTTGTCTTGG+TGG | 0.421813 | tig0029620:+23929 | Msa1442080:CDS |
| TGATGCACCGGCGCATCTTA+AGG | 0.422394 | tig0029620:+19125 | Msa1442080:CDS |
| AGATGTAACGTAGGTAGAAC+GGG | 0.422808 | tig0029620:-23760 | None:intergenic |
| TATGTTAAACTGGAAACTTT+GGG | 0.423373 | tig0029620:+24272 | Msa1442080:CDS |
| CCCCTTGTTTCTTTAGGAGC+TGG | 0.423537 | tig0029620:-24467 | None:intergenic |
| CTATATGCAATGCGTATTCA+TGG | 0.432169 | tig0029620:+24411 | Msa1442080:CDS |
| CTCCTAAAATATTTGAGGGC+TGG | 0.441372 | tig0029620:+19201 | Msa1442080:CDS |
| GCAGGGATTAAGAGTGTCTC+TGG | 0.449929 | tig0029620:-18943 | None:intergenic |
| AAAACTCCTAAAATATTTGA+GGG | 0.450495 | tig0029620:+19197 | Msa1442080:CDS |
| ATCAATCTAGAAATTGTGGT+TGG | 0.452707 | tig0029620:+23979 | Msa1442080:CDS |
| CGAGGTGCATACCAATGGAT+TGG | 0.458384 | tig0029620:-19001 | None:intergenic |
| TGACGACCTGTTTCAATTTG+CGG | 0.460057 | tig0029620:+23572 | Msa1442080:CDS |
| TTGAGCAACCCGAACATGTT+GGG | 0.469753 | tig0029620:+24347 | Msa1442080:CDS |
| AATTAACCAACCTAAGGTAC+AGG | 0.471897 | tig0029620:-24169 | None:intergenic |
| CGACCAAGAAGTTTGTCACT+TGG | 0.478402 | tig0029620:+23719 | Msa1442080:CDS |
| GACCCTAATTCTGAAGCGGC+AGG | 0.482450 | tig0029620:-18921 | None:intergenic |
| TACGATATTTGAAGAAGTAA+TGG | 0.485018 | tig0029620:-23660 | None:intergenic |
| ACACTCCCGCAAATTGAAAC+AGG | 0.489642 | tig0029620:-23578 | None:intergenic |
| TTCAACACCTCCATGCCAAC+CGG | 0.494395 | tig0029620:+19297 | Msa1442080:CDS |
| AAAGTTTGAAATACTTGTAG+TGG | 0.498814 | tig0029620:+24628 | Msa1442080:three_prime_UTR |
| CATCTACTTGTGCGATGCAC+AGG | 0.500835 | tig0029620:+24682 | Msa1442080:three_prime_UTR |
| GTAATTGAGCGGCGGCGGCA+GGG | 0.506520 | tig0029620:-18960 | None:intergenic |
| TTTGGGTAATTGAGCGGCGG+CGG | 0.507014 | tig0029620:-18965 | None:intergenic |
| TCAATCTAGAAATTGTGGTT+GGG | 0.508243 | tig0029620:+23980 | Msa1442080:CDS |
| TACAGGGAAGATGTTACATT+GGG | 0.510355 | tig0029620:-24152 | None:intergenic |
| ATCTTCCCTGTACCTTAGGT+TGG | 0.512444 | tig0029620:+24163 | Msa1442080:CDS |
| CGGGAGTGTCCAAGAATTGG+AGG | 0.514347 | tig0029620:+23592 | Msa1442080:CDS |
| GTCTATCAATCTAGAAATTG+TGG | 0.515725 | tig0029620:+23975 | Msa1442080:CDS |
| TAAAGAGCAGCTAACTTCAA+AGG | 0.520859 | tig0029620:-23874 | None:intergenic |
| CCAATACAGCGATGATGCAC+CGG | 0.521578 | tig0029620:+19113 | Msa1442080:CDS |
| GTTACTAACAAGGCCAACAT+AGG | 0.523104 | tig0029620:+24077 | Msa1442080:CDS |
| GCTGGAAGAATTGATATAAG+AGG | 0.530041 | tig0029620:+19219 | Msa1442080:CDS |
| CAAGGGGCTTGATGGTCGAT+TGG | 0.533995 | tig0029620:+24483 | Msa1442080:CDS |
| AGAGTGGGTTGTTGACTTTG+TGG | 0.534454 | tig0029620:+24031 | Msa1442080:CDS |
| AAGATGTAACGTAGGTAGAA+CGG | 0.535305 | tig0029620:-23761 | None:intergenic |
| TTCCAGCTCCTAAAGAAACA+AGG | 0.537130 | tig0029620:+24465 | Msa1442080:CDS |
| ATGCTTTGAGGAATTTGTCT+TGG | 0.537152 | tig0029620:+23926 | Msa1442080:CDS |
| GAGCAGCTAACTTCAAAGGT+AGG | 0.547115 | tig0029620:-23870 | None:intergenic |
| CAGCTCTTTCACTGTTGCTA+CGG | 0.547714 | tig0029620:-19244 | None:intergenic |
| TTACTAACAAGGCCAACATA+GGG | 0.549311 | tig0029620:+24078 | Msa1442080:CDS |
| AGCCTTCAAAACCAATCCAT+TGG | 0.549664 | tig0029620:+18990 | Msa1442080:five_prime_UTR |
| AAACAACGAACCGGTTGGCA+TGG | 0.554636 | tig0029620:-19307 | None:intergenic |
| AGAGAAATGTGAAATTCCTT+GGG | 0.559333 | tig0029620:+23515 | Msa1442080:CDS |
| GGTGCATCATCGCTGTATTG+GGG | 0.561905 | tig0029620:-19111 | None:intergenic |
| CAAGCTGAGGACCCCTATGT+TGG | 0.565610 | tig0029620:-24090 | None:intergenic |
| TATATGCAATGCGTATTCAT+GGG | 0.572763 | tig0029620:+24412 | Msa1442080:CDS |
| CATCACAATTAACCAACCTA+AGG | 0.573573 | tig0029620:-24175 | None:intergenic |
| TCCAGCTCCTAAAGAAACAA+GGG | 0.574457 | tig0029620:+24466 | Msa1442080:CDS |
| TTGGGTTACTTATTCGACAA+TGG | 0.577987 | tig0029620:+23998 | Msa1442080:CDS |
| GTACAGGGAAGATGTTACAT+TGG | 0.580808 | tig0029620:-24153 | None:intergenic |
| TTTAATACCTTAAGATGCGC+CGG | 0.581231 | tig0029620:-19132 | None:intergenic |
| AGTGGTTGATTTAGTGACCA+AGG | 0.584953 | tig0029620:+24208 | Msa1442080:CDS |
| ATTGAGCAACCCGAACATGT+TGG | 0.593120 | tig0029620:+24346 | Msa1442080:CDS |
| TATAGTCGATAAAAGACTGA+TGG | 0.593407 | tig0029620:-24393 | None:intergenic |
| GGCTGATTTGGGTAATTGAG+CGG | 0.597982 | tig0029620:-18971 | None:intergenic |
| AATGGAAAATCCAGAAGAGT+GGG | 0.599996 | tig0029620:+24016 | Msa1442080:CDS |
| CAATGGAAAATCCAGAAGAG+TGG | 0.600975 | tig0029620:+24015 | Msa1442080:CDS |
| CAAGTGACAAACTTCTTGGT+CGG | 0.604533 | tig0029620:-23718 | None:intergenic |
| ACCCTAATTCTGAAGCGGCA+GGG | 0.621690 | tig0029620:-18920 | None:intergenic |
| GTGCATCATCGCTGTATTGG+GGG | 0.628593 | tig0029620:-19110 | None:intergenic |
| TCTGGACCCTAATTCTGAAG+CGG | 0.631444 | tig0029620:-18925 | None:intergenic |
| TGATTTGGGTAATTGAGCGG+CGG | 0.632087 | tig0029620:-18968 | None:intergenic |
| CAACGAACCGGTTGGCATGG+AGG | 0.634732 | tig0029620:-19304 | None:intergenic |
| GGGAGTGTCCAAGAATTGGA+GGG | 0.640462 | tig0029620:+23593 | Msa1442080:CDS |
| TATTTGCAGAATTCAAGCTG+AGG | 0.642615 | tig0029620:-24103 | None:intergenic |
| ATGATGTTAAGCACATCCCA+AGG | 0.645185 | tig0029620:-23531 | None:intergenic |
| AGGAATATGATTCCTTAACA+TGG | 0.646546 | tig0029620:-23683 | None:intergenic |
| AATATATGTTGTTACTAACA+AGG | 0.647704 | tig0029620:+24067 | Msa1442080:CDS |
| ATTAACCAACCTAAGGTACA+GGG | 0.657342 | tig0029620:-24168 | None:intergenic |
| AGAGCTGCTTAAAGGGCATG+CGG | 0.660316 | tig0029620:+19260 | Msa1442080:CDS |
| TACTAACAAGGCCAACATAG+GGG | 0.674261 | tig0029620:+24079 | Msa1442080:CDS |
| CCAGCTCCTAAAGAAACAAG+GGG | 0.690079 | tig0029620:+24467 | Msa1442080:CDS |
| TCTGCTAGAAGATGTAACGT+AGG | 0.694211 | tig0029620:-23769 | None:intergenic |
| GATGTAACGTAGGTAGAACG+GGG | 0.721948 | tig0029620:-23759 | None:intergenic |
