Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445060 | sp|Q8LBW3|LBD12_ARATH | 78.195 | 133 | 25 | 1 | 7 | 135 | 5 | 137 | 5.74e-72 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445060 | G7K288 | 97.605 | 167 | 3 | 1 | 5 | 170 | 1 | 167 | 6.19e-118 | 340 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1445060 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445060 | MtrunA17_Chr5g0437571 | 97.605 | 167 | 3 | 1 | 5 | 170 | 1 | 167 | 1.19e-121 | 340 |
| Msa1445060 | MtrunA17_Chr3g0114061 | 72.561 | 164 | 36 | 4 | 5 | 164 | 1 | 159 | 1.28e-79 | 233 |
| Msa1445060 | MtrunA17_Chr3g0106101 | 65.341 | 176 | 45 | 5 | 5 | 164 | 1 | 176 | 6.31e-72 | 214 |
| Msa1445060 | MtrunA17_Chr2g0311601 | 75.221 | 113 | 28 | 0 | 3 | 115 | 6 | 118 | 7.91e-60 | 183 |
| Msa1445060 | MtrunA17_Chr4g0043421 | 55.689 | 167 | 63 | 1 | 3 | 169 | 8 | 163 | 3.45e-59 | 182 |
| Msa1445060 | MtrunA17_Chr7g0227511 | 52.349 | 149 | 67 | 1 | 8 | 152 | 9 | 157 | 7.23e-50 | 158 |
| Msa1445060 | MtrunA17_Chr4g0058651 | 51.899 | 158 | 59 | 1 | 8 | 148 | 9 | 166 | 1.26e-49 | 158 |
| Msa1445060 | MtrunA17_Chr3g0117121 | 70.192 | 104 | 31 | 0 | 8 | 111 | 8 | 111 | 2.50e-49 | 157 |
| Msa1445060 | MtrunA17_Chr4g0030001 | 63.158 | 114 | 41 | 1 | 9 | 121 | 23 | 136 | 1.58e-48 | 155 |
| Msa1445060 | MtrunA17_Chr5g0438091 | 59.664 | 119 | 48 | 0 | 5 | 123 | 34 | 152 | 6.90e-48 | 154 |
| Msa1445060 | MtrunA17_Chr6g0449641 | 56.557 | 122 | 53 | 0 | 8 | 129 | 7 | 128 | 9.35e-48 | 152 |
| Msa1445060 | MtrunA17_Chr1g0200201 | 51.592 | 157 | 51 | 4 | 11 | 148 | 73 | 223 | 4.58e-47 | 153 |
| Msa1445060 | MtrunA17_Chr3g0129071 | 68.932 | 103 | 32 | 0 | 9 | 111 | 46 | 148 | 7.12e-47 | 152 |
| Msa1445060 | MtrunA17_Chr6g0449651 | 48.630 | 146 | 64 | 1 | 8 | 153 | 65 | 199 | 3.82e-46 | 149 |
| Msa1445060 | MtrunA17_Chr3g0115431 | 59.829 | 117 | 46 | 1 | 8 | 124 | 7 | 122 | 3.48e-45 | 148 |
| Msa1445060 | MtrunA17_Chr5g0402611 | 58.400 | 125 | 51 | 1 | 8 | 131 | 6 | 130 | 3.72e-44 | 148 |
| Msa1445060 | MtrunA17_Chr3g0097221 | 61.165 | 103 | 40 | 0 | 8 | 110 | 5 | 107 | 3.93e-43 | 144 |
| Msa1445060 | MtrunA17_Chr3g0113891 | 66.000 | 100 | 34 | 0 | 8 | 107 | 12 | 111 | 6.03e-43 | 141 |
| Msa1445060 | MtrunA17_Chr5g0432451 | 67.961 | 103 | 33 | 0 | 9 | 111 | 42 | 144 | 1.38e-42 | 141 |
| Msa1445060 | MtrunA17_Chr5g0437401 | 62.376 | 101 | 38 | 0 | 7 | 107 | 8 | 108 | 5.89e-41 | 135 |
| Msa1445060 | MtrunA17_Chr8g0353981 | 62.617 | 107 | 40 | 0 | 8 | 114 | 5 | 111 | 7.16e-41 | 137 |
| Msa1445060 | MtrunA17_Chr7g0260971 | 56.604 | 106 | 45 | 1 | 6 | 110 | 10 | 115 | 1.00e-38 | 131 |
| Msa1445060 | MtrunA17_Chr8g0351721 | 53.659 | 123 | 53 | 2 | 7 | 125 | 15 | 137 | 2.96e-38 | 130 |
| Msa1445060 | MtrunA17_Chr5g0444351 | 51.376 | 109 | 53 | 0 | 11 | 119 | 6 | 114 | 4.76e-38 | 127 |
