Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445330 | A0A072TSZ5 | 87.968 | 374 | 45 | 0 | 1 | 374 | 17 | 390 | 0.0 | 638 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1445330 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445330 | MtrunA17_Chr8g0377801 | 87.968 | 374 | 45 | 0 | 1 | 374 | 17 | 390 | 0.0 | 638 |
| Msa1445330 | MtrunA17_Chr8g0377781 | 73.280 | 378 | 98 | 1 | 1 | 375 | 1 | 378 | 0.0 | 534 |
| Msa1445330 | MtrunA17_Chr2g0296191 | 27.394 | 376 | 262 | 4 | 1 | 369 | 137 | 508 | 5.79e-38 | 145 |
| Msa1445330 | MtrunA17_Chr2g0296191 | 29.859 | 355 | 242 | 4 | 19 | 368 | 642 | 994 | 4.13e-35 | 137 |
| Msa1445330 | MtrunA17_Chr2g0296711 | 31.000 | 300 | 203 | 3 | 71 | 368 | 86 | 383 | 1.63e-37 | 140 |
| Msa1445330 | MtrunA17_Chr4g0067141 | 29.855 | 345 | 234 | 6 | 28 | 371 | 35 | 372 | 4.50e-37 | 137 |
| Msa1445330 | MtrunA17_Chr2g0296721 | 29.470 | 302 | 208 | 3 | 69 | 368 | 81 | 379 | 8.53e-36 | 135 |
| Msa1445330 | MtrunA17_Chr2g0296221 | 29.494 | 356 | 244 | 4 | 19 | 369 | 59 | 412 | 1.16e-35 | 135 |
| Msa1445330 | MtrunA17_Chr2g0295761 | 28.614 | 339 | 235 | 6 | 32 | 368 | 53 | 386 | 2.94e-35 | 133 |
| Msa1445330 | MtrunA17_Chr2g0295731 | 28.617 | 311 | 199 | 6 | 69 | 369 | 78 | 375 | 5.37e-35 | 132 |
| Msa1445330 | MtrunA17_Chr2g0315731 | 29.221 | 308 | 202 | 4 | 69 | 368 | 101 | 400 | 7.89e-35 | 132 |
| Msa1445330 | MtrunA17_Chr2g0296171 | 30.492 | 305 | 206 | 3 | 69 | 369 | 91 | 393 | 1.31e-34 | 132 |
| Msa1445330 | MtrunA17_Chr2g0296151 | 30.380 | 316 | 211 | 4 | 59 | 369 | 57 | 368 | 1.77e-34 | 130 |
| Msa1445330 | MtrunA17_Chr2g0296741 | 28.289 | 304 | 210 | 4 | 69 | 368 | 101 | 400 | 2.80e-34 | 131 |
| Msa1445330 | MtrunA17_Chr2g0286191 | 28.190 | 337 | 236 | 5 | 37 | 372 | 29 | 360 | 4.44e-34 | 129 |
| Msa1445330 | MtrunA17_Chr4g0001831 | 26.781 | 351 | 250 | 5 | 23 | 369 | 21 | 368 | 1.92e-33 | 127 |
| Msa1445330 | MtrunA17_Chr2g0296121 | 27.507 | 349 | 243 | 4 | 26 | 370 | 113 | 455 | 1.03e-32 | 127 |
| Msa1445330 | MtrunA17_Chr2g0296291 | 28.060 | 335 | 202 | 3 | 72 | 369 | 64 | 396 | 2.13e-32 | 125 |
| Msa1445330 | MtrunA17_Chr2g0296251 | 27.434 | 339 | 205 | 6 | 69 | 369 | 61 | 396 | 5.16e-32 | 124 |
| Msa1445330 | MtrunA17_Chr2g0296231 | 29.139 | 302 | 208 | 4 | 69 | 368 | 80 | 377 | 1.24e-30 | 120 |
| Msa1445330 | MtrunA17_Chr2g0296111 | 27.653 | 311 | 205 | 4 | 71 | 368 | 72 | 375 | 1.91e-30 | 120 |
| Msa1445330 | MtrunA17_Chr4g0067121 | 25.816 | 337 | 245 | 4 | 34 | 369 | 46 | 378 | 8.56e-30 | 118 |
| Msa1445330 | MtrunA17_Chr4g0067671 | 25.387 | 323 | 237 | 3 | 32 | 354 | 37 | 355 | 2.76e-29 | 116 |
| Msa1445330 | MtrunA17_Chr2g0296301 | 24.277 | 346 | 249 | 5 | 27 | 368 | 27 | 363 | 3.42e-29 | 116 |
| Msa1445330 | MtrunA17_Chr2g0295741 | 26.168 | 321 | 218 | 5 | 59 | 369 | 63 | 374 | 2.67e-27 | 111 |
| Msa1445330 | MtrunA17_Chr2g0296181 | 27.528 | 356 | 217 | 7 | 16 | 369 | 39 | 355 | 6.61e-24 | 102 |
| Msa1445330 | MtrunA17_Chr2g0296211 | 30.519 | 154 | 107 | 0 | 216 | 369 | 203 | 356 | 2.82e-17 | 82.4 |
| Msa1445330 | MtrunA17_Chr2g0296551 | 32.877 | 146 | 98 | 0 | 224 | 369 | 37 | 182 | 7.73e-17 | 78.2 |
| Msa1445330 | MtrunA17_Chr2g0296701 | 29.452 | 146 | 103 | 0 | 224 | 369 | 9 | 154 | 1.12e-15 | 74.3 |