| ATGTAACGTAGGTAGAACGG+GGG | 0.776817 | tig0029620:-23758 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAACAAAAAATCTAAA+AGG | + | tig0029620:21287-21306 | Msa1442080:intron | 10.0% |
| !! | AATAATAAACCTAAAAAAAT+TGG | - | tig0029620:22657-22676 | None:intergenic | 10.0% |
| !!! | TTATTCTAAAATTTTAATTC+TGG | + | tig0029620:22900-22919 | Msa1442080:intron | 10.0% |
| !! | AAAAAAATATTGAATTGCAA+TGG | - | tig0029620:19335-19354 | None:intergenic | 15.0% |
| !! | ATTTAATCAAACTATATTCA+AGG | + | tig0029620:19419-19438 | Msa1442080:intron | 15.0% |
| !! | TTGGTTTAAAAAAAAAACAA+GGG | + | tig0029620:19707-19726 | Msa1442080:intron | 15.0% |
| !! | AAACAAAAACAACAAAAATA+AGG | - | tig0029620:20007-20026 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTTTATGAAATAG+CGG | + | tig0029620:20018-20037 | Msa1442080:intron | 15.0% |
| !!! | TTTACTATTCCAATTTTTTT+AGG | + | tig0029620:22645-22664 | Msa1442080:intron | 15.0% |
| !!! | CATATTTTATAGGATATTTA+TGG | + | tig0029620:24705-24724 | Msa1442080:three_prime_UTR | 15.0% |
| !! | TAAAACTCCTAAAATATTTG+AGG | + | tig0029620:19196-19215 | Msa1442080:CDS | 20.0% |
| !! | AAAACTCCTAAAATATTTGA+GGG | + | tig0029620:19197-19216 | Msa1442080:CDS | 20.0% |
| !! | TTTCTCTTAAAATGAAATAG+CGG | - | tig0029620:19673-19692 | None:intergenic | 20.0% |
| !!! | CTTGTTTTTTTTTTAAACCA+AGG | - | tig0029620:19708-19727 | None:intergenic | 20.0% |
| !! | CTTGGTTTAAAAAAAAAACA+AGG | + | tig0029620:19706-19725 | Msa1442080:intron | 20.0% |
| !!! | TCTAGTTTTCTTTGTTATTA+TGG | + | tig0029620:19883-19902 | Msa1442080:intron | 20.0% |
| !! | CAAAGATTATATAACTATGA+TGG | - | tig0029620:20263-20282 | None:intergenic | 20.0% |
| !! | CATAGTTATATAATCTTTGT+TGG | + | tig0029620:20264-20283 | Msa1442080:intron | 20.0% |
| !! | ATCAAATTAGTCACTAAATT+AGG | - | tig0029620:20307-20326 | None:intergenic | 20.0% |
| !!! | TGTTTTACACAATTTATTGA+TGG | + | tig0029620:20329-20348 | Msa1442080:intron | 20.0% |
| !!! | TTTTTTTAATTGTAAAGCTC+TGG | - | tig0029620:20550-20569 | None:intergenic | 20.0% |
| !! | ACTAAAAGATGAAATTATCA+TGG | + | tig0029620:20575-20594 | Msa1442080:intron | 20.0% |
| !! | AACTATAAGAGAAACTATTT+AGG | + | tig0029620:20785-20804 | Msa1442080:intron | 20.0% |
| !! | GTTATATCATAAACCATATT+TGG | - | tig0029620:20838-20857 | None:intergenic | 20.0% |
| !! | AATCTAAAAGGAATGTATTA+AGG | + | tig0029620:21299-21318 | Msa1442080:intron | 20.0% |
| !!! | TTTCTCTTGTATTTTTTTCT+AGG | - | tig0029620:22148-22167 | None:intergenic | 20.0% |
| !! | TACAAATAAAAACAATAGAG+TGG | - | tig0029620:22616-22635 | None:intergenic | 20.0% |
| !! | ATGATACTCGAATAAAAAAA+GGG | - | tig0029620:22867-22886 | None:intergenic | 20.0% |
| !! | AATGATACTCGAATAAAAAA+AGG | - | tig0029620:22868-22887 | None:intergenic | 20.0% |
| !!! | TTCCATTTTTCTTTTTTGTT+TGG | + | tig0029620:23032-23051 | Msa1442080:intron | 20.0% |
| !!! | TCCATTTTTCTTTTTTGTTT+GGG | + | tig0029620:23033-23052 | Msa1442080:intron | 20.0% |
| !! | AATTTATTGTACAGATTTCT+TGG | + | tig0029620:23626-23645 | Msa1442080:CDS | 20.0% |
| !! | AATATATGTTGTTACTAACA+AGG | + | tig0029620:24067-24086 | Msa1442080:CDS | 20.0% |
| !!! | GCATTATTTTCTATTTCAAA+TGG | + | tig0029620:24302-24321 | Msa1442080:CDS | 20.0% |
| !!! | ACCTCGAATCATTTATTTTT+TGG | + | tig0029620:19018-19037 | Msa1442080:intron | 25.0% |
| ! | ACCAAAAAATAAATGATTCG+AGG | - | tig0029620:19022-19041 | None:intergenic | 25.0% |
| !!! | TCATTTTTTCTCAATGAAGA+TGG | + | tig0029620:19083-19102 | Msa1442080:intron | 25.0% |
| ! | AAGTTGCATTTGAATATAAC+AGG | + | tig0029620:19154-19173 | Msa1442080:CDS | 25.0% |
| ! | AGAAAATACAAAATTGTCCT+TGG | + | tig0029620:19688-19707 | Msa1442080:intron | 25.0% |
| ! | AACTAGAACAAAAAAGTAAC+AGG | - | tig0029620:19870-19889 | None:intergenic | 25.0% |
| !! | GTTTTATATGAACAAAACAG+AGG | - | tig0029620:19963-19982 | None:intergenic | 25.0% |
| ! | GTCACTATATATAACTATGA+TGG | - | tig0029620:20169-20188 | None:intergenic | 25.0% |
| !!! | TTTTTTATGTAATGACCTGA+TGG | + | tig0029620:20418-20437 | Msa1442080:intron | 25.0% |
| !! | AGAGTATTCAAATAGAAGTT+AGG | + | tig0029620:20460-20479 | Msa1442080:intron | 25.0% |
| ! | GAGTATTCAAATAGAAGTTA+GGG | + | tig0029620:20461-20480 | Msa1442080:intron | 25.0% |
| ! | AGTATTCAAATAGAAGTTAG+GGG | + | tig0029620:20462-20481 | Msa1442080:intron | 25.0% |
| ! | AAGATGAAATTATCATGGTT+AGG | + | tig0029620:20580-20599 | Msa1442080:intron | 25.0% |
| ! | AGATGAAATTATCATGGTTA+GGG | + | tig0029620:20581-20600 | Msa1442080:intron | 25.0% |
| !! | GTTTCTCTTATAGTTTTTCT+AGG | - | tig0029620:20780-20799 | None:intergenic | 25.0% |
| ! | ACTATTTAGGAAAGATTTAG+AGG | + | tig0029620:20798-20817 | Msa1442080:intron | 25.0% |
| ! | ATAAAGAATCCAAACAGAAT+GGG | - | tig0029620:21052-21071 | None:intergenic | 25.0% |
| ! | AATAAAGAATCCAAACAGAA+TGG | - | tig0029620:21053-21072 | None:intergenic | 25.0% |
| !! | TCTAGAATAAACATAACTTG+TGG | + | tig0029620:21149-21168 | Msa1442080:intron | 25.0% |
| ! | AAGTGGACAAAGTTAAATAT+TGG | - | tig0029620:21189-21208 | None:intergenic | 25.0% |
| ! | AAACATGTATACTATGAAGA+AGG | - | tig0029620:21234-21253 | None:intergenic | 25.0% |
| !!! | TTGCATGAATATTTTTTCGA+AGG | + | tig0029620:21264-21283 | Msa1442080:intron | 25.0% |
| !!! | AAACTTGTTCTTTTCTATCT+AGG | - | tig0029620:21432-21451 | None:intergenic | 25.0% |
| !!! | TTTTATTTTATTTCAGCCCA+CGG | - | tig0029620:21621-21640 | None:intergenic | 25.0% |
| ! | TCTAGAAAACTACTAAGATT+TGG | + | tig0029620:21660-21679 | Msa1442080:intron | 25.0% |
| ! | ATAAGTTAAGATGATGACAA+GGG | - | tig0029620:21854-21873 | None:intergenic | 25.0% |
| ! | AATAAGTTAAGATGATGACA+AGG | - | tig0029620:21855-21874 | None:intergenic | 25.0% |
| !! | GTCATCATCTTAACTTATTT+TGG | + | tig0029620:21856-21875 | Msa1442080:intron | 25.0% |
