Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444470 | G7IPZ5 | 84.685 | 333 | 51 | 0 | 11 | 343 | 34 | 366 | 0.0 | 583 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1444470 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444470 | MtrunA17_Chr2g0286191 | 84.685 | 333 | 51 | 0 | 11 | 343 | 34 | 366 | 0.0 | 583 |
| Msa1444470 | MtrunA17_Chr2g0295761 | 47.748 | 333 | 159 | 5 | 12 | 336 | 64 | 389 | 2.95e-98 | 296 |
| Msa1444470 | MtrunA17_Chr2g0295731 | 46.505 | 329 | 170 | 4 | 12 | 336 | 51 | 377 | 1.19e-97 | 294 |
| Msa1444470 | MtrunA17_Chr2g0295741 | 46.526 | 331 | 167 | 5 | 12 | 336 | 50 | 376 | 5.54e-94 | 285 |
| Msa1444470 | MtrunA17_Chr4g0067121 | 46.037 | 328 | 172 | 4 | 12 | 336 | 55 | 380 | 6.51e-93 | 282 |
| Msa1444470 | MtrunA17_Chr2g0296121 | 47.112 | 329 | 168 | 4 | 12 | 336 | 130 | 456 | 1.90e-92 | 283 |
| Msa1444470 | MtrunA17_Chr2g0296151 | 46.667 | 330 | 170 | 4 | 11 | 336 | 43 | 370 | 9.14e-92 | 279 |
| Msa1444470 | MtrunA17_Chr2g0296111 | 46.726 | 336 | 160 | 6 | 12 | 336 | 43 | 370 | 1.12e-86 | 266 |
| Msa1444470 | MtrunA17_Chr2g0286221 | 76.074 | 163 | 39 | 0 | 178 | 340 | 11 | 173 | 1.34e-86 | 258 |
| Msa1444470 | MtrunA17_Chr2g0296301 | 42.638 | 326 | 185 | 2 | 12 | 335 | 40 | 365 | 2.66e-85 | 263 |
| Msa1444470 | MtrunA17_Chr2g0296711 | 41.860 | 344 | 181 | 7 | 12 | 343 | 57 | 393 | 3.94e-80 | 251 |
| Msa1444470 | MtrunA17_Chr2g0296291 | 39.071 | 366 | 181 | 6 | 11 | 336 | 35 | 398 | 3.61e-75 | 237 |
| Msa1444470 | MtrunA17_Chr4g0067671 | 41.772 | 316 | 168 | 6 | 12 | 319 | 48 | 355 | 1.49e-73 | 231 |
| Msa1444470 | MtrunA17_Chr2g0296251 | 39.108 | 381 | 178 | 7 | 2 | 336 | 26 | 398 | 2.62e-73 | 232 |
| Msa1444470 | MtrunA17_Chr4g0067141 | 40.059 | 337 | 187 | 5 | 11 | 340 | 47 | 375 | 1.15e-72 | 229 |
| Msa1444470 | MtrunA17_Chr2g0296191 | 40.964 | 332 | 182 | 4 | 11 | 335 | 185 | 509 | 1.61e-71 | 240 |
| Msa1444470 | MtrunA17_Chr2g0296191 | 40.000 | 335 | 180 | 8 | 13 | 333 | 667 | 994 | 1.97e-62 | 214 |
| Msa1444470 | MtrunA17_Chr2g0315731 | 40.719 | 334 | 185 | 7 | 12 | 336 | 74 | 403 | 2.28e-71 | 228 |
| Msa1444470 | MtrunA17_Chr2g0296741 | 40.413 | 339 | 179 | 9 | 12 | 336 | 74 | 403 | 3.50e-71 | 227 |
| Msa1444470 | MtrunA17_Chr2g0296721 | 40.483 | 331 | 189 | 6 | 12 | 336 | 54 | 382 | 1.07e-69 | 223 |
| Msa1444470 | MtrunA17_Chr2g0296231 | 40.950 | 337 | 178 | 8 | 12 | 336 | 53 | 380 | 1.61e-69 | 222 |
| Msa1444470 | MtrunA17_Chr2g0296221 | 40.413 | 339 | 181 | 8 | 12 | 336 | 83 | 414 | 2.63e-68 | 220 |
| Msa1444470 | MtrunA17_Chr2g0296171 | 39.883 | 341 | 184 | 8 | 12 | 338 | 64 | 397 | 1.22e-67 | 218 |
| Msa1444470 | MtrunA17_Chr4g0001831 | 37.994 | 329 | 197 | 4 | 15 | 337 | 44 | 371 | 4.42e-65 | 210 |
| Msa1444470 | MtrunA17_Chr2g0296181 | 38.671 | 331 | 169 | 6 | 12 | 336 | 55 | 357 | 2.61e-61 | 201 |
| Msa1444470 | MtrunA17_Chr2g0296131 | 49.020 | 153 | 76 | 2 | 185 | 335 | 9 | 161 | 1.30e-42 | 145 |
| Msa1444470 | MtrunA17_Chr2g0296551 | 44.505 | 182 | 97 | 3 | 157 | 336 | 5 | 184 | 1.83e-42 | 146 |
| Msa1444470 | MtrunA17_Chr2g0296161 | 50.000 | 156 | 76 | 2 | 183 | 336 | 3 | 158 | 2.46e-42 | 145 |
| Msa1444470 | MtrunA17_Chr2g0296211 | 34.708 | 291 | 159 | 8 | 68 | 336 | 77 | 358 | 2.25e-40 | 145 |
