AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1445340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445340 MtrunA17_Chr8g0377801 80.952 378 70 2 1 376 17 394 0.0 576
Msa1445340 MtrunA17_Chr8g0377781 74.531 373 91 2 1 369 1 373 0.0 530
Msa1445340 MtrunA17_Chr2g0296191 27.704 379 256 5 1 368 137 508 3.21e-37 143
Msa1445340 MtrunA17_Chr2g0296191 30.363 303 206 3 69 367 693 994 5.72e-33 130
Msa1445340 MtrunA17_Chr2g0296711 29.431 299 208 2 71 367 86 383 1.41e-36 137
Msa1445340 MtrunA17_Chr2g0295731 26.667 300 218 2 69 368 78 375 4.12e-35 132
Msa1445340 MtrunA17_Chr4g0067141 28.614 339 233 4 34 369 39 371 4.71e-35 132
Msa1445340 MtrunA17_Chr2g0296721 28.247 308 217 3 69 374 81 386 5.81e-35 132
Msa1445340 MtrunA17_Chr2g0295761 27.893 337 235 5 34 367 55 386 8.41e-35 132
Msa1445340 MtrunA17_Chr2g0286191 29.254 335 228 7 37 368 29 357 1.15e-34 131
Msa1445340 MtrunA17_Chr2g0296741 27.273 308 221 2 69 374 101 407 1.37e-33 129
Msa1445340 MtrunA17_Chr2g0315731 29.431 299 208 2 71 367 103 400 2.03e-33 129
Msa1445340 MtrunA17_Chr2g0296151 29.375 320 220 3 59 374 57 374 4.94e-33 127
Msa1445340 MtrunA17_Chr2g0296171 29.934 304 208 3 69 368 91 393 9.19e-33 127
Msa1445340 MtrunA17_Chr2g0296221 28.169 355 249 4 19 368 59 412 1.67e-32 126
Msa1445340 MtrunA17_Chr2g0296291 28.070 342 206 4 72 374 64 404 3.76e-31 122
Msa1445340 MtrunA17_Chr2g0296121 27.273 352 247 4 26 373 113 459 9.32e-31 122
Msa1445340 MtrunA17_Chr4g0001831 27.072 362 234 9 23 368 21 368 3.90e-30 119
Msa1445340 MtrunA17_Chr2g0296251 27.003 337 208 5 69 368 61 396 3.92e-30 119
Msa1445340 MtrunA17_Chr2g0296231 28.904 301 209 4 69 367 80 377 1.39e-28 115
Msa1445340 MtrunA17_Chr4g0067671 25.071 351 256 5 7 353 8 355 2.26e-28 114
Msa1445340 MtrunA17_Chr4g0067121 25.287 348 244 5 34 374 46 384 4.70e-28 113
Msa1445340 MtrunA17_Chr2g0296111 28.617 311 207 6 71 374 72 374 3.77e-27 110
Msa1445340 MtrunA17_Chr2g0296301 22.924 301 228 3 69 367 65 363 1.77e-25 106
Msa1445340 MtrunA17_Chr2g0295741 25.155 322 231 5 59 374 63 380 1.70e-24 103
Msa1445340 MtrunA17_Chr2g0296181 26.821 302 191 4 69 368 82 355 3.11e-23 100
Msa1445340 MtrunA17_Chr2g0296211 26.214 206 137 1 183 373 156 361 2.28e-17 82.8
Msa1445340 MtrunA17_Chr2g0296701 28.947 152 108 0 223 374 9 160 8.46e-16 74.7
Msa1445340 MtrunA17_Chr2g0296551 30.263 152 106 0 223 374 37 188 2.83e-15 73.9
Msa1445340 MtrunA17_Chr2g0296131 27.848 158 114 0 217 374 9 166 1.62e-14 71.2
Msa1445340 MtrunA17_Chr2g0296751 30.894 123 85 0 242 364 1 123 2.38e-14 70.5
Msa1445340 MtrunA17_Chr2g0286221 26.286 175 124 4 201 374 3 173 1.42e-13 68.6
Msa1445340 MtrunA17_Chr2g0295711 32.456 114 73 1 59 168 63 176 1.91e-12 65.9
Msa1445340 MtrunA17_Chr2g0296161 26.282 156 115 0 223 378 11 166 2.00e-11 62.0
Msa1445340 MtrunA17_Chr2g0295751 31.858 113 73 1 59 167 64 176 5.03e-11 63.9
Msa1445340 MtrunA17_Chr8g0339041 30.667 150 99 3 222 368 201 348 6.30e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445340 AT5G64950.1 38.592 355 203 6 24 368 27 376 4.29e-73 233
