Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445340 | A0A072TSZ5 | 80.952 | 378 | 70 | 2 | 1 | 376 | 17 | 394 | 0.0 | 576 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1445340 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445340 | MtrunA17_Chr8g0377801 | 80.952 | 378 | 70 | 2 | 1 | 376 | 17 | 394 | 0.0 | 576 |
| Msa1445340 | MtrunA17_Chr8g0377781 | 74.531 | 373 | 91 | 2 | 1 | 369 | 1 | 373 | 0.0 | 530 |
| Msa1445340 | MtrunA17_Chr2g0296191 | 27.704 | 379 | 256 | 5 | 1 | 368 | 137 | 508 | 3.21e-37 | 143 |
| Msa1445340 | MtrunA17_Chr2g0296191 | 30.363 | 303 | 206 | 3 | 69 | 367 | 693 | 994 | 5.72e-33 | 130 |
| Msa1445340 | MtrunA17_Chr2g0296711 | 29.431 | 299 | 208 | 2 | 71 | 367 | 86 | 383 | 1.41e-36 | 137 |
| Msa1445340 | MtrunA17_Chr2g0295731 | 26.667 | 300 | 218 | 2 | 69 | 368 | 78 | 375 | 4.12e-35 | 132 |
| Msa1445340 | MtrunA17_Chr4g0067141 | 28.614 | 339 | 233 | 4 | 34 | 369 | 39 | 371 | 4.71e-35 | 132 |
| Msa1445340 | MtrunA17_Chr2g0296721 | 28.247 | 308 | 217 | 3 | 69 | 374 | 81 | 386 | 5.81e-35 | 132 |
| Msa1445340 | MtrunA17_Chr2g0295761 | 27.893 | 337 | 235 | 5 | 34 | 367 | 55 | 386 | 8.41e-35 | 132 |
| Msa1445340 | MtrunA17_Chr2g0286191 | 29.254 | 335 | 228 | 7 | 37 | 368 | 29 | 357 | 1.15e-34 | 131 |
| Msa1445340 | MtrunA17_Chr2g0296741 | 27.273 | 308 | 221 | 2 | 69 | 374 | 101 | 407 | 1.37e-33 | 129 |
| Msa1445340 | MtrunA17_Chr2g0315731 | 29.431 | 299 | 208 | 2 | 71 | 367 | 103 | 400 | 2.03e-33 | 129 |
| Msa1445340 | MtrunA17_Chr2g0296151 | 29.375 | 320 | 220 | 3 | 59 | 374 | 57 | 374 | 4.94e-33 | 127 |
| Msa1445340 | MtrunA17_Chr2g0296171 | 29.934 | 304 | 208 | 3 | 69 | 368 | 91 | 393 | 9.19e-33 | 127 |
| Msa1445340 | MtrunA17_Chr2g0296221 | 28.169 | 355 | 249 | 4 | 19 | 368 | 59 | 412 | 1.67e-32 | 126 |
| Msa1445340 | MtrunA17_Chr2g0296291 | 28.070 | 342 | 206 | 4 | 72 | 374 | 64 | 404 | 3.76e-31 | 122 |
| Msa1445340 | MtrunA17_Chr2g0296121 | 27.273 | 352 | 247 | 4 | 26 | 373 | 113 | 459 | 9.32e-31 | 122 |
| Msa1445340 | MtrunA17_Chr4g0001831 | 27.072 | 362 | 234 | 9 | 23 | 368 | 21 | 368 | 3.90e-30 | 119 |
| Msa1445340 | MtrunA17_Chr2g0296251 | 27.003 | 337 | 208 | 5 | 69 | 368 | 61 | 396 | 3.92e-30 | 119 |
| Msa1445340 | MtrunA17_Chr2g0296231 | 28.904 | 301 | 209 | 4 | 69 | 367 | 80 | 377 | 1.39e-28 | 115 |
| Msa1445340 | MtrunA17_Chr4g0067671 | 25.071 | 351 | 256 | 5 | 7 | 353 | 8 | 355 | 2.26e-28 | 114 |
| Msa1445340 | MtrunA17_Chr4g0067121 | 25.287 | 348 | 244 | 5 | 34 | 374 | 46 | 384 | 4.70e-28 | 113 |
| Msa1445340 | MtrunA17_Chr2g0296111 | 28.617 | 311 | 207 | 6 | 71 | 374 | 72 | 374 | 3.77e-27 | 110 |
| Msa1445340 | MtrunA17_Chr2g0296301 | 22.924 | 301 | 228 | 3 | 69 | 367 | 65 | 363 | 1.77e-25 | 106 |
| Msa1445340 | MtrunA17_Chr2g0295741 | 25.155 | 322 | 231 | 5 | 59 | 374 | 63 | 380 | 1.70e-24 | 103 |
| Msa1445340 | MtrunA17_Chr2g0296181 | 26.821 | 302 | 191 | 4 | 69 | 368 | 82 | 355 | 3.11e-23 | 100 |
| Msa1445340 | MtrunA17_Chr2g0296211 | 26.214 | 206 | 137 | 1 | 183 | 373 | 156 | 361 | 2.28e-17 | 82.8 |
| Msa1445340 | MtrunA17_Chr2g0296701 | 28.947 | 152 | 108 | 0 | 223 | 374 | 9 | 160 | 8.46e-16 | 74.7 |
| Msa1445340 | MtrunA17_Chr2g0296551 | 30.263 | 152 | 106 | 0 | 223 | 374 | 37 | 188 | 2.83e-15 | 73.9 |
| Msa1445340 | MtrunA17_Chr2g0296131 | 27.848 | 158 | 114 | 0 | 217 | 374 | 9 | 166 | 1.62e-14 | 71.2 |
| Msa1445340 | MtrunA17_Chr2g0296751 | 30.894 | 123 | 85 | 0 | 242 | 364 | 1 | 123 | 2.38e-14 | 70.5 |