| !! | AACAAATTTTCTGAATGCAA+GGG | - | tig0029620:21916-21935 | None:intergenic | 25.0% |
| !! | GACTATATTTTACGATAGTA+TGG | + | tig0029620:21969-21988 | Msa1442080:intron | 25.0% |
| ! | TAAAACCTTTATCACCTTAT+AGG | + | tig0029620:22529-22548 | Msa1442080:intron | 25.0% |
| ! | AAAGACAAAAATGACCTATA+AGG | - | tig0029620:22546-22565 | None:intergenic | 25.0% |
| ! | TTTGTCTTTGATTGGATTAA+CGG | + | tig0029620:22557-22576 | Msa1442080:intron | 25.0% |
| !!! | TGGTATCTTTTATTGATTCT+TGG | + | tig0029620:22920-22939 | Msa1442080:intron | 25.0% |
| ! | GAAATATAAGACATAGGAAA+AGG | - | tig0029620:23011-23030 | None:intergenic | 25.0% |
| ! | TGGAAAGAAATATAAGACAT+AGG | - | tig0029620:23017-23036 | None:intergenic | 25.0% |
| ! | ACCCAAACAAAAAAGAAAAA+TGG | - | tig0029620:23037-23056 | None:intergenic | 25.0% |
| !!! | TTTTCCTATTTTTGTGATCA+TGG | - | tig0029620:23115-23134 | None:intergenic | 25.0% |
| !! | CATGTATTTGTATTTTATGC+TGG | + | tig0029620:23172-23191 | Msa1442080:intron | 25.0% |
| !!! | ATTTGTATTTTATGCTGGTT+CGG | + | tig0029620:23177-23196 | Msa1442080:intron | 25.0% |
| !! | TCTTTCTTTGTATTTTATGC+TGG | + | tig0029620:23234-23253 | Msa1442080:intron | 25.0% |
| !! | TCTTTCTTTGTATTTTATGC+TGG | + | tig0029620:23234-23253 | Msa1442080:intron | 25.0% |
| ! | ATGCTATTATCAGATAAACT+CGG | + | tig0029620:23378-23397 | Msa1442080:intron | 25.0% |
| !! | TTTGAAGAAGTAATGGTTTT+CGG | - | tig0029620:23656-23675 | None:intergenic | 25.0% |
| ! | TACGATATTTGAAGAAGTAA+TGG | - | tig0029620:23663-23682 | None:intergenic | 25.0% |
| !! | TTTATGCTAATCAATCCTTT+TGG | + | tig0029620:23822-23841 | Msa1442080:CDS | 25.0% |
| ! | AACCATGAATTATGTTAAAC+TGG | + | tig0029620:24262-24281 | Msa1442080:CDS | 25.0% |
| ! | TTCCAGTTTAACATAATTCA+TGG | - | tig0029620:24267-24286 | None:intergenic | 25.0% |
| ! | TTATGTTAAACTGGAAACTT+TGG | + | tig0029620:24271-24290 | Msa1442080:CDS | 25.0% |
| ! | TATGTTAAACTGGAAACTTT+GGG | + | tig0029620:24272-24291 | Msa1442080:CDS | 25.0% |
| ! | ACTACAAGTATTTCAAACTT+TGG | - | tig0029620:24629-24648 | None:intergenic | 25.0% |
| !! | AAAGTTTGAAATACTTGTAG+TGG | + | tig0029620:24628-24647 | Msa1442080:three_prime_UTR | 25.0% |
| TTTGCCATAGTAGTCAATAA+CGG | + | tig0029620:19539-19558 | Msa1442080:intron | 30.0% | |
| GAAACCATAGTAGTTAATAG+CGG | - | tig0029620:20105-20124 | None:intergenic | 30.0% | |
| !! | GCAGATATATTGATTCAGTA+TGG | - | tig0029620:19513-19532 | None:intergenic | 30.0% |
| TACAAAGTATAGCAGAAACA+AGG | - | tig0029620:20213-20232 | None:intergenic | 30.0% | |
| !! | TAAAGCTCTGGAATATTGTA+TGG | - | tig0029620:20538-20557 | None:intergenic | 30.0% |
| GATGAAATTATCATGGTTAG+GGG | + | tig0029620:20582-20601 | Msa1442080:intron | 30.0% | |
| TAAGAAAGATGGTAGCAAAT+AGG | + | tig0029620:20651-20670 | Msa1442080:intron | 30.0% | |
| ATGAAAAGTAGATCAGACAA+AGG | + | tig0029620:20723-20742 | Msa1442080:intron | 30.0% | |
| AGATTTAGAGGTTATTGAGT+TGG | + | tig0029620:20810-20829 | Msa1442080:intron | 30.0% | |
| !! | TATTGAGTTGGTTCCAAATA+TGG | + | tig0029620:20822-20841 | Msa1442080:intron | 30.0% |
| !! | ATTACCATGAAAAAGTACCA+TGG | + | tig0029620:20935-20954 | Msa1442080:intron | 30.0% |
| !!! | GTGACAAATTTTTTGGTATG+TGG | - | tig0029620:20984-21003 | None:intergenic | 30.0% |
| ! | TGCTGAGTTGGAAAAAAAAA+GGG | - | tig0029620:21078-21097 | None:intergenic | 30.0% |
| ! | ATGCTGAGTTGGAAAAAAAA+AGG | - | tig0029620:21079-21098 | None:intergenic | 30.0% |
| GACAAAGTTAAATATTGGTG+TGG | - | tig0029620:21184-21203 | None:intergenic | 30.0% | |
| GAATGTATTAAGGTTTAGAG+AGG | + | tig0029620:21309-21328 | Msa1442080:intron | 30.0% | |
| !!! | GTGGACTTATTTTGAAACTA+TGG | + | tig0029620:21360-21379 | Msa1442080:intron | 30.0% |
| CGACAAACCTATCAAAATAA+GGG | + | tig0029620:21486-21505 | Msa1442080:intron | 30.0% | |
| !!! | TTTATTTTATTTCAGCCCAC+GGG | - | tig0029620:21620-21639 | None:intergenic | 30.0% |
| ! | TTTTACCTGAGCATTAGAAA+GGG | + | tig0029620:21767-21786 | Msa1442080:intron | 30.0% |
| TAATTCTTCCTGAACATCTA+TGG | + | tig0029620:21797-21816 | Msa1442080:intron | 30.0% | |
| ! | AACATCTATGGTGATGTAAT+TGG | + | tig0029620:21809-21828 | Msa1442080:intron | 30.0% |
| ! | ACATCTATGGTGATGTAATT+GGG | + | tig0029620:21810-21829 | Msa1442080:intron | 30.0% |
| ! | CAACAAATTTTCTGAATGCA+AGG | - | tig0029620:21917-21936 | None:intergenic | 30.0% |
| !! | TTGTATATGATAAAGCACTG+TGG | + | tig0029620:22191-22210 | Msa1442080:intron | 30.0% |
| TTGTTAATGTCACGATTGTT+TGG | + | tig0029620:22295-22314 | Msa1442080:intron | 30.0% | |
| TGTTAATGTCACGATTGTTT+GGG | + | tig0029620:22296-22315 | Msa1442080:intron | 30.0% | |
| AATGACCTATAAGGTGATAA+AGG | - | tig0029620:22537-22556 | None:intergenic | 30.0% | |
| !!! | AGGTCATTTTTGTCTTTGAT+TGG | + | tig0029620:22549-22568 | Msa1442080:intron | 30.0% |
| AATAGAGTGGAATTACTGAA+GGG | - | tig0029620:22603-22622 | None:intergenic | 30.0% | |
| ATTATTCGAGTATCATTCAG+AGG | + | tig0029620:22671-22690 | Msa1442080:intron | 30.0% | |
| TTATTCGAGTATCATTCAGA+GGG | + | tig0029620:22672-22691 | Msa1442080:intron | 30.0% | |
| !!! | CTTACTTTGTTTTACACAAG+AGG | - | tig0029620:22769-22788 | None:intergenic | 30.0% |
| CTCTTGTGTAAAACAAAGTA+AGG | + | tig0029620:22767-22786 | Msa1442080:intron | 30.0% | |
| !!! | TTTCTTTTTTGTTTGGGTGT+AGG | + | tig0029620:23039-23058 | Msa1442080:intron | 30.0% |
| !!! | TTCTTTTTTGTTTGGGTGTA+GGG | + | tig0029620:23040-23059 | Msa1442080:intron | 30.0% |
| TAGGGGTCAATAAAAATTCA+TGG | + | tig0029620:23058-23077 | Msa1442080:intron | 30.0% | |
| !! | ATCTATTGTTTGCTATGCAT+TGG | + | tig0029620:23083-23102 | Msa1442080:intron | 30.0% |
| !! | CTTTGTATTTTATGCTGGTT+CGG | + | tig0029620:23239-23258 | Msa1442080:intron | 30.0% |
| TGATAATAGCATGGAAAATG+AGG | - | tig0029620:23370-23389 | None:intergenic | 30.0% | |
| GAGTTTATCTGATAATAGCA+TGG | - | tig0029620:23379-23398 | None:intergenic | 30.0% | |