| Msa1445330 | MtrunA17_Chr2g0296751 | 30.894 | 123 | 85 | 0 | 243 | 365 | 1 | 123 | 1.28e-13 | 68.6 |
| Msa1445330 | MtrunA17_Chr2g0296131 | 27.632 | 152 | 110 | 0 | 218 | 369 | 9 | 160 | 6.41e-13 | 66.6 |
| Msa1445330 | MtrunA17_Chr2g0286221 | 27.329 | 161 | 113 | 3 | 213 | 372 | 13 | 170 | 3.30e-12 | 64.7 |
| Msa1445330 | MtrunA17_Chr2g0295711 | 34.579 | 107 | 66 | 1 | 59 | 161 | 63 | 169 | 1.45e-11 | 63.5 |
| Msa1445330 | MtrunA17_Chr2g0296161 | 26.974 | 152 | 111 | 0 | 218 | 369 | 5 | 156 | 1.73e-11 | 62.4 |
| Msa1445330 | MtrunA17_Chr2g0294671 | 24.444 | 270 | 180 | 8 | 64 | 320 | 201 | 459 | 8.61e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445330 | AT5G64950.1 | 39.045 | 356 | 201 | 6 | 24 | 369 | 27 | 376 | 2.87e-74 | 236 |
| Msa1445330 | AT5G07900.1 | 27.246 | 345 | 245 | 4 | 30 | 370 | 59 | 401 | 8.03e-43 | 154 |
| Msa1445330 | AT1G21150.3 | 26.912 | 353 | 242 | 7 | 27 | 372 | 11 | 354 | 2.89e-31 | 122 |
| Msa1445330 | AT1G21150.1 | 27.914 | 326 | 219 | 7 | 54 | 372 | 74 | 390 | 1.20e-30 | 120 |
| Msa1445330 | AT1G21150.2 | 26.837 | 313 | 218 | 5 | 67 | 372 | 146 | 454 | 4.28e-30 | 120 |
| Msa1445330 | AT1G62120.1 | 25.686 | 401 | 249 | 7 | 14 | 373 | 34 | 426 | 8.93e-27 | 110 |
| Msa1445330 | AT1G62010.1 | 26.000 | 350 | 217 | 6 | 62 | 373 | 59 | 404 | 3.30e-24 | 103 |
| Msa1445330 | AT1G61970.2 | 25.269 | 372 | 230 | 7 | 22 | 354 | 37 | 399 | 4.04e-24 | 103 |
| Msa1445330 | AT1G61970.7 | 25.269 | 372 | 230 | 7 | 22 | 354 | 37 | 399 | 4.04e-24 | 103 |
| Msa1445330 | AT1G61970.6 | 25.269 | 372 | 230 | 7 | 22 | 354 | 37 | 399 | 4.04e-24 | 103 |
| Msa1445330 | AT1G61970.3 | 25.269 | 372 | 230 | 7 | 22 | 354 | 37 | 399 | 4.04e-24 | 103 |
| Msa1445330 | AT1G61970.5 | 25.269 | 372 | 230 | 7 | 22 | 354 | 37 | 399 | 4.04e-24 | 103 |
| Msa1445330 | AT1G61970.4 | 25.269 | 372 | 230 | 7 | 22 | 354 | 37 | 399 | 4.04e-24 | 103 |
| Msa1445330 | AT1G61970.1 | 25.269 | 372 | 230 | 7 | 22 | 354 | 37 | 399 | 4.04e-24 | 103 |
| Msa1445330 | AT1G61980.3 | 24.791 | 359 | 221 | 7 | 40 | 359 | 56 | 404 | 2.81e-22 | 97.8 |
| Msa1445330 | AT1G61980.2 | 24.791 | 359 | 221 | 7 | 40 | 359 | 56 | 404 | 2.81e-22 | 97.8 |
| Msa1445330 | AT1G61980.1 | 24.791 | 359 | 221 | 7 | 40 | 359 | 56 | 404 | 2.81e-22 | 97.8 |
| Msa1445330 | AT1G61990.2 | 24.274 | 379 | 225 | 8 | 33 | 368 | 49 | 408 | 3.11e-22 | 97.8 |
| Msa1445330 | AT1G61990.1 | 24.274 | 379 | 225 | 8 | 33 | 368 | 49 | 408 | 3.11e-22 | 97.8 |
| Msa1445330 | AT3G46950.1 | 28.897 | 263 | 174 | 5 | 23 | 283 | 37 | 288 | 2.24e-18 | 86.7 |
| Msa1445330 | AT1G61960.1 | 26.275 | 255 | 174 | 5 | 33 | 283 | 49 | 293 | 5.56e-16 | 79.7 |
| Msa1445330 | AT1G61960.1 | 28.571 | 133 | 92 | 1 | 242 | 371 | 322 | 454 | 3.28e-11 | 65.1 |
| Msa1445330 | AT1G62085.1 | 25.623 | 281 | 196 | 6 | 6 | 283 | 27 | 297 | 3.13e-14 | 74.3 |
| Msa1445330 | AT1G62085.2 | 25.623 | 281 | 196 | 6 | 6 | 283 | 27 | 297 | 3.13e-14 | 74.3 |
| Msa1445330 | AT1G62150.1 | 25.197 | 254 | 179 | 4 | 33 | 283 | 55 | 300 | 6.50e-14 | 73.2 |
| Msa1445330 | AT1G62110.1 | 25.763 | 295 | 200 | 7 | 4 | 288 | 14 | 299 | 8.58e-14 | 72.8 |
| Msa1445330 | AT1G62110.1 | 24.545 | 220 | 123 | 5 | 142 | 354 | 256 | 439 | 1.22e-11 | 66.2 |
| Msa1445330 | AT5G23930.1 | 26.374 | 273 | 181 | 5 | 19 | 283 | 30 | 290 | 3.63e-12 | 67.8 |