| Msa1445340 | MtrunA17_Chr2g0286221 | 26.286 | 175 | 124 | 4 | 201 | 374 | 3 | 173 | 1.42e-13 | 68.6 |
| Msa1445340 | MtrunA17_Chr2g0295711 | 32.456 | 114 | 73 | 1 | 59 | 168 | 63 | 176 | 1.91e-12 | 65.9 |
| Msa1445340 | MtrunA17_Chr2g0296161 | 26.282 | 156 | 115 | 0 | 223 | 378 | 11 | 166 | 2.00e-11 | 62.0 |
| Msa1445340 | MtrunA17_Chr2g0295751 | 31.858 | 113 | 73 | 1 | 59 | 167 | 64 | 176 | 5.03e-11 | 63.9 |
| Msa1445340 | MtrunA17_Chr8g0339041 | 30.667 | 150 | 99 | 3 | 222 | 368 | 201 | 348 | 6.30e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445340 | AT5G64950.1 | 38.592 | 355 | 203 | 6 | 24 | 368 | 27 | 376 | 4.29e-73 | 233 |
| Msa1445340 | AT5G07900.1 | 28.406 | 345 | 240 | 5 | 30 | 369 | 59 | 401 | 4.98e-43 | 154 |
| Msa1445340 | AT1G21150.3 | 28.280 | 343 | 235 | 6 | 27 | 364 | 11 | 347 | 5.97e-36 | 134 |
| Msa1445340 | AT1G21150.1 | 29.430 | 316 | 212 | 6 | 54 | 364 | 74 | 383 | 1.92e-35 | 134 |
| Msa1445340 | AT1G21150.2 | 29.430 | 316 | 212 | 6 | 54 | 364 | 138 | 447 | 6.14e-35 | 134 |
| Msa1445340 | AT1G62010.1 | 26.062 | 353 | 217 | 6 | 62 | 374 | 59 | 407 | 1.70e-24 | 104 |
| Msa1445340 | AT1G61990.2 | 24.927 | 341 | 205 | 6 | 73 | 372 | 84 | 414 | 2.02e-24 | 103 |
| Msa1445340 | AT1G61990.1 | 24.927 | 341 | 205 | 6 | 73 | 372 | 84 | 414 | 2.02e-24 | 103 |
| Msa1445340 | AT1G62120.1 | 24.691 | 405 | 249 | 7 | 19 | 374 | 32 | 429 | 7.85e-22 | 96.7 |
| Msa1445340 | AT1G61970.2 | 24.798 | 371 | 232 | 7 | 22 | 353 | 37 | 399 | 8.89e-22 | 96.7 |
| Msa1445340 | AT1G61970.7 | 24.798 | 371 | 232 | 7 | 22 | 353 | 37 | 399 | 8.89e-22 | 96.7 |
| Msa1445340 | AT1G61970.6 | 24.798 | 371 | 232 | 7 | 22 | 353 | 37 | 399 | 8.89e-22 | 96.7 |
| Msa1445340 | AT1G61970.3 | 24.798 | 371 | 232 | 7 | 22 | 353 | 37 | 399 | 8.89e-22 | 96.7 |
| Msa1445340 | AT1G61970.5 | 24.798 | 371 | 232 | 7 | 22 | 353 | 37 | 399 | 8.89e-22 | 96.7 |
| Msa1445340 | AT1G61970.4 | 24.798 | 371 | 232 | 7 | 22 | 353 | 37 | 399 | 8.89e-22 | 96.7 |
| Msa1445340 | AT1G61970.1 | 24.798 | 371 | 232 | 7 | 22 | 353 | 37 | 399 | 8.89e-22 | 96.7 |
| Msa1445340 | AT1G61980.3 | 24.022 | 358 | 219 | 4 | 53 | 358 | 48 | 404 | 1.88e-20 | 92.8 |
| Msa1445340 | AT1G61980.2 | 24.022 | 358 | 219 | 4 | 53 | 358 | 48 | 404 | 1.88e-20 | 92.8 |
| Msa1445340 | AT1G61980.1 | 24.022 | 358 | 219 | 4 | 53 | 358 | 48 | 404 | 1.88e-20 | 92.8 |
| Msa1445340 | AT3G46950.1 | 26.538 | 260 | 183 | 3 | 23 | 282 | 37 | 288 | 2.34e-16 | 80.9 |
| Msa1445340 | AT1G56380.1 | 22.714 | 339 | 220 | 8 | 59 | 355 | 32 | 370 | 6.99e-15 | 75.9 |
| Msa1445340 | AT1G56380.2 | 22.515 | 342 | 223 | 8 | 59 | 358 | 43 | 384 | 7.45e-15 | 75.9 |
| Msa1445340 | AT1G62085.1 | 25.000 | 280 | 184 | 6 | 27 | 282 | 20 | 297 | 1.37e-13 | 72.4 |
| Msa1445340 | AT1G62085.2 | 25.000 | 280 | 184 | 6 | 27 | 282 | 20 | 297 | 1.37e-13 | 72.4 |
| Msa1445340 | AT1G61960.1 | 24.000 | 250 | 185 | 2 | 33 | 282 | 49 | 293 | 1.40e-13 | 72.4 |
| Msa1445340 | AT1G61960.1 | 26.374 | 182 | 130 | 2 | 192 | 369 | 272 | 453 | 6.27e-11 | 63.9 |
| Msa1445340 | AT1G62110.1 | 23.729 | 295 | 205 | 5 | 4 | 287 | 14 | 299 | 3.15e-13 | 71.2 |
| Msa1445340 | AT5G23930.1 | 26.007 | 273 | 181 | 4 | 19 | 282 | 30 | 290 | 1.55e-12 | 68.9 |
| Msa1445340 | AT1G62150.1 | 22.925 | 253 | 185 | 3 | 33 | 282 | 55 | 300 | 7.12e-12 | 67.0 |
Find 63 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATTCAACTTTAGGTTTA+AGG | 0.104983 | tig0031043:-15819 | Msa1445340:intergenic |