Msa1445340 AT5G07900.1 28.406 345 240 5 30 369 59 401 4.98e-43 154
Msa1445340 AT1G21150.3 28.280 343 235 6 27 364 11 347 5.97e-36 134
Msa1445340 AT1G21150.1 29.430 316 212 6 54 364 74 383 1.92e-35 134
Msa1445340 AT1G21150.2 29.430 316 212 6 54 364 138 447 6.14e-35 134
Msa1445340 AT1G62010.1 26.062 353 217 6 62 374 59 407 1.70e-24 104
Msa1445340 AT1G61990.2 24.927 341 205 6 73 372 84 414 2.02e-24 103
Msa1445340 AT1G61990.1 24.927 341 205 6 73 372 84 414 2.02e-24 103
Msa1445340 AT1G62120.1 24.691 405 249 7 19 374 32 429 7.85e-22 96.7
Msa1445340 AT1G61970.2 24.798 371 232 7 22 353 37 399 8.89e-22 96.7
Msa1445340 AT1G61970.7 24.798 371 232 7 22 353 37 399 8.89e-22 96.7
Msa1445340 AT1G61970.6 24.798 371 232 7 22 353 37 399 8.89e-22 96.7
Msa1445340 AT1G61970.3 24.798 371 232 7 22 353 37 399 8.89e-22 96.7
Msa1445340 AT1G61970.5 24.798 371 232 7 22 353 37 399 8.89e-22 96.7
Msa1445340 AT1G61970.4 24.798 371 232 7 22 353 37 399 8.89e-22 96.7
Msa1445340 AT1G61970.1 24.798 371 232 7 22 353 37 399 8.89e-22 96.7
Msa1445340 AT1G61980.3 24.022 358 219 4 53 358 48 404 1.88e-20 92.8
Msa1445340 AT1G61980.2 24.022 358 219 4 53 358 48 404 1.88e-20 92.8
Msa1445340 AT1G61980.1 24.022 358 219 4 53 358 48 404 1.88e-20 92.8
Msa1445340 AT3G46950.1 26.538 260 183 3 23 282 37 288 2.34e-16 80.9
Msa1445340 AT1G56380.1 22.714 339 220 8 59 355 32 370 6.99e-15 75.9
Msa1445340 AT1G56380.2 22.515 342 223 8 59 358 43 384 7.45e-15 75.9
Msa1445340 AT1G62085.1 25.000 280 184 6 27 282 20 297 1.37e-13 72.4
Msa1445340 AT1G62085.2 25.000 280 184 6 27 282 20 297 1.37e-13 72.4
Msa1445340 AT1G61960.1 24.000 250 185 2 33 282 49 293 1.40e-13 72.4
Msa1445340 AT1G61960.1 26.374 182 130 2 192 369 272 453 6.27e-11 63.9
Msa1445340 AT1G62110.1 23.729 295 205 5 4 287 14 299 3.15e-13 71.2
Msa1445340 AT5G23930.1 26.007 273 181 4 19 282 30 290 1.55e-12 68.9
Msa1445340 AT1G62150.1 22.925 253 185 3 33 282 55 300 7.12e-12 67.0

Find 63 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATTCAACTTTAGGTTTA+AGG 0.104983 tig0031043:-15819 Msa1445340:intergenic
TCTGATACCCTAAGCAAATT+TGG 0.167535 tig0031043:-16309 Msa1445340:intergenic
TATGTATCTAAACTTGTTTC+AGG 0.182146 tig0031043:+15670 Msa1445340:CDS
TGGTTTGAAGATTGGTTAAT+TGG 0.193531 tig0031043:-15583 Msa1445340:intergenic
CTTGATTTCATTCAGCGTTT+TGG 0.212498 tig0031043:+16246 Msa1445340:CDS
GTTTGAGCCATAAAACATTT+AGG 0.239728 tig0031043:+16217 Msa1445340:CDS
GGTATCAGAGAAGAAGTTAA+AGG 0.274790 tig0031043:+16323 Msa1445340:CDS
AGTTGAATTCTTTCAACAAT+TGG 0.279256 tig0031043:+15831 Msa1445340:CDS
GGTTTGAAGATTGGTTAATT+GGG 0.281008 tig0031043:-15582 Msa1445340:intergenic
GTAATCTGGAATTGGAATTA+AGG 0.287638 tig0031043:-15630 Msa1445340:intergenic
TAAACAGAAAAGTGGTTTCT+TGG 0.299414 tig0031043:-15603 Msa1445340:intergenic
GTTCAAACTAGCAGACAAAA+TGG 0.299580 tig0031043:-15899 Msa1445340:intergenic
TAGAGAGTTGTGGCATTGTT+GGG 0.299637 tig0031043:+16052 Msa1445340:CDS
GAGCTTGCAAATGTTCAAAA+AGG 0.301950 tig0031043:+16284 Msa1445340:CDS
AGATTCAGATTTATGTAATC+TGG 0.309227 tig0031043:-15644 Msa1445340:intergenic