Find 58 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTCAGATTTATGTAATT+TGG | 0.146035 | tig0031043:-12644 | Msa1445330:intergenic |
| TCTGATACCCTAAGCAAATT+TGG | 0.167535 | tig0031043:-13312 | Msa1445330:intergenic |
| TATGTATCTAAACTTGTTTC+AGG | 0.182146 | tig0031043:+12670 | Msa1445330:CDS |
| TGGTTTGAAGATTGGCTAAT+TGG | 0.258374 | tig0031043:-12583 | Msa1445330:intergenic |
| GTAATTTGGAATTGGAATTA+AGG | 0.258620 | tig0031043:-12630 | Msa1445330:intergenic |
| GGTATCAGAGAAGAAATTAA+AGG | 0.286233 | tig0031043:+13326 | Msa1445330:CDS |
| TTGTGGCATTGTTGGGAATC+AGG | 0.291087 | tig0031043:+13059 | Msa1445330:CDS |
| AGTTGAACTCTTTCAACAAT+TGG | 0.295692 | tig0031043:+12831 | Msa1445330:CDS |
| TAAACAGAAAAGTGGTTTCT+TGG | 0.299414 | tig0031043:-12603 | Msa1445330:intergenic |
| GGTTTGAAGATTGGCTAATT+GGG | 0.301810 | tig0031043:-12582 | Msa1445330:intergenic |
| GAGCTTGCAAATGTTCAAAA+AGG | 0.301950 | tig0031043:+13287 | Msa1445330:CDS |
| AAACTAGCAATCAAAATGTT+TGG | 0.309959 | tig0031043:-12895 | Msa1445330:intergenic |
| AGATTTATGTAATTTGGAAT+TGG | 0.324733 | tig0031043:-12638 | Msa1445330:intergenic |
| TGTTGAAAGAGTTCAACTTT+AGG | 0.350113 | tig0031043:-12826 | Msa1445330:intergenic |
| AAAAGGTTCCAAATTTGCTT+AGG | 0.354562 | tig0031043:+13304 | Msa1445330:CDS |
| CAAAGTCAGCATTGGTAAAT+CGG | 0.377421 | tig0031043:+13385 | Msa1445330:CDS |
| GTTGAACTCTTTCAACAATT+GGG | 0.392199 | tig0031043:+12832 | Msa1445330:CDS |
| TGGTTTCTTGGTTTGAAGAT+TGG | 0.394390 | tig0031043:-12591 | Msa1445330:intergenic |
| CGATTTACCAATGCTGACTT+TGG | 0.400007 | tig0031043:-13384 | Msa1445330:intergenic |
| TAAAGAGTTGTGGCATTGTT+GGG | 0.409760 | tig0031043:+13052 | Msa1445330:CDS |
| CCCTCAAAATTCAAGAATGT+TGG | 0.411674 | tig0031043:+13173 | Msa1445330:CDS |
| AACAAGTTTAGATACATAGA+TGG | 0.430695 | tig0031043:-12665 | Msa1445330:intergenic |
| CAATGTTGGCAACAAATAAT+CGG | 0.430979 | tig0031043:-13023 | Msa1445330:intergenic |
| ATGCTGTACATCAAAATCAT+AGG | 0.431885 | tig0031043:-13408 | Msa1445330:intergenic |
| AAAGGTTCCAAATTTGCTTA+GGG | 0.440166 | tig0031043:+13305 | Msa1445330:CDS |
| TTAAAGAGTTGTGGCATTGT+TGG | 0.450111 | tig0031043:+13051 | Msa1445330:CDS |
| CATAACATGTAAAGAAAGCT+TGG | 0.474580 | tig0031043:-13501 | Msa1445330:intergenic |
| ACTCTTTAAGTAAGCAATGT+TGG | 0.476443 | tig0031043:-13037 | Msa1445330:intergenic |
| TGTTTCCCAAGCTGAAGACT+TGG | 0.484159 | tig0031043:+13146 | Msa1445330:CDS |
| GAAACCCAAGTCTTCAGCTT+GGG | 0.496850 | tig0031043:-13151 | Msa1445330:intergenic |
| GGCATTATTGATAGCTTACA+AGG | 0.500193 | tig0031043:+13581 | Msa1445330:CDS |
| AAGGAGGTTAAACAGAAAAG+TGG | 0.503037 | tig0031043:-12611 | Msa1445330:intergenic |
| TTGAGTTCTCTGACGAATGA+TGG | 0.508324 | tig0031043:-12770 | Msa1445330:intergenic |
| ATCACAAAATCTATGTAAGA+AGG | 0.510006 | tig0031043:+13476 | Msa1445330:CDS |
| TCAGAGAAGAAATTAAAGGT+TGG | 0.514181 | tig0031043:+13330 | Msa1445330:CDS |
| AAGTTATTAAGAAGTTTGTT+CGG | 0.519975 | tig0031043:+12944 | Msa1445330:CDS |
| AATTGAGTTCTTCTTACATA+CGG | 0.524691 | tig0031043:+13353 | Msa1445330:CDS |
| TGCTAGTTTGAACAAAACAT+TGG | 0.530513 | tig0031043:+12909 | Msa1445330:CDS |
| ATTGCTTACTTAAAGAGTTG+TGG | 0.532339 | tig0031043:+13042 | Msa1445330:CDS |