| TCTGATACCCTAAGCAAATT+TGG | 0.167535 | tig0031043:-16309 | Msa1445340:intergenic |
| TATGTATCTAAACTTGTTTC+AGG | 0.182146 | tig0031043:+15670 | Msa1445340:CDS |
| TGGTTTGAAGATTGGTTAAT+TGG | 0.193531 | tig0031043:-15583 | Msa1445340:intergenic |
| CTTGATTTCATTCAGCGTTT+TGG | 0.212498 | tig0031043:+16246 | Msa1445340:CDS |
| GTTTGAGCCATAAAACATTT+AGG | 0.239728 | tig0031043:+16217 | Msa1445340:CDS |
| GGTATCAGAGAAGAAGTTAA+AGG | 0.274790 | tig0031043:+16323 | Msa1445340:CDS |
| AGTTGAATTCTTTCAACAAT+TGG | 0.279256 | tig0031043:+15831 | Msa1445340:CDS |
| GGTTTGAAGATTGGTTAATT+GGG | 0.281008 | tig0031043:-15582 | Msa1445340:intergenic |
| GTAATCTGGAATTGGAATTA+AGG | 0.287638 | tig0031043:-15630 | Msa1445340:intergenic |
| TAAACAGAAAAGTGGTTTCT+TGG | 0.299414 | tig0031043:-15603 | Msa1445340:intergenic |
| GTTCAAACTAGCAGACAAAA+TGG | 0.299580 | tig0031043:-15899 | Msa1445340:intergenic |
| TAGAGAGTTGTGGCATTGTT+GGG | 0.299637 | tig0031043:+16052 | Msa1445340:CDS |
| GAGCTTGCAAATGTTCAAAA+AGG | 0.301950 | tig0031043:+16284 | Msa1445340:CDS |
| AGATTCAGATTTATGTAATC+TGG | 0.309227 | tig0031043:-15644 | Msa1445340:intergenic |
| TGTTGAAAGAATTCAACTTT+AGG | 0.311645 | tig0031043:-15826 | Msa1445340:intergenic |
| TTTATCCGAGGACACATTCT+TGG | 0.328463 | tig0031043:+16521 | Msa1445340:CDS |
| TTGTGGCATTGTTGGGGATC+AGG | 0.331357 | tig0031043:+16059 | Msa1445340:CDS |
| GAATTCAACTTTAGGTTTAA+GGG | 0.331941 | tig0031043:-15818 | Msa1445340:intergenic |
| AGATTTATGTAATCTGGAAT+TGG | 0.334603 | tig0031043:-15638 | Msa1445340:intergenic |
| AATTCAAGAATGCTTGTTCA+TGG | 0.351341 | tig0031043:+16177 | Msa1445340:CDS |
| AAAAGGTTCCAAATTTGCTT+AGG | 0.354562 | tig0031043:+16301 | Msa1445340:CDS |
| CAAAGTCAGCATTGGTTAAT+CGG | 0.362750 | tig0031043:+16382 | Msa1445340:CDS |
| GTTGAATTCTTTCAACAATT+GGG | 0.376074 | tig0031043:+15832 | Msa1445340:CDS |
| CAATGTTGGCAACAAATGTT+TGG | 0.383801 | tig0031043:-16023 | Msa1445340:intergenic |
| TGGTTTCTTGGTTTGAAGAT+TGG | 0.387327 | tig0031043:-15591 | Msa1445340:intergenic |
| CGATTAACCAATGCTGACTT+TGG | 0.389786 | tig0031043:-16381 | Msa1445340:intergenic |
| TTAGAGAGTTGTGGCATTGT+TGG | 0.401579 | tig0031043:+16051 | Msa1445340:CDS |
| GAAGCTATTAAGAAAATTGT+AGG | 0.405231 | tig0031043:+15943 | Msa1445340:CDS |
| AAAGGTTCCAAATTTGCTTA+GGG | 0.440166 | tig0031043:+16302 | Msa1445340:CDS |
| GTATTTGAGTTCTCTGACAA+AGG | 0.462198 | tig0031043:-15774 | Msa1445340:intergenic |
| TTTAACACATAAAGAAAGCT+TGG | 0.468094 | tig0031043:-16498 | Msa1445340:intergenic |
| AAACTAGCAGACAAAATGGT+TGG | 0.477531 | tig0031043:-15895 | Msa1445340:intergenic |
| TTCTTAATAGCTTCCACAGA+TGG | 0.480816 | tig0031043:-15934 | Msa1445340:intergenic |
| TCAGAGAAGAAGTTAAAGGT+TGG | 0.481727 | tig0031043:+16327 | Msa1445340:CDS |
| ATTCAAGAATGCTTGTTCAT+GGG | 0.496020 | tig0031043:+16178 | Msa1445340:CDS |
| TTGAGTTCTCTGACAAAGGA+TGG | 0.502013 | tig0031043:-15770 | Msa1445340:intergenic |
| AAGGAGGTTAAACAGAAAAG+TGG | 0.503037 | tig0031043:-15611 | Msa1445340:intergenic |
| GTTTGAAGATTGGTTAATTG+GGG | 0.503121 | tig0031043:-15581 | Msa1445340:intergenic |
| CATTATTGATAGCTTACAAA+GGG | 0.508791 | tig0031043:+16580 | Msa1445340:CDS |
| ATCACAAAATCTATGTAAGA+AGG | 0.510006 | tig0031043:+16473 | Msa1445340:CDS |
| GCAACAAATGTTTGGTACAC+TGG | 0.517326 | tig0031043:-16015 | Msa1445340:intergenic |
| ACTCTCTAAGAAAGCAATGT+TGG | 0.518565 | tig0031043:-16037 | Msa1445340:intergenic |
| AGAGAGTTGTGGCATTGTTG+GGG | 0.519144 | tig0031043:+16053 | Msa1445340:CDS |