TGTTGAAAGAATTCAACTTT+AGG 0.311645 tig0031043:-15826 Msa1445340:intergenic
TTTATCCGAGGACACATTCT+TGG 0.328463 tig0031043:+16521 Msa1445340:CDS
TTGTGGCATTGTTGGGGATC+AGG 0.331357 tig0031043:+16059 Msa1445340:CDS
GAATTCAACTTTAGGTTTAA+GGG 0.331941 tig0031043:-15818 Msa1445340:intergenic
AGATTTATGTAATCTGGAAT+TGG 0.334603 tig0031043:-15638 Msa1445340:intergenic
AATTCAAGAATGCTTGTTCA+TGG 0.351341 tig0031043:+16177 Msa1445340:CDS
AAAAGGTTCCAAATTTGCTT+AGG 0.354562 tig0031043:+16301 Msa1445340:CDS
CAAAGTCAGCATTGGTTAAT+CGG 0.362750 tig0031043:+16382 Msa1445340:CDS
GTTGAATTCTTTCAACAATT+GGG 0.376074 tig0031043:+15832 Msa1445340:CDS
CAATGTTGGCAACAAATGTT+TGG 0.383801 tig0031043:-16023 Msa1445340:intergenic
TGGTTTCTTGGTTTGAAGAT+TGG 0.387327 tig0031043:-15591 Msa1445340:intergenic
CGATTAACCAATGCTGACTT+TGG 0.389786 tig0031043:-16381 Msa1445340:intergenic
TTAGAGAGTTGTGGCATTGT+TGG 0.401579 tig0031043:+16051 Msa1445340:CDS
GAAGCTATTAAGAAAATTGT+AGG 0.405231 tig0031043:+15943 Msa1445340:CDS
AAAGGTTCCAAATTTGCTTA+GGG 0.440166 tig0031043:+16302 Msa1445340:CDS
GTATTTGAGTTCTCTGACAA+AGG 0.462198 tig0031043:-15774 Msa1445340:intergenic
TTTAACACATAAAGAAAGCT+TGG 0.468094 tig0031043:-16498 Msa1445340:intergenic
AAACTAGCAGACAAAATGGT+TGG 0.477531 tig0031043:-15895 Msa1445340:intergenic
TTCTTAATAGCTTCCACAGA+TGG 0.480816 tig0031043:-15934 Msa1445340:intergenic
TCAGAGAAGAAGTTAAAGGT+TGG 0.481727 tig0031043:+16327 Msa1445340:CDS
ATTCAAGAATGCTTGTTCAT+GGG 0.496020 tig0031043:+16178 Msa1445340:CDS
TTGAGTTCTCTGACAAAGGA+TGG 0.502013 tig0031043:-15770 Msa1445340:intergenic
AAGGAGGTTAAACAGAAAAG+TGG 0.503037 tig0031043:-15611 Msa1445340:intergenic
GTTTGAAGATTGGTTAATTG+GGG 0.503121 tig0031043:-15581 Msa1445340:intergenic
CATTATTGATAGCTTACAAA+GGG 0.508791 tig0031043:+16580 Msa1445340:CDS
ATCACAAAATCTATGTAAGA+AGG 0.510006 tig0031043:+16473 Msa1445340:CDS
GCAACAAATGTTTGGTACAC+TGG 0.517326 tig0031043:-16015 Msa1445340:intergenic
ACTCTCTAAGAAAGCAATGT+TGG 0.518565 tig0031043:-16037 Msa1445340:intergenic
AGAGAGTTGTGGCATTGTTG+GGG 0.519144 tig0031043:+16053 Msa1445340:CDS
AAGAGAACGTAACAACTTGA+GGG 0.534047 tig0031043:-15503 Msa1445340:intergenic
CGAAGTGAGTTAGAACTGAA+AGG 0.549827 tig0031043:-15526 Msa1445340:intergenic
TCTTAATAGCTTCCACAGAT+GGG 0.550512 tig0031043:-15933 Msa1445340:intergenic
CTTGTCCAAGAATGTGTCCT+CGG 0.551926 tig0031043:-16526 Msa1445340:intergenic
GAAGAGAACGTAACAACTTG+AGG 0.552986 tig0031043:-15504 Msa1445340:intergenic
ATTGCTTTCTTAGAGAGTTG+TGG 0.553536 tig0031043:+16042 Msa1445340:CDS
ATCTGGAATTGGAATTAAGG+AGG 0.564393 tig0031043:-15627 Msa1445340:intergenic
TGCTAGTTTGAACAAAACAT+TGG 0.566720 tig0031043:+15909 Msa1445340:CDS
CAAAACATTGGTCCCATCTG+TGG 0.566916 tig0031043:+15921 Msa1445340:CDS
TATGCTGCCAAAGTCAGCAT+TGG 0.579046 tig0031043:+16374 Msa1445340:CDS
AAGCTATTAAGAAAATTGTA+GGG 0.601947 tig0031043:+15944 Msa1445340:CDS
TTATGTGTTAAATTTATCCG+AGG 0.613152 tig0031043:+16509 Msa1445340:CDS
TAGTTTCTAATACGAGATTG+TGG 0.627705 tig0031043:-16120 Msa1445340:intergenic
GCATTATTGATAGCTTACAA+AGG 0.630637 tig0031043:+16579 Msa1445340:CDS