| Msa1444470 | MtrunA17_Chr2g0296701 | 48.684 | 152 | 76 | 2 | 187 | 336 | 5 | 156 | 2.72e-39 | 137 |
| Msa1444470 | MtrunA17_Chr8g0377781 | 31.987 | 297 | 195 | 5 | 39 | 330 | 74 | 368 | 1.60e-36 | 135 |
| Msa1444470 | MtrunA17_Chr2g0295711 | 45.205 | 146 | 78 | 1 | 12 | 155 | 50 | 195 | 8.42e-35 | 126 |
| Msa1444470 | MtrunA17_Chr8g0377801 | 29.180 | 305 | 209 | 5 | 35 | 334 | 83 | 385 | 1.87e-34 | 130 |
| Msa1444470 | MtrunA17_Chr2g0296751 | 50.394 | 127 | 62 | 1 | 211 | 336 | 3 | 129 | 1.03e-33 | 122 |
| Msa1444470 | MtrunA17_Chr2g0295721 | 51.754 | 114 | 54 | 1 | 183 | 295 | 3 | 116 | 2.48e-32 | 117 |
| Msa1444470 | MtrunA17_Chr2g0295751 | 47.794 | 136 | 64 | 2 | 6 | 134 | 40 | 175 | 2.63e-31 | 123 |
| Msa1444470 | MtrunA17_Chr2g0296561 | 43.200 | 125 | 64 | 2 | 6 | 129 | 34 | 152 | 1.86e-20 | 86.7 |
| Msa1444470 | MtrunA17_Chr4g0067131 | 46.914 | 81 | 42 | 1 | 253 | 332 | 1 | 81 | 2.47e-17 | 75.9 |
| Msa1444470 | MtrunA17_Chr8g0339041 | 21.122 | 303 | 210 | 10 | 51 | 337 | 62 | 351 | 3.51e-13 | 69.7 |
| Msa1444470 | MtrunA17_Chr4g0067681 | 48.333 | 60 | 31 | 0 | 242 | 301 | 1 | 60 | 2.97e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444470 | AT5G07900.1 | 37.082 | 329 | 201 | 4 | 11 | 333 | 71 | 399 | 1.09e-72 | 231 |
| Msa1444470 | AT1G21150.3 | 33.628 | 339 | 219 | 3 | 5 | 337 | 16 | 354 | 1.50e-57 | 190 |
| Msa1444470 | AT1G21150.1 | 33.934 | 333 | 214 | 3 | 11 | 337 | 58 | 390 | 6.01e-57 | 190 |
| Msa1444470 | AT1G21150.2 | 33.934 | 333 | 214 | 3 | 11 | 337 | 122 | 454 | 2.55e-56 | 190 |
| Msa1444470 | AT1G61980.3 | 28.533 | 375 | 219 | 10 | 3 | 333 | 46 | 415 | 8.08e-40 | 145 |
| Msa1444470 | AT1G61980.2 | 28.533 | 375 | 219 | 10 | 3 | 333 | 46 | 415 | 8.08e-40 | 145 |
| Msa1444470 | AT1G61980.1 | 28.533 | 375 | 219 | 10 | 3 | 333 | 46 | 415 | 8.08e-40 | 145 |
| Msa1444470 | AT1G61970.2 | 27.926 | 376 | 220 | 10 | 3 | 333 | 46 | 415 | 2.57e-37 | 139 |
| Msa1444470 | AT1G61970.7 | 27.926 | 376 | 220 | 10 | 3 | 333 | 46 | 415 | 2.57e-37 | 139 |
| Msa1444470 | AT1G61970.6 | 27.926 | 376 | 220 | 10 | 3 | 333 | 46 | 415 | 2.57e-37 | 139 |
| Msa1444470 | AT1G61970.3 | 27.926 | 376 | 220 | 10 | 3 | 333 | 46 | 415 | 2.57e-37 | 139 |
| Msa1444470 | AT1G61970.5 | 27.926 | 376 | 220 | 10 | 3 | 333 | 46 | 415 | 2.57e-37 | 139 |
| Msa1444470 | AT1G61970.4 | 27.926 | 376 | 220 | 10 | 3 | 333 | 46 | 415 | 2.57e-37 | 139 |
| Msa1444470 | AT1G61970.1 | 27.926 | 376 | 220 | 10 | 3 | 333 | 46 | 415 | 2.57e-37 | 139 |
| Msa1444470 | AT1G62120.1 | 27.105 | 380 | 226 | 11 | 4 | 337 | 51 | 425 | 4.18e-37 | 138 |
| Msa1444470 | AT1G61990.2 | 27.493 | 371 | 219 | 9 | 4 | 333 | 47 | 408 | 3.02e-35 | 133 |
| Msa1444470 | AT1G61990.1 | 27.493 | 371 | 219 | 9 | 4 | 333 | 47 | 408 | 3.02e-35 | 133 |
| Msa1444470 | AT1G62010.1 | 27.429 | 350 | 209 | 8 | 29 | 337 | 58 | 403 | 3.36e-35 | 133 |
| Msa1444470 | AT5G23930.1 | 28.061 | 392 | 202 | 9 | 11 | 329 | 57 | 441 | 1.10e-33 | 129 |
| Msa1444470 | AT1G62110.1 | 27.166 | 427 | 210 | 13 | 4 | 340 | 47 | 462 | 2.74e-33 | 128 |
| Msa1444470 | AT1G61960.1 | 26.980 | 404 | 208 | 13 | 11 | 333 | 54 | 451 | 3.28e-33 | 128 |
| Msa1444470 | AT1G62085.1 | 28.329 | 413 | 214 | 13 | 4 | 337 | 50 | 459 | 3.63e-33 | 128 |
| Msa1444470 | AT1G62085.2 | 28.329 | 413 | 214 | 13 | 4 | 337 | 50 | 459 | 3.63e-33 | 128 |
