AlfalfaGEDB | Msa1444620

M. sativa cultivar zhongmu-4 / Msa1444620

KEGG: K17604
GO: -
PFAM: PF13456.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1444620	sp\|Q9SWG3\|FAR1_ARATH	32.656	738	434	16	212	923	48	748	7.97e-124	400

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1444620	A0A2Z6P9Q3	69.089	812	221	7	181	978	30	825	0.0	1175

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TFs/TRs:

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Gene ID	Type	Classification
Msa1444620	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1444620	MtrunA17_Chr2g0296781	72.689	714	182	4	221	922	3	715	0.0	1087
Msa1444620	MtrunA17_Chr6g0477261	71.561	647	161	5	330	954	1	646	0.0	952
Msa1444620	MtrunA17_Chr1g0196541	60.131	765	260	6	221	980	3	727	0.0	926
Msa1444620	MtrunA17_Chr5g0441581	44.978	687	354	9	201	876	15	688	0.0	588
Msa1444620	MtrunA17_Chr2g0291581	37.110	609	351	11	173	775	40	622	1.81e-125	397
Msa1444620	MtrunA17_Chr1g0207551	37.326	576	335	7	212	776	31	591	1.02e-120	388
Msa1444620	MtrunA17_Chr2g0329031	35.484	589	347	10	221	800	20	584	2.19e-120	385
Msa1444620	MtrunA17_Chr5g0448761	36.915	577	342	12	212	774	57	625	7.46e-118	380
Msa1444620	MtrunA17_Chr3g0080351	34.528	614	351	9	214	809	75	655	1.25e-117	380
Msa1444620	MtrunA17_Chr1g0202341	36.348	575	339	12	214	775	50	610	3.04e-113	364

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1444620	AT4G15090.1	32.656	738	434	16	212	923	48	748	8.10e-125	400
Msa1444620	AT4G15090.5	32.656	738	434	16	212	923	48	748	8.10e-125	400
Msa1444620	AT4G15090.3	32.656	738	434	16	212	923	48	748	8.10e-125	400
Msa1444620	AT4G15090.2	32.656	738	434	16	212	923	48	748	8.10e-125	400
Msa1444620	AT4G15090.4	32.656	738	434	16	212	923	48	748	8.10e-125	400
Msa1444620	AT1G76320.3	36.585	574	326	12	221	781	3	551	2.92e-116	372
Msa1444620	AT1G76320.1	36.585	574	326	12	221	781	3	551	3.53e-116	374
Msa1444620	AT1G76320.4	36.585	574	326	12	221	781	3	551	3.53e-116	374
Msa1444620	AT1G76320.2	36.585	574	326	12	221	781	3	551	3.76e-116	374
Msa1444620	AT4G38180.1	35.025	591	358	10	198	774	56	634	1.68e-113	369