ATGCTATACATCAAAATCAG+AGG 0.630674 tig0031043:-16405 Msa1445340:intergenic
AACAACTTGAGGGATTGCAT+TGG 0.639420 tig0031043:-15493 Msa1445340:intergenic
AAAGTTTAAAGAAAATGCAG+AGG 0.668498 tig0031043:+16557 Msa1445340:CDS
ATTATTGATAGCTTACAAAG+GGG 0.710219 tig0031043:+16581 Msa1445340:CDS
AGAGCGTCAAGAGATCATTG+CGG 0.796784 tig0031043:-16616 Msa1445330:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAGTTGATTACAGATAA+GGG - tig0031043:15715-15734 Msa1445340:intergenic 20.0%
!!! ATCAACTTTTTCAAACAAAT+TGG + tig0031043:15724-15743 Msa1445340:CDS 20.0%
!! AAGCTATTAAGAAAATTGTA+GGG + tig0031043:15944-15963 Msa1445340:CDS 20.0%
!!! AAAAAGTTGATTACAGATAA+GGG - tig0031043:15715-15734 Msa1445340:intergenic 20.0%
!!! ATCAACTTTTTCAAACAAAT+TGG + tig0031043:15724-15743 Msa1445340:CDS 20.0%
!! AAGCTATTAAGAAAATTGTA+GGG + tig0031043:15944-15963 Msa1445340:CDS 20.0%
!! AGATTTATGTAATCTGGAAT+TGG - tig0031043:15641-15660 None:intergenic 25.0%
! AGATTCAGATTTATGTAATC+TGG - tig0031043:15647-15666 None:intergenic 25.0%
!! TATGTATCTAAACTTGTTTC+AGG + tig0031043:15670-15689 Msa1445340:CDS 25.0%
!! GAAAAAGTTGATTACAGATA+AGG - tig0031043:15716-15735 Msa1445340:intergenic 25.0%
!! GAATTCAACTTTAGGTTTAA+GGG - tig0031043:15821-15840 Msa1445340:intergenic 25.0%
!! AGAATTCAACTTTAGGTTTA+AGG - tig0031043:15822-15841 Msa1445340:intergenic 25.0%
! TGTTGAAAGAATTCAACTTT+AGG - tig0031043:15829-15848 Msa1445340:intergenic 25.0%
! AGTTGAATTCTTTCAACAAT+TGG + tig0031043:15831-15850 Msa1445340:CDS 25.0%
! GTTGAATTCTTTCAACAATT+GGG + tig0031043:15832-15851 Msa1445340:CDS 25.0%
! GAAGCTATTAAGAAAATTGT+AGG + tig0031043:15943-15962 Msa1445340:CDS 25.0%
!!! GCTTTTTCCTAAATGTTTTA+TGG - tig0031043:16227-16246 Msa1445340:intergenic 25.0%
! AAAGCTGAAAAACTCTAAAT+CGG - tig0031043:16449-16468 Msa1445340:intergenic 25.0%
! ATCACAAAATCTATGTAAGA+AGG + tig0031043:16473-16492 Msa1445340:CDS 25.0%
! TTTAACACATAAAGAAAGCT+TGG - tig0031043:16501-16520 Msa1445340:intergenic 25.0%
! TTATGTGTTAAATTTATCCG+AGG + tig0031043:16509-16528 Msa1445340:CDS 25.0%
!! TCTGCATTTTCTTTAAACTT+TGG - tig0031043:16558-16577 Msa1445340:intergenic 25.0%
! AAAGTTTAAAGAAAATGCAG+AGG + tig0031043:16557-16576 Msa1445340:CDS 25.0%
!! CATTATTGATAGCTTACAAA+GGG + tig0031043:16580-16599 Msa1445340:CDS 25.0%
!! ATTATTGATAGCTTACAAAG+GGG + tig0031043:16581-16600 Msa1445340:CDS 25.0%
!! AGATTTATGTAATCTGGAAT+TGG - tig0031043:15641-15660 Msa1445340:intergenic 25.0%
! AGATTCAGATTTATGTAATC+TGG - tig0031043:15647-15666 Msa1445340:intergenic 25.0%
!! TATGTATCTAAACTTGTTTC+AGG + tig0031043:15670-15689 Msa1445340:CDS 25.0%
!! GAAAAAGTTGATTACAGATA+AGG - tig0031043:15716-15735 Msa1445340:intergenic 25.0%
!! GAATTCAACTTTAGGTTTAA+GGG - tig0031043:15821-15840 Msa1445340:intergenic 25.0%
!! AGAATTCAACTTTAGGTTTA+AGG - tig0031043:15822-15841 Msa1445340:intergenic 25.0%
! TGTTGAAAGAATTCAACTTT+AGG - tig0031043:15829-15848 Msa1445340:intergenic 25.0%
! AGTTGAATTCTTTCAACAAT+TGG + tig0031043:15831-15850 Msa1445340:CDS 25.0%
! GTTGAATTCTTTCAACAATT+GGG + tig0031043:15832-15851 Msa1445340:CDS 25.0%