| TCATTGTTGTGATGATACAA+AGG | + | tig0029620:23471-23490 | Msa1442080:intron | 30.0% | |
| CATTGTTGTGATGATACAAA+GGG | + | tig0029620:23472-23491 | Msa1442080:intron | 30.0% | |
| AAGAGAAATGTGAAATTCCT+TGG | + | tig0029620:23514-23533 | Msa1442080:CDS | 30.0% | |
| AGAGAAATGTGAAATTCCTT+GGG | + | tig0029620:23515-23534 | Msa1442080:CDS | 30.0% | |
| ! | TTGAAGAAGTAATGGTTTTC+GGG | - | tig0029620:23655-23674 | None:intergenic | 30.0% |
| TCAAATATCGTACCATGTTA+AGG | + | tig0029620:23671-23690 | Msa1442080:CDS | 30.0% | |
| AGGAATATGATTCCTTAACA+TGG | - | tig0029620:23686-23705 | None:intergenic | 30.0% | |
| TTGGTCGGATATGTTAATAA+AGG | - | tig0029620:23706-23725 | None:intergenic | 30.0% | |
| !! | TCCTTTTGGAAGAATAAAGA+AGG | + | tig0029620:23836-23855 | Msa1442080:CDS | 30.0% |
| ACCTTCTTTATTCTTCCAAA+AGG | - | tig0029620:23840-23859 | None:intergenic | 30.0% | |
| !! | TGCATTTTTCAAATGCTTTG+AGG | + | tig0029620:23914-23933 | Msa1442080:CDS | 30.0% |
| GTCTATCAATCTAGAAATTG+TGG | + | tig0029620:23975-23994 | Msa1442080:CDS | 30.0% | |
| ATCAATCTAGAAATTGTGGT+TGG | + | tig0029620:23979-23998 | Msa1442080:CDS | 30.0% | |
| TCAATCTAGAAATTGTGGTT+GGG | + | tig0029620:23980-23999 | Msa1442080:CDS | 30.0% | |
| ATTTAGTGACCAAGGAAATA+AGG | + | tig0029620:24216-24235 | Msa1442080:CDS | 30.0% | |
| TATAGTCGATAAAAGACTGA+TGG | - | tig0029620:24396-24415 | None:intergenic | 30.0% | |
| TATATGCAATGCGTATTCAT+GGG | + | tig0029620:24412-24431 | Msa1442080:CDS | 30.0% | |
| ! | ATTGCACACTATGCTATTTA+TGG | + | tig0029620:24561-24580 | Msa1442080:three_prime_UTR | 30.0% |
| ! | TTGCACACTATGCTATTTAT+GGG | + | tig0029620:24562-24581 | Msa1442080:three_prime_UTR | 30.0% |
| !!! | TTGGTTTTGAAGGCTGATTT+GGG | - | tig0029620:18985-19004 | None:intergenic | 35.0% |
| !!! | ATTGGTTTTGAAGGCTGATT+TGG | - | tig0029620:18986-19005 | None:intergenic | 35.0% |
| !!! | TACCAATGGATTGGTTTTGA+AGG | - | tig0029620:18995-19014 | None:intergenic | 35.0% |
| TTTAATACCTTAAGATGCGC+CGG | - | tig0029620:19135-19154 | None:intergenic | 35.0% | |
| ! | TTCCAGCCCTCAAATATTTT+AGG | - | tig0029620:19206-19225 | None:intergenic | 35.0% |
| GCTGGAAGAATTGATATAAG+AGG | + | tig0029620:19219-19238 | Msa1442080:CDS | 35.0% | |
| TGACTACTATGGCAAAAACA+AGG | - | tig0029620:19535-19554 | None:intergenic | 35.0% | |
| ! | TATCCCGCTATAGCATTTTT+GGG | + | tig0029620:20057-20076 | Msa1442080:intron | 35.0% |
| !! | TAGTAGTTAATAGCGGATAG+CGG | - | tig0029620:20098-20117 | None:intergenic | 35.0% |
| CTATCCGCTATTAACTACTA+TGG | + | tig0029620:20098-20117 | Msa1442080:intron | 35.0% | |
| ! | CTTTGTAATGCCATGACTTT+TGG | + | tig0029620:20226-20245 | Msa1442080:intron | 35.0% |
| CTTTGTTGGATTCAGACAAA+TGG | + | tig0029620:20278-20297 | Msa1442080:intron | 35.0% | |
| ACAAAGATATAGACTCCATC+AGG | - | tig0029620:20436-20455 | None:intergenic | 35.0% | |
| ATCAATTTCCCGCAAACATA+AGG | - | tig0029620:20489-20508 | None:intergenic | 35.0% | |
| AGCACCTATAGTAAGAAAGA+TGG | + | tig0029620:20640-20659 | Msa1442080:intron | 35.0% | |
| GCTACCATCTTTCTTACTAT+AGG | - | tig0029620:20647-20666 | None:intergenic | 35.0% | |
| !!! | CATTCCATGGTACTTTTTCA+TGG | - | tig0029620:20942-20961 | None:intergenic | 35.0% |
| !!! | GTAGGGAGTGACAAATTTTT+TGG | - | tig0029620:20991-21010 | None:intergenic | 35.0% |
| GTATGGAGTGATTAAGGTTA+AGG | - | tig0029620:21030-21049 | None:intergenic | 35.0% | |
| GATAGATAAACGGCATAAGA+GGG | - | tig0029620:21106-21125 | None:intergenic | 35.0% | |
| AGATAGATAAACGGCATAAG+AGG | - | tig0029620:21107-21126 | None:intergenic | 35.0% | |
| ! | TTCTAGAAAGAGATTGCAAG+TGG | - | tig0029620:21136-21155 | None:intergenic | 35.0% |
| TAAATATTGGTGTGGATGCT+AGG | - | tig0029620:21176-21195 | None:intergenic | 35.0% | |
| GTTTCAAAATAAGTCCACCA+AGG | - | tig0029620:21358-21377 | None:intergenic | 35.0% | |
| AGCGACAAACTTGTGAAAAT+AGG | + | tig0029620:21455-21474 | Msa1442080:intron | 35.0% | |
| GCGACAAACTTGTGAAAATA+GGG | + | tig0029620:21456-21475 | Msa1442080:intron | 35.0% | |
| GCGACAAACCTATCAAAATA+AGG | + | tig0029620:21485-21504 | Msa1442080:intron | 35.0% | |
| ACCTATCAAAATAAGGGTTC+CGG | + | tig0029620:21492-21511 | Msa1442080:intron | 35.0% | |
| ! | AGATTTTCTCTCAATTCTGG+TGG | - | tig0029620:21521-21540 | None:intergenic | 35.0% |
| ! | TCGAGATTTTCTCTCAATTC+TGG | - | tig0029620:21524-21543 | None:intergenic | 35.0% |
| !! | GAATCAAAAAGTGTCCTCTT+AGG | + | tig0029620:21555-21574 | Msa1442080:intron | 35.0% |
| TGAAAGAAATAACAAACCCG+TGG | + | tig0029620:21601-21620 | Msa1442080:intron | 35.0% | |
| GAAAGAAATAACAAACCCGT+GGG | + | tig0029620:21602-21621 | Msa1442080:intron | 35.0% | |
| TCTTAGTAACTGATGTAGGA+GGG | - | tig0029620:21718-21737 | None:intergenic | 35.0% | |
| TTCTTAGTAACTGATGTAGG+AGG | - | tig0029620:21719-21738 | None:intergenic | 35.0% | |
| GGTTTCTTAGTAACTGATGT+AGG | - | tig0029620:21722-21741 | None:intergenic | 35.0% | |
| ! | GTTTTACCTGAGCATTAGAA+AGG | + | tig0029620:21766-21785 | Msa1442080:intron | 35.0% |
| TTACATCACCATAGATGTTC+AGG | - | tig0029620:21808-21827 | None:intergenic | 35.0% | |
| ! | CATCTATGGTGATGTAATTG+GGG | + | tig0029620:21811-21830 | Msa1442080:intron | 35.0% |
| TAAGATGATGACAAGGGTTT+AGG | - | tig0029620:21848-21867 | None:intergenic | 35.0% | |
| TGTTAACTGTACACACTATC+TGG | + | tig0029620:21879-21898 | Msa1442080:intron | 35.0% | |
| GTTAACTGTACACACTATCT+GGG | + | tig0029620:21880-21899 | Msa1442080:intron | 35.0% | |
| GATAAGACTATAGAGAGAGT+TGG | + | tig0029620:21998-22017 | Msa1442080:intron | 35.0% | |
| TGGGATTGGAAAAAAACACA+AGG | + | tig0029620:22315-22334 | Msa1442080:intron | 35.0% | |
| GTACTCAGATAAACATCTCT+TGG | + | tig0029620:22417-22436 | Msa1442080:intron | 35.0% | |
| AACATCTCTTGGATTGATAG+TGG | + | tig0029620:22428-22447 | Msa1442080:intron | 35.0% | |