| AAGAGAACGTAACAACTTGA+GGG | 0.534047 | tig0031043:-15503 | Msa1445340:intergenic |
| CGAAGTGAGTTAGAACTGAA+AGG | 0.549827 | tig0031043:-15526 | Msa1445340:intergenic |
| TCTTAATAGCTTCCACAGAT+GGG | 0.550512 | tig0031043:-15933 | Msa1445340:intergenic |
| CTTGTCCAAGAATGTGTCCT+CGG | 0.551926 | tig0031043:-16526 | Msa1445340:intergenic |
| GAAGAGAACGTAACAACTTG+AGG | 0.552986 | tig0031043:-15504 | Msa1445340:intergenic |
| ATTGCTTTCTTAGAGAGTTG+TGG | 0.553536 | tig0031043:+16042 | Msa1445340:CDS |
| ATCTGGAATTGGAATTAAGG+AGG | 0.564393 | tig0031043:-15627 | Msa1445340:intergenic |
| TGCTAGTTTGAACAAAACAT+TGG | 0.566720 | tig0031043:+15909 | Msa1445340:CDS |
| CAAAACATTGGTCCCATCTG+TGG | 0.566916 | tig0031043:+15921 | Msa1445340:CDS |
| TATGCTGCCAAAGTCAGCAT+TGG | 0.579046 | tig0031043:+16374 | Msa1445340:CDS |
| AAGCTATTAAGAAAATTGTA+GGG | 0.601947 | tig0031043:+15944 | Msa1445340:CDS |
| TTATGTGTTAAATTTATCCG+AGG | 0.613152 | tig0031043:+16509 | Msa1445340:CDS |
| TAGTTTCTAATACGAGATTG+TGG | 0.627705 | tig0031043:-16120 | Msa1445340:intergenic |
| GCATTATTGATAGCTTACAA+AGG | 0.630637 | tig0031043:+16579 | Msa1445340:CDS |
| ATGCTATACATCAAAATCAG+AGG | 0.630674 | tig0031043:-16405 | Msa1445340:intergenic |
| AACAACTTGAGGGATTGCAT+TGG | 0.639420 | tig0031043:-15493 | Msa1445340:intergenic |
| AAAGTTTAAAGAAAATGCAG+AGG | 0.668498 | tig0031043:+16557 | Msa1445340:CDS |
| ATTATTGATAGCTTACAAAG+GGG | 0.710219 | tig0031043:+16581 | Msa1445340:CDS |
| AGAGCGTCAAGAGATCATTG+CGG | 0.796784 | tig0031043:-16616 | Msa1445330:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGTTGATTACAGATAA+GGG | - | tig0031043:15715-15734 | Msa1445340:intergenic | 20.0% |
| !!! | ATCAACTTTTTCAAACAAAT+TGG | + | tig0031043:15724-15743 | Msa1445340:CDS | 20.0% |
| !! | AAGCTATTAAGAAAATTGTA+GGG | + | tig0031043:15944-15963 | Msa1445340:CDS | 20.0% |
| !!! | AAAAAGTTGATTACAGATAA+GGG | - | tig0031043:15715-15734 | Msa1445340:intergenic | 20.0% |
| !!! | ATCAACTTTTTCAAACAAAT+TGG | + | tig0031043:15724-15743 | Msa1445340:CDS | 20.0% |
| !! | AAGCTATTAAGAAAATTGTA+GGG | + | tig0031043:15944-15963 | Msa1445340:CDS | 20.0% |
| !! | AGATTTATGTAATCTGGAAT+TGG | - | tig0031043:15641-15660 | None:intergenic | 25.0% |
| ! | AGATTCAGATTTATGTAATC+TGG | - | tig0031043:15647-15666 | None:intergenic | 25.0% |
| !! | TATGTATCTAAACTTGTTTC+AGG | + | tig0031043:15670-15689 | Msa1445340:CDS | 25.0% |
| !! | GAAAAAGTTGATTACAGATA+AGG | - | tig0031043:15716-15735 | Msa1445340:intergenic | 25.0% |
| !! | GAATTCAACTTTAGGTTTAA+GGG | - | tig0031043:15821-15840 | Msa1445340:intergenic | 25.0% |
| !! | AGAATTCAACTTTAGGTTTA+AGG | - | tig0031043:15822-15841 | Msa1445340:intergenic | 25.0% |
| ! | TGTTGAAAGAATTCAACTTT+AGG | - | tig0031043:15829-15848 | Msa1445340:intergenic | 25.0% |
| ! | AGTTGAATTCTTTCAACAAT+TGG | + | tig0031043:15831-15850 | Msa1445340:CDS | 25.0% |
| ! | GTTGAATTCTTTCAACAATT+GGG | + | tig0031043:15832-15851 | Msa1445340:CDS | 25.0% |
| ! | GAAGCTATTAAGAAAATTGT+AGG | + | tig0031043:15943-15962 | Msa1445340:CDS | 25.0% |
| !!! | GCTTTTTCCTAAATGTTTTA+TGG | - | tig0031043:16227-16246 | Msa1445340:intergenic | 25.0% |
| ! | AAAGCTGAAAAACTCTAAAT+CGG | - | tig0031043:16449-16468 | Msa1445340:intergenic | 25.0% |
| ! | ATCACAAAATCTATGTAAGA+AGG | + | tig0031043:16473-16492 | Msa1445340:CDS | 25.0% |
| ! | TTTAACACATAAAGAAAGCT+TGG | - | tig0031043:16501-16520 | Msa1445340:intergenic | 25.0% |