! GAAGCTATTAAGAAAATTGT+AGG + tig0031043:15943-15962 Msa1445340:CDS 25.0%
!!! GCTTTTTCCTAAATGTTTTA+TGG - tig0031043:16227-16246 Msa1445340:intergenic 25.0%
! AAAGCTGAAAAACTCTAAAT+CGG - tig0031043:16449-16468 Msa1445340:intergenic 25.0%
! ATCACAAAATCTATGTAAGA+AGG + tig0031043:16473-16492 Msa1445340:CDS 25.0%
! TTTAACACATAAAGAAAGCT+TGG - tig0031043:16501-16520 Msa1445340:intergenic 25.0%
! TTATGTGTTAAATTTATCCG+AGG + tig0031043:16509-16528 Msa1445340:CDS 25.0%
!! TCTGCATTTTCTTTAAACTT+TGG - tig0031043:16558-16577 Msa1445340:intergenic 25.0%
! AAAGTTTAAAGAAAATGCAG+AGG + tig0031043:16557-16576 Msa1445340:CDS 25.0%
!! CATTATTGATAGCTTACAAA+GGG + tig0031043:16580-16599 Msa1445340:CDS 25.0%
!! ATTATTGATAGCTTACAAAG+GGG + tig0031043:16581-16600 Msa1445340:CDS 25.0%
! GTTTGAAGATTGGTTAATTG+GGG - tig0031043:15584-15603 None:intergenic 30.0%
! GGTTTGAAGATTGGTTAATT+GGG - tig0031043:15585-15604 None:intergenic 30.0%
! TGGTTTGAAGATTGGTTAAT+TGG - tig0031043:15586-15605 None:intergenic 30.0%
TAAACAGAAAAGTGGTTTCT+TGG - tig0031043:15606-15625 None:intergenic 30.0%
! GTAATCTGGAATTGGAATTA+AGG - tig0031043:15633-15652 None:intergenic 30.0%
! TTTCAACAATTGGGTTTTCA+GGG + tig0031043:15841-15860 Msa1445340:CDS 30.0%
! TGCTAGTTTGAACAAAACAT+TGG + tig0031043:15909-15928 Msa1445340:CDS 30.0%
TAGTTTCTAATACGAGATTG+TGG - tig0031043:16123-16142 Msa1445340:intergenic 30.0%
! TGTTTTGCAAGCTGAAAAAT+TGG + tig0031043:16143-16162 Msa1445340:CDS 30.0%
! GTTTTGCAAGCTGAAAAATT+GGG + tig0031043:16144-16163 Msa1445340:CDS 30.0%
! CAAGCATTCTTGAATTTTGA+TGG - tig0031043:16173-16192 Msa1445340:intergenic 30.0%
AATTCAAGAATGCTTGTTCA+TGG + tig0031043:16177-16196 Msa1445340:CDS 30.0%
ATTCAAGAATGCTTGTTCAT+GGG + tig0031043:16178-16197 Msa1445340:CDS 30.0%
GTTTGAGCCATAAAACATTT+AGG + tig0031043:16217-16236 Msa1445340:CDS 30.0%
! TTGATTTCATTCAGCGTTTT+GGG + tig0031043:16247-16266 Msa1445340:CDS 30.0%
! AAAAGGTTCCAAATTTGCTT+AGG + tig0031043:16301-16320 Msa1445340:CDS 30.0%
! AAAGGTTCCAAATTTGCTTA+GGG + tig0031043:16302-16321 Msa1445340:CDS 30.0%
ATGCTATACATCAAAATCAG+AGG - tig0031043:16408-16427 Msa1445340:intergenic 30.0%
!! TCTGATTTTGATGTATAGCA+TGG + tig0031043:16407-16426 Msa1445340:CDS 30.0%
AAGCTGAAAAACTCTAAATC+GGG - tig0031043:16448-16467 Msa1445340:intergenic 30.0%
! GCATTATTGATAGCTTACAA+AGG + tig0031043:16579-16598 Msa1445340:CDS 30.0%
! GTTTGAAGATTGGTTAATTG+GGG - tig0031043:15584-15603 Msa1445340:intergenic 30.0%
! GGTTTGAAGATTGGTTAATT+GGG - tig0031043:15585-15604 Msa1445340:intergenic 30.0%
! TGGTTTGAAGATTGGTTAAT+TGG - tig0031043:15586-15605 Msa1445340:intergenic 30.0%
TAAACAGAAAAGTGGTTTCT+TGG - tig0031043:15606-15625 Msa1445340:intergenic 30.0%
! GTAATCTGGAATTGGAATTA+AGG - tig0031043:15633-15652 Msa1445340:intergenic 30.0%
! TTTCAACAATTGGGTTTTCA+GGG + tig0031043:15841-15860 Msa1445340:CDS 30.0%
! TGCTAGTTTGAACAAAACAT+TGG + tig0031043:15909-15928 Msa1445340:CDS 30.0%
TAGTTTCTAATACGAGATTG+TGG - tig0031043:16123-16142 Msa1445340:intergenic 30.0%
! TGTTTTGCAAGCTGAAAAAT+TGG + tig0031043:16143-16162 Msa1445340:CDS 30.0%