| Msa1444470 | AT1G62150.1 | 26.456 | 412 | 220 | 12 | 5 | 337 | 54 | 461 | 9.31e-32 | 124 |
| Msa1444470 | AT3G46950.1 | 31.818 | 242 | 155 | 5 | 11 | 249 | 54 | 288 | 2.47e-30 | 120 |
| Msa1444470 | AT5G64950.1 | 27.164 | 335 | 225 | 7 | 16 | 334 | 45 | 376 | 3.15e-27 | 110 |
| Msa1444470 | AT1G56380.1 | 25.620 | 363 | 216 | 11 | 11 | 325 | 18 | 374 | 5.45e-22 | 96.3 |
| Msa1444470 | AT1G56380.2 | 25.620 | 363 | 216 | 11 | 11 | 325 | 29 | 385 | 5.80e-22 | 96.3 |
| Msa1444470 | AT1G79220.1 | 24.080 | 299 | 186 | 5 | 45 | 338 | 119 | 381 | 1.55e-15 | 77.4 |
Find 56 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTTCCCATACGGATTT+TGG | 0.131006 | tig0030729:-24856 | None:intergenic |
| GAAAGAAGGAAATTGAATTT+AGG | 0.170730 | tig0030729:-24463 | None:intergenic |
| AGACAACATAAGAGGATTTC+TGG | 0.180313 | tig0030729:-24524 | None:intergenic |
| ATTCAATTTCCTTCTTTCTA+AGG | 0.183402 | tig0030729:+24468 | Msa1444470:CDS |
| AAAGAAGGAAATTGAATTTA+GGG | 0.185509 | tig0030729:-24462 | None:intergenic |
| ATTCAATTCCTGCTTCAAAA+TGG | 0.189508 | tig0030729:+24676 | Msa1444470:CDS |
| GATGCTTCAACTTTCAAATA+AGG | 0.222209 | tig0030729:+25240 | Msa1444470:CDS |
| GAGAGTTTAGAAGCAGTTTC+TGG | 0.245687 | tig0030729:-24295 | None:intergenic |
| AATACTTCTTATGCTGAGTT+TGG | 0.261332 | tig0030729:+25041 | Msa1444470:CDS |
| TCAATCCAAAGGTTTGATTA+AGG | 0.262442 | tig0030729:+25104 | Msa1444470:CDS |
| GAGATGGGAATTTAGAATAA+AGG | 0.311834 | tig0030729:-24648 | None:intergenic |
| TTCAATTCCTGCTTCAAAAT+GGG | 0.338390 | tig0030729:+24677 | Msa1444470:CDS |
| AATAAGGCGATGACTGAATC+AGG | 0.360376 | tig0030729:-24349 | None:intergenic |
| AGTATTTGAGAAGGCAGTTT+TGG | 0.367653 | tig0030729:+24765 | Msa1444470:CDS |
| GATTAATGCGTATAAGAAAT+GGG | 0.369032 | tig0030729:+24879 | Msa1444470:CDS |
| TTTGATGAGAGATGATAATT+GGG | 0.380318 | tig0030729:-24395 | None:intergenic |
| AGATTAATGCGTATAAGAAA+TGG | 0.381339 | tig0030729:+24878 | Msa1444470:CDS |
| GAAATTGAATTTAGGGAGAA+TGG | 0.403378 | tig0030729:-24455 | None:intergenic |
| TTCAATTTCCTTCTTTCTAA+GGG | 0.407285 | tig0030729:+24469 | Msa1444470:CDS |
| AGCATCCTTAATCAAACCTT+TGG | 0.408692 | tig0030729:-25109 | None:intergenic |
| GAAACCATAGGATTTGAATA+AGG | 0.422117 | tig0030729:-24365 | None:intergenic |
| AAGCTTTGAGACAACATAAG+AGG | 0.427786 | tig0030729:-24532 | None:intergenic |
| AACTACCTCATTCAAAATTG+TGG | 0.437653 | tig0030729:+24265 | Msa1444470:CDS |
| TCTTATGTTGTCTCAAAGCT+TGG | 0.442901 | tig0030729:+24534 | Msa1444470:CDS |
| ATCGCCTTATTCAAATCCTA+TGG | 0.446132 | tig0030729:+24361 | Msa1444470:CDS |
| TTGAAGCACCCTTAGAAAGA+AGG | 0.450723 | tig0030729:-24477 | None:intergenic |
| AAACTCAGCATAAGAAGTAT+TGG | 0.453268 | tig0030729:-25039 | None:intergenic |
| ACTACCTCATTCAAAATTGT+GGG | 0.457092 | tig0030729:+24266 | Msa1444470:CDS |
| GACGATGGCGCAATGGTGAT+AGG | 0.461668 | tig0030729:+21750 | None:intergenic |
| TCTTAGCATGTAGTGCGATA+AGG | 0.479997 | tig0030729:-24828 | None:intergenic |
| TTGAAATTTCTTCAATCCAA+AGG | 0.481678 | tig0030729:+25093 | Msa1444470:CDS |
| CAGAGACTTTGAAAGGTGTA+GGG | 0.502615 | tig0030729:-25137 | None:intergenic |
| ATTAATCTTCCTTTCCCATA+CGG | 0.515016 | tig0030729:-24863 | None:intergenic |