| !! | AGAGCTTTGGAATACAATGA+AGG | + | tig0029620:22460-22479 | Msa1442080:intron | 35.0% |
| !! | GAGCTTTGGAATACAATGAA+GGG | + | tig0029620:22461-22480 | Msa1442080:intron | 35.0% |
| CAATAGAGTGGAATTACTGA+AGG | - | tig0029620:22604-22623 | None:intergenic | 35.0% | |
| TATTCGAGTATCATTCAGAG+GGG | + | tig0029620:22673-22692 | Msa1442080:intron | 35.0% | |
| ! | TGTTTTTCTCACATGACTGT+AGG | + | tig0029620:22949-22968 | Msa1442080:intron | 35.0% |
| ! | GTTTTTCTCACATGACTGTA+GGG | + | tig0029620:22950-22969 | Msa1442080:intron | 35.0% |
| ! | TTTTTCTCACATGACTGTAG+GGG | + | tig0029620:22951-22970 | Msa1442080:intron | 35.0% |
| !!! | TCTTTTTTGTTTGGGTGTAG+GGG | + | tig0029620:23041-23060 | Msa1442080:intron | 35.0% |
| TGGTCCATGATCACAAAAAT+AGG | + | tig0029620:23108-23127 | Msa1442080:intron | 35.0% | |
| !! | ATTTTTGTTTGGGGAAACTG+TGG | + | tig0029620:23200-23219 | Msa1442080:intron | 35.0% |
| !! | ATTTTTGTTTGGGGAAACTG+TGG | + | tig0029620:23200-23219 | Msa1442080:intron | 35.0% |
| !!! | TGCTGGTTCGAATTTTTGTT+TGG | + | tig0029620:23313-23332 | Msa1442080:intron | 35.0% |
| !!! | GCTGGTTCGAATTTTTGTTT+GGG | + | tig0029620:23314-23333 | Msa1442080:intron | 35.0% |
| !! | CTGGTTCGAATTTTTGTTTG+GGG | + | tig0029620:23315-23334 | Msa1442080:intron | 35.0% |
| !! | ATTTTTGTTTGGGGAAACTG+TGG | + | tig0029620:23200-23219 | Msa1442080:intron | 35.0% |
| ATCACAACAATGACAGTGTT+AGG | - | tig0029620:23464-23483 | None:intergenic | 35.0% | |
| AAAGGGAAAAAGCTGAAGAA+GGG | + | tig0029620:23489-23508 | Msa1442080:intron | 35.0% | |
| ! | GTCGTCAAAATCTAGTGTTT+TGG | - | tig0029620:23559-23578 | None:intergenic | 35.0% |
| AAGATGTAACGTAGGTAGAA+CGG | - | tig0029620:23764-23783 | None:intergenic | 35.0% | |
| TAAAGAGCAGCTAACTTCAA+AGG | - | tig0029620:23877-23896 | None:intergenic | 35.0% | |
| GCATTTGAAAAATGCAAGCA+AGG | - | tig0029620:23910-23929 | None:intergenic | 35.0% | |
| !! | ATGCTTTGAGGAATTTGTCT+TGG | + | tig0029620:23926-23945 | Msa1442080:CDS | 35.0% |
| TTGGGTTACTTATTCGACAA+TGG | + | tig0029620:23998-24017 | Msa1442080:CDS | 35.0% | |
| AATGGAAAATCCAGAAGAGT+GGG | + | tig0029620:24016-24035 | Msa1442080:CDS | 35.0% | |
| TTACTAACAAGGCCAACATA+GGG | + | tig0029620:24078-24097 | Msa1442080:CDS | 35.0% | |
| TATTTGCAGAATTCAAGCTG+AGG | - | tig0029620:24106-24125 | None:intergenic | 35.0% | |
| TACAGGGAAGATGTTACATT+GGG | - | tig0029620:24155-24174 | None:intergenic | 35.0% | |
| ATTAACCAACCTAAGGTACA+GGG | - | tig0029620:24171-24190 | None:intergenic | 35.0% | |
| AATTAACCAACCTAAGGTAC+AGG | - | tig0029620:24172-24191 | None:intergenic | 35.0% | |
| CATCACAATTAACCAACCTA+AGG | - | tig0029620:24178-24197 | None:intergenic | 35.0% | |
| ! | TTGTGATGAGCAACTTTTAG+TGG | + | tig0029620:24190-24209 | Msa1442080:CDS | 35.0% |
| ! | GTACACATTCCTTATTTCCT+TGG | - | tig0029620:24228-24247 | None:intergenic | 35.0% |
| CTATATGCAATGCGTATTCA+TGG | + | tig0029620:24411-24430 | Msa1442080:CDS | 35.0% | |
| ! | GATGCACAGGCATATTTTAT+AGG | + | tig0029620:24695-24714 | Msa1442080:three_prime_UTR | 35.0% |
| AGCCTTCAAAACCAATCCAT+TGG | + | tig0029620:18990-19009 | Msa1442080:five_prime_UTR | 40.0% | |
| CTCCTAAAATATTTGAGGGC+TGG | + | tig0029620:19201-19220 | Msa1442080:CDS | 40.0% | |
| ACAGTGAAAGAGCTGCTTAA+AGG | + | tig0029620:19252-19271 | Msa1442080:CDS | 40.0% | |
| CAGTGAAAGAGCTGCTTAAA+GGG | + | tig0029620:19253-19272 | Msa1442080:CDS | 40.0% | |
| !! | AGGGCATGCGGATTTAATTT+TGG | + | tig0029620:19272-19291 | Msa1442080:CDS | 40.0% |
| !! | GGGCATGCGGATTTAATTTT+GGG | + | tig0029620:19273-19292 | Msa1442080:CDS | 40.0% |
| GCAATGGAAAAACAACGAAC+CGG | - | tig0029620:19319-19338 | None:intergenic | 40.0% | |
| ! | TTGGCCGTTATTGACTACTA+TGG | - | tig0029620:19546-19565 | None:intergenic | 40.0% |
| AAGCAAACGCGACAAAGTAA+AGG | - | tig0029620:19801-19820 | None:intergenic | 40.0% | |
| ! | CTATCCCGCTATAGCATTTT+TGG | + | tig0029620:20056-20075 | Msa1442080:intron | 40.0% |
| ! | ATCCCGCTATAGCATTTTTG+GGG | + | tig0029620:20058-20077 | Msa1442080:intron | 40.0% |
| ! | CGTTGTAATGCCATGACTTT+TGG | + | tig0029620:20132-20151 | Msa1442080:intron | 40.0% |
| CGACAACAAACCAAAAGTCA+TGG | - | tig0029620:20239-20258 | None:intergenic | 40.0% | |
| TTGCGGGAAATTGATGTTCA+CGG | + | tig0029620:20494-20513 | Msa1442080:intron | 40.0% | |
| TCATGCATTAGAGAGAGAGT+TGG | + | tig0029620:20606-20625 | Msa1442080:intron | 40.0% | |
| CATGCATTAGAGAGAGAGTT+GGG | + | tig0029620:20607-20626 | Msa1442080:intron | 40.0% | |
| AGATGGTAGCAAATAGGCTT+AGG | + | tig0029620:20657-20676 | Msa1442080:intron | 40.0% | |
| ! | AAATGTGGTTGGTCATTCCA+TGG | - | tig0029620:20955-20974 | None:intergenic | 40.0% |
| !! | TGTGGTGCTATAAATGTGGT+TGG | - | tig0029620:20966-20985 | None:intergenic | 40.0% |
| !! | GGTATGTGGTGCTATAAATG+TGG | - | tig0029620:20970-20989 | None:intergenic | 40.0% |
| TTAAGGAAACGAGAGTAGTG+AGG | - | tig0029620:21013-21032 | None:intergenic | 40.0% | |
| GAATGGGTATGGAGTGATTA+AGG | - | tig0029620:21036-21055 | None:intergenic | 40.0% | |
| GAATCCAAACAGAATGGGTA+TGG | - | tig0029620:21047-21066 | None:intergenic | 40.0% | |
| TAAGGTTTAGAGAGGTGACA+TGG | + | tig0029620:21317-21336 | Msa1442080:intron | 40.0% | |
| ! | GGTTCCATATCTTTTGTCCT+TGG | + | tig0029620:21338-21357 | Msa1442080:intron | 40.0% |
| ! | TCCATATCTTTTGTCCTTGG+TGG | + | tig0029620:21341-21360 | Msa1442080:intron | 40.0% |
| TCCACCAAGGACAAAAGATA+TGG | - | tig0029620:21345-21364 | None:intergenic | 40.0% | |
| !!! | TCCGGAACCCTTATTTTGAT+AGG | - | tig0029620:21496-21515 | None:intergenic | 40.0% |
| CAGAACTTATGTAGCCTAAG+AGG | - | tig0029620:21572-21591 | None:intergenic | 40.0% | |
| TAGCACTTACGGTAGAAACT+AGG | + | tig0029620:22023-22042 | Msa1442080:intron | 40.0% | |
| TTACGGTAGAAACTAGGCTT+AGG | + | tig0029620:22029-22048 | Msa1442080:intron | 40.0% | |