| Msa1445060 | MtrunA17_Chr1g0184281 | 59.406 | 101 | 40 | 1 | 10 | 109 | 15 | 115 | 5.01e-38 | 129 |
| Msa1445060 | MtrunA17_Chr8g0351701 | 56.863 | 102 | 43 | 1 | 10 | 110 | 23 | 124 | 1.55e-36 | 126 |
| Msa1445060 | MtrunA17_Chr7g0225111 | 49.550 | 111 | 56 | 0 | 9 | 119 | 4 | 114 | 2.78e-36 | 122 |
| Msa1445060 | MtrunA17_Chr7g0261031 | 47.857 | 140 | 61 | 4 | 6 | 134 | 4 | 142 | 1.96e-35 | 123 |
| Msa1445060 | MtrunA17_Chr7g0245871 | 56.863 | 102 | 43 | 1 | 10 | 110 | 27 | 128 | 5.76e-35 | 122 |
| Msa1445060 | MtrunA17_Chr5g0435641 | 42.857 | 147 | 71 | 3 | 6 | 144 | 3 | 144 | 4.25e-34 | 119 |
| Msa1445060 | MtrunA17_Chr1g0184271 | 56.701 | 97 | 39 | 2 | 10 | 104 | 12 | 107 | 2.92e-33 | 117 |
| Msa1445060 | MtrunA17_Chr6g0460951 | 49.038 | 104 | 52 | 1 | 9 | 111 | 39 | 142 | 2.61e-32 | 115 |
| Msa1445060 | MtrunA17_Chr7g0245861 | 58.065 | 93 | 36 | 2 | 7 | 96 | 9 | 101 | 5.48e-32 | 112 |
| Msa1445060 | MtrunA17_Chr8g0374601 | 47.525 | 101 | 53 | 0 | 10 | 110 | 26 | 126 | 2.04e-29 | 108 |
| Msa1445060 | MtrunA17_Chr8g0374591 | 44.554 | 101 | 56 | 0 | 10 | 110 | 8 | 108 | 1.00e-28 | 103 |
| Msa1445060 | MtrunA17_Chr8g0374581 | 47.573 | 103 | 53 | 1 | 10 | 111 | 8 | 110 | 6.18e-28 | 103 |
| Msa1445060 | MtrunA17_Chr6g0460941 | 50.000 | 88 | 43 | 1 | 10 | 96 | 7 | 94 | 5.12e-27 | 97.8 |
| Msa1445060 | MtrunA17_Chr6g0452691 | 39.474 | 114 | 68 | 1 | 5 | 117 | 4 | 117 | 3.32e-26 | 98.2 |
| Msa1445060 | MtrunA17_Chr4g0059901 | 43.333 | 120 | 67 | 1 | 4 | 122 | 4 | 123 | 5.26e-25 | 97.4 |
| Msa1445060 | MtrunA17_Chr6g0452671 | 41.935 | 93 | 54 | 0 | 11 | 103 | 12 | 104 | 2.93e-24 | 94.0 |
| Msa1445060 | MtrunA17_Chr6g0452661 | 43.373 | 83 | 46 | 1 | 8 | 89 | 7 | 89 | 3.04e-22 | 89.7 |
| Msa1445060 | MtrunA17_Chr2g0326051 | 59.701 | 67 | 27 | 0 | 55 | 121 | 5 | 71 | 4.99e-22 | 85.9 |
| Msa1445060 | MtrunA17_Chr4g0040831 | 34.400 | 125 | 79 | 1 | 6 | 127 | 11 | 135 | 7.84e-22 | 87.4 |
| Msa1445060 | MtrunA17_Chr2g0330201 | 35.238 | 105 | 68 | 0 | 6 | 110 | 15 | 119 | 4.99e-21 | 87.4 |
| Msa1445060 | MtrunA17_Chr8g0342351 | 31.159 | 138 | 95 | 0 | 11 | 148 | 13 | 150 | 5.05e-20 | 84.0 |
| Msa1445060 | MtrunA17_Chr4g0055441 | 38.947 | 95 | 53 | 2 | 11 | 100 | 3 | 97 | 6.55e-20 | 81.3 |
| Msa1445060 | MtrunA17_Chr2g0326041 | 64.583 | 48 | 17 | 0 | 9 | 56 | 32 | 79 | 4.95e-19 | 77.0 |
| Msa1445060 | MtrunA17_Chr4g0046201 | 37.931 | 87 | 54 | 0 | 11 | 97 | 7 | 93 | 2.68e-18 | 79.3 |
| Msa1445060 | MtrunA17_Chr5g0439111 | 38.554 | 83 | 50 | 1 | 8 | 89 | 7 | 89 | 4.00e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445060 | AT2G30130.1 | 78.195 | 133 | 25 | 1 | 7 | 135 | 5 | 137 | 5.83e-73 | 218 |
| Msa1445060 | AT1G31320.1 | 69.167 | 120 | 37 | 0 | 3 | 122 | 6 | 125 | 2.10e-52 | 165 |
