AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1445560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445560 MtrunA17_Chr2g0296221 71.554 341 71 3 1 317 25 363 3.58e-164 476
Msa1445560 MtrunA17_Chr2g0296171 73.178 343 61 4 1 317 7 344 1.67e-161 468
Msa1445560 MtrunA17_Chr2g0296191 72.141 341 69 3 1 317 608 946 7.70e-160 484
Msa1445560 MtrunA17_Chr2g0296191 53.016 315 113 5 26 318 159 460 9.67e-86 288
Msa1445560 MtrunA17_Chr2g0296741 65.192 339 89 3 1 317 21 352 4.24e-146 429
Msa1445560 MtrunA17_Chr2g0296711 66.077 339 89 4 1 317 1 335 6.94e-137 405
Msa1445560 MtrunA17_Chr2g0296231 62.242 339 98 2 1 317 1 331 2.00e-136 403
Msa1445560 MtrunA17_Chr2g0315731 63.127 339 96 3 1 317 21 352 1.71e-134 399
Msa1445560 MtrunA17_Chr2g0296721 63.127 339 95 4 1 317 1 331 7.37e-134 397
Msa1445560 MtrunA17_Chr2g0296181 66.556 302 74 2 1 281 1 296 9.01e-126 376
Msa1445560 MtrunA17_Chr2g0296291 52.941 340 93 4 36 318 19 348 1.18e-100 312
Msa1445560 MtrunA17_Chr2g0296251 52.353 340 103 3 35 317 10 347 1.43e-99 308
Msa1445560 MtrunA17_Chr7g0228361 47.152 316 111 8 343 605 23 335 4.95e-84 266
Msa1445560 MtrunA17_Chr2g0296111 47.937 315 129 6 27 317 17 320 4.68e-81 260
Msa1445560 MtrunA17_Chr2g0296151 47.368 304 128 4 36 317 26 319 5.33e-80 257
Msa1445560 MtrunA17_Chr2g0295741 45.768 319 141 4 21 317 17 325 1.48e-79 256
Msa1445560 MtrunA17_Chr2g0295731 44.479 326 133 6 16 317 25 326 1.43e-77 251
Msa1445560 MtrunA17_Chr7g0234411 73.743 179 43 2 343 517 28 206 6.61e-76 249
Msa1445560 MtrunA17_Chr7g0234411 80.682 88 17 0 518 605 333 420 9.27e-42 157
Msa1445560 MtrunA17_Chr2g0296121 44.828 319 143 5 22 318 99 406 2.95e-72 239
Msa1445560 MtrunA17_Chr2g0296301 45.395 304 132 7 39 318 23 316 7.33e-71 233
Msa1445560 MtrunA17_Chr4g0067121 41.869 289 140 4 52 317 46 329 4.64e-65 218
Msa1445560 MtrunA17_Chr4g0067671 42.857 294 137 4 46 317 37 321 7.09e-64 214
Msa1445560 MtrunA17_Chr4g0067141 41.414 297 143 4 43 317 34 321 7.47e-63 212
Msa1445560 MtrunA17_Chr6g0457201 57.286 199 69 7 343 532 33 224 3.87e-62 211
Msa1445560 MtrunA17_Chr6g0457201 43.357 143 51 2 493 605 267 409 1.63e-25 109
Msa1445560 MtrunA17_Chr2g0295761 42.809 299 141 5 50 323 53 346 1.18e-60 206
Msa1445560 MtrunA17_Chr6g0457171 54.255 188 77 6 343 528 16 196 3.57e-54 189
Msa1445560 MtrunA17_Chr6g0457171 56.000 100 32 1 518 605 294 393 2.43e-26 111
Msa1445560 MtrunA17_Chr6g0457191 59.146 164 59 5 354 515 1 158 6.23e-53 186
Msa1445560 MtrunA17_Chr6g0457191 52.586 116 27 2 518 605 268 383 1.31e-26 112
Msa1445560 MtrunA17_Chr2g0296211 70.543 129 33 2 1 129 66 189 9.66e-51 179