| TCAATTCCTGCTTCAAAATG+GGG | 0.519084 | tig0030729:+24678 | Msa1444470:CDS |
| CTACATACCATTGTTGATGT+TGG | 0.534579 | tig0030729:-21781 | None:intergenic |
| GTCCAAAATCCGTATGGGAA+AGG | 0.543559 | tig0030729:+24854 | Msa1444470:CDS |
| ACTGCCTTCTCAAATACTGC+AGG | 0.547454 | tig0030729:-24760 | None:intergenic |
| AGATTAGTCCAAAATCCGTA+TGG | 0.549136 | tig0030729:+24848 | Msa1444470:CDS |
| GAAGTATCCATGGTGTATGT+TGG | 0.562557 | tig0030729:+24936 | Msa1444470:CDS |
| ATGGTGTATGTTGGCATCTG+TGG | 0.563796 | tig0030729:+24945 | Msa1444470:CDS |
| TCAGAGACTTTGAAAGGTGT+AGG | 0.564549 | tig0030729:-25138 | None:intergenic |
| ATCTCTCATCAAAACTCGCA+CGG | 0.575191 | tig0030729:+24405 | Msa1444470:CDS |
| TTTGATAAAATGATAACAAG+GGG | 0.581767 | tig0030729:-24569 | None:intergenic |
| AATTTCAACGCAAAAGCCCT+AGG | 0.586081 | tig0030729:-25078 | None:intergenic |
| GATTAGTCCAAAATCCGTAT+GGG | 0.594092 | tig0030729:+24849 | Msa1444470:CDS |
| ATTAATGCGTATAAGAAATG+GGG | 0.599170 | tig0030729:+24880 | Msa1444470:CDS |
| TTGGGAATTAGAGAAACCAT+AGG | 0.600081 | tig0030729:-24377 | None:intergenic |
| GAAACCTGCAGTATTTGAGA+AGG | 0.606941 | tig0030729:+24756 | Msa1444470:CDS |
| GAGATATGTGAATTGCTATG+AGG | 0.610774 | tig0030729:+25176 | Msa1444470:CDS |
| AGATCCTCAGAGACTTTGAA+AGG | 0.621290 | tig0030729:-25144 | None:intergenic |
| ATGCGTATAAGAAATGGGGT+TGG | 0.624037 | tig0030729:+24884 | Msa1444470:CDS |
| AGAGACTTTGAAAGGTGTAG+GGG | 0.645255 | tig0030729:-25136 | None:intergenic |
| TACACCTTTCAAAGTCTCTG+AGG | 0.664130 | tig0030729:+25140 | Msa1444470:CDS |
| ACAAGAGCAATGTTTGAGAG+CGG | 0.670001 | tig0030729:-24623 | None:intergenic |
| ACAGATGCCAACATACACCA+TGG | 0.670800 | tig0030729:-24943 | None:intergenic |
| AGAGCAACCAACATCAACAA+TGG | 0.680548 | tig0030729:+21774 | Msa1444470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAGTTATTTTGAAAAAA+GGG | - | tig0030729:23460-23479 | None:intergenic | 10.0% |
| !!! | AAAAAATATTTGTTTTGGTT+CGG | - | tig0030729:21965-21984 | None:intergenic | 15.0% |
| !!! | TGGATAAAAAATATTTGTTT+TGG | - | tig0030729:21970-21989 | None:intergenic | 15.0% |
| !!! | ATAAAAGTGATTTTATTCAT+TGG | - | tig0030729:21990-22009 | None:intergenic | 15.0% |
| !!! | TGAATAAGTTATTTTGAAAA+AGG | - | tig0030729:23458-23477 | None:intergenic | 15.0% |
| !! | TCAAAATAACTTATTCAAAA+CGG | + | tig0030729:22227-22246 | Msa1444470:intron | 15.0% |
| !!! | GAATAAGTTATTTTGAAAAA+AGG | - | tig0030729:23459-23478 | None:intergenic | 15.0% |
| !!! | TTGTTTTGAATAAGTTATTT+TGG | + | tig0030729:23786-23805 | Msa1444470:intron | 15.0% |
| !!! | TTTTGATAAAATGATAACAA+GGG | - | tig0030729:24573-24592 | None:intergenic | 15.0% |
| !!! | TGAATGAGTTATTTTGAAAA+AGG | - | tig0030729:22284-22303 | None:intergenic | 20.0% |
| !! | TTTATGTAAAACAGCTTATT+AGG | + | tig0030729:22434-22453 | Msa1444470:intron | 20.0% |
| !! | AACAACTTATTTATGCAAAA+CGG | + | tig0030729:22185-22204 | Msa1444470:intron | 20.0% |
| !! | AACAACTTATTTATGCAAAA+CGG | + | tig0030729:22185-22204 | Msa1444470:intron | 20.0% |
| !! | TTTACGTAAAACAACTTATT+AGG | + | tig0030729:22674-22693 | Msa1444470:intron | 20.0% |
| !!! | TGAGTAAGTTATTTTGAAAA+AGG | - | tig0030729:22704-22723 | None:intergenic | 20.0% |
| !! | TTTATGTAAAACAGCTTATT+AGG | + | tig0030729:22434-22453 | Msa1444470:intron | 20.0% |