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Find 150 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCAAAGAATTTCAAG+TGG	0.644675	tig0030761:+34894	Msa1444620:CDS
AAAGACGACATTTCCGAGTT+TGG	0.286366	tig0030761:+32204	Msa1444620:CDS
AAAGCTTCGCCAACCCGAAC+CGG	0.455044	tig0030761:-32081	None:intergenic
AAAGTGAGGAGACTACGACT+TGG	0.649574	tig0030761:+33995	Msa1444620:CDS
AACCATCTTCCACAATGCCA+GGG	0.580735	tig0030761:-35386	None:intergenic
AACGTGTCTCTCACATATGC+AGG	0.530851	tig0030761:-34643	None:intergenic
AACTCTCAGGTTGAGTTCAC+TGG	0.357734	tig0030761:+32273	Msa1444620:CDS
AAGAGTTATGCACAATCTAT+GGG	0.515967	tig0030761:+33569	Msa1444620:CDS
AAGGAAAACAAGGCTGATTT+TGG	0.221363	tig0030761:+34796	Msa1444620:CDS
AAGGGCGTCCTCCTTCAAAA+AGG	0.415773	tig0030761:+35460	Msa1444620:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAATGATGAAACAACACTT+TGG	+	tig0030761:30677-30696	Msa1444620:intron	30.0%
TTATAGGGACTAAAAGTTGA+AGG	-	tig0030761:31276-31295	None:intergenic	30.0%
TTATAGGGACTAAAAGTTGA+AGG	+	tig0030761:31276-31295	Msa1444620:intron	30.0%
GACTTCAAAATTCACCTAAA+AGG	-	tig0030761:31484-31503	None:intergenic	30.0%
TCATCTTCATTGTCAATGAT+TGG	+	tig0030761:31533-31552	Msa1444620:intron	30.0%
TGATATGCAATTTGATACTG+TGG	+	tig0030761:32134-32153	Msa1444620:CDS	30.0%
AGGACAATACAAAACTCAAA+AGG	-	tig0030761:32757-32776	None:intergenic	30.0%
ATTTGTATCTTCTGATGAAG+AGG	+	tig0030761:33427-33446	Msa1444620:CDS	30.0%
AAGAGTTATGCACAATCTAT+GGG	+	tig0030761:33569-33588	Msa1444620:CDS	30.0%
TTTAACAAAAACCAAGTGCA+AGG	+	tig0030761:33712-33731	Msa1444620:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0030761	gene	30591	36191	30591	ID=Msa1444620;Name=Msa1444620
tig0030761	mRNA	30591	36191	30591	ID=Msa1444620-mRNA-1;Parent=Msa1444620;Name=Msa1444620-mRNA-1;_AED=0.31;_eAED=0.13;_QI=0\|0.33\|0.14\|0.71\|1\|1\|7\|0\|990
tig0030761	exon	30591	30662	30591	ID=Msa1444620-mRNA-1:exon:14557;Parent=Msa1444620-mRNA-1
tig0030761	exon	31913	32381	31913	ID=Msa1444620-mRNA-1:exon:14558;Parent=Msa1444620-mRNA-1
tig0030761	exon	33417	35569	33417	ID=Msa1444620-mRNA-1:exon:14559;Parent=Msa1444620-mRNA-1
tig0030761	exon	35641	35712	35641	ID=Msa1444620-mRNA-1:exon:14560;Parent=Msa1444620-mRNA-1
tig0030761	exon	35814	35909	35814	ID=Msa1444620-mRNA-1:exon:14561;Parent=Msa1444620-mRNA-1
tig0030761	exon	35992	36048	35992	ID=Msa1444620-mRNA-1:exon:14562;Parent=Msa1444620-mRNA-1
tig0030761	exon	36138	36191	36138	ID=Msa1444620-mRNA-1:exon:14563;Parent=Msa1444620-mRNA-1
tig0030761	CDS	30591	30662	30591	ID=Msa1444620-mRNA-1:cds;Parent=Msa1444620-mRNA-1
tig0030761	CDS	31913	32381	31913	ID=Msa1444620-mRNA-1:cds;Parent=Msa1444620-mRNA-1
tig0030761	CDS	33417	35569	33417	ID=Msa1444620-mRNA-1:cds;Parent=Msa1444620-mRNA-1
tig0030761	CDS	35641	35712	35641	ID=Msa1444620-mRNA-1:cds;Parent=Msa1444620-mRNA-1
tig0030761	CDS	35814	35909	35814	ID=Msa1444620-mRNA-1:cds;Parent=Msa1444620-mRNA-1
tig0030761	CDS	35992	36048	35992	ID=Msa1444620-mRNA-1:cds;Parent=Msa1444620-mRNA-1
tig0030761	CDS	36138	36191	36138	ID=Msa1444620-mRNA-1:cds;Parent=Msa1444620-mRNA-1