| Msa1445060 | AT2G28500.1 | 50.943 | 159 | 75 | 2 | 9 | 165 | 54 | 211 | 5.55e-51 | 163 |
| Msa1445060 | AT1G07900.1 | 58.333 | 132 | 54 | 1 | 9 | 140 | 32 | 162 | 2.35e-50 | 160 |
| Msa1445060 | AT1G16530.1 | 69.159 | 107 | 32 | 1 | 9 | 114 | 13 | 119 | 1.23e-49 | 157 |
| Msa1445060 | AT5G63090.4 | 69.903 | 103 | 31 | 0 | 8 | 110 | 9 | 111 | 8.92e-49 | 156 |
| Msa1445060 | AT5G63090.3 | 69.903 | 103 | 31 | 0 | 8 | 110 | 9 | 111 | 8.92e-49 | 156 |
| Msa1445060 | AT5G63090.2 | 69.903 | 103 | 31 | 0 | 8 | 110 | 9 | 111 | 8.92e-49 | 156 |
| Msa1445060 | AT5G63090.1 | 69.903 | 103 | 31 | 0 | 8 | 110 | 9 | 111 | 8.92e-49 | 156 |
| Msa1445060 | AT3G27650.1 | 66.346 | 104 | 35 | 0 | 8 | 111 | 37 | 140 | 6.90e-48 | 153 |
| Msa1445060 | AT2G30340.1 | 59.664 | 119 | 48 | 0 | 9 | 127 | 51 | 169 | 3.17e-46 | 152 |
| Msa1445060 | AT2G30340.2 | 59.664 | 119 | 48 | 0 | 9 | 127 | 52 | 170 | 3.47e-46 | 152 |
| Msa1445060 | AT2G23660.2 | 56.410 | 117 | 50 | 1 | 8 | 124 | 3 | 118 | 9.26e-45 | 150 |
| Msa1445060 | AT2G23660.3 | 56.410 | 117 | 50 | 1 | 8 | 124 | 3 | 118 | 9.26e-45 | 150 |
| Msa1445060 | AT2G23660.1 | 56.410 | 117 | 50 | 1 | 8 | 124 | 3 | 118 | 9.26e-45 | 150 |
| Msa1445060 | AT2G40470.2 | 69.903 | 103 | 31 | 0 | 9 | 111 | 19 | 121 | 2.73e-44 | 145 |
| Msa1445060 | AT2G40470.1 | 69.903 | 103 | 31 | 0 | 9 | 111 | 44 | 146 | 3.84e-44 | 145 |
| Msa1445060 | AT5G66870.1 | 63.107 | 103 | 38 | 0 | 8 | 110 | 5 | 107 | 6.60e-43 | 145 |
| Msa1445060 | AT3G26660.1 | 58.182 | 110 | 46 | 0 | 11 | 120 | 6 | 115 | 1.53e-42 | 138 |
| Msa1445060 | AT3G26620.1 | 58.182 | 110 | 46 | 0 | 11 | 120 | 6 | 115 | 1.86e-42 | 138 |
| Msa1445060 | AT3G11090.1 | 57.759 | 116 | 48 | 1 | 8 | 122 | 9 | 124 | 1.12e-40 | 135 |
| Msa1445060 | AT1G65620.1 | 65.049 | 103 | 36 | 0 | 8 | 110 | 7 | 109 | 2.86e-40 | 135 |
| Msa1445060 | AT1G65620.4 | 65.049 | 103 | 36 | 0 | 8 | 110 | 7 | 109 | 2.86e-40 | 135 |
| Msa1445060 | AT1G65620.3 | 65.049 | 103 | 36 | 0 | 8 | 110 | 7 | 109 | 2.86e-40 | 135 |
| Msa1445060 | AT1G65620.5 | 65.049 | 103 | 36 | 0 | 8 | 110 | 7 | 109 | 2.86e-40 | 135 |
| Msa1445060 | AT1G65620.2 | 65.049 | 103 | 36 | 0 | 8 | 110 | 7 | 109 | 2.86e-40 | 135 |
| Msa1445060 | AT2G42430.1 | 56.604 | 106 | 45 | 1 | 6 | 110 | 11 | 116 | 3.53e-37 | 128 |
| Msa1445060 | AT4G00210.1 | 44.654 | 159 | 71 | 3 | 6 | 163 | 7 | 149 | 1.43e-36 | 126 |
| Msa1445060 | AT3G03760.1 | 54.808 | 104 | 46 | 1 | 9 | 111 | 50 | 153 | 1.77e-36 | 127 |
| Msa1445060 | AT2G45410.1 | 49.612 | 129 | 61 | 2 | 13 | 137 | 19 | 147 | 1.74e-35 | 122 |
| Msa1445060 | AT2G42440.1 | 47.143 | 140 | 64 | 4 | 6 | 143 | 3 | 134 | 2.34e-35 | 124 |
| Msa1445060 | AT2G31310.1 | 45.205 | 146 | 68 | 4 | 5 | 139 | 1 | 145 | 4.01e-35 | 121 |