| GTTTCCCAAGCTGAAGACTT+GGG | 0.532974 | tig0031043:+13147 | Msa1445330:CDS |
| AAGAGAGCGTAACAACTTGA+GGG | 0.540502 | tig0031043:-12503 | Msa1445330:intergenic |
| CGAAGTGAGTTAGAACTGAA+AGG | 0.549827 | tig0031043:-12526 | Msa1445330:intergenic |
| CAACAAATAATCGGTAATGC+GGG | 0.554341 | tig0031043:-13014 | Msa1445330:intergenic |
| TTCTTAATAACTTCCACAGA+GGG | 0.556624 | tig0031043:-12934 | Msa1445330:intergenic |
| ATTTGGAATTGGAATTAAGG+AGG | 0.557007 | tig0031043:-12627 | Msa1445330:intergenic |
| GAAGAGAGCGTAACAACTTG+AGG | 0.557961 | tig0031043:-12504 | Msa1445330:intergenic |
| TTACATGTTATGTTTATCTG+AGG | 0.564436 | tig0031043:+13512 | Msa1445330:CDS |
| GTTTGAAGATTGGCTAATTG+GGG | 0.570711 | tig0031043:-12581 | Msa1445330:intergenic |
| GGAAACCCAAGTCTTCAGCT+TGG | 0.581743 | tig0031043:-13152 | Msa1445330:intergenic |
| TAGTTTCTAATACGAGATTG+TGG | 0.601127 | tig0031043:-13123 | Msa1445330:intergenic |
| GCAACAAATAATCGGTAATG+CGG | 0.604762 | tig0031043:-13015 | Msa1445330:intergenic |
| TATGCTGCCAAAGTCAGCAT+TGG | 0.609608 | tig0031043:+13377 | Msa1445330:CDS |
| CAAAACATTGGTCCCCTCTG+TGG | 0.612855 | tig0031043:+12921 | Msa1445330:CDS |
| AACAACTTGAGGGATTGCAT+TGG | 0.627002 | tig0031043:-12493 | Msa1445330:intergenic |
| CTTCTTAATAACTTCCACAG+AGG | 0.665684 | tig0031043:-12935 | Msa1445330:intergenic |
| AAAGTTTAAAGAAAATGCAG+AGG | 0.668498 | tig0031043:+13560 | Msa1445330:CDS |
| GCATTATTGATAGCTTACAA+GGG | 0.683408 | tig0031043:+13582 | Msa1445330:CDS |
| TCTTAATAACTTCCACAGAG+GGG | 0.711124 | tig0031043:-12933 | Msa1445320:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTTATGTAATTTGGAAT+TGG | - | tig0031043:12641-12660 | Msa0049200:intergenic | 20.0% |
| !!! | AAAAAGTTGATTACAGATAA+GGG | - | tig0031043:12715-12734 | Msa1445330:intergenic | 20.0% |
| !!! | ATCAACTTTTTCAAACAAAT+TGG | + | tig0031043:12724-12743 | Msa1445330:CDS | 20.0% |
| !!! | AAGTTATTAAGAAGTTTGTT+CGG | + | tig0031043:12944-12963 | Msa1445330:CDS | 20.0% |
| !!! | AATTGTGTTTTGTATAAATG+TGG | + | tig0031043:12982-13001 | Msa1445330:CDS | 20.0% |
| !!! | GCTTGTTTTTAAATGTTTTA+TGG | - | tig0031043:13230-13249 | Msa1445330:intergenic | 20.0% |
| !!! | AGATTTATGTAATTTGGAAT+TGG | - | tig0031043:12641-12660 | Msa1445330:intergenic | 20.0% |
| !!! | AAAAAGTTGATTACAGATAA+GGG | - | tig0031043:12715-12734 | Msa1445330:intergenic | 20.0% |
| !!! | ATCAACTTTTTCAAACAAAT+TGG | + | tig0031043:12724-12743 | Msa1445330:CDS | 20.0% |
| !!! | AAGTTATTAAGAAGTTTGTT+CGG | + | tig0031043:12944-12963 | Msa1445330:CDS | 20.0% |
| !!! | AATTGTGTTTTGTATAAATG+TGG | + | tig0031043:12982-13001 | Msa1445330:CDS | 20.0% |
| !!! | GCTTGTTTTTAAATGTTTTA+TGG | - | tig0031043:13230-13249 | Msa1445330:intergenic | 20.0% |
| !! | GTAATTTGGAATTGGAATTA+AGG | - | tig0031043:12633-12652 | Msa0049200:intergenic | 25.0% |
| ! | GGATTCAGATTTATGTAATT+TGG | - | tig0031043:12647-12666 | Msa0049200:intergenic | 25.0% |
| ! | AACAAGTTTAGATACATAGA+TGG | - | tig0031043:12668-12687 | Msa0049200:intergenic | 25.0% |
| !! | TATGTATCTAAACTTGTTTC+AGG | + | tig0031043:12670-12689 | Msa1445330:CDS | 25.0% |
| !! | GAAAAAGTTGATTACAGATA+AGG | - | tig0031043:12716-12735 | Msa1445330:intergenic | 25.0% |
| ! | AAACTAGCAATCAAAATGTT+TGG | - | tig0031043:12898-12917 | Msa1445330:intergenic | 25.0% |