! GTTTTGCAAGCTGAAAAATT+GGG + tig0031043:16144-16163 Msa1445340:CDS 30.0%
! CAAGCATTCTTGAATTTTGA+TGG - tig0031043:16173-16192 Msa1445340:intergenic 30.0%
AATTCAAGAATGCTTGTTCA+TGG + tig0031043:16177-16196 Msa1445340:CDS 30.0%
ATTCAAGAATGCTTGTTCAT+GGG + tig0031043:16178-16197 Msa1445340:CDS 30.0%
GTTTGAGCCATAAAACATTT+AGG + tig0031043:16217-16236 Msa1445340:CDS 30.0%
! TTGATTTCATTCAGCGTTTT+GGG + tig0031043:16247-16266 Msa1445340:CDS 30.0%
! AAAAGGTTCCAAATTTGCTT+AGG + tig0031043:16301-16320 Msa1445340:CDS 30.0%
! AAAGGTTCCAAATTTGCTTA+GGG + tig0031043:16302-16321 Msa1445340:CDS 30.0%
ATGCTATACATCAAAATCAG+AGG - tig0031043:16408-16427 Msa1445340:intergenic 30.0%
!! TCTGATTTTGATGTATAGCA+TGG + tig0031043:16407-16426 Msa1445340:CDS 30.0%
AAGCTGAAAAACTCTAAATC+GGG - tig0031043:16448-16467 Msa1445340:intergenic 30.0%
! GCATTATTGATAGCTTACAA+AGG + tig0031043:16579-16598 Msa1445340:CDS 30.0%
AAGAGAACGTAACAACTTGA+GGG - tig0031043:15506-15525 None:intergenic 35.0%
! TGGTTTCTTGGTTTGAAGAT+TGG - tig0031043:15594-15613 None:intergenic 35.0%
AAGGAGGTTAAACAGAAAAG+TGG - tig0031043:15614-15633 None:intergenic 35.0%
! ATCTGGAATTGGAATTAAGG+AGG - tig0031043:15630-15649 None:intergenic 35.0%
! TTACAGATAAGGGCTTTTCA+GGG - tig0031043:15705-15724 Msa1445340:intergenic 35.0%
! ATTACAGATAAGGGCTTTTC+AGG - tig0031043:15706-15725 Msa1445340:intergenic 35.0%
! GTATTTGAGTTCTCTGACAA+AGG - tig0031043:15777-15796 Msa1445340:intergenic 35.0%
! CTTTCAACAATTGGGTTTTC+AGG + tig0031043:15840-15859 Msa1445340:CDS 35.0%
AAACTAGCAGACAAAATGGT+TGG - tig0031043:15898-15917 Msa1445340:intergenic 35.0%
GTTCAAACTAGCAGACAAAA+TGG - tig0031043:15902-15921 Msa1445340:intergenic 35.0%
TCTTAATAGCTTCCACAGAT+GGG - tig0031043:15936-15955 Msa1445340:intergenic 35.0%
TTCTTAATAGCTTCCACAGA+TGG - tig0031043:15937-15956 Msa1445340:intergenic 35.0%
!!! ATTCAAGTTTTGAGCTACTG+TGG + tig0031043:15982-16001 Msa1445340:CDS 35.0%
CAATGTTGGCAACAAATGTT+TGG - tig0031043:16026-16045 Msa1445340:intergenic 35.0%
! ACTCTCTAAGAAAGCAATGT+TGG - tig0031043:16040-16059 Msa1445340:intergenic 35.0%
ATTGCTTTCTTAGAGAGTTG+TGG + tig0031043:16042-16061 Msa1445340:CDS 35.0%
! CTTGATTTCATTCAGCGTTT+TGG + tig0031043:16246-16265 Msa1445340:CDS 35.0%
GAGCTTGCAAATGTTCAAAA+AGG + tig0031043:16284-16303 Msa1445340:CDS 35.0%
TCTGATACCCTAAGCAAATT+TGG - tig0031043:16312-16331 Msa1445340:intergenic 35.0%
GGTATCAGAGAAGAAGTTAA+AGG + tig0031043:16323-16342 Msa1445340:CDS 35.0%
TCAGAGAAGAAGTTAAAGGT+TGG + tig0031043:16327-16346 Msa1445340:CDS 35.0%
!! CAAAGTCAGCATTGGTTAAT+CGG + tig0031043:16382-16401 Msa1445340:CDS 35.0%
!! GATTTTGATGTATAGCATGG+AGG + tig0031043:16410-16429 Msa1445340:CDS 35.0%
AGCTGAAAAACTCTAAATCG+GGG - tig0031043:16447-16466 Msa1445340:intergenic 35.0%
AAGAGAACGTAACAACTTGA+GGG - tig0031043:15506-15525 Msa1445340:intergenic 35.0%
! TGGTTTCTTGGTTTGAAGAT+TGG - tig0031043:15594-15613 Msa1445340:intergenic 35.0%
AAGGAGGTTAAACAGAAAAG+TGG - tig0031043:15614-15633 Msa1445340:intergenic 35.0%
! ATCTGGAATTGGAATTAAGG+AGG - tig0031043:15630-15649 Msa1445340:intergenic 35.0%