| ! | TTATGTGTTAAATTTATCCG+AGG | + | tig0031043:16509-16528 | Msa1445340:CDS | 25.0% |
| !! | TCTGCATTTTCTTTAAACTT+TGG | - | tig0031043:16558-16577 | Msa1445340:intergenic | 25.0% |
| ! | AAAGTTTAAAGAAAATGCAG+AGG | + | tig0031043:16557-16576 | Msa1445340:CDS | 25.0% |
| !! | CATTATTGATAGCTTACAAA+GGG | + | tig0031043:16580-16599 | Msa1445340:CDS | 25.0% |
| !! | ATTATTGATAGCTTACAAAG+GGG | + | tig0031043:16581-16600 | Msa1445340:CDS | 25.0% |
| !! | AGATTTATGTAATCTGGAAT+TGG | - | tig0031043:15641-15660 | Msa1445340:intergenic | 25.0% |
| ! | AGATTCAGATTTATGTAATC+TGG | - | tig0031043:15647-15666 | Msa1445340:intergenic | 25.0% |
| !! | TATGTATCTAAACTTGTTTC+AGG | + | tig0031043:15670-15689 | Msa1445340:CDS | 25.0% |
| !! | GAAAAAGTTGATTACAGATA+AGG | - | tig0031043:15716-15735 | Msa1445340:intergenic | 25.0% |
| !! | GAATTCAACTTTAGGTTTAA+GGG | - | tig0031043:15821-15840 | Msa1445340:intergenic | 25.0% |
| !! | AGAATTCAACTTTAGGTTTA+AGG | - | tig0031043:15822-15841 | Msa1445340:intergenic | 25.0% |
| ! | TGTTGAAAGAATTCAACTTT+AGG | - | tig0031043:15829-15848 | Msa1445340:intergenic | 25.0% |
| ! | AGTTGAATTCTTTCAACAAT+TGG | + | tig0031043:15831-15850 | Msa1445340:CDS | 25.0% |
| ! | GTTGAATTCTTTCAACAATT+GGG | + | tig0031043:15832-15851 | Msa1445340:CDS | 25.0% |
| ! | GAAGCTATTAAGAAAATTGT+AGG | + | tig0031043:15943-15962 | Msa1445340:CDS | 25.0% |
| !!! | GCTTTTTCCTAAATGTTTTA+TGG | - | tig0031043:16227-16246 | Msa1445340:intergenic | 25.0% |
| ! | AAAGCTGAAAAACTCTAAAT+CGG | - | tig0031043:16449-16468 | Msa1445340:intergenic | 25.0% |
| ! | ATCACAAAATCTATGTAAGA+AGG | + | tig0031043:16473-16492 | Msa1445340:CDS | 25.0% |
| ! | TTTAACACATAAAGAAAGCT+TGG | - | tig0031043:16501-16520 | Msa1445340:intergenic | 25.0% |
| ! | TTATGTGTTAAATTTATCCG+AGG | + | tig0031043:16509-16528 | Msa1445340:CDS | 25.0% |
| !! | TCTGCATTTTCTTTAAACTT+TGG | - | tig0031043:16558-16577 | Msa1445340:intergenic | 25.0% |
| ! | AAAGTTTAAAGAAAATGCAG+AGG | + | tig0031043:16557-16576 | Msa1445340:CDS | 25.0% |
| !! | CATTATTGATAGCTTACAAA+GGG | + | tig0031043:16580-16599 | Msa1445340:CDS | 25.0% |
| !! | ATTATTGATAGCTTACAAAG+GGG | + | tig0031043:16581-16600 | Msa1445340:CDS | 25.0% |
| ! | GTTTGAAGATTGGTTAATTG+GGG | - | tig0031043:15584-15603 | None:intergenic | 30.0% |
| ! | GGTTTGAAGATTGGTTAATT+GGG | - | tig0031043:15585-15604 | None:intergenic | 30.0% |
| ! | TGGTTTGAAGATTGGTTAAT+TGG | - | tig0031043:15586-15605 | None:intergenic | 30.0% |
| TAAACAGAAAAGTGGTTTCT+TGG | - | tig0031043:15606-15625 | None:intergenic | 30.0% | |
| ! | GTAATCTGGAATTGGAATTA+AGG | - | tig0031043:15633-15652 | None:intergenic | 30.0% |
| ! | TTTCAACAATTGGGTTTTCA+GGG | + | tig0031043:15841-15860 | Msa1445340:CDS | 30.0% |
| ! | TGCTAGTTTGAACAAAACAT+TGG | + | tig0031043:15909-15928 | Msa1445340:CDS | 30.0% |
| TAGTTTCTAATACGAGATTG+TGG | - | tig0031043:16123-16142 | Msa1445340:intergenic | 30.0% | |
| ! | TGTTTTGCAAGCTGAAAAAT+TGG | + | tig0031043:16143-16162 | Msa1445340:CDS | 30.0% |
| ! | GTTTTGCAAGCTGAAAAATT+GGG | + | tig0031043:16144-16163 | Msa1445340:CDS | 30.0% |
| ! | CAAGCATTCTTGAATTTTGA+TGG | - | tig0031043:16173-16192 | Msa1445340:intergenic | 30.0% |
| AATTCAAGAATGCTTGTTCA+TGG | + | tig0031043:16177-16196 | Msa1445340:CDS | 30.0% | |
| ATTCAAGAATGCTTGTTCAT+GGG | + | tig0031043:16178-16197 | Msa1445340:CDS | 30.0% | |
| GTTTGAGCCATAAAACATTT+AGG | + | tig0031043:16217-16236 | Msa1445340:CDS | 30.0% | |
| ! | TTGATTTCATTCAGCGTTTT+GGG | + | tig0031043:16247-16266 | Msa1445340:CDS | 30.0% |