| !! | TTGATTTTATTCAGCGTTTT+GGG | + | tig0031043:13250-13269 | Msa1445330:CDS | 25.0% |
| ! | AATTGAGTTCTTCTTACATA+CGG | + | tig0031043:13353-13372 | Msa1445330:CDS | 25.0% |
| ! | ATCACAAAATCTATGTAAGA+AGG | + | tig0031043:13476-13495 | Msa1445330:CDS | 25.0% |
| ! | TTACATGTTATGTTTATCTG+AGG | + | tig0031043:13512-13531 | Msa1445330:CDS | 25.0% |
| !! | TCTGCATTTTCTTTAAACTT+TGG | - | tig0031043:13561-13580 | Msa1445330:intergenic | 25.0% |
| ! | AAAGTTTAAAGAAAATGCAG+AGG | + | tig0031043:13560-13579 | Msa1445330:CDS | 25.0% |
| !! | GTAATTTGGAATTGGAATTA+AGG | - | tig0031043:12633-12652 | Msa1445330:intergenic | 25.0% |
| ! | GGATTCAGATTTATGTAATT+TGG | - | tig0031043:12647-12666 | Msa1445330:intergenic | 25.0% |
| ! | AACAAGTTTAGATACATAGA+TGG | - | tig0031043:12668-12687 | Msa1445330:intergenic | 25.0% |
| !! | TATGTATCTAAACTTGTTTC+AGG | + | tig0031043:12670-12689 | Msa1445330:CDS | 25.0% |
| !! | GAAAAAGTTGATTACAGATA+AGG | - | tig0031043:12716-12735 | Msa1445330:intergenic | 25.0% |
| ! | AAACTAGCAATCAAAATGTT+TGG | - | tig0031043:12898-12917 | Msa1445330:intergenic | 25.0% |
| !! | TTGATTTTATTCAGCGTTTT+GGG | + | tig0031043:13250-13269 | Msa1445330:CDS | 25.0% |
| ! | AATTGAGTTCTTCTTACATA+CGG | + | tig0031043:13353-13372 | Msa1445330:CDS | 25.0% |
| ! | ATCACAAAATCTATGTAAGA+AGG | + | tig0031043:13476-13495 | Msa1445330:CDS | 25.0% |
| ! | TTACATGTTATGTTTATCTG+AGG | + | tig0031043:13512-13531 | Msa1445330:CDS | 25.0% |
| !! | TCTGCATTTTCTTTAAACTT+TGG | - | tig0031043:13561-13580 | Msa1445330:intergenic | 25.0% |
| ! | AAAGTTTAAAGAAAATGCAG+AGG | + | tig0031043:13560-13579 | Msa1445330:CDS | 25.0% |
| TAAACAGAAAAGTGGTTTCT+TGG | - | tig0031043:12606-12625 | Msa0049200:intergenic | 30.0% | |
| ! | ATTTGGAATTGGAATTAAGG+AGG | - | tig0031043:12630-12649 | Msa0049200:intergenic | 30.0% |
| ! | AACTCAAGTACTCTTTTCAA+AGG | + | tig0031043:12786-12805 | Msa1445330:CDS | 30.0% |
| TGTTGAAAGAGTTCAACTTT+AGG | - | tig0031043:12829-12848 | Msa1445330:intergenic | 30.0% | |
| AGTTGAACTCTTTCAACAAT+TGG | + | tig0031043:12831-12850 | Msa1445330:CDS | 30.0% | |
| GTTGAACTCTTTCAACAATT+GGG | + | tig0031043:12832-12851 | Msa1445330:CDS | 30.0% | |
| ! | TTTCAACAATTGGGTTTTCA+GGG | + | tig0031043:12841-12860 | Msa1445330:CDS | 30.0% |
| ! | TGCTAGTTTGAACAAAACAT+TGG | + | tig0031043:12909-12928 | Msa1445330:CDS | 30.0% |
| TTCTTAATAACTTCCACAGA+GGG | - | tig0031043:12937-12956 | Msa1445330:intergenic | 30.0% | |
| CAATGTTGGCAACAAATAAT+CGG | - | tig0031043:13026-13045 | Msa1445330:intergenic | 30.0% | |
| ACTCTTTAAGTAAGCAATGT+TGG | - | tig0031043:13040-13059 | Msa1445330:intergenic | 30.0% | |
| ATTGCTTACTTAAAGAGTTG+TGG | + | tig0031043:13042-13061 | Msa1445330:CDS | 30.0% | |
| TAGTTTCTAATACGAGATTG+TGG | - | tig0031043:13126-13145 | Msa1445330:intergenic | 30.0% | |
| ! | CCAACATTCTTGAATTTTGA+GGG | - | tig0031043:13176-13195 | Msa1445330:intergenic | 30.0% |
| ! | ACCAACATTCTTGAATTTTG+AGG | - | tig0031043:13177-13196 | Msa1445330:intergenic | 30.0% |
| ! | CTTGATTTTATTCAGCGTTT+TGG | + | tig0031043:13249-13268 | Msa1445330:CDS | 30.0% |
| ! | AAAAGGTTCCAAATTTGCTT+AGG | + | tig0031043:13304-13323 | Msa1445330:CDS | 30.0% |
| ! | AAAGGTTCCAAATTTGCTTA+GGG | + | tig0031043:13305-13324 | Msa1445330:CDS | 30.0% |