Gene Sequence

>Msa1444620

ATGAAATTGCAATTGGAATTTGGTGAAATTGGAGTGGAAGCGAGGAATGGAATGAAAATGAATGTGTTGTTGCCTCTTGTGCCTTCTGTTTCTTGCCAACTACCTTCCCGTGATCGCTTTAAGTGCAACGTTGATGCAGGCTTTTCTACGTCGAAGAATAGAACCGGTATTGGTATTTGTGTGCGAGATGATGATGGTGCTTATGTGCTCGCTAAAACAGTTAATTTTGATGTTGTTCATCCGGTTCGGGTTGGCGAAGCTTTGTGTTTATATCATGCTTTAGAATGGCTAAGTGATATGCAATTTGATACTGTGGACTTCGCAATTGATTCTAAAATTACTTATGATGCTTTTCACTCTCAGAAAGACGACATTTCCGAGTTTGGACATATCATTTCGGCTTGCCAATCCCTTTTCTCCACTCACTTTACAAACTCTCAGGTTGAGTTCACTGGGCGACAAGCGAATGCGGCAGCTCATGCACTTGCAGGGGAGGCCACTTTTTTAGCTAGTCCCGTCATTTATTTTAATATCCCGCATTTGGAAGAAGTATTTGTATCTTCTGATGAAGAGGAAATTAGAGAGGGAAATAATAATTTTGATGATAGTTTAGAAGAAGATATTGTTCATGAAGATGAAAAACCTCAGGTTGGAACTATATTTAGCTCTAAAGATGAACTTTTTGAGTATTACAAGAGTTATGCACAATCTATGGGTTTTGGAGTTACTAAACTTAGTAACAAAAATACAGATGATGGGAAAAAATACTTTACTCTAGCATGTAGTCGTGGATCAAAGTATGTGAGTAAGGCGAAGAAGCTTTTGAACCCAAATCCTTTAACAAAAACCAAGTGCAAGGCTAGATTGAATGCATGTATTTCTTTAGATGGAACTGTTACTATTACAAAACTTTTTCTTGAGCATAATCATGATCTAATCCCTGACAAAGCACGCTATTTTAGAAGTAGTAAGTTTTTGGATCCTCGTTTGAAAAGGAGGTTAGAACTCAATGATCAAGCTGGAATAAATGTAAGCAGAAATTTTCGATCAATAGTTGTTGAAGCAAATGGTTATGAGAATATGACATTTGGTGAAAAGGACTGTAGAAATTATATAGATAAAGTGAGGAGACTACGACTTGGGGCTGGAGATGCTGAGGCTATTCAAAATTATTTCGTTAAAATGCAAAAGCAAAATAGTCAGTTCTATTATGTAATAGACATTGATGATAAAAGTCGCTTACGAAATGTTTTTTGGGCAGATGCGAGATGTAGGGCTGCATATGAATATTTTGGTGAAGTCGTAACATTTGACACTACTTACTTAACAAATAAGTATGACATGCCTTTTGCCCCATTTGTTGGAGTAAACCATCATGGCCAATCTGTGTTGTTGGGCTGTGCTTTATTGTCGAAGGAGGATACTAAGTCCTTTACTTGGTTATTCCAAACATGGTTAGAGTGCATGCATGGACGTGCTCCAAATGCCATAATTACCGATCAAGACAGATCCATGAAAAATGCAATTGCGGCTGTTTTCCCAAAAGCTCGTCATCGATGGTGTTTGTGGCATATAATGAAAAAGGTTCCAGAAAAGCTAAGTAGATACTCCGATTACGAGTCTATGAAAACACTTTTGCATGATGCTGTATATGATTCTTTGAGTAAGAGTGATTTCATGGAAAAGTGGGAAAGAATGATTGAAGATTTTGAACTTCATGATAATGAATGGTTGAAGGGGTTATTTGATGAAAGAAATCATTGGGTTCCTGCATATGTGAGAGACACGTTTTGGGCGGGAATGTCAACGACTCAAAGAAGTGAAAGTATGAACTCGTTTTTTGATGGATATGTAAATTCAAAGACAGCATTGAAGCAATTTGTTGAACAATATGACAATGCATTGAGAGATAAAGTTGAAAAGGAAAACAAGGCTGATTTTGGTTCATTTAATACAGTGATAGCTTGTATAAGTCATTTTGGCTTTGAGTTGCAATTCCAGAAAGCATTCACCAATGCAAAATTCAAAGAATTTCAAGTGGAGGTTGCTTCTATGATTTACTGTCATACTTGCTTTGAGAGATTGGAAGGATCAAATTCTATATATTCTGTTATAGAGAGCAAGAAAAACTTTGACATAATTAAAGATATAGTGTTTGAGGTATCCTTCAATGAGAAAGACTTTGAGTTACGTTGTATGTGTTGTTTGTTTCAATTCAAAGGTATTTTATGTAGGCACATCCTTTGTGTTCTAAAGTTAACAGGAAAAACAGAGTCATTGCCATCCTCTTATATTTTCTCTCAGTGGAGGAAGGATATAAGACGAAGACATACCCTTGTTAAATGTGGTTTTGATCATTTAGTTGGAAATGCTAAATTGCAAAGAGTTGATAAAGCATGTGCTGACTTTTATGAAGTTGCTTCTGAGGTGATTAATACCGATGATGATTTGTTTAAAATGAGGAATTGGATCAAGGAAGTAAAAAATGAGTTTTCCTCTAAAGAAGCATCCCCTGGCATTGTGGAAGATGGTTCAGTTCAAAATCAAGTGATTAAAATTCTTGACCCTATACCGACTCGAAGTAAAGGGCGTCCTCCTTCAAAAAGGAAGTCTTCTAAAGTTGATCAAATTGTGAAGAAAATTTCAAAAAAGAAGACCCAAAAAAGAAGTCAACAGAGTGGAACTCAACAAGAGGGCCTGTGTGCATCTAAAGTACAAGAGAGTGTTCAAGTAGTTGATGTAGTTGGCACACAAGAGAGTGTTCAAGGGGAACAAATTAGTTTTGGGAGGAATGGACATGGTGGTGTAAATAATTTAGCTCCCTTCAATCCAAATTCAATACTTATGAGTGAAGTAAATCAGGTTCCATTTTATTCTCAATTCATGAATCATGGTGTTTCCTATTTTGAATTGTTACAGGCACAACACAATGTGAATGATCCGTTGCTGTCATCAATAACACGTGAATCATAA