| ! | AAAAGGTTCCAAATTTGCTT+AGG | + | tig0031043:16301-16320 | Msa1445340:CDS | 30.0% |
| ! | AAAGGTTCCAAATTTGCTTA+GGG | + | tig0031043:16302-16321 | Msa1445340:CDS | 30.0% |
| ATGCTATACATCAAAATCAG+AGG | - | tig0031043:16408-16427 | Msa1445340:intergenic | 30.0% | |
| !! | TCTGATTTTGATGTATAGCA+TGG | + | tig0031043:16407-16426 | Msa1445340:CDS | 30.0% |
| AAGCTGAAAAACTCTAAATC+GGG | - | tig0031043:16448-16467 | Msa1445340:intergenic | 30.0% | |
| ! | GCATTATTGATAGCTTACAA+AGG | + | tig0031043:16579-16598 | Msa1445340:CDS | 30.0% |
| ! | GTTTGAAGATTGGTTAATTG+GGG | - | tig0031043:15584-15603 | Msa1445340:intergenic | 30.0% |
| ! | GGTTTGAAGATTGGTTAATT+GGG | - | tig0031043:15585-15604 | Msa1445340:intergenic | 30.0% |
| ! | TGGTTTGAAGATTGGTTAAT+TGG | - | tig0031043:15586-15605 | Msa1445340:intergenic | 30.0% |
| TAAACAGAAAAGTGGTTTCT+TGG | - | tig0031043:15606-15625 | Msa1445340:intergenic | 30.0% | |
| ! | GTAATCTGGAATTGGAATTA+AGG | - | tig0031043:15633-15652 | Msa1445340:intergenic | 30.0% |
| ! | TTTCAACAATTGGGTTTTCA+GGG | + | tig0031043:15841-15860 | Msa1445340:CDS | 30.0% |
| ! | TGCTAGTTTGAACAAAACAT+TGG | + | tig0031043:15909-15928 | Msa1445340:CDS | 30.0% |
| TAGTTTCTAATACGAGATTG+TGG | - | tig0031043:16123-16142 | Msa1445340:intergenic | 30.0% | |
| ! | TGTTTTGCAAGCTGAAAAAT+TGG | + | tig0031043:16143-16162 | Msa1445340:CDS | 30.0% |
| ! | GTTTTGCAAGCTGAAAAATT+GGG | + | tig0031043:16144-16163 | Msa1445340:CDS | 30.0% |
| ! | CAAGCATTCTTGAATTTTGA+TGG | - | tig0031043:16173-16192 | Msa1445340:intergenic | 30.0% |
| AATTCAAGAATGCTTGTTCA+TGG | + | tig0031043:16177-16196 | Msa1445340:CDS | 30.0% | |
| ATTCAAGAATGCTTGTTCAT+GGG | + | tig0031043:16178-16197 | Msa1445340:CDS | 30.0% | |
| GTTTGAGCCATAAAACATTT+AGG | + | tig0031043:16217-16236 | Msa1445340:CDS | 30.0% | |
| ! | TTGATTTCATTCAGCGTTTT+GGG | + | tig0031043:16247-16266 | Msa1445340:CDS | 30.0% |
| ! | AAAAGGTTCCAAATTTGCTT+AGG | + | tig0031043:16301-16320 | Msa1445340:CDS | 30.0% |
| ! | AAAGGTTCCAAATTTGCTTA+GGG | + | tig0031043:16302-16321 | Msa1445340:CDS | 30.0% |
| ATGCTATACATCAAAATCAG+AGG | - | tig0031043:16408-16427 | Msa1445340:intergenic | 30.0% | |
| !! | TCTGATTTTGATGTATAGCA+TGG | + | tig0031043:16407-16426 | Msa1445340:CDS | 30.0% |
| AAGCTGAAAAACTCTAAATC+GGG | - | tig0031043:16448-16467 | Msa1445340:intergenic | 30.0% | |
| ! | GCATTATTGATAGCTTACAA+AGG | + | tig0031043:16579-16598 | Msa1445340:CDS | 30.0% |
| AAGAGAACGTAACAACTTGA+GGG | - | tig0031043:15506-15525 | None:intergenic | 35.0% | |
| ! | TGGTTTCTTGGTTTGAAGAT+TGG | - | tig0031043:15594-15613 | None:intergenic | 35.0% |
| AAGGAGGTTAAACAGAAAAG+TGG | - | tig0031043:15614-15633 | None:intergenic | 35.0% | |
| ! | ATCTGGAATTGGAATTAAGG+AGG | - | tig0031043:15630-15649 | None:intergenic | 35.0% |
| ! | TTACAGATAAGGGCTTTTCA+GGG | - | tig0031043:15705-15724 | Msa1445340:intergenic | 35.0% |
| ! | ATTACAGATAAGGGCTTTTC+AGG | - | tig0031043:15706-15725 | Msa1445340:intergenic | 35.0% |
| ! | GTATTTGAGTTCTCTGACAA+AGG | - | tig0031043:15777-15796 | Msa1445340:intergenic | 35.0% |
| ! | CTTTCAACAATTGGGTTTTC+AGG | + | tig0031043:15840-15859 | Msa1445340:CDS | 35.0% |
| AAACTAGCAGACAAAATGGT+TGG | - | tig0031043:15898-15917 | Msa1445340:intergenic | 35.0% | |
| GTTCAAACTAGCAGACAAAA+TGG | - | tig0031043:15902-15921 | Msa1445340:intergenic | 35.0% | |
| TCTTAATAGCTTCCACAGAT+GGG | - | tig0031043:15936-15955 | Msa1445340:intergenic | 35.0% | |