| GGTATCAGAGAAGAAATTAA+AGG | + | tig0031043:13326-13345 | Msa1445330:CDS | 30.0% | |
| TCAGAGAAGAAATTAAAGGT+TGG | + | tig0031043:13330-13349 | Msa1445330:CDS | 30.0% | |
| ATGCTGTACATCAAAATCAT+AGG | - | tig0031043:13411-13430 | Msa1445330:intergenic | 30.0% | |
| !! | TATGATTTTGATGTACAGCA+TGG | + | tig0031043:13410-13429 | Msa1445330:CDS | 30.0% |
| CATAACATGTAAAGAAAGCT+TGG | - | tig0031043:13504-13523 | Msa1445330:intergenic | 30.0% | |
| ! | GCATTATTGATAGCTTACAA+GGG | + | tig0031043:13582-13601 | Msa1445330:CDS | 30.0% |
| TAAACAGAAAAGTGGTTTCT+TGG | - | tig0031043:12606-12625 | Msa1445330:intergenic | 30.0% | |
| ! | ATTTGGAATTGGAATTAAGG+AGG | - | tig0031043:12630-12649 | Msa1445330:intergenic | 30.0% |
| ! | AACTCAAGTACTCTTTTCAA+AGG | + | tig0031043:12786-12805 | Msa1445330:CDS | 30.0% |
| TGTTGAAAGAGTTCAACTTT+AGG | - | tig0031043:12829-12848 | Msa1445330:intergenic | 30.0% | |
| AGTTGAACTCTTTCAACAAT+TGG | + | tig0031043:12831-12850 | Msa1445330:CDS | 30.0% | |
| GTTGAACTCTTTCAACAATT+GGG | + | tig0031043:12832-12851 | Msa1445330:CDS | 30.0% | |
| ! | TTTCAACAATTGGGTTTTCA+GGG | + | tig0031043:12841-12860 | Msa1445330:CDS | 30.0% |
| ! | TGCTAGTTTGAACAAAACAT+TGG | + | tig0031043:12909-12928 | Msa1445330:CDS | 30.0% |
| TTCTTAATAACTTCCACAGA+GGG | - | tig0031043:12937-12956 | Msa1445330:intergenic | 30.0% | |
| CAATGTTGGCAACAAATAAT+CGG | - | tig0031043:13026-13045 | Msa1445330:intergenic | 30.0% | |
| ACTCTTTAAGTAAGCAATGT+TGG | - | tig0031043:13040-13059 | Msa1445330:intergenic | 30.0% | |
| ATTGCTTACTTAAAGAGTTG+TGG | + | tig0031043:13042-13061 | Msa1445330:CDS | 30.0% | |
| TAGTTTCTAATACGAGATTG+TGG | - | tig0031043:13126-13145 | Msa1445330:intergenic | 30.0% | |
| ! | CCAACATTCTTGAATTTTGA+GGG | - | tig0031043:13176-13195 | Msa1445330:intergenic | 30.0% |
| ! | ACCAACATTCTTGAATTTTG+AGG | - | tig0031043:13177-13196 | Msa1445330:intergenic | 30.0% |
| ! | CTTGATTTTATTCAGCGTTT+TGG | + | tig0031043:13249-13268 | Msa1445330:CDS | 30.0% |
| ! | AAAAGGTTCCAAATTTGCTT+AGG | + | tig0031043:13304-13323 | Msa1445330:CDS | 30.0% |
| ! | AAAGGTTCCAAATTTGCTTA+GGG | + | tig0031043:13305-13324 | Msa1445330:CDS | 30.0% |
| GGTATCAGAGAAGAAATTAA+AGG | + | tig0031043:13326-13345 | Msa1445330:CDS | 30.0% | |
| TCAGAGAAGAAATTAAAGGT+TGG | + | tig0031043:13330-13349 | Msa1445330:CDS | 30.0% | |
| ATGCTGTACATCAAAATCAT+AGG | - | tig0031043:13411-13430 | Msa1445330:intergenic | 30.0% | |
| !! | TATGATTTTGATGTACAGCA+TGG | + | tig0031043:13410-13429 | Msa1445330:CDS | 30.0% |
| CATAACATGTAAAGAAAGCT+TGG | - | tig0031043:13504-13523 | Msa1445330:intergenic | 30.0% | |
| ! | GCATTATTGATAGCTTACAA+GGG | + | tig0031043:13582-13601 | Msa1445330:CDS | 30.0% |
| ! | GTTTGAAGATTGGCTAATTG+GGG | - | tig0031043:12584-12603 | Msa0049200:intergenic | 35.0% |
| ! | GGTTTGAAGATTGGCTAATT+GGG | - | tig0031043:12585-12604 | Msa0049200:intergenic | 35.0% |
| ! | TGGTTTGAAGATTGGCTAAT+TGG | - | tig0031043:12586-12605 | Msa0049200:intergenic | 35.0% |
| ! | TGGTTTCTTGGTTTGAAGAT+TGG | - | tig0031043:12594-12613 | Msa0049200:intergenic | 35.0% |
| AAGGAGGTTAAACAGAAAAG+TGG | - | tig0031043:12614-12633 | Msa0049200:intergenic | 35.0% | |
| ! | TTACAGATAAGGGCTTTTCA+GGG | - | tig0031043:12705-12724 | Msa1445330:intergenic | 35.0% |