| AAACTAGGCTTAGGTGGTTT+GGG | + | tig0029620:22038-22057 | Msa1442080:intron | 40.0% | |
| AGTAAGGAGAGTGGATCAAA+TGG | + | tig0029620:22090-22109 | Msa1442080:intron | 40.0% | |
| ! | ATGTCACGATTGTTTGGGAT+TGG | + | tig0029620:22301-22320 | Msa1442080:intron | 40.0% |
| ! | GTGGTATAGATCTAGAGCTT+TGG | + | tig0029620:22447-22466 | Msa1442080:intron | 40.0% |
| GTTGTTGTCATGTGACTGAA+AGG | + | tig0029620:22718-22737 | Msa1442080:intron | 40.0% | |
| ! | TTACACAAGAGGTTGTTTCC+AGG | - | tig0029620:22758-22777 | None:intergenic | 40.0% |
| CGTACAATACACCAAATGGT+GGG | + | tig0029620:22793-22812 | Msa1442080:intron | 40.0% | |
| CGAATAAAAAAAGGGCAACC+CGG | - | tig0029620:22859-22878 | None:intergenic | 40.0% | |
| TAGGAAAAGGTCAAGCAGTA+AGG | - | tig0029620:22998-23017 | None:intergenic | 40.0% | |
| !! | TTGTTTGCTATGCATTGGCA+TGG | + | tig0029620:23088-23107 | Msa1442080:intron | 40.0% |
| !!! | TGCTGGTTCGGATTTTTGTT+TGG | + | tig0029620:23189-23208 | Msa1442080:intron | 40.0% |
| !!! | GCTGGTTCGGATTTTTGTTT+GGG | + | tig0029620:23190-23209 | Msa1442080:intron | 40.0% |
| !!! | CTGGTTCGGATTTTTGTTTG+GGG | + | tig0029620:23191-23210 | Msa1442080:intron | 40.0% |
| !!! | TGCTGGTTCGGATTTTTGTT+TGG | + | tig0029620:23189-23208 | Msa1442080:intron | 40.0% |
| !!! | GCTGGTTCGGATTTTTGTTT+GGG | + | tig0029620:23190-23209 | Msa1442080:intron | 40.0% |
| !!! | CTGGTTCGGATTTTTGTTTG+GGG | + | tig0029620:23191-23210 | Msa1442080:intron | 40.0% |
| CAAAGGGAAAAAGCTGAAGA+AGG | + | tig0029620:23488-23507 | Msa1442080:intron | 40.0% | |
| ATGATGTTAAGCACATCCCA+AGG | - | tig0029620:23534-23553 | None:intergenic | 40.0% | |
| TGACGACCTGTTTCAATTTG+CGG | + | tig0029620:23572-23591 | Msa1442080:CDS | 40.0% | |
| ATGAAAAGCCCTCCAATTCT+TGG | - | tig0029620:23604-23623 | None:intergenic | 40.0% | |
| CAAGTGACAAACTTCTTGGT+CGG | - | tig0029620:23721-23740 | None:intergenic | 40.0% | |
| TCTCCAAGTGACAAACTTCT+TGG | - | tig0029620:23725-23744 | None:intergenic | 40.0% | |
| AGATGTAACGTAGGTAGAAC+GGG | - | tig0029620:23763-23782 | None:intergenic | 40.0% | |
| TCTGCTAGAAGATGTAACGT+AGG | - | tig0029620:23772-23791 | None:intergenic | 40.0% | |
| TGAAAAATGCAAGCAAGGCA+CGG | - | tig0029620:23905-23924 | None:intergenic | 40.0% | |
| ! | CTTTGAGGAATTTGTCTTGG+TGG | + | tig0029620:23929-23948 | Msa1442080:CDS | 40.0% |
| CAATGGAAAATCCAGAAGAG+TGG | + | tig0029620:24015-24034 | Msa1442080:CDS | 40.0% | |
| GTTACTAACAAGGCCAACAT+AGG | + | tig0029620:24077-24096 | Msa1442080:CDS | 40.0% | |
| TACTAACAAGGCCAACATAG+GGG | + | tig0029620:24079-24098 | Msa1442080:CDS | 40.0% | |
| GTACAGGGAAGATGTTACAT+TGG | - | tig0029620:24156-24175 | None:intergenic | 40.0% | |
| TAACATCTTCCCTGTACCTT+AGG | + | tig0029620:24159-24178 | Msa1442080:CDS | 40.0% | |
| ! | AGTGGTTGATTTAGTGACCA+AGG | + | tig0029620:24208-24227 | Msa1442080:CDS | 40.0% |
| TCTCATATCCCAACATGTTC+GGG | - | tig0029620:24358-24377 | None:intergenic | 40.0% | |
| CTCTCATATCCCAACATGTT+CGG | - | tig0029620:24359-24378 | None:intergenic | 40.0% | |
| TTCCAGCTCCTAAAGAAACA+AGG | + | tig0029620:24465-24484 | Msa1442080:CDS | 40.0% | |
| TCCAGCTCCTAAAGAAACAA+GGG | + | tig0029620:24466-24485 | Msa1442080:CDS | 40.0% | |
| ! | ATCAAGCCCCTTGTTTCTTT+AGG | - | tig0029620:24476-24495 | None:intergenic | 40.0% |
| TAAAGAAACAAGGGGCTTGA+TGG | + | tig0029620:24475-24494 | Msa1442080:CDS | 40.0% | |
| ! | TCTGGACCCTAATTCTGAAG+CGG | - | tig0029620:18928-18947 | None:intergenic | 45.0% |
| ! | TGATTTGGGTAATTGAGCGG+CGG | - | tig0029620:18971-18990 | None:intergenic | 45.0% |
| !! | GGCTGATTTGGGTAATTGAG+CGG | - | tig0029620:18974-18993 | None:intergenic | 45.0% |
| TGATTCGAGGTGCATACCAA+TGG | - | tig0029620:19009-19028 | None:intergenic | 45.0% | |
| CAGCTCTTTCACTGTTGCTA+CGG | - | tig0029620:19247-19266 | None:intergenic | 45.0% | |
| TGGAAAAACAACGAACCGGT+TGG | - | tig0029620:19315-19334 | None:intergenic | 45.0% | |
| TGTTCCCACTTTCGAGCAAT+GGG | - | tig0029620:19449-19468 | None:intergenic | 45.0% | |
| ATGTTCCCACTTTCGAGCAA+TGG | - | tig0029620:19450-19469 | None:intergenic | 45.0% | |
| ACAGAACAGCAGAAAAGCAG+AGG | - | tig0029620:19749-19768 | None:intergenic | 45.0% | |
| AGAGAGAGCAGAATGGAGTT+TGG | - | tig0029620:19912-19931 | None:intergenic | 45.0% | |
| CAGAAACAGAGAGAGCAGAA+TGG | - | tig0029620:19919-19938 | None:intergenic | 45.0% | |
| GACCCCAAAAATGCTATAGC+GGG | - | tig0029620:20063-20082 | None:intergenic | 45.0% | |
| CGACCCCAAAAATGCTATAG+CGG | - | tig0029620:20064-20083 | None:intergenic | 45.0% | |
| !!! | CGCTATAGCATTTTTGGGGT+CGG | + | tig0029620:20062-20081 | Msa1442080:intron | 45.0% |
| CGACGACAAACCAAAAGTCA+TGG | - | tig0029620:20145-20164 | None:intergenic | 45.0% | |
| GTTAGGGGTCCTTATGTTTG+CGG | + | tig0029620:20477-20496 | Msa1442080:intron | 45.0% | |
| TTAGGGGTCCTTATGTTTGC+GGG | + | tig0029620:20478-20497 | Msa1442080:intron | 45.0% | |
| TGCGGGAAATTGATGTTCAC+GGG | + | tig0029620:20495-20514 | Msa1442080:intron | 45.0% | |
| ! | TACTATAGGTGCTACCCCAA+CGG | - | tig0029620:20633-20652 | None:intergenic | 45.0% |
| TGGTAGCAAATAGGCTTAGG+TGG | + | tig0029620:20660-20679 | Msa1442080:intron | 45.0% | |
| ATGTAGCCTACCCACTTAGT+GGG | + | tig0029620:20878-20897 | Msa1442080:intron | 45.0% | |
| GAAACGAGAGTAGTGAGGTA+GGG | - | tig0029620:21008-21027 | None:intergenic | 45.0% | |
| CACTCCATACCCATTCTGTT+TGG | + | tig0029620:21040-21059 | Msa1442080:intron | 45.0% | |
| ! | AAGAGGGAAGTATGCTGAGT+TGG | - | tig0029620:21090-21109 | None:intergenic | 45.0% |
| TGGCACGGGAGATAGATAAA+CGG | - | tig0029620:21116-21135 | None:intergenic | 45.0% | |
| AAAGAGATTGCAAGTGGCAC+GGG | - | tig0029620:21130-21149 | None:intergenic | 45.0% | |
| GAAAGAGATTGCAAGTGGCA+CGG | - | tig0029620:21131-21150 | None:intergenic | 45.0% | |
| GAAGAAGGAAAACACGTGTG+AGG | - | tig0029620:21219-21238 | None:intergenic | 45.0% | |