| TTCTTAATAGCTTCCACAGA+TGG | - | tig0031043:15937-15956 | Msa1445340:intergenic | 35.0% | |
| !!! | ATTCAAGTTTTGAGCTACTG+TGG | + | tig0031043:15982-16001 | Msa1445340:CDS | 35.0% |
| CAATGTTGGCAACAAATGTT+TGG | - | tig0031043:16026-16045 | Msa1445340:intergenic | 35.0% | |
| ! | ACTCTCTAAGAAAGCAATGT+TGG | - | tig0031043:16040-16059 | Msa1445340:intergenic | 35.0% |
| ATTGCTTTCTTAGAGAGTTG+TGG | + | tig0031043:16042-16061 | Msa1445340:CDS | 35.0% | |
| ! | CTTGATTTCATTCAGCGTTT+TGG | + | tig0031043:16246-16265 | Msa1445340:CDS | 35.0% |
| GAGCTTGCAAATGTTCAAAA+AGG | + | tig0031043:16284-16303 | Msa1445340:CDS | 35.0% | |
| TCTGATACCCTAAGCAAATT+TGG | - | tig0031043:16312-16331 | Msa1445340:intergenic | 35.0% | |
| GGTATCAGAGAAGAAGTTAA+AGG | + | tig0031043:16323-16342 | Msa1445340:CDS | 35.0% | |
| TCAGAGAAGAAGTTAAAGGT+TGG | + | tig0031043:16327-16346 | Msa1445340:CDS | 35.0% | |
| !! | CAAAGTCAGCATTGGTTAAT+CGG | + | tig0031043:16382-16401 | Msa1445340:CDS | 35.0% |
| !! | GATTTTGATGTATAGCATGG+AGG | + | tig0031043:16410-16429 | Msa1445340:CDS | 35.0% |
| AGCTGAAAAACTCTAAATCG+GGG | - | tig0031043:16447-16466 | Msa1445340:intergenic | 35.0% | |
| AAGAGAACGTAACAACTTGA+GGG | - | tig0031043:15506-15525 | Msa1445340:intergenic | 35.0% | |
| ! | TGGTTTCTTGGTTTGAAGAT+TGG | - | tig0031043:15594-15613 | Msa1445340:intergenic | 35.0% |
| AAGGAGGTTAAACAGAAAAG+TGG | - | tig0031043:15614-15633 | Msa1445340:intergenic | 35.0% | |
| ! | ATCTGGAATTGGAATTAAGG+AGG | - | tig0031043:15630-15649 | Msa1445340:intergenic | 35.0% |
| ! | TTACAGATAAGGGCTTTTCA+GGG | - | tig0031043:15705-15724 | Msa1445340:intergenic | 35.0% |
| ! | ATTACAGATAAGGGCTTTTC+AGG | - | tig0031043:15706-15725 | Msa1445340:intergenic | 35.0% |
| ! | GTATTTGAGTTCTCTGACAA+AGG | - | tig0031043:15777-15796 | Msa1445340:intergenic | 35.0% |
| ! | CTTTCAACAATTGGGTTTTC+AGG | + | tig0031043:15840-15859 | Msa1445340:CDS | 35.0% |
| AAACTAGCAGACAAAATGGT+TGG | - | tig0031043:15898-15917 | Msa1445340:intergenic | 35.0% | |
| GTTCAAACTAGCAGACAAAA+TGG | - | tig0031043:15902-15921 | Msa1445340:intergenic | 35.0% | |
| TCTTAATAGCTTCCACAGAT+GGG | - | tig0031043:15936-15955 | Msa1445340:intergenic | 35.0% | |
| TTCTTAATAGCTTCCACAGA+TGG | - | tig0031043:15937-15956 | Msa1445340:intergenic | 35.0% | |
| !!! | ATTCAAGTTTTGAGCTACTG+TGG | + | tig0031043:15982-16001 | Msa1445340:CDS | 35.0% |
| CAATGTTGGCAACAAATGTT+TGG | - | tig0031043:16026-16045 | Msa1445340:intergenic | 35.0% | |
| ! | ACTCTCTAAGAAAGCAATGT+TGG | - | tig0031043:16040-16059 | Msa1445340:intergenic | 35.0% |
| ATTGCTTTCTTAGAGAGTTG+TGG | + | tig0031043:16042-16061 | Msa1445340:CDS | 35.0% | |
| ! | CTTGATTTCATTCAGCGTTT+TGG | + | tig0031043:16246-16265 | Msa1445340:CDS | 35.0% |
| GAGCTTGCAAATGTTCAAAA+AGG | + | tig0031043:16284-16303 | Msa1445340:CDS | 35.0% | |
| TCTGATACCCTAAGCAAATT+TGG | - | tig0031043:16312-16331 | Msa1445340:intergenic | 35.0% | |
| GGTATCAGAGAAGAAGTTAA+AGG | + | tig0031043:16323-16342 | Msa1445340:CDS | 35.0% | |
| TCAGAGAAGAAGTTAAAGGT+TGG | + | tig0031043:16327-16346 | Msa1445340:CDS | 35.0% | |
| !! | CAAAGTCAGCATTGGTTAAT+CGG | + | tig0031043:16382-16401 | Msa1445340:CDS | 35.0% |
| !! | GATTTTGATGTATAGCATGG+AGG | + | tig0031043:16410-16429 | Msa1445340:CDS | 35.0% |
| AGCTGAAAAACTCTAAATCG+GGG | - | tig0031043:16447-16466 | Msa1445340:intergenic | 35.0% | |
| GAAGAGAACGTAACAACTTG+AGG | - | tig0031043:15507-15526 | None:intergenic | 40.0% | |