| Msa1445060 | AT2G45420.1 | 53.846 | 104 | 47 | 1 | 13 | 115 | 40 | 143 | 1.88e-34 | 122 |
| Msa1445060 | AT4G00220.1 | 53.846 | 104 | 47 | 1 | 13 | 115 | 20 | 123 | 8.59e-34 | 119 |
| Msa1445060 | AT3G58190.1 | 48.031 | 127 | 58 | 3 | 10 | 134 | 11 | 131 | 1.80e-33 | 118 |
| Msa1445060 | AT5G06080.1 | 53.636 | 110 | 45 | 2 | 9 | 117 | 6 | 110 | 2.59e-32 | 114 |
| Msa1445060 | AT3G50510.1 | 46.602 | 103 | 55 | 0 | 8 | 110 | 10 | 112 | 2.49e-29 | 107 |
| Msa1445060 | AT3G50510.2 | 46.602 | 103 | 55 | 0 | 8 | 110 | 10 | 112 | 2.49e-29 | 107 |
| Msa1445060 | AT5G35900.1 | 41.748 | 103 | 60 | 0 | 11 | 113 | 6 | 108 | 1.63e-24 | 95.1 |
| Msa1445060 | AT1G72980.1 | 39.130 | 115 | 69 | 1 | 6 | 119 | 9 | 123 | 1.78e-23 | 92.4 |
| Msa1445060 | AT3G47870.1 | 35.514 | 107 | 69 | 0 | 4 | 110 | 30 | 136 | 1.31e-22 | 92.4 |
| Msa1445060 | AT3G13850.1 | 37.895 | 95 | 59 | 0 | 11 | 105 | 37 | 131 | 9.65e-21 | 86.3 |
| Msa1445060 | AT1G06280.1 | 45.946 | 74 | 40 | 0 | 11 | 84 | 25 | 98 | 1.05e-18 | 79.7 |
| Msa1445060 | AT2G19820.1 | 35.955 | 89 | 56 | 1 | 9 | 96 | 11 | 99 | 1.11e-15 | 69.7 |
| Msa1445060 | AT4G22700.1 | 36.634 | 101 | 62 | 2 | 11 | 110 | 6 | 105 | 1.27e-15 | 71.2 |
| Msa1445060 | AT5G15060.1 | 43.243 | 74 | 38 | 2 | 11 | 81 | 18 | 90 | 6.49e-14 | 65.5 |
| Msa1445060 | AT1G36000.1 | 28.261 | 92 | 66 | 0 | 5 | 96 | 4 | 95 | 5.82e-12 | 60.1 |
Find 19 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCTGCTCTTTGGTGAAT+TGG | 0.247897 | tig0030914:+41340 | None:intergenic |
| CTCACTCAATACCTTAATTA+TGG | 0.252400 | tig0030914:-41100 | Msa1445060:CDS |
| TGTGAACTATGGCAAACTTT+TGG | 0.274301 | tig0030914:+42197 | None:intergenic |
| CATCTGCTCTTTGGTGAATT+GGG | 0.326240 | tig0030914:+41341 | None:intergenic |
| TAGAAGAAGAACCATAATTA+AGG | 0.338211 | tig0030914:+41089 | None:intergenic |
| TGTTCACTGCATCTGCTCTT+TGG | 0.348086 | tig0030914:+41332 | None:intergenic |
| TAATATGTATGGACATGATA+TGG | 0.378652 | tig0030914:-41032 | Msa1445060:CDS |
| GCTGCAACACAGCCATAAAC+TGG | 0.381237 | tig0030914:+41274 | None:intergenic |
| AGAGTGAGGGATCCAGTTTA+TGG | 0.403662 | tig0030914:-41286 | Msa1445060:CDS |
| TTCTGATCTTGATTGATTTG+TGG | 0.407823 | tig0030914:+41145 | None:intergenic |
| GGTTCATGAGAAGGAAAATA+AGG | 0.413213 | tig0030914:+42220 | None:intergenic |
| CAATGTTAGCAAAATGTTGC+AGG | 0.415314 | tig0030914:-42158 | Msa1445060:intron |
| CTTAAGAGAGATAATATGTA+TGG | 0.442326 | tig0030914:-41043 | Msa1445060:CDS |
| TCTTGATTGATTTGTGGTGT+TGG | 0.466265 | tig0030914:+41151 | None:intergenic |
| AAAGTTTGCCATAGTTCACA+AGG | 0.602163 | tig0030914:-42194 | Msa1445060:CDS |
| AGAAGGAAAATAAGGAGCAA+AGG | 0.607624 | tig0030914:+42228 | None:intergenic |
| ATGAAGCAAATGCAAGAGTG+AGG | 0.619290 | tig0030914:-41300 | Msa1445060:CDS |