Msa1445560 MtrunA17_Chr2g0296211 54.545 121 33 1 220 318 188 308 3.70e-31 125
Msa1445560 MtrunA17_Chr2g0286191 37.458 299 147 7 59 329 33 319 5.60e-47 169
Msa1445560 MtrunA17_Chr6g0476501 41.065 263 125 9 343 601 36 272 4.24e-43 156
Msa1445560 MtrunA17_Chr2g0296551 61.364 132 29 1 208 317 2 133 7.06e-43 152
Msa1445560 MtrunA17_Chr6g0457181 51.765 170 75 5 348 516 21 184 2.21e-41 154
Msa1445560 MtrunA17_Chr6g0457181 57.895 95 33 1 518 605 289 383 1.51e-26 112
Msa1445560 MtrunA17_Chr2g0295711 44.565 184 85 3 14 197 19 185 1.35e-38 141
Msa1445560 MtrunA17_Chr2g0295751 51.572 159 68 2 27 185 26 175 1.31e-36 143
Msa1445560 MtrunA17_Chr4g0072971 45.699 186 81 5 343 515 15 193 2.25e-35 137
Msa1445560 MtrunA17_Chr4g0072971 58.182 55 18 1 518 567 306 360 4.50e-12 68.2
Msa1445560 MtrunA17_Chr6g0466931 38.049 205 86 6 432 605 2 196 3.38e-31 120
Msa1445560 MtrunA17_Chr2g0296561 50.376 133 53 3 29 161 19 138 2.44e-30 116
Msa1445560 MtrunA17_Chr1g0184891 36.032 247 119 12 343 565 22 253 1.34e-27 115
Msa1445560 MtrunA17_Chr1g0184891 43.750 80 45 0 518 597 295 374 6.61e-14 73.9
Msa1445560 MtrunA17_Chr7g0238801 40.884 181 93 5 343 519 28 198 3.50e-26 111
Msa1445560 MtrunA17_Chr7g0238801 45.349 86 41 1 518 597 300 385 1.15e-12 70.1
Msa1445560 MtrunA17_Chr2g0296701 56.731 104 23 1 236 317 2 105 5.21e-26 105
Msa1445560 MtrunA17_Chr5g0418291 55.000 100 35 2 516 605 354 453 8.25e-26 110
Msa1445560 MtrunA17_Chr5g0418291 41.711 187 77 9 343 507 57 233 3.50e-25 108
Msa1445560 MtrunA17_Chr5g0429561 39.326 178 94 7 333 507 3 169 8.97e-26 109
Msa1445560 MtrunA17_Chr5g0429561 55.814 86 35 2 518 601 277 361 6.57e-20 92.0
Msa1445560 MtrunA17_Chr7g0235411 41.818 165 82 6 343 505 28 180 1.00e-25 109
Msa1445560 MtrunA17_Chr7g0235411 48.864 88 39 2 516 597 286 373 1.47e-16 82.0
Msa1445560 MtrunA17_Chr7g0234261 41.176 170 84 6 343 507 29 187 6.13e-25 107
Msa1445560 MtrunA17_Chr7g0234261 37.778 90 46 1 514 593 292 381 4.85e-11 65.1
Msa1445560 MtrunA17_Chr7g0228821 41.436 181 91 8 337 512 24 194 1.13e-24 106
Msa1445560 MtrunA17_Chr7g0228821 46.250 80 41 1 518 597 306 383 1.90e-15 78.6
Msa1445560 MtrunA17_Chr6g0468721 54.348 92 33 2 523 605 13 104 1.37e-24 98.6
Msa1445560 MtrunA17_Chr4g0001831 27.564 312 192 8 30 316 16 318 1.66e-24 105
Msa1445560 MtrunA17_Chr5g0429621 35.754 179 95 6 337 507 7 173 1.74e-24 105
Msa1445560 MtrunA17_Chr5g0429621 53.409 88 36 2 518 601 282 368 7.49e-18 85.9
Msa1445560 MtrunA17_Chr7g0238531 42.169 166 85 5 343 507 29 184 2.62e-24 105
Msa1445560 MtrunA17_Chr7g0238531 41.593 113 60 3 487 593 264 376 1.03e-13 73.2