| !!! | TGAATAAGTTGTTTTGAAAA+AGG | + | tig0030729:23279-23298 | Msa1444470:intron | 20.0% |
| !! | TTTACACAAAACAACTTATT+AGG | - | tig0030729:23370-23389 | None:intergenic | 20.0% |
| !! | ATTACTTAAAACAGCTTATT+AGG | - | tig0030729:23429-23448 | None:intergenic | 20.0% |
| !! | TTATGCAAAAACAACTTATT+AGG | - | tig0030729:23701-23720 | None:intergenic | 20.0% |
| !!! | TGAATAAGTTGTTTTGAAAA+AGG | + | tig0030729:23279-23298 | Msa1444470:intron | 20.0% |
| !! | TATTTACGTAAAAGCTTATT+AGG | - | tig0030729:23881-23900 | None:intergenic | 20.0% |
| !! | AAAGAAGGAAATTGAATTTA+GGG | - | tig0030729:24465-24484 | None:intergenic | 20.0% |
| !! | TTTGATAAAATGATAACAAG+GGG | - | tig0030729:24572-24591 | None:intergenic | 20.0% |
| !!! | CTTTTGATAAAATGATAACA+AGG | - | tig0030729:24574-24593 | None:intergenic | 20.0% |
| !!! | AAAAAAACAATTTTGGATTC+AGG | - | tig0030729:24706-24725 | None:intergenic | 20.0% |
| !!! | TCGAAACAAAAAAACAATTT+TGG | - | tig0030729:24713-24732 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTTGTTTCGAAAT+TGG | + | tig0030729:24716-24735 | Msa1444470:CDS | 20.0% |
| ! | TTGGTTAATAGGTAAGAAAA+TGG | - | tig0030729:21936-21955 | None:intergenic | 25.0% |
| ! | TTTACATACAACAGCTTATT+AGG | + | tig0030729:22254-22273 | Msa1444470:intron | 25.0% |
| ! | TTTATGCAAAACGACTTATT+AGG | + | tig0030729:22314-22333 | Msa1444470:intron | 25.0% |
| ! | AACAGCTTATTTATGCAAAA+CGG | + | tig0030729:22305-22324 | Msa1444470:intron | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | + | tig0030729:22794-22813 | Msa1444470:intron | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | + | tig0030729:22794-22813 | Msa1444470:intron | 25.0% |
| ! | TATATGCAAAACGACTTATT+AGG | + | tig0030729:23064-23083 | Msa1444470:intron | 25.0% |
| ! | TTATGCAAAAACAGCTTATT+AGG | + | tig0030729:23126-23145 | Msa1444470:intron | 25.0% |
| ! | AATAAGCTGTTTGAATAAGT+TGG | + | tig0030729:23207-23226 | Msa1444470:intron | 25.0% |
| ! | TTATGCAAAAACAGCTTATT+AGG | - | tig0030729:23126-23145 | None:intergenic | 25.0% |
| !! | AGATGTTTTGTGTAAATAAG+CGG | + | tig0030729:23552-23571 | Msa1444470:intron | 25.0% |
| ! | TTTACACAAAACAGCTTATT+AGG | - | tig0030729:23488-23507 | None:intergenic | 25.0% |
| !! | AGATGTTTTGTGTAAATAAG+CGG | + | tig0030729:23552-23571 | Msa1444470:intron | 25.0% |
| ! | TAATTGGATTCATACCATTA+GGG | - | tig0030729:24059-24078 | None:intergenic | 25.0% |
| ! | ATAATTGGATTCATACCATT+AGG | - | tig0030729:24060-24079 | None:intergenic | 25.0% |
| ! | AACTGAGAAGATAAGATAAT+TGG | - | tig0030729:24075-24094 | None:intergenic | 25.0% |
| ! | AGTTAGTAATAGTGAAACAA+GGG | + | tig0030729:24091-24110 | Msa1444470:intron | 25.0% |
| ! | AAGTAACAAAGCATGATAAT+TGG | - | tig0030729:24131-24150 | None:intergenic | 25.0% |
| ! | TTTGATGAGAGATGATAATT+GGG | - | tig0030729:24398-24417 | None:intergenic | 25.0% |
| !! | TTTTGATGAGAGATGATAAT+TGG | - | tig0030729:24399-24418 | None:intergenic | 25.0% |
| ! | GAAAGAAGGAAATTGAATTT+AGG | - | tig0030729:24466-24485 | None:intergenic | 25.0% |
| ! | ATTCAATTTCCTTCTTTCTA+AGG | + | tig0030729:24468-24487 | Msa1444470:CDS | 25.0% |
| ! | TTCAATTTCCTTCTTTCTAA+GGG | + | tig0030729:24469-24488 | Msa1444470:CDS | 25.0% |
| !!! | GGAATTGAATATTTTGAGAT+GGG | - | tig0030729:24666-24685 | None:intergenic | 25.0% |