| AGAAGCTTGCATGAAGCACA+TGG | 0.628381 | tig0030914:+42277 | None:intergenic |
| TGAAGCAAATGCAAGAGTGA+GGG | 0.632506 | tig0030914:-41299 | Msa1445060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTTGTGAATAAAATATT+TGG | - | tig0030914:41361-41380 | Msa1445060:intron | 15.0% |
| !! | AGTTTGTGAATAAAATATTT+GGG | - | tig0030914:41362-41381 | Msa1445060:intron | 15.0% |
| !!! | TTTTTTATGTTTCTTACTTT+AGG | + | tig0030914:41462-41481 | None:intergenic | 15.0% |
| !! | TAATAGTAAACAACTAAAAA+AGG | + | tig0030914:41520-41539 | None:intergenic | 15.0% |
| !! | AAAAATACTAATCATTAGAA+AGG | + | tig0030914:41673-41692 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTTGTTTGAATC+AGG | - | tig0030914:41960-41979 | Msa1445060:intron | 15.0% |
| !!! | TAGTTTGTGAATAAAATATT+TGG | - | tig0030914:41361-41380 | Msa1445060:intron | 15.0% |
| !! | AGTTTGTGAATAAAATATTT+GGG | - | tig0030914:41362-41381 | Msa1445060:intron | 15.0% |
| !!! | TTTTTTATGTTTCTTACTTT+AGG | + | tig0030914:41462-41481 | None:intergenic | 15.0% |
| !! | TAATAGTAAACAACTAAAAA+AGG | + | tig0030914:41520-41539 | None:intergenic | 15.0% |
| !! | AAAAATACTAATCATTAGAA+AGG | + | tig0030914:41673-41692 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTTGTTTGAATC+AGG | - | tig0030914:41960-41979 | Msa1445060:intron | 15.0% |
| !! | AAACACTTAAAAAAAGTAAG+AGG | + | tig0030914:41198-41217 | None:intergenic | 20.0% |
| !!! | TTACTTTCTTTGATGATTAA+AGG | - | tig0030914:41221-41240 | Msa1445060:CDS | 20.0% |
| !!! | TACTTTCTTTGATGATTAAA+GGG | - | tig0030914:41222-41241 | Msa1445060:CDS | 20.0% |
| !!! | TGTACTTATGTTTTTATTCA+AGG | - | tig0030914:41320-41339 | Msa1445060:CDS | 20.0% |
| !! | TGTTTACTATTATAGTTATG+AGG | - | tig0030914:41528-41547 | Msa1445060:intron | 20.0% |
| !! | TAAGTGTTTATTATTGTTCA+AGG | - | tig0030914:41715-41734 | Msa1445060:intron | 20.0% |
| !!! | TTTTTTTATGCGGAAAATTA+GGG | + | tig0030914:41793-41812 | None:intergenic | 20.0% |
| !!! | TTTTTTTTATGCGGAAAATT+AGG | + | tig0030914:41794-41813 | None:intergenic | 20.0% |
| !! | AAACACTTAAAAAAAGTAAG+AGG | + | tig0030914:41198-41217 | None:intergenic | 20.0% |
| !!! | TTACTTTCTTTGATGATTAA+AGG | - | tig0030914:41221-41240 | Msa1445060:CDS | 20.0% |
| !!! | TACTTTCTTTGATGATTAAA+GGG | - | tig0030914:41222-41241 | Msa1445060:CDS | 20.0% |
| !!! | TGTACTTATGTTTTTATTCA+AGG | - | tig0030914:41320-41339 | Msa1445060:CDS | 20.0% |
| !! | TGTTTACTATTATAGTTATG+AGG | - | tig0030914:41528-41547 | Msa1445060:intron | 20.0% |
| !! | TAAGTGTTTATTATTGTTCA+AGG | - | tig0030914:41715-41734 | Msa1445060:intron | 20.0% |
| !!! | TTTTTTTATGCGGAAAATTA+GGG | + | tig0030914:41793-41812 | None:intergenic | 20.0% |
| !!! | TTTTTTTTATGCGGAAAATT+AGG | + | tig0030914:41794-41813 | None:intergenic | 20.0% |