! TTACAGATAAGGGCTTTTCA+GGG - tig0031043:15705-15724 Msa1445340:intergenic 35.0%
! ATTACAGATAAGGGCTTTTC+AGG - tig0031043:15706-15725 Msa1445340:intergenic 35.0%
! GTATTTGAGTTCTCTGACAA+AGG - tig0031043:15777-15796 Msa1445340:intergenic 35.0%
! CTTTCAACAATTGGGTTTTC+AGG + tig0031043:15840-15859 Msa1445340:CDS 35.0%
AAACTAGCAGACAAAATGGT+TGG - tig0031043:15898-15917 Msa1445340:intergenic 35.0%
GTTCAAACTAGCAGACAAAA+TGG - tig0031043:15902-15921 Msa1445340:intergenic 35.0%
TCTTAATAGCTTCCACAGAT+GGG - tig0031043:15936-15955 Msa1445340:intergenic 35.0%
TTCTTAATAGCTTCCACAGA+TGG - tig0031043:15937-15956 Msa1445340:intergenic 35.0%
!!! ATTCAAGTTTTGAGCTACTG+TGG + tig0031043:15982-16001 Msa1445340:CDS 35.0%
CAATGTTGGCAACAAATGTT+TGG - tig0031043:16026-16045 Msa1445340:intergenic 35.0%
! ACTCTCTAAGAAAGCAATGT+TGG - tig0031043:16040-16059 Msa1445340:intergenic 35.0%
ATTGCTTTCTTAGAGAGTTG+TGG + tig0031043:16042-16061 Msa1445340:CDS 35.0%
! CTTGATTTCATTCAGCGTTT+TGG + tig0031043:16246-16265 Msa1445340:CDS 35.0%
GAGCTTGCAAATGTTCAAAA+AGG + tig0031043:16284-16303 Msa1445340:CDS 35.0%
TCTGATACCCTAAGCAAATT+TGG - tig0031043:16312-16331 Msa1445340:intergenic 35.0%
GGTATCAGAGAAGAAGTTAA+AGG + tig0031043:16323-16342 Msa1445340:CDS 35.0%
TCAGAGAAGAAGTTAAAGGT+TGG + tig0031043:16327-16346 Msa1445340:CDS 35.0%
!! CAAAGTCAGCATTGGTTAAT+CGG + tig0031043:16382-16401 Msa1445340:CDS 35.0%
!! GATTTTGATGTATAGCATGG+AGG + tig0031043:16410-16429 Msa1445340:CDS 35.0%
AGCTGAAAAACTCTAAATCG+GGG - tig0031043:16447-16466 Msa1445340:intergenic 35.0%
GAAGAGAACGTAACAACTTG+AGG - tig0031043:15507-15526 None:intergenic 40.0%
CGAAGTGAGTTAGAACTGAA+AGG - tig0031043:15529-15548 None:intergenic 40.0%
! TACAGATAAGGGCTTTTCAG+GGG - tig0031043:15704-15723 Msa1445340:intergenic 40.0%
TTGAGTTCTCTGACAAAGGA+TGG - tig0031043:15773-15792 Msa1445340:intergenic 40.0%
!! GGTTTTCAGGGTTCTCAATT+AGG + tig0031043:15853-15872 Msa1445340:CDS 40.0%
GCAACAAATGTTTGGTACAC+TGG - tig0031043:16018-16037 Msa1445340:intergenic 40.0%
TTAGAGAGTTGTGGCATTGT+TGG + tig0031043:16051-16070 Msa1445340:CDS 40.0%
TAGAGAGTTGTGGCATTGTT+GGG + tig0031043:16052-16071 Msa1445340:CDS 40.0%
!! CGATTAACCAATGCTGACTT+TGG - tig0031043:16384-16403 Msa1445340:intergenic 40.0%
TTTATCCGAGGACACATTCT+TGG + tig0031043:16521-16540 Msa1445340:CDS 40.0%
GAAGAGAACGTAACAACTTG+AGG - tig0031043:15507-15526 Msa1445340:intergenic 40.0%
CGAAGTGAGTTAGAACTGAA+AGG - tig0031043:15529-15548 Msa1445340:intergenic 40.0%
! TACAGATAAGGGCTTTTCAG+GGG - tig0031043:15704-15723 Msa1445340:intergenic 40.0%
TTGAGTTCTCTGACAAAGGA+TGG - tig0031043:15773-15792 Msa1445340:intergenic 40.0%
!! GGTTTTCAGGGTTCTCAATT+AGG + tig0031043:15853-15872 Msa1445340:CDS 40.0%
GCAACAAATGTTTGGTACAC+TGG - tig0031043:16018-16037 Msa1445340:intergenic 40.0%
TTAGAGAGTTGTGGCATTGT+TGG + tig0031043:16051-16070 Msa1445340:CDS 40.0%
TAGAGAGTTGTGGCATTGTT+GGG + tig0031043:16052-16071 Msa1445340:CDS 40.0%
!! CGATTAACCAATGCTGACTT+TGG - tig0031043:16384-16403 Msa1445340:intergenic 40.0%
TTTATCCGAGGACACATTCT+TGG + tig0031043:16521-16540 Msa1445340:CDS 40.0%