| !!! | AGGAATTGAATATTTTGAGA+TGG | - | tig0030729:24667-24686 | None:intergenic | 25.0% |
| !!! | GTTTTGGAAGTAAAACAATT+AGG | + | tig0030729:24781-24800 | Msa1444470:CDS | 25.0% |
| ! | ATAAGGAAAAACGTATTGTT+AGG | - | tig0030729:24814-24833 | None:intergenic | 25.0% |
| ! | AGATTAATGCGTATAAGAAA+TGG | + | tig0030729:24878-24897 | Msa1444470:CDS | 25.0% |
| ! | GATTAATGCGTATAAGAAAT+GGG | + | tig0030729:24879-24898 | Msa1444470:CDS | 25.0% |
| ! | ATTAATGCGTATAAGAAATG+GGG | + | tig0030729:24880-24899 | Msa1444470:CDS | 25.0% |
| ! | TTGAAATTTCTTCAATCCAA+AGG | + | tig0030729:25093-25112 | Msa1444470:CDS | 25.0% |
| AACATCAACAATGGTATGTA+GGG | + | tig0030729:21783-21802 | Msa1444470:intron | 30.0% | |
| GGATACTTCCAAACTTTAAA+CGG | - | tig0030729:21884-21903 | None:intergenic | 30.0% | |
| !!! | ATATTTGTTTTGGTTCGGAT+CGG | - | tig0030729:21960-21979 | None:intergenic | 30.0% |
| TTTATGCAAAACGGCTTATT+AGG | + | tig0030729:22494-22513 | Msa1444470:intron | 30.0% | |
| TTTATGCAAAACGGCATATT+AGG | + | tig0030729:22554-22573 | Msa1444470:intron | 30.0% | |
| AATTGGATTCATACCATTAG+GGG | - | tig0030729:24058-24077 | None:intergenic | 30.0% | |
| CAGTTAGTAATAGTGAAACA+AGG | + | tig0030729:24090-24109 | Msa1444470:intron | 30.0% | |
| !!! | TATTGAGGTTTTGAATGAGA+GGG | - | tig0030729:24179-24198 | None:intergenic | 30.0% |
| !!! | TTATTGAGGTTTTGAATGAG+AGG | - | tig0030729:24180-24199 | None:intergenic | 30.0% |
| AAGAAGATGAAGAGTTATTG+AGG | - | tig0030729:24194-24213 | None:intergenic | 30.0% | |
| ! | GACTGTAAAAGAGTGATTTT+GGG | - | tig0030729:24245-24264 | None:intergenic | 30.0% |
| ! | TGACTGTAAAAGAGTGATTT+TGG | - | tig0030729:24246-24265 | None:intergenic | 30.0% |
| AACTACCTCATTCAAAATTG+TGG | + | tig0030729:24265-24284 | Msa1444470:CDS | 30.0% | |
| ACTACCTCATTCAAAATTGT+GGG | + | tig0030729:24266-24285 | Msa1444470:CDS | 30.0% | |
| ! | AAAACCCACAATTTTGAATG+AGG | - | tig0030729:24273-24292 | None:intergenic | 30.0% |
| GAAACCATAGGATTTGAATA+AGG | - | tig0030729:24368-24387 | None:intergenic | 30.0% | |
| GAAATTGAATTTAGGGAGAA+TGG | - | tig0030729:24458-24477 | None:intergenic | 30.0% | |
| ! | GAGATGGGAATTTAGAATAA+AGG | - | tig0030729:24651-24670 | None:intergenic | 30.0% |
| ATTCAATTCCTGCTTCAAAA+TGG | + | tig0030729:24676-24695 | Msa1444470:CDS | 30.0% | |
| TTCAATTCCTGCTTCAAAAT+GGG | + | tig0030729:24677-24696 | Msa1444470:CDS | 30.0% | |
| ATTAATCTTCCTTTCCCATA+CGG | - | tig0030729:24866-24885 | None:intergenic | 30.0% | |
| !!! | CAGTTTTTTGTCAATCACAT+GGG | + | tig0030729:24988-25007 | Msa1444470:CDS | 30.0% |
| ! | AAACTCAGCATAAGAAGTAT+TGG | - | tig0030729:25042-25061 | None:intergenic | 30.0% |
| AATACTTCTTATGCTGAGTT+TGG | + | tig0030729:25041-25060 | Msa1444470:CDS | 30.0% | |
| TTATGCTGAGTTTGGAAAAA+AGG | + | tig0030729:25049-25068 | Msa1444470:CDS | 30.0% | |
| TATGCTGAGTTTGGAAAAAA+GGG | + | tig0030729:25050-25069 | Msa1444470:CDS | 30.0% | |
| TCAATCCAAAGGTTTGATTA+AGG | + | tig0030729:25104-25123 | Msa1444470:CDS | 30.0% | |
| CTACATACCATTGTTGATGT+TGG | - | tig0030729:21784-21803 | None:intergenic | 35.0% | |
| CAACATCAACAATGGTATGT+AGG | + | tig0030729:21782-21801 | Msa1444470:intron | 35.0% | |
| ACATCAACAATGGTATGTAG+GGG | + | tig0030729:21784-21803 | Msa1444470:intron | 35.0% | |