Msa1445560 MtrunA17_Chr7g0257571 39.674 184 93 6 337 514 33 204 3.73e-24 105
Msa1445560 MtrunA17_Chr7g0257571 37.594 133 62 4 494 605 294 426 2.31e-12 69.3
Msa1445560 MtrunA17_Chr2g0303281 40.244 164 87 4 343 505 18 171 7.14e-24 103
Msa1445560 MtrunA17_Chr7g0235671 55.319 94 32 2 518 601 85 178 9.73e-24 100
Msa1445560 MtrunA17_Chr7g0238591 33.186 226 123 8 337 551 14 222 1.06e-23 103
Msa1445560 MtrunA17_Chr7g0238591 46.154 91 39 3 518 601 288 375 2.83e-13 72.0
Msa1445560 MtrunA17_Chr5g0447131 36.923 195 99 6 343 528 30 209 1.25e-23 103
Msa1445560 MtrunA17_Chr5g0447131 46.067 89 42 1 519 601 302 390 3.53e-14 74.7
Msa1445560 MtrunA17_Chr7g0233491 40.120 167 88 6 343 507 29 185 1.28e-23 103
Msa1445560 MtrunA17_Chr7g0233491 37.500 88 51 1 514 597 289 376 7.91e-11 64.3
Msa1445560 MtrunA17_Chr4g0013651 41.341 179 86 8 343 516 37 201 1.58e-23 103
Msa1445560 MtrunA17_Chr7g0222501 40.110 182 91 8 343 514 30 203 1.97e-23 103
Msa1445560 MtrunA17_Chr7g0222501 41.860 86 43 1 519 597 324 409 2.38e-11 66.2
Msa1445560 MtrunA17_Chr7g0235421 41.860 172 84 6 343 508 22 183 2.80e-23 102
Msa1445560 MtrunA17_Chr7g0235421 44.643 112 46 2 502 597 283 394 5.92e-18 86.7
Msa1445560 MtrunA17_Chr7g0233501 40.476 168 86 7 343 507 29 185 3.85e-23 102
Msa1445560 MtrunA17_Chr1g0167401 36.019 211 124 5 345 551 29 232 4.31e-23 101
Msa1445560 MtrunA17_Chr1g0167401 50.649 77 33 1 518 589 297 373 1.41e-16 82.0
Msa1445560 MtrunA17_Chr7g0238861 33.803 213 110 8 334 519 3 211 5.73e-23 101
Msa1445560 MtrunA17_Chr7g0238861 42.342 111 52 3 494 595 285 392 5.05e-15 77.4
Msa1445560 MtrunA17_Chr7g0236761 37.427 171 98 3 343 510 30 194 6.38e-23 101
Msa1445560 MtrunA17_Chr7g0236761 36.508 126 74 2 475 597 270 392 2.03e-14 75.5
Msa1445560 MtrunA17_Chr3g0091301 37.566 189 93 7 343 515 30 209 1.09e-22 101
Msa1445560 MtrunA17_Chr3g0091301 47.000 100 36 3 519 601 321 420 4.61e-16 80.9
Msa1445560 MtrunA17_Chr7g0236821 38.674 181 89 7 343 514 33 200 1.55e-22 100
Msa1445560 MtrunA17_Chr7g0236821 39.669 121 58 3 494 602 289 406 4.00e-16 80.9
Msa1445560 MtrunA17_Chr6g0470791 38.122 181 96 5 337 513 23 191 4.49e-22 99.4
Msa1445560 MtrunA17_Chr6g0470791 37.374 99 45 2 519 600 312 410 6.19e-12 68.2
Msa1445560 MtrunA17_Chr7g0235861 38.462 182 85 10 343 508 29 199 5.88e-22 99.0
Msa1445560 MtrunA17_Chr7g0235861 46.535 101 37 3 518 601 312 412 1.26e-14 76.3
Msa1445560 MtrunA17_Chr7g0238611 33.766 231 118 9 343 551 29 246 5.92e-22 98.6
Msa1445560 MtrunA17_Chr7g0238881 37.624 202 112 6 337 534 25 216 6.07e-22 98.6
Msa1445560 MtrunA17_Chr7g0238881 43.182 88 44 1 516 597 298 385 2.64e-13 72.0