Protein sequence

>Msa1444620

MKLQLEFGEIGVEARNGMKMNVLLPLVPSVSCQLPSRDRFKCNVDAGFSTSKNRTGIGICVRDDDGAYVLAKTVNFDVVHPVRVGEALCLYHALEWLSDMQFDTVDFAIDSKITYDAFHSQKDDISEFGHIISACQSLFSTHFTNSQVEFTGRQANAAAHALAGEATFLASPVIYFNIPHLEEVFVSSDEEEIREGNNNFDDSLEEDIVHEDEKPQVGTIFSSKDELFEYYKSYAQSMGFGVTKLSNKNTDDGKKYFTLACSRGSKYVSKAKKLLNPNPLTKTKCKARLNACISLDGTVTITKLFLEHNHDLIPDKARYFRSSKFLDPRLKRRLELNDQAGINVSRNFRSIVVEANGYENMTFGEKDCRNYIDKVRRLRLGAGDAEAIQNYFVKMQKQNSQFYYVIDIDDKSRLRNVFWADARCRAAYEYFGEVVTFDTTYLTNKYDMPFAPFVGVNHHGQSVLLGCALLSKEDTKSFTWLFQTWLECMHGRAPNAIITDQDRSMKNAIAAVFPKARHRWCLWHIMKKVPEKLSRYSDYESMKTLLHDAVYDSLSKSDFMEKWERMIEDFELHDNEWLKGLFDERNHWVPAYVRDTFWAGMSTTQRSESMNSFFDGYVNSKTALKQFVEQYDNALRDKVEKENKADFGSFNTVIACISHFGFELQFQKAFTNAKFKEFQVEVASMIYCHTCFERLEGSNSIYSVIESKKNFDIIKDIVFEVSFNEKDFELRCMCCLFQFKGILCRHILCVLKLTGKTESLPSSYIFSQWRKDIRRRHTLVKCGFDHLVGNAKLQRVDKACADFYEVASEVINTDDDLFKMRNWIKEVKNEFSSKEASPGIVEDGSVQNQVIKILDPIPTRSKGRPPSKRKSSKVDQIVKKISKKKTQKRSQQSGTQQEGLCASKVQESVQVVDVVGTQESVQGEQISFGRNGHGGVNNLAPFNPNSILMSEVNQVPFYSQFMNHGVSYFELLQAQHNVNDPLLSSITRES*