| ACCATTTCAACACTTTGGTT+CGG | - | tig0030729:21842-21861 | None:intergenic | 35.0% | |
| !! | ACCAAAGTGTTGAAATGGTT+CGG | + | tig0030729:21843-21862 | Msa1444470:intron | 35.0% |
| ! | AAACCGAACCGTTTAAAGTT+TGG | + | tig0030729:21873-21892 | Msa1444470:intron | 35.0% |
| CTTCCAAACTTTAAACGGTT+CGG | - | tig0030729:21879-21898 | None:intergenic | 35.0% | |
| ACCATAACTTAGGTTCAGTT+CGG | - | tig0030729:21905-21924 | None:intergenic | 35.0% | |
| ACTGAACCTAAGTTATGGTT+CGG | + | tig0030729:21906-21925 | Msa1444470:intron | 35.0% | |
| !!! | ATTGAGGTTTTGAATGAGAG+GGG | - | tig0030729:24178-24197 | None:intergenic | 35.0% |
| ! | ATCGCCTTATTCAAATCCTA+TGG | + | tig0030729:24361-24380 | Msa1444470:CDS | 35.0% |
| TTGGGAATTAGAGAAACCAT+AGG | - | tig0030729:24380-24399 | None:intergenic | 35.0% | |
| !!! | TTAGGGAGAATGGTTTTGTT+GGG | - | tig0030729:24448-24467 | None:intergenic | 35.0% |
| !!! | TTTAGGGAGAATGGTTTTGT+TGG | - | tig0030729:24449-24468 | None:intergenic | 35.0% |
| AGACAACATAAGAGGATTTC+TGG | - | tig0030729:24527-24546 | None:intergenic | 35.0% | |
| !! | AAGCTTTGAGACAACATAAG+AGG | - | tig0030729:24535-24554 | None:intergenic | 35.0% |
| TCTTATGTTGTCTCAAAGCT+TGG | + | tig0030729:24534-24553 | Msa1444470:CDS | 35.0% | |
| TCAATTCCTGCTTCAAAATG+GGG | + | tig0030729:24678-24697 | Msa1444470:CDS | 35.0% | |
| ! | AGTATTTGAGAAGGCAGTTT+TGG | + | tig0030729:24765-24784 | Msa1444470:CDS | 35.0% |
| ! | AGATTAGTCCAAAATCCGTA+TGG | + | tig0030729:24848-24867 | Msa1444470:CDS | 35.0% |
| ! | GATTAGTCCAAAATCCGTAT+GGG | + | tig0030729:24849-24868 | Msa1444470:CDS | 35.0% |
| !!! | CAGCATTTTTGAAGTATCCA+TGG | + | tig0030729:24926-24945 | Msa1444470:CDS | 35.0% |
| !!! | GCAGTTTTTTGTCAATCACA+TGG | + | tig0030729:24987-25006 | Msa1444470:CDS | 35.0% |
| ! | TTTTTGTCAATCACATGGGT+TGG | + | tig0030729:24992-25011 | Msa1444470:CDS | 35.0% |
| ! | TTTTGTCAATCACATGGGTT+GGG | + | tig0030729:24993-25012 | Msa1444470:CDS | 35.0% |
| TGGAAAAAAGGGTTATTCCT+AGG | + | tig0030729:25061-25080 | Msa1444470:CDS | 35.0% | |
| GGAAAAAAGGGTTATTCCTA+GGG | + | tig0030729:25062-25081 | Msa1444470:CDS | 35.0% | |
| AGCATCCTTAATCAAACCTT+TGG | - | tig0030729:25112-25131 | None:intergenic | 35.0% | |
| GAGATATGTGAATTGCTATG+AGG | + | tig0030729:25176-25195 | Msa1444470:CDS | 35.0% | |
| AGAGCAACCAACATCAACAA+TGG | + | tig0030729:21774-21793 | Msa1444470:CDS | 40.0% | |
| !! | TTCAACACTTTGGTTCGGTT+CGG | - | tig0030729:21837-21856 | None:intergenic | 40.0% |
| !! | ACCGAACCAAAGTGTTGAAA+TGG | + | tig0030729:21838-21857 | Msa1444470:intron | 40.0% |
| TCCGAACCATTTCAACACTT+TGG | - | tig0030729:21847-21866 | None:intergenic | 40.0% | |
| TCCGAACTGAACCTAAGTTA+TGG | + | tig0030729:21901-21920 | Msa1444470:intron | 40.0% | |
| GGTTAACCGAACCATAACTT+AGG | - | tig0030729:21915-21934 | None:intergenic | 40.0% | |
| !! | TTCGGATCGGTTTGGTTAAT+AGG | - | tig0030729:21947-21966 | None:intergenic | 40.0% |
| !! | GTTTTGAATGAGAGGGGTTA+GGG | - | tig0030729:24172-24191 | None:intergenic | 40.0% |
| GAGAGTTTAGAAGCAGTTTC+TGG | - | tig0030729:24298-24317 | None:intergenic | 40.0% | |
| AATAAGGCGATGACTGAATC+AGG | - | tig0030729:24352-24371 | None:intergenic | 40.0% | |
| ATCTCTCATCAAAACTCGCA+CGG | + | tig0030729:24405-24424 | Msa1444470:CDS | 40.0% | |