Msa1445560 MtrunA17_Chr3g0091431 36.979 192 90 7 343 515 30 209 6.34e-22 99.0
Msa1445560 MtrunA17_Chr3g0091431 50.000 94 36 2 519 601 324 417 5.90e-18 86.7
Msa1445560 MtrunA17_Chr2g0303301 36.872 179 105 3 328 505 14 185 7.37e-22 98.2
Msa1445560 MtrunA17_Chr2g0296131 45.631 103 34 1 237 317 9 111 1.02e-21 92.8
Msa1445560 MtrunA17_Chr7g0234991 43.089 123 56 2 493 601 122 244 1.80e-21 94.4
Msa1445560 MtrunA17_Chr7g0224791 41.279 172 85 7 344 512 19 177 2.56e-21 96.3
Msa1445560 MtrunA17_Chr2g0295721 46.154 104 34 1 233 314 1 104 3.04e-21 89.7
Msa1445560 MtrunA17_Chr4g0072991 34.973 183 95 7 333 507 31 197 3.83e-21 96.3
Msa1445560 MtrunA17_Chr4g0072991 51.042 96 36 3 516 601 315 409 6.25e-17 83.6
Msa1445560 MtrunA17_Chr3g0081681 47.115 104 35 2 519 602 131 234 6.29e-21 92.4
Msa1445560 MtrunA17_Chr2g0303291 36.471 170 90 6 343 508 28 183 7.68e-21 94.7
Msa1445560 MtrunA17_Chr2g0303121 37.500 168 92 5 343 505 27 186 8.00e-21 95.1
Msa1445560 MtrunA17_Chr7g0248601 31.317 281 143 9 343 592 16 277 8.68e-21 93.6
Msa1445560 MtrunA17_Chr7g0234911 43.089 123 56 2 493 601 294 416 9.43e-21 95.1
Msa1445560 MtrunA17_Chr7g0234911 31.579 209 108 6 343 525 20 219 1.33e-19 91.7
Msa1445560 MtrunA17_Chr6g0455961 36.757 185 107 5 337 520 22 197 9.88e-21 95.5
Msa1445560 MtrunA17_Chr6g0455961 39.796 98 44 1 518 600 311 408 2.29e-14 75.9
Msa1445560 MtrunA17_Chr5g0428441 39.881 168 83 7 343 505 23 177 1.10e-20 94.7
Msa1445560 MtrunA17_Chr5g0428441 50.538 93 37 1 518 601 292 384 5.45e-15 77.4
Msa1445560 MtrunA17_Chr7g0238601 31.556 225 119 8 343 551 20 225 1.13e-20 94.4
Msa1445560 MtrunA17_Chr7g0238601 45.977 87 36 4 518 598 291 372 2.91e-12 68.9
Msa1445560 MtrunA17_Chr3g0114671 34.466 206 94 9 335 511 5 198 1.17e-20 94.7
Msa1445560 MtrunA17_Chr3g0114671 42.453 106 43 3 518 605 308 413 1.23e-13 73.2
Msa1445560 MtrunA17_Chr7g0234941 43.089 123 56 2 493 601 294 416 1.19e-20 94.7
Msa1445560 MtrunA17_Chr7g0234941 32.057 209 107 5 343 525 20 219 1.03e-19 92.0
Msa1445560 MtrunA17_Chr7g0236001 37.363 182 87 8 343 508 25 195 1.45e-20 94.7
Msa1445560 MtrunA17_Chr7g0236001 44.554 101 39 3 518 601 308 408 8.11e-14 73.9
Msa1445560 MtrunA17_Chr2g0301311 36.364 176 92 5 343 508 30 195 1.63e-20 94.4
Msa1445560 MtrunA17_Chr2g0301311 47.959 98 33 3 518 597 308 405 3.45e-18 87.4
Msa1445560 MtrunA17_Chr7g0234961 32.057 209 107 5 343 525 20 219 1.76e-20 91.3
Msa1445560 MtrunA17_Chr7g0238791 34.872 195 105 5 343 525 46 230 1.91e-20 94.4
Msa1445560 MtrunA17_Chr7g0238791 43.182 88 44 1 516 597 315 402 1.05e-13 73.6