| !! | CTCTCAATTCTGGTGGATTC+CGG | - | tig0029620:21514-21533 | None:intergenic | 45.0% |
| AGACAGACAGTGATGTAGGA+GGG | - | tig0029620:21743-21762 | None:intergenic | 45.0% | |
| CAACAGACAGACAGTGATGT+AGG | - | tig0029620:21747-21766 | None:intergenic | 45.0% | |
| TACCTGAGCATTAGAAAGGG+TGG | + | tig0029620:21770-21789 | Msa1442080:intron | 45.0% | |
| ATCCACCCTTTCTAATGCTC+AGG | - | tig0029620:21775-21794 | None:intergenic | 45.0% | |
| CTGAATGCAAGGGTGAATAG+AGG | - | tig0029620:21906-21925 | None:intergenic | 45.0% | |
| !! | GAGAGTTGGTGTAGCACTTA+CGG | + | tig0029620:22012-22031 | Msa1442080:intron | 45.0% |
| GAAACTAGGCTTAGGTGGTT+TGG | + | tig0029620:22037-22056 | Msa1442080:intron | 45.0% | |
| GCATGTAGAGAGAAGACTTG+TGG | + | tig0029620:22060-22079 | Msa1442080:intron | 45.0% | |
| AGAGAGAAGACTTGTGGATC+CGG | + | tig0029620:22066-22085 | Msa1442080:intron | 45.0% | |
| TGATCCACTCTCCTTACTAC+CGG | - | tig0029620:22088-22107 | None:intergenic | 45.0% | |
| AAGGAGAGTGGATCAAATGG+AGG | + | tig0029620:22093-22112 | Msa1442080:intron | 45.0% | |
| AGGAGAGTGGATCAAATGGA+GGG | + | tig0029620:22094-22113 | Msa1442080:intron | 45.0% | |
| GAGGGTAGTCAAATCACTAG+AGG | + | tig0029620:22112-22131 | Msa1442080:intron | 45.0% | |
| AGTCAAATCACTAGAGGCAG+AGG | + | tig0029620:22118-22137 | Msa1442080:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | tig0029620:22238-22257 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | tig0029620:22239-22258 | None:intergenic | 45.0% |
| ATCATTCAGAGGGGTAACCT+TGG | + | tig0029620:22682-22701 | Msa1442080:intron | 45.0% | |
| CAACTTTACCAATTGCGCCA+AGG | - | tig0029620:22702-22721 | None:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | + | tig0029620:22724-22743 | Msa1442080:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | + | tig0029620:22725-22744 | Msa1442080:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | tig0029620:22789-22808 | Msa1442080:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | tig0029620:22792-22811 | Msa1442080:intron | 45.0% | |
| ATGACTGTAGGGGAAATGCA+TGG | + | tig0029620:22961-22980 | Msa1442080:intron | 45.0% | |
| GACGACCTGTTTCAATTTGC+GGG | + | tig0029620:23573-23592 | Msa1442080:CDS | 45.0% | |
| ACACTCCCGCAAATTGAAAC+AGG | - | tig0029620:23581-23600 | None:intergenic | 45.0% | |
| CGACCAAGAAGTTTGTCACT+TGG | + | tig0029620:23719-23738 | Msa1442080:CDS | 45.0% | |
| ATGTAACGTAGGTAGAACGG+GGG | - | tig0029620:23761-23780 | None:intergenic | 45.0% | |
| GATGTAACGTAGGTAGAACG+GGG | - | tig0029620:23762-23781 | None:intergenic | 45.0% | |
| GAGCAGCTAACTTCAAAGGT+AGG | - | tig0029620:23873-23892 | None:intergenic | 45.0% | |
| AAGTCAACAACCCACTCTTC+TGG | - | tig0029620:24029-24048 | None:intergenic | 45.0% | |
| !! | AGAGTGGGTTGTTGACTTTG+TGG | + | tig0029620:24031-24050 | Msa1442080:CDS | 45.0% |
| ATCTTCCCTGTACCTTAGGT+TGG | + | tig0029620:24163-24182 | Msa1442080:CDS | 45.0% | |
| ATTGAGCAACCCGAACATGT+TGG | + | tig0029620:24346-24365 | Msa1442080:CDS | 45.0% | |
| TTGAGCAACCCGAACATGTT+GGG | + | tig0029620:24347-24366 | Msa1442080:CDS | 45.0% | |
| CCAGCTCCTAAAGAAACAAG+GGG | + | tig0029620:24467-24486 | Msa1442080:CDS | 45.0% | |
| ! | ATCCCTGCCGCTTCAGAATT+AGG | + | tig0029620:18918-18937 | Msa1442080:five_prime_UTR | 50.0% |
| ! | TCCCTGCCGCTTCAGAATTA+GGG | + | tig0029620:18919-18938 | Msa1442080:five_prime_UTR | 50.0% |
| !! | ACCCTAATTCTGAAGCGGCA+GGG | - | tig0029620:18923-18942 | None:intergenic | 50.0% |
| !! | GCAGGGATTAAGAGTGTCTC+TGG | - | tig0029620:18946-18965 | None:intergenic | 50.0% |
| CGAGGTGCATACCAATGGAT+TGG | - | tig0029620:19004-19023 | None:intergenic | 50.0% | |
| GTGCATCATCGCTGTATTGG+GGG | - | tig0029620:19113-19132 | None:intergenic | 50.0% | |
| GGTGCATCATCGCTGTATTG+GGG | - | tig0029620:19114-19133 | None:intergenic | 50.0% | |
| CGGTGCATCATCGCTGTATT+GGG | - | tig0029620:19115-19134 | None:intergenic | 50.0% | |
| CCAATACAGCGATGATGCAC+CGG | + | tig0029620:19113-19132 | Msa1442080:CDS | 50.0% | |
| ! | AGAGCTGCTTAAAGGGCATG+CGG | + | tig0029620:19260-19279 | Msa1442080:CDS | 50.0% |
| TTCAACACCTCCATGCCAAC+CGG | + | tig0029620:19297-19316 | Msa1442080:CDS | 50.0% | |
| AAACAACGAACCGGTTGGCA+TGG | - | tig0029620:19310-19329 | None:intergenic | 50.0% | |
| AGCTCCCATTGCTCGAAAGT+GGG | + | tig0029620:19442-19461 | Msa1442080:intron | 50.0% | |
| TATCTCACACCGCAACGCTA+TGG | - | tig0029620:19621-19640 | None:intergenic | 50.0% | |
| ATAGCGTTGCGGTGTGAGAT+AGG | + | tig0029620:19620-19639 | Msa1442080:intron | 50.0% | |
| TAGCGTTGCGGTGTGAGATA+GGG | + | tig0029620:19621-19640 | Msa1442080:intron | 50.0% | |
| AAAGGAGAGTCAGCTCAGAG+AGG | + | tig0029620:20741-20760 | Msa1442080:intron | 50.0% | |
| CACTAAGTGGGTAGGCTACA+TGG | - | tig0029620:20879-20898 | None:intergenic | 50.0% | |
| CATGTAGCCTACCCACTTAG+TGG | + | tig0029620:20877-20896 | Msa1442080:intron | 50.0% | |
| CAAGCCTCATCCCACTAAGT+GGG | - | tig0029620:20891-20910 | None:intergenic | 50.0% | |
| TCAAGCCTCATCCCACTAAG+TGG | - | tig0029620:20892-20911 | None:intergenic | 50.0% | |
| GGAAACGAGAGTAGTGAGGT+AGG | - | tig0029620:21009-21028 | None:intergenic | 50.0% | |
| ACGTGTGAGGTGAGAACAAG+TGG | - | tig0029620:21206-21225 | None:intergenic | 50.0% | |
| CAGACAGACAGTGATGTAGG+AGG | - | tig0029620:21744-21763 | None:intergenic | 50.0% | |
| CGGTAGAAACTAGGCTTAGG+TGG | + | tig0029620:22032-22051 | Msa1442080:intron | 50.0% | |
| GACTTGTGGATCCGGTAGTA+AGG | + | tig0029620:22074-22093 | Msa1442080:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+TGG | - | tig0029620:22234-22253 | None:intergenic | 50.0% | |
| CAACCCCACTTAGTGGGATA+AGG | + | tig0029620:22232-22251 | Msa1442080:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | tig0029620:22240-22259 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | tig0029620:22237-22256 | Msa1442080:intron | 50.0% | |