| ! | ATTACAGATAAGGGCTTTTC+AGG | - | tig0031043:12706-12725 | Msa1445330:intergenic | 35.0% |
| ! | CTTTCAACAATTGGGTTTTC+AGG | + | tig0031043:12840-12859 | Msa1445330:CDS | 35.0% |
| TCTTAATAACTTCCACAGAG+GGG | - | tig0031043:12936-12955 | Msa1445330:intergenic | 35.0% | |
| CTTCTTAATAACTTCCACAG+AGG | - | tig0031043:12938-12957 | Msa1445330:intergenic | 35.0% | |
| ! | GTGTTTTGTATAAATGTGGC+TGG | + | tig0031043:12986-13005 | Msa1445330:CDS | 35.0% |
| CAACAAATAATCGGTAATGC+GGG | - | tig0031043:13017-13036 | Msa1445330:intergenic | 35.0% | |
| GCAACAAATAATCGGTAATG+CGG | - | tig0031043:13018-13037 | Msa1445330:intergenic | 35.0% | |
| TTAAAGAGTTGTGGCATTGT+TGG | + | tig0031043:13051-13070 | Msa1445330:CDS | 35.0% | |
| TAAAGAGTTGTGGCATTGTT+GGG | + | tig0031043:13052-13071 | Msa1445330:CDS | 35.0% | |
| CCCTCAAAATTCAAGAATGT+TGG | + | tig0031043:13173-13192 | Msa1445330:CDS | 35.0% | |
| GAGCTTGCAAATGTTCAAAA+AGG | + | tig0031043:13287-13306 | Msa1445330:CDS | 35.0% | |
| TCTGATACCCTAAGCAAATT+TGG | - | tig0031043:13315-13334 | Msa1445330:intergenic | 35.0% | |
| !! | CAAAGTCAGCATTGGTAAAT+CGG | + | tig0031043:13385-13404 | Msa1445330:CDS | 35.0% |
| AGCTGAAAAACTCTAAATCG+AGG | - | tig0031043:13450-13469 | Msa1445330:intergenic | 35.0% | |
| ! | GGCATTATTGATAGCTTACA+AGG | + | tig0031043:13581-13600 | Msa1445330:CDS | 35.0% |
| ! | GTTTGAAGATTGGCTAATTG+GGG | - | tig0031043:12584-12603 | Msa1445330:intergenic | 35.0% |
| ! | GGTTTGAAGATTGGCTAATT+GGG | - | tig0031043:12585-12604 | Msa1445330:intergenic | 35.0% |
| ! | TGGTTTGAAGATTGGCTAAT+TGG | - | tig0031043:12586-12605 | Msa1445330:intergenic | 35.0% |
| ! | TGGTTTCTTGGTTTGAAGAT+TGG | - | tig0031043:12594-12613 | Msa1445330:intergenic | 35.0% |
| AAGGAGGTTAAACAGAAAAG+TGG | - | tig0031043:12614-12633 | Msa1445330:intergenic | 35.0% | |
| ! | TTACAGATAAGGGCTTTTCA+GGG | - | tig0031043:12705-12724 | Msa1445330:intergenic | 35.0% |
| ! | ATTACAGATAAGGGCTTTTC+AGG | - | tig0031043:12706-12725 | Msa1445330:intergenic | 35.0% |
| ! | CTTTCAACAATTGGGTTTTC+AGG | + | tig0031043:12840-12859 | Msa1445330:CDS | 35.0% |
| TCTTAATAACTTCCACAGAG+GGG | - | tig0031043:12936-12955 | Msa1445330:intergenic | 35.0% | |
| CTTCTTAATAACTTCCACAG+AGG | - | tig0031043:12938-12957 | Msa1445330:intergenic | 35.0% | |
| ! | GTGTTTTGTATAAATGTGGC+TGG | + | tig0031043:12986-13005 | Msa1445330:CDS | 35.0% |
| CAACAAATAATCGGTAATGC+GGG | - | tig0031043:13017-13036 | Msa1445330:intergenic | 35.0% | |
| GCAACAAATAATCGGTAATG+CGG | - | tig0031043:13018-13037 | Msa1445330:intergenic | 35.0% | |
| TTAAAGAGTTGTGGCATTGT+TGG | + | tig0031043:13051-13070 | Msa1445330:CDS | 35.0% | |
| TAAAGAGTTGTGGCATTGTT+GGG | + | tig0031043:13052-13071 | Msa1445330:CDS | 35.0% | |
| CCCTCAAAATTCAAGAATGT+TGG | + | tig0031043:13173-13192 | Msa1445330:CDS | 35.0% | |
| GAGCTTGCAAATGTTCAAAA+AGG | + | tig0031043:13287-13306 | Msa1445330:CDS | 35.0% | |
| TCTGATACCCTAAGCAAATT+TGG | - | tig0031043:13315-13334 | Msa1445330:intergenic | 35.0% | |
| !! | CAAAGTCAGCATTGGTAAAT+CGG | + | tig0031043:13385-13404 | Msa1445330:CDS | 35.0% |
| AGCTGAAAAACTCTAAATCG+AGG | - | tig0031043:13450-13469 | Msa1445330:intergenic | 35.0% | |
| ! | GGCATTATTGATAGCTTACA+AGG | + | tig0031043:13581-13600 | Msa1445330:CDS | 35.0% |