Msa1445560 MtrunA17_Chr2g0301321 38.547 179 79 9 343 505 29 192 3.66e-20 92.4
Msa1445560 MtrunA17_Chr7g0241641 37.374 198 93 7 337 525 24 199 3.89e-20 93.6
Msa1445560 MtrunA17_Chr7g0241641 43.333 90 38 1 516 592 297 386 1.85e-14 76.3
Msa1445560 MtrunA17_Chr7g0236781 39.181 171 95 5 343 510 30 194 4.11e-20 93.2
Msa1445560 MtrunA17_Chr7g0236781 48.193 83 40 1 514 593 304 386 3.88e-15 77.8
Msa1445560 MtrunA17_Chr4g0013661 31.944 216 116 8 328 528 3 202 5.40e-20 92.8
Msa1445560 MtrunA17_Chr4g0013661 34.127 126 62 5 494 601 274 396 6.26e-13 70.9
Msa1445560 MtrunA17_Chr7g0257581 33.203 256 134 11 343 587 42 271 6.24e-20 92.0
Msa1445560 MtrunA17_Chr7g0236331 44.828 116 53 3 494 601 277 389 9.33e-20 92.0
Msa1445560 MtrunA17_Chr7g0236331 36.257 171 88 8 345 507 30 187 2.48e-19 90.5
Msa1445560 MtrunA17_Chr1g0169751 36.559 186 94 8 337 511 23 195 1.08e-19 90.9
Msa1445560 MtrunA17_Chr7g0241021 35.751 193 101 9 337 516 24 206 1.74e-19 91.3
Msa1445560 MtrunA17_Chr7g0241021 42.857 84 46 2 518 600 313 395 7.42e-12 67.8
Msa1445560 MtrunA17_Chr7g0235731 40.373 161 80 4 327 480 14 165 1.94e-19 90.9
Msa1445560 MtrunA17_Chr7g0235731 36.975 119 61 4 494 601 258 373 9.87e-11 63.9
Msa1445560 MtrunA17_Chr2g0303131 37.952 166 90 5 343 505 27 182 2.08e-19 90.9
Msa1445560 MtrunA17_Chr1g0195191 38.012 171 86 5 343 505 17 175 2.17e-19 90.9
Msa1445560 MtrunA17_Chr1g0195191 43.396 106 41 5 518 605 302 406 9.21e-15 76.6
Msa1445560 MtrunA17_Chr1g0210611 29.467 319 136 14 358 601 2 306 2.29e-19 89.4
Msa1445560 MtrunA17_Chr7g0241011 35.593 177 96 7 343 513 32 196 2.37e-19 90.9
Msa1445560 MtrunA17_Chr7g0241011 33.333 132 62 3 493 600 263 392 1.30e-11 67.0
Msa1445560 MtrunA17_Chr6g0477321 46.491 114 49 4 494 597 156 267 3.50e-19 88.2
Msa1445560 MtrunA17_Chr7g0235401 35.542 166 96 4 343 507 14 169 3.81e-19 89.7
Msa1445560 MtrunA17_Chr7g0235401 45.763 118 51 5 494 600 256 371 2.92e-16 80.9
Msa1445560 MtrunA17_Chr8g0366331 32.804 189 118 5 343 528 30 212 4.69e-19 89.7
Msa1445560 MtrunA17_Chr8g0366331 50.685 73 30 2 518 588 314 382 2.21e-13 72.4
Msa1445560 MtrunA17_Chr7g0235791 37.870 169 85 6 343 505 21 175 5.67e-19 88.2
Msa1445560 MtrunA17_Chr1g0174021 54.118 85 29 2 518 592 169 253 8.83e-19 87.0
Msa1445560 MtrunA17_Chr7g0232791 31.765 255 133 10 337 571 24 257 1.03e-18 87.8
Msa1445560 MtrunA17_Chr4g0015221 50.617 81 33 1 518 591 168 248 1.06e-18 86.3
Msa1445560 MtrunA17_Chr3g0119511 38.889 162 83 5 350 507 35 184 1.08e-18 89.4
Msa1445560 MtrunA17_Chr3g0119511 41.837 98 42 1 518 600 311 408 2.26e-16 82.0
Msa1445560 MtrunA17_Chr8g0389411 35.429 175 91 6 343 512 9 166 1.25e-18 87.8