CAAAACATTGGTCCCATCTG+TGG + tig0031043:15921-15940 Msa1445340:CDS 45.0%
!!! AAGTTTTGAGCTACTGTGGC+TGG + tig0031043:15986-16005 Msa1445340:CDS 45.0%
!!! AGTTTTGAGCTACTGTGGCT+GGG + tig0031043:15987-16006 Msa1445340:CDS 45.0%
AGAGAGTTGTGGCATTGTTG+GGG + tig0031043:16053-16072 Msa1445340:CDS 45.0%
TATGCTGCCAAAGTCAGCAT+TGG + tig0031043:16374-16393 Msa1445340:CDS 45.0%
CTTGTCCAAGAATGTGTCCT+CGG - tig0031043:16529-16548 Msa1445340:intergenic 45.0%
CAAAACATTGGTCCCATCTG+TGG + tig0031043:15921-15940 Msa1445340:CDS 45.0%
!!! AAGTTTTGAGCTACTGTGGC+TGG + tig0031043:15986-16005 Msa1445340:CDS 45.0%
!!! AGTTTTGAGCTACTGTGGCT+GGG + tig0031043:15987-16006 Msa1445340:CDS 45.0%
AGAGAGTTGTGGCATTGTTG+GGG + tig0031043:16053-16072 Msa1445340:CDS 45.0%
TATGCTGCCAAAGTCAGCAT+TGG + tig0031043:16374-16393 Msa1445340:CDS 45.0%
CTTGTCCAAGAATGTGTCCT+CGG - tig0031043:16529-16548 Msa1445340:intergenic 45.0%
TTGTGGCATTGTTGGGGATC+AGG + tig0031043:16059-16078 Msa1445340:CDS 50.0%
TTGTGGCATTGTTGGGGATC+AGG + tig0031043:16059-16078 Msa1445340:CDS 50.0%
Chromosome Type Strat End Strand Name
tig0031043 gene 15496 16632 15496 ID=Msa1445340;Name=Msa1445340
tig0031043 mRNA 15496 16632 15496 ID=Msa1445340-mRNA-1;Parent=Msa1445340;Name=Msa1445340-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|-1|0|1|-1|1|1|0|378
tig0031043 exon 15496 16632 15496 ID=Msa1445340-mRNA-1:exon:14943;Parent=Msa1445340-mRNA-1
tig0031043 CDS 15496 16632 15496 ID=Msa1445340-mRNA-1:cds;Parent=Msa1445340-mRNA-1
Gene Sequence

>Msa1445340

ATGCAATCCCTCAAGTTGTTACGTTCTCTTCCTTTCAGTTCTAACTCACTTCGTTCTTTTCTATGTTCATTTTCTTCTTTATCAACCCCAATTAACCAATCTTCAAACCAAGAAACCACTTTTCTGTTTAACCTCCTTAATTCCAATTCCAGATTACATAAATCTGAATCTATCTATGTATCTAAACTTGTTTCAGGAATCACTTCCCCTGAAAAGCCCTTATCTGTAATCAACTTTTTCAAACAAATTGGATTTTCTCAAACTCAGATACACTCCATCCTTTGTCAGAGAACTCAAATACTCTTTTCAAATGTTCATAAAACCCTTAAACCTAAAGTTGAATTCTTTCAACAATTGGGTTTTCAGGGTTCTCAATTAGGTCTTTTTCTTTCTAAGAATCCAACCATTTTGTCTGCTAGTTTGAACAAAACATTGGTCCCATCTGTGGAAGCTATTAAGAAAATTGTAGGGAATGAGAAAGATCTTATTCAAGTTTTGAGCTACTGTGGCTGGGTACTACCAGTGTACCAAACATTTGTTGCCAACATTGCTTTCTTAGAGAGTTGTGGCATTGTTGGGGATCAGGTTTTGATTTTAATCAAACATTCAAGACTTTTGACTGCACCACAATCTCGTATTAGAAACTATGTTTTGCAAGCTGAAAAATTGGGTTTCCATCAAAATTCAAGAATGCTTGTTCATGGGCTTCATACATTATGTTGTTTGAGCCATAAAACATTTAGGAAAAAGCTTGATTTCATTCAGCGTTTTGGGTTTTCTAAAGATGAGAGCTTGCAAATGTTCAAAAAGGTTCCAAATTTGCTTAGGGTATCAGAGAAGAAGTTAAAGGTTGGAATTGAGTTCTTCTTAGATACAGTTATGCTGCCAAAGTCAGCATTGGTTAATCGGCCTCTGATTTTGATGTATAGCATGGAGGATCGAGTGTTTCCCCGATTTAGAGTTTTTCAGCTTTTGAAATCACAAAATCTATGTAAGAAGGTTCCAAGCTTTCTTTATGTGTTAAATTTATCCGAGGACACATTCTTGGACAAGTTTATACCAAAGTTTAAAGAAAATGCAGAGGCATTATTGATAGCTTACAAAGGGGCGTTGTCTATAACCGCAATGATCTCTTGA

Protein sequence

>Msa1445340

MQSLKLLRSLPFSSNSLRSFLCSFSSLSTPINQSSNQETTFLFNLLNSNSRLHKSESIYVSKLVSGITSPEKPLSVINFFKQIGFSQTQIHSILCQRTQILFSNVHKTLKPKVEFFQQLGFQGSQLGLFLSKNPTILSASLNKTLVPSVEAIKKIVGNEKDLIQVLSYCGWVLPVYQTFVANIAFLESCGIVGDQVLILIKHSRLLTAPQSRIRNYVLQAEKLGFHQNSRMLVHGLHTLCCLSHKTFRKKLDFIQRFGFSKDESLQMFKKVPNLLRVSEKKLKVGIEFFLDTVMLPKSALVNRPLILMYSMEDRVFPRFRVFQLLKSQNLCKKVPSFLYVLNLSEDTFLDKFIPKFKENAEALLIAYKGALSITAMIS*