| CGAAGTGAGTTAGAACTGAA+AGG | - | tig0031043:15529-15548 | None:intergenic | 40.0% | |
| ! | TACAGATAAGGGCTTTTCAG+GGG | - | tig0031043:15704-15723 | Msa1445340:intergenic | 40.0% |
| TTGAGTTCTCTGACAAAGGA+TGG | - | tig0031043:15773-15792 | Msa1445340:intergenic | 40.0% | |
| !! | GGTTTTCAGGGTTCTCAATT+AGG | + | tig0031043:15853-15872 | Msa1445340:CDS | 40.0% |
| GCAACAAATGTTTGGTACAC+TGG | - | tig0031043:16018-16037 | Msa1445340:intergenic | 40.0% | |
| TTAGAGAGTTGTGGCATTGT+TGG | + | tig0031043:16051-16070 | Msa1445340:CDS | 40.0% | |
| TAGAGAGTTGTGGCATTGTT+GGG | + | tig0031043:16052-16071 | Msa1445340:CDS | 40.0% | |
| !! | CGATTAACCAATGCTGACTT+TGG | - | tig0031043:16384-16403 | Msa1445340:intergenic | 40.0% |
| TTTATCCGAGGACACATTCT+TGG | + | tig0031043:16521-16540 | Msa1445340:CDS | 40.0% | |
| GAAGAGAACGTAACAACTTG+AGG | - | tig0031043:15507-15526 | Msa1445340:intergenic | 40.0% | |
| CGAAGTGAGTTAGAACTGAA+AGG | - | tig0031043:15529-15548 | Msa1445340:intergenic | 40.0% | |
| ! | TACAGATAAGGGCTTTTCAG+GGG | - | tig0031043:15704-15723 | Msa1445340:intergenic | 40.0% |
| TTGAGTTCTCTGACAAAGGA+TGG | - | tig0031043:15773-15792 | Msa1445340:intergenic | 40.0% | |
| !! | GGTTTTCAGGGTTCTCAATT+AGG | + | tig0031043:15853-15872 | Msa1445340:CDS | 40.0% |
| GCAACAAATGTTTGGTACAC+TGG | - | tig0031043:16018-16037 | Msa1445340:intergenic | 40.0% | |
| TTAGAGAGTTGTGGCATTGT+TGG | + | tig0031043:16051-16070 | Msa1445340:CDS | 40.0% | |
| TAGAGAGTTGTGGCATTGTT+GGG | + | tig0031043:16052-16071 | Msa1445340:CDS | 40.0% | |
| !! | CGATTAACCAATGCTGACTT+TGG | - | tig0031043:16384-16403 | Msa1445340:intergenic | 40.0% |
| TTTATCCGAGGACACATTCT+TGG | + | tig0031043:16521-16540 | Msa1445340:CDS | 40.0% | |
| CAAAACATTGGTCCCATCTG+TGG | + | tig0031043:15921-15940 | Msa1445340:CDS | 45.0% | |
| !!! | AAGTTTTGAGCTACTGTGGC+TGG | + | tig0031043:15986-16005 | Msa1445340:CDS | 45.0% |
| !!! | AGTTTTGAGCTACTGTGGCT+GGG | + | tig0031043:15987-16006 | Msa1445340:CDS | 45.0% |
| AGAGAGTTGTGGCATTGTTG+GGG | + | tig0031043:16053-16072 | Msa1445340:CDS | 45.0% | |
| TATGCTGCCAAAGTCAGCAT+TGG | + | tig0031043:16374-16393 | Msa1445340:CDS | 45.0% | |
| CTTGTCCAAGAATGTGTCCT+CGG | - | tig0031043:16529-16548 | Msa1445340:intergenic | 45.0% | |
| CAAAACATTGGTCCCATCTG+TGG | + | tig0031043:15921-15940 | Msa1445340:CDS | 45.0% | |
| !!! | AAGTTTTGAGCTACTGTGGC+TGG | + | tig0031043:15986-16005 | Msa1445340:CDS | 45.0% |
| !!! | AGTTTTGAGCTACTGTGGCT+GGG | + | tig0031043:15987-16006 | Msa1445340:CDS | 45.0% |
| AGAGAGTTGTGGCATTGTTG+GGG | + | tig0031043:16053-16072 | Msa1445340:CDS | 45.0% | |
| TATGCTGCCAAAGTCAGCAT+TGG | + | tig0031043:16374-16393 | Msa1445340:CDS | 45.0% | |
| CTTGTCCAAGAATGTGTCCT+CGG | - | tig0031043:16529-16548 | Msa1445340:intergenic | 45.0% | |
| TTGTGGCATTGTTGGGGATC+AGG | + | tig0031043:16059-16078 | Msa1445340:CDS | 50.0% | |
| TTGTGGCATTGTTGGGGATC+AGG | + | tig0031043:16059-16078 | Msa1445340:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031043 | gene | 15496 | 16632 | 15496 | ID=Msa1445340;Name=Msa1445340 |
| tig0031043 | mRNA | 15496 | 16632 | 15496 | ID=Msa1445340-mRNA-1;Parent=Msa1445340;Name=Msa1445340-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|-1|0|1|-1|1|1|0|378 |
| tig0031043 | exon | 15496 | 16632 | 15496 | ID=Msa1445340-mRNA-1:exon:14943;Parent=Msa1445340-mRNA-1 |
| tig0031043 | CDS | 15496 | 16632 | 15496 | ID=Msa1445340-mRNA-1:cds;Parent=Msa1445340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