Msa1445560 MtrunA17_Chr7g0241631 35.052 194 105 6 337 525 24 201 1.44e-18 88.2
Msa1445560 MtrunA17_Chr7g0241631 55.714 70 27 2 523 589 308 376 2.21e-14 75.5
Msa1445560 MtrunA17_Chr5g0423291 35.556 180 102 4 337 510 18 189 1.48e-18 89.0
Msa1445560 MtrunA17_Chr5g0423291 44.944 89 41 2 520 600 323 411 1.13e-13 73.9
Msa1445560 MtrunA17_Chr7g0238771 32.512 203 116 5 334 525 37 229 1.83e-18 88.2
Msa1445560 MtrunA17_Chr7g0238771 43.182 88 44 1 516 597 314 401 5.07e-14 74.3
Msa1445560 MtrunA17_Chr7g0248611 32.083 240 126 11 343 568 54 270 1.84e-18 88.6
Msa1445560 MtrunA17_Chr7g0248611 52.174 92 32 2 518 600 345 433 6.29e-18 87.0
Msa1445560 MtrunA17_Chr7g0248641 52.809 89 35 2 518 599 325 413 2.31e-18 88.2
Msa1445560 MtrunA17_Chr7g0248641 35.417 192 91 8 343 505 15 202 1.74e-17 85.5
Msa1445560 MtrunA17_Chr4g0015211 35.714 182 105 7 337 511 28 204 5.73e-18 86.7
Msa1445560 MtrunA17_Chr4g0015211 49.367 79 33 2 518 589 309 387 6.15e-15 77.0
Msa1445560 MtrunA17_Chr4g0011441 36.313 179 95 8 337 512 41 203 8.81e-18 85.9
Msa1445560 MtrunA17_Chr4g0011441 43.158 95 47 2 518 605 316 410 2.97e-15 78.2
Msa1445560 MtrunA17_Chr2g0280551 35.644 202 97 9 343 523 27 216 1.15e-17 85.9
Msa1445560 MtrunA17_Chr2g0280551 39.474 114 59 2 494 597 299 412 1.25e-13 73.2
Msa1445560 MtrunA17_Chr4g0004781 50.000 84 33 1 518 592 314 397 1.30e-17 85.5
Msa1445560 MtrunA17_Chr4g0004781 32.558 172 82 6 356 505 30 189 3.13e-12 68.9
Msa1445560 MtrunA17_Chr7g0236711 55.844 77 29 2 518 589 288 364 1.33e-17 85.1
Msa1445560 MtrunA17_Chr7g0236711 36.686 169 86 8 343 505 25 178 9.77e-15 76.3
Msa1445560 MtrunA17_Chr6g0488481 35.632 174 102 4 345 516 21 186 1.47e-17 85.5
Msa1445560 MtrunA17_Chr6g0488481 40.217 92 46 1 518 600 295 386 1.93e-13 72.8
Msa1445560 MtrunA17_Chr1g0164641 36.752 117 65 3 485 593 70 185 1.72e-17 81.6
Msa1445560 MtrunA17_Chr6g0486691 35.938 192 93 7 343 505 53 243 1.84e-17 85.5
Msa1445560 MtrunA17_Chr7g0248561 33.702 181 100 5 343 505 17 195 2.13e-17 85.1
Msa1445560 MtrunA17_Chr7g0248561 42.857 105 40 2 521 605 323 427 4.73e-17 84.0
Msa1445560 MtrunA17_Chr2g0296751 58.209 67 28 0 251 317 12 78 2.44e-17 80.1
Msa1445560 MtrunA17_Chr4g0004791 50.000 84 33 1 518 592 314 397 2.93e-17 84.7
Msa1445560 MtrunA17_Chr4g0004791 34.973 183 85 6 345 505 19 189 5.82e-16 80.5
Msa1445560 MtrunA17_Chr7g0214691 35.556 180 64 6 462 592 5 181 3.17e-17 80.5
Msa1445560 MtrunA17_Chr7g0243821 34.872 195 98 8 337 512 22 206 4.60e-17 82.8
Msa1445560 MtrunA17_Chr6g0459941 34.123 211 99 11 343 533 16 206 4.70e-17 83.6