| ! | TTGAAGCACCCTTAGAAAGA+AGG | - | tig0030729:24480-24499 | None:intergenic | 40.0% |
| ACAAGAGCAATGTTTGAGAG+CGG | - | tig0030729:24626-24645 | None:intergenic | 40.0% | |
| GAAACCTGCAGTATTTGAGA+AGG | + | tig0030729:24756-24775 | Msa1444470:CDS | 40.0% | |
| TCTTAGCATGTAGTGCGATA+AGG | - | tig0030729:24831-24850 | None:intergenic | 40.0% | |
| ! | TTCCTTTCCCATACGGATTT+TGG | - | tig0030729:24859-24878 | None:intergenic | 40.0% |
| ATGCGTATAAGAAATGGGGT+TGG | + | tig0030729:24884-24903 | Msa1444470:CDS | 40.0% | |
| ! | GAAGTATCCATGGTGTATGT+TGG | + | tig0030729:24936-24955 | Msa1444470:CDS | 40.0% |
| AATTTCAACGCAAAAGCCCT+AGG | - | tig0030729:25081-25100 | None:intergenic | 40.0% | |
| ! | AGAGACTTTGAAAGGTGTAG+GGG | - | tig0030729:25139-25158 | None:intergenic | 40.0% |
| ! | CAGAGACTTTGAAAGGTGTA+GGG | - | tig0030729:25140-25159 | None:intergenic | 40.0% |
| ! | TCAGAGACTTTGAAAGGTGT+AGG | - | tig0030729:25141-25160 | None:intergenic | 40.0% |
| TACACCTTTCAAAGTCTCTG+AGG | + | tig0030729:25140-25159 | Msa1444470:CDS | 40.0% | |
| AGATCCTCAGAGACTTTGAA+AGG | - | tig0030729:25147-25166 | None:intergenic | 40.0% | |
| TCAACAATGGTATGTAGGGG+TGG | + | tig0030729:21787-21806 | Msa1444470:intron | 45.0% | |
| CAACAATGGTATGTAGGGGT+GGG | + | tig0030729:21788-21807 | Msa1444470:intron | 45.0% | |
| !! | TTGGTTCGGTTCGGTTAACA+TGG | - | tig0030729:21828-21847 | None:intergenic | 45.0% |
| !!! | TGTTTTGGTTCGGATCGGTT+TGG | - | tig0030729:21955-21974 | None:intergenic | 45.0% |
| !!! | CTTATTTTGCCCACCCCTAA+TGG | + | tig0030729:24042-24061 | Msa1444470:intron | 45.0% |
| GGATTCATACCATTAGGGGT+GGG | - | tig0030729:24054-24073 | None:intergenic | 45.0% | |
| TGGATTCATACCATTAGGGG+TGG | - | tig0030729:24055-24074 | None:intergenic | 45.0% | |
| !!! | GGTTTTGAATGAGAGGGGTT+AGG | - | tig0030729:24173-24192 | None:intergenic | 45.0% |
| ACTGCCTTCTCAAATACTGC+AGG | - | tig0030729:24763-24782 | None:intergenic | 45.0% | |
| GTCCAAAATCCGTATGGGAA+AGG | + | tig0030729:24854-24873 | Msa1444470:CDS | 45.0% | |
| ACAGATGCCAACATACACCA+TGG | - | tig0030729:24946-24965 | None:intergenic | 45.0% | |
| ATGGTGTATGTTGGCATCTG+TGG | + | tig0030729:24945-24964 | Msa1444470:CDS | 45.0% | |
| !!! | CAGGAACCCCATTTTGAAGC+AGG | - | tig0030729:24687-24706 | None:intergenic | 50.0% |
| ATGGTATGTAGGGGTGGGCA+TGG | + | tig0030729:21793-21812 | Msa1444470:intron | 55.0% | |
| ATGTAGGGGTGGGCATGGTT+CGG | + | tig0030729:21798-21817 | Msa1444470:intron | 55.0% | |
| GAGGGGTTAGGGCAGAGTAA+TGG | - | tig0030729:24161-24180 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030729 | gene | 21762 | 25260 | 21762 | ID=Msa1444470;Name=Msa1444470 |
| tig0030729 | mRNA | 21762 | 25260 | 21762 | ID=Msa1444470-mRNA-1;Parent=Msa1444470;Name=Msa1444470-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|0.5|1|1|2|0|343 |
| tig0030729 | exon | 21762 | 21795 | 21762 | ID=Msa1444470-mRNA-1:exon:14497;Parent=Msa1444470-mRNA-1 |
| tig0030729 | exon | 24263 | 25260 | 24263 | ID=Msa1444470-mRNA-1:exon:14498;Parent=Msa1444470-mRNA-1 |
| tig0030729 | CDS | 21762 | 21795 | 21762 | ID=Msa1444470-mRNA-1:cds;Parent=Msa1444470-mRNA-1 |
| tig0030729 | CDS | 24263 | 25260 | 24263 | ID=Msa1444470-mRNA-1:cds;Parent=Msa1444470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