| CTAGAGCTCCCACATATGCA+GGG | - | tig0029620:22832-22851 | None:intergenic | 50.0% | |
| ACTAGAGCTCCCACATATGC+AGG | - | tig0029620:22833-22852 | None:intergenic | 50.0% | |
| !! | TTGCGGGAGTGTCCAAGAAT+TGG | + | tig0029620:23589-23608 | Msa1442080:CDS | 50.0% |
| !! | GGGAGTGTCCAAGAATTGGA+GGG | + | tig0029620:23593-23612 | Msa1442080:CDS | 50.0% |
| ! | CCCCTTGTTTCTTTAGGAGC+TGG | - | tig0029620:24470-24489 | None:intergenic | 50.0% |
| CATCTACTTGTGCGATGCAC+AGG | + | tig0029620:24682-24701 | Msa1442080:three_prime_UTR | 50.0% | |
| !! | GACCCTAATTCTGAAGCGGC+AGG | - | tig0029620:18924-18943 | None:intergenic | 55.0% |
| TTTGGGTAATTGAGCGGCGG+CGG | - | tig0029620:18968-18987 | None:intergenic | 55.0% | |
| CCGGTGCATCATCGCTGTAT+TGG | - | tig0029620:19116-19135 | None:intergenic | 55.0% | |
| ! | TGATGCACCGGCGCATCTTA+AGG | + | tig0029620:19125-19144 | Msa1442080:CDS | 55.0% |
| GAGCTCCCATTGCTCGAAAG+TGG | + | tig0029620:19441-19460 | Msa1442080:intron | 55.0% | |
| !! | TGGCTTGTTGCGTAGCACTC+CGG | - | tig0029620:19601-19620 | None:intergenic | 55.0% |
| CGCAACAAGCCATAGCGTTG+CGG | + | tig0029620:19609-19628 | Msa1442080:intron | 55.0% | |
| AGCGTTGCGGTGTGAGATAG+GGG | + | tig0029620:19622-19641 | Msa1442080:intron | 55.0% | |
| TAGAGAGAGAGTTGGGCCGT+TGG | + | tig0029620:20614-20633 | Msa1442080:intron | 55.0% | |
| AGAGAGAGAGTTGGGCCGTT+GGG | + | tig0029620:20615-20634 | Msa1442080:intron | 55.0% | |
| TCAGCTCAGAGAGGAGGTAG+AGG | + | tig0029620:20750-20769 | Msa1442080:intron | 55.0% | |
| CCTCATCCCACTAAGTGGGT+AGG | - | tig0029620:20887-20906 | None:intergenic | 55.0% | |
| CCTACCCACTTAGTGGGATG+AGG | + | tig0029620:20884-20903 | Msa1442080:intron | 55.0% | |
| GGTGTCTGTCTGACGCAGTA+CGG | + | tig0029620:21381-21400 | Msa1442080:intron | 55.0% | |
| ! | TGACGCAGTACGGAAGCGTA+GGG | + | tig0029620:21391-21410 | Msa1442080:intron | 55.0% |
| GGATCCGGTAGTAAGGAGAG+TGG | + | tig0029620:22081-22100 | Msa1442080:intron | 55.0% | |
| ATGCAGCCAACCCCACTTAG+TGG | + | tig0029620:22225-22244 | Msa1442080:intron | 55.0% | |
| TGCAGCCAACCCCACTTAGT+GGG | + | tig0029620:22226-22245 | Msa1442080:intron | 55.0% | |
| AGGGGTAACCTTGGCGCAAT+TGG | + | tig0029620:22691-22710 | Msa1442080:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | tig0029620:22737-22756 | Msa1442080:intron | 55.0% | |
| ! | CAAATGGTGGGACCCTTTCC+CGG | + | tig0029620:22805-22824 | Msa1442080:intron | 55.0% |
| CATATGCAGGGTCCGGGAAA+GGG | - | tig0029620:22820-22839 | None:intergenic | 55.0% | |
| ACATATGCAGGGTCCGGGAA+AGG | - | tig0029620:22821-22840 | None:intergenic | 55.0% | |
| TTTCCCGGACCCTGCATATG+TGG | + | tig0029620:22820-22839 | Msa1442080:intron | 55.0% | |
| TTCCCGGACCCTGCATATGT+GGG | + | tig0029620:22821-22840 | Msa1442080:intron | 55.0% | |
| ! | ATGTGGGAGCTCTAGTGCAC+CGG | + | tig0029620:22837-22856 | Msa1442080:intron | 55.0% |
| !! | CGGGAGTGTCCAAGAATTGG+AGG | + | tig0029620:23592-23611 | Msa1442080:CDS | 55.0% |
| CAAGCTGAGGACCCCTATGT+TGG | - | tig0029620:24093-24112 | None:intergenic | 55.0% | |
| ! | CAAGGGGCTTGATGGTCGAT+TGG | + | tig0029620:24483-24502 | Msa1442080:CDS | 55.0% |
| CAACGAACCGGTTGGCATGG+AGG | - | tig0029620:19307-19326 | None:intergenic | 60.0% | |
| !! | GGGCGCTATAGCGGTGCTAT+TGG | - | tig0029620:19565-19584 | None:intergenic | 60.0% |
| AGGGGAGCAACGCTTCGTAG+CGG | + | tig0029620:19640-19659 | Msa1442080:intron | 60.0% | |
| GAGAGAGAGTTGGGCCGTTG+GGG | + | tig0029620:20616-20635 | Msa1442080:intron | 60.0% | |
| GGAGAGTCAGCTCAGAGAGG+AGG | + | tig0029620:20744-20763 | Msa1442080:intron | 60.0% | |
| ! | CTGACGCAGTACGGAAGCGT+AGG | + | tig0029620:21390-21409 | Msa1442080:intron | 60.0% |
| CGGGAAAGGGTCCCACCATT+TGG | - | tig0029620:22807-22826 | None:intergenic | 60.0% | |
| CTCCCACATATGCAGGGTCC+GGG | - | tig0029620:22826-22845 | None:intergenic | 60.0% | |
| GCTCCCACATATGCAGGGTC+CGG | - | tig0029620:22827-22846 | None:intergenic | 60.0% | |
| ! | TGTGGGAGCTCTAGTGCACC+GGG | + | tig0029620:22838-22857 | Msa1442080:intron | 60.0% |
| GTAATTGAGCGGCGGCGGCA+GGG | - | tig0029620:18963-18982 | None:intergenic | 65.0% | |
| ! | TAGCGGATAGCGGCGCGTAG+CGG | - | tig0029620:20088-20107 | None:intergenic | 65.0% |
| GGTAATTGAGCGGCGGCGGC+AGG | - | tig0029620:18964-18983 | None:intergenic | 70.0% | |
| GCACAGCGCGGGCGCTATAG+CGG | - | tig0029620:19574-19593 | None:intergenic | 70.0% | |
| GCTATAGCGCCCGCGCTGTG+CGG | + | tig0029620:19573-19592 | Msa1442080:intron | 70.0% | |
| ACTCCGGCACCGCACAGCGC+GGG | - | tig0029620:19585-19604 | None:intergenic | 75.0% | |
| CACTCCGGCACCGCACAGCG+CGG | - | tig0029620:19586-19605 | None:intergenic | 75.0% | |
| ! | GCGCCCGCGCTGTGCGGTGC+CGG | + | tig0029620:19579-19598 | Msa1442080:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0029620 | gene | 18899 | 24737 | 18899 | ID=Msa1442080;Name=Msa1442080 |
| tig0029620 | mRNA | 18899 | 24737 | 18899 | ID=Msa1442080-mRNA-1;Parent=Msa1442080;Name=Msa1442080-mRNA-1;_AED=0.08;_eAED=0.08;_QI=113|1|1|1|0.5|0.66|3|184|425 |
| tig0029620 | exon | 18899 | 19011 | 18899 | ID=Msa1442080-mRNA-1:exon:13184;Parent=Msa1442080-mRNA-1 |
| tig0029620 | exon | 19102 | 19318 | 19102 | ID=Msa1442080-mRNA-1:exon:13185;Parent=Msa1442080-mRNA-1 |
| tig0029620 | exon | 23493 | 24737 | 23493 | ID=Msa1442080-mRNA-1:exon:13186;Parent=Msa1442080-mRNA-1 |
| tig0029620 | five_prime_UTR | 18899 | 19011 | 18899 | ID=Msa1442080-mRNA-1:five_prime_utr;Parent=Msa1442080-mRNA-1 |
| tig0029620 | CDS | 19102 | 19318 | 19102 | ID=Msa1442080-mRNA-1:cds;Parent=Msa1442080-mRNA-1 |
| tig0029620 | CDS | 23493 | 24553 | 23493 | ID=Msa1442080-mRNA-1:cds;Parent=Msa1442080-mRNA-1 |
| tig0029620 | three_prime_UTR | 24554 | 24737 | 24554 | ID=Msa1442080-mRNA-1:three_prime_utr;Parent=Msa1442080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