| ! | AAGAGAGCGTAACAACTTGA+GGG | - | tig0031043:12506-12525 | Msa0049200:intergenic | 40.0% |
| CGAAGTGAGTTAGAACTGAA+AGG | - | tig0031043:12529-12548 | Msa0049200:intergenic | 40.0% | |
| ! | TACAGATAAGGGCTTTTCAG+GGG | - | tig0031043:12704-12723 | Msa1445330:intergenic | 40.0% |
| TTGAGTTCTCTGACGAATGA+TGG | - | tig0031043:12773-12792 | Msa1445330:intergenic | 40.0% | |
| !! | GGTTTTCAGGGTTCTCAATT+AGG | + | tig0031043:12853-12872 | Msa1445330:CDS | 40.0% |
| !! | CGATTTACCAATGCTGACTT+TGG | - | tig0031043:13387-13406 | Msa1445330:intergenic | 40.0% |
| !! | GATTTTGATGTACAGCATGG+AGG | + | tig0031043:13413-13432 | Msa1445330:CDS | 40.0% |
| ! | AAGAGAGCGTAACAACTTGA+GGG | - | tig0031043:12506-12525 | Msa1445330:intergenic | 40.0% |
| CGAAGTGAGTTAGAACTGAA+AGG | - | tig0031043:12529-12548 | Msa1445330:intergenic | 40.0% | |
| ! | TACAGATAAGGGCTTTTCAG+GGG | - | tig0031043:12704-12723 | Msa1445330:intergenic | 40.0% |
| TTGAGTTCTCTGACGAATGA+TGG | - | tig0031043:12773-12792 | Msa1445330:intergenic | 40.0% | |
| !! | GGTTTTCAGGGTTCTCAATT+AGG | + | tig0031043:12853-12872 | Msa1445330:CDS | 40.0% |
| !! | CGATTTACCAATGCTGACTT+TGG | - | tig0031043:13387-13406 | Msa1445330:intergenic | 40.0% |
| !! | GATTTTGATGTACAGCATGG+AGG | + | tig0031043:13413-13432 | Msa1445330:CDS | 40.0% |
| ! | GAAGAGAGCGTAACAACTTG+AGG | - | tig0031043:12507-12526 | Msa0049200:intergenic | 45.0% |
| TTGTGGCATTGTTGGGAATC+AGG | + | tig0031043:13059-13078 | Msa1445330:CDS | 45.0% | |
| TGTTTCCCAAGCTGAAGACT+TGG | + | tig0031043:13146-13165 | Msa1445330:CDS | 45.0% | |
| GTTTCCCAAGCTGAAGACTT+GGG | + | tig0031043:13147-13166 | Msa1445330:CDS | 45.0% | |
| GAAACCCAAGTCTTCAGCTT+GGG | - | tig0031043:13154-13173 | Msa1445330:intergenic | 45.0% | |
| TATGCTGCCAAAGTCAGCAT+TGG | + | tig0031043:13377-13396 | Msa1445330:CDS | 45.0% | |
| ! | GAAGAGAGCGTAACAACTTG+AGG | - | tig0031043:12507-12526 | Msa1445330:intergenic | 45.0% |
| TTGTGGCATTGTTGGGAATC+AGG | + | tig0031043:13059-13078 | Msa1445330:CDS | 45.0% | |
| TGTTTCCCAAGCTGAAGACT+TGG | + | tig0031043:13146-13165 | Msa1445330:CDS | 45.0% | |
| GTTTCCCAAGCTGAAGACTT+GGG | + | tig0031043:13147-13166 | Msa1445330:CDS | 45.0% | |
| GAAACCCAAGTCTTCAGCTT+GGG | - | tig0031043:13154-13173 | Msa1445330:intergenic | 45.0% | |
| TATGCTGCCAAAGTCAGCAT+TGG | + | tig0031043:13377-13396 | Msa1445330:CDS | 45.0% | |
| CAAAACATTGGTCCCCTCTG+TGG | + | tig0031043:12921-12940 | Msa1445330:CDS | 50.0% | |
| GGAAACCCAAGTCTTCAGCT+TGG | - | tig0031043:13155-13174 | Msa1445330:intergenic | 50.0% | |
| CAAAACATTGGTCCCCTCTG+TGG | + | tig0031043:12921-12940 | Msa1445330:CDS | 50.0% | |
| GGAAACCCAAGTCTTCAGCT+TGG | - | tig0031043:13155-13174 | Msa1445330:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031043 | gene | 12496 | 13623 | 12496 | ID=Msa1445330;Name=Msa1445330 |
| tig0031043 | mRNA | 12496 | 13623 | 12496 | ID=Msa1445330-mRNA-1;Parent=Msa1445330;Name=Msa1445330-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|375 |
| tig0031043 | exon | 12496 | 13623 | 12496 | ID=Msa1445330-mRNA-1:exon:14942;Parent=Msa1445330-mRNA-1 |
| tig0031043 | CDS | 12496 | 13623 | 12496 | ID=Msa1445330-mRNA-1:cds;Parent=Msa1445330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