| ! | ACAAAAAATCTCTACATTCT+TGG | + | tig0030914:41408-41427 | None:intergenic | 25.0% |
| !!! | TTCTTACTTTAGGATGTTTT+AGG | + | tig0030914:41452-41471 | None:intergenic | 25.0% |
| ! | ACAAAAATCACAATCAAATG+TGG | + | tig0030914:41605-41624 | None:intergenic | 25.0% |
| !!! | ATTTTTGTTTTGCGATGTTA+AGG | - | tig0030914:41617-41636 | Msa1445060:intron | 25.0% |
| ! | TAGAAGAAGAACCATAATTA+AGG | + | tig0030914:42242-42261 | None:intergenic | 25.0% |
| ! | CTTAAGAGAGATAATATGTA+TGG | - | tig0030914:42285-42304 | Msa1445060:CDS | 25.0% |
| ! | TAATATGTATGGACATGATA+TGG | - | tig0030914:42296-42315 | Msa1445060:CDS | 25.0% |
| ! | ACAAAAAATCTCTACATTCT+TGG | + | tig0030914:41408-41427 | None:intergenic | 25.0% |
| !!! | TTCTTACTTTAGGATGTTTT+AGG | + | tig0030914:41452-41471 | None:intergenic | 25.0% |
| ! | ACAAAAATCACAATCAAATG+TGG | + | tig0030914:41605-41624 | None:intergenic | 25.0% |
| !!! | ATTTTTGTTTTGCGATGTTA+AGG | - | tig0030914:41617-41636 | Msa1445060:intron | 25.0% |
| ! | TAGAAGAAGAACCATAATTA+AGG | + | tig0030914:42242-42261 | None:intergenic | 25.0% |
| ! | CTTAAGAGAGATAATATGTA+TGG | - | tig0030914:42285-42304 | Msa1445060:CDS | 25.0% |
| ! | TAATATGTATGGACATGATA+TGG | - | tig0030914:42296-42315 | Msa1445060:CDS | 25.0% |
| ATTATAGTTATGAGGAGTTG+AGG | - | tig0030914:41536-41555 | Msa1445060:intron | 30.0% | |
| CTCTATTGTTGAAGACATAT+TGG | - | tig0030914:41829-41848 | Msa1445060:intron | 30.0% | |
| AAGAACACAACAATTGATCA+CGG | + | tig0030914:41862-41881 | None:intergenic | 30.0% | |
| !! | GTAGAATCAGACTTGTTATT+CGG | - | tig0030914:41900-41919 | Msa1445060:intron | 30.0% |
| !! | TTCTGATCTTGATTGATTTG+TGG | + | tig0030914:42186-42205 | None:intergenic | 30.0% |
| CTCACTCAATACCTTAATTA+TGG | - | tig0030914:42228-42247 | Msa1445060:CDS | 30.0% | |
| ATTATAGTTATGAGGAGTTG+AGG | - | tig0030914:41536-41555 | Msa1445060:intron | 30.0% | |
| CTCTATTGTTGAAGACATAT+TGG | - | tig0030914:41829-41848 | Msa1445060:intron | 30.0% | |
| AAGAACACAACAATTGATCA+CGG | + | tig0030914:41862-41881 | None:intergenic | 30.0% | |
| !! | GTAGAATCAGACTTGTTATT+CGG | - | tig0030914:41900-41919 | Msa1445060:intron | 30.0% |
| !! | TTCTGATCTTGATTGATTTG+TGG | + | tig0030914:42186-42205 | None:intergenic | 30.0% |
| CTCACTCAATACCTTAATTA+TGG | - | tig0030914:42228-42247 | Msa1445060:CDS | 30.0% | |
| AGAAGGAAAATAAGGAGCAA+AGG | + | tig0030914:41103-41122 | None:intergenic | 35.0% | |
| GGTTCATGAGAAGGAAAATA+AGG | + | tig0030914:41111-41130 | None:intergenic | 35.0% | |
| ! | TGAACTATGGCAAACTTTTG+GGG | + | tig0030914:41132-41151 | None:intergenic | 35.0% |
| ! | GTGAACTATGGCAAACTTTT+GGG | + | tig0030914:41133-41152 | None:intergenic | 35.0% |
| ! | TGTGAACTATGGCAAACTTT+TGG | + | tig0030914:41134-41153 | None:intergenic | 35.0% |
| AAAGTTTGCCATAGTTCACA+AGG | - | tig0030914:41134-41153 | Msa1445060:CDS | 35.0% | |
| ACCAAAAACCTTGTGAACTA+TGG | + | tig0030914:41145-41164 | None:intergenic | 35.0% | |
| CAATGTTAGCAAAATGTTGC+AGG | - | tig0030914:41170-41189 | Msa1445060:CDS | 35.0% | |
| TTATTCAAGGTTCACCTTGT+AGG | - | tig0030914:41333-41352 | Msa1445060:CDS | 35.0% | |
| CACAAACTATTCAACCTACA+AGG | + | tig0030914:41350-41369 | None:intergenic | 35.0% | |
| !! | TCTTGATTGATTTGTGGTGT+TGG | + | tig0030914:42180-42199 | None:intergenic | 35.0% |
| AGAAGGAAAATAAGGAGCAA+AGG | + | tig0030914:41103-41122 | None:intergenic | 35.0% | |
| GGTTCATGAGAAGGAAAATA+AGG | + | tig0030914:41111-41130 | None:intergenic | 35.0% | |
| ! | TGAACTATGGCAAACTTTTG+GGG | + | tig0030914:41132-41151 | None:intergenic | 35.0% |
| ! | GTGAACTATGGCAAACTTTT+GGG | + | tig0030914:41133-41152 | None:intergenic | 35.0% |
| ! | TGTGAACTATGGCAAACTTT+TGG | + | tig0030914:41134-41153 | None:intergenic | 35.0% |
| AAAGTTTGCCATAGTTCACA+AGG | - | tig0030914:41134-41153 | Msa1445060:CDS | 35.0% | |
| ACCAAAAACCTTGTGAACTA+TGG | + | tig0030914:41145-41164 | None:intergenic | 35.0% | |
| CAATGTTAGCAAAATGTTGC+AGG | - | tig0030914:41170-41189 | Msa1445060:CDS | 35.0% | |
| TTATTCAAGGTTCACCTTGT+AGG | - | tig0030914:41333-41352 | Msa1445060:CDS | 35.0% | |
| CACAAACTATTCAACCTACA+AGG | + | tig0030914:41350-41369 | None:intergenic | 35.0% | |
| !! | TCTTGATTGATTTGTGGTGT+TGG | + | tig0030914:42180-42199 | None:intergenic | 35.0% |
| !!! | AACTTTTGGGGTTCATGAGA+AGG | + | tig0030914:41120-41139 | None:intergenic | 40.0% |
| ! | GCCATAGTTCACAAGGTTTT+TGG | - | tig0030914:41141-41160 | Msa1445060:CDS | 40.0% |
| ATAGTTATGAGGAGTTGAGG+AGG | - | tig0030914:41539-41558 | Msa1445060:intron | 40.0% | |
| GTTAAGGATTGCAATACGAG+AGG | - | tig0030914:41633-41652 | Msa1445060:intron | 40.0% | |
| ! | GGGTTAGAGAGTACAAAACT+TGG | + | tig0030914:41773-41792 | None:intergenic | 40.0% |
| AACACAACAATTGATCACGG+AGG | + | tig0030914:41859-41878 | None:intergenic | 40.0% | |
| CATCTGCTCTTTGGTGAATT+GGG | + | tig0030914:41990-42009 | None:intergenic | 40.0% | |
| ATGAAGCAAATGCAAGAGTG+AGG | - | tig0030914:42028-42047 | Msa1445060:intron | 40.0% | |
| TGAAGCAAATGCAAGAGTGA+GGG | - | tig0030914:42029-42048 | Msa1445060:intron | 40.0% | |
| ! | TCACTTGCTCATTTTGCATC+TGG | + | tig0030914:42155-42174 | None:intergenic | 40.0% |
| !!! | AACTTTTGGGGTTCATGAGA+AGG | + | tig0030914:41120-41139 | None:intergenic | 40.0% |
| ! | GCCATAGTTCACAAGGTTTT+TGG | - | tig0030914:41141-41160 | Msa1445060:CDS | 40.0% |
| ATAGTTATGAGGAGTTGAGG+AGG | - | tig0030914:41539-41558 | Msa1445060:intron | 40.0% | |
| GTTAAGGATTGCAATACGAG+AGG | - | tig0030914:41633-41652 | Msa1445060:intron | 40.0% | |
| ! | GGGTTAGAGAGTACAAAACT+TGG | + | tig0030914:41773-41792 | None:intergenic | 40.0% |
| AACACAACAATTGATCACGG+AGG | + | tig0030914:41859-41878 | None:intergenic | 40.0% | |
| CATCTGCTCTTTGGTGAATT+GGG | + | tig0030914:41990-42009 | None:intergenic | 40.0% | |
| ATGAAGCAAATGCAAGAGTG+AGG | - | tig0030914:42028-42047 | Msa1445060:intron | 40.0% | |
| TGAAGCAAATGCAAGAGTGA+GGG | - | tig0030914:42029-42048 | Msa1445060:intron | 40.0% | |
| ! | TCACTTGCTCATTTTGCATC+TGG | + | tig0030914:42155-42174 | None:intergenic | 40.0% |
| AGAAGCTTGCATGAAGCACA+TGG | + | tig0030914:41054-41073 | None:intergenic | 45.0% | |
| TTGCGACACAATCACGATTG+AGG | - | tig0030914:41570-41589 | Msa1445060:intron | 45.0% | |
| CAACAATTGATCACGGAGGT+GGG | + | tig0030914:41855-41874 | None:intergenic | 45.0% | |
| ACAACAATTGATCACGGAGG+TGG | + | tig0030914:41856-41875 | None:intergenic | 45.0% | |
| GCATCTGCTCTTTGGTGAAT+TGG | + | tig0030914:41991-42010 | None:intergenic | 45.0% | |
| TGTTCACTGCATCTGCTCTT+TGG | + | tig0030914:41999-42018 | None:intergenic | 45.0% | |
| AGAGTGAGGGATCCAGTTTA+TGG | - | tig0030914:42042-42061 | Msa1445060:intron | 45.0% | |
| AGAAGCTTGCATGAAGCACA+TGG | + | tig0030914:41054-41073 | None:intergenic | 45.0% | |
| TTGCGACACAATCACGATTG+AGG | - | tig0030914:41570-41589 | Msa1445060:intron | 45.0% | |
| CAACAATTGATCACGGAGGT+GGG | + | tig0030914:41855-41874 | None:intergenic | 45.0% | |
| ACAACAATTGATCACGGAGG+TGG | + | tig0030914:41856-41875 | None:intergenic | 45.0% | |
| GCATCTGCTCTTTGGTGAAT+TGG | + | tig0030914:41991-42010 | None:intergenic | 45.0% | |
| TGTTCACTGCATCTGCTCTT+TGG | + | tig0030914:41999-42018 | None:intergenic | 45.0% | |
| AGAGTGAGGGATCCAGTTTA+TGG | - | tig0030914:42042-42061 | Msa1445060:intron | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTATG+CGG | + | tig0030914:41803-41822 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTATG+CGG | + | tig0030914:41803-41822 | None:intergenic | 5.0% |
| GCTGCAACACAGCCATAAAC+TGG | + | tig0030914:42057-42076 | None:intergenic | 50.0% | |
| GCTGCAACACAGCCATAAAC+TGG | + | tig0030914:42057-42076 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030914 | gene | 41024 | 42326 | 41024 | ID=Msa1445060;Name=Msa1445060 |
| tig0030914 | mRNA | 41024 | 42326 | 41024 | ID=Msa1445060-mRNA-1;Parent=Msa1445060;Name=Msa1445060-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|170 |
| tig0030914 | exon | 42159 | 42326 | 42159 | ID=Msa1445060-mRNA-1:exon:14802;Parent=Msa1445060-mRNA-1 |
| tig0030914 | exon | 41024 | 41368 | 41024 | ID=Msa1445060-mRNA-1:exon:14801;Parent=Msa1445060-mRNA-1 |
| tig0030914 | CDS | 42159 | 42326 | 42159 | ID=Msa1445060-mRNA-1:cds;Parent=Msa1445060-mRNA-1 |
| tig0030914 | CDS | 41024 | 41368 | 41024 | ID=Msa1445060-mRNA-1:cds;Parent=Msa1445060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