Msa1445560 MtrunA17_Chr7g0243791 33.673 196 99 7 337 512 22 206 4.91e-17 84.0
Msa1445560 MtrunA17_Chr1g0151891 35.714 168 60 5 465 590 74 235 5.59e-17 81.3
Msa1445560 MtrunA17_Chr7g0227941 47.727 88 41 2 514 601 137 219 6.09e-17 80.5
Msa1445560 MtrunA17_Chr7g0247401 35.795 176 96 8 343 505 23 194 1.05e-16 82.8
Msa1445560 MtrunA17_Chr7g0247971 55.405 74 29 1 521 590 285 358 1.36e-16 82.0
Msa1445560 MtrunA17_Chr7g0247971 36.691 139 72 4 343 472 24 155 6.36e-13 70.9
Msa1445560 MtrunA17_Chr1g0151121 51.163 86 37 3 518 602 31 112 1.42e-16 76.6
Msa1445560 MtrunA17_Chr7g0241051 36.066 183 95 7 343 514 18 189 1.56e-16 82.0
Msa1445560 MtrunA17_Chr7g0241051 43.750 80 44 1 518 597 302 380 5.45e-12 68.2
Msa1445560 MtrunA17_Chr4g0008881 51.724 87 38 2 518 600 293 379 1.65e-16 82.0
Msa1445560 MtrunA17_Chr4g0008881 37.500 176 90 7 337 505 7 169 4.43e-15 77.4
Msa1445560 MtrunA17_Chr7g0238551 40.828 169 84 7 343 507 29 185 1.76e-16 81.6
Msa1445560 MtrunA17_Chr7g0238551 37.391 115 66 3 485 593 256 370 3.07e-12 68.6
Msa1445560 MtrunA17_Chr8g0377801 26.255 259 165 3 88 322 85 341 1.77e-16 82.0
Msa1445560 MtrunA17_Chr2g0296161 40.187 107 42 2 233 317 1 107 2.02e-16 77.4
Msa1445560 MtrunA17_Chr7g0247961 35.519 183 86 9 343 505 38 208 2.39e-16 82.0
Msa1445560 MtrunA17_Chr7g0247961 38.261 115 44 2 518 605 327 441 5.88e-16 80.5
Msa1445560 MtrunA17_Chr4g0011451 32.353 170 100 5 354 522 1 156 2.45e-16 77.8
Msa1445560 MtrunA17_Chr7g0248001 46.667 90 33 1 518 592 333 422 2.79e-16 81.6
Msa1445560 MtrunA17_Chr7g0248001 31.443 194 100 5 343 512 35 219 9.11e-15 77.0
Msa1445560 MtrunA17_Chr8g0348801 43.902 82 40 1 518 593 45 126 3.22e-16 75.9
Msa1445560 MtrunA17_Chr7g0235661 52.632 76 32 1 526 597 65 140 3.85e-16 76.3
Msa1445560 MtrunA17_Chr1g0159651 36.313 179 98 6 343 512 15 186 6.35e-16 80.1
Msa1445560 MtrunA17_Chr1g0159651 38.053 113 54 3 494 590 261 373 6.63e-13 70.9
Msa1445560 MtrunA17_Chr8g0377781 27.344 256 152 4 89 316 73 322 6.89e-16 79.7
Msa1445560 MtrunA17_Chr8g0348791 44.737 76 36 1 518 587 34 109 8.28e-16 73.6
Msa1445560 MtrunA17_Chr3g0105221 34.254 181 96 9 337 514 28 188 1.08e-15 79.3
Msa1445560 MtrunA17_Chr3g0105221 43.820 89 44 2 519 601 303 391 1.28e-12 70.1
Msa1445560 MtrunA17_Chr8g0368051 42.105 95 48 1 518 605 125 219 1.70e-15 76.3
Msa1445560 MtrunA17_Chr2g0284671 54.054 74 32 2 519 590 262 335 2.99e-15 77.8
Msa1445560 MtrunA17_Chr2g0284671 32.927 164 82 6 354 505 1 148 1.63e-11 66.2
Msa1445560 MtrunA17_Chr1g0172991 47.500 80 35 2 518 590 336 415 3.18e-15 78.6
Msa1445560 MtrunA17_Chr2g0287201 33.333 186 100 9 343 523 63 229 4.14e-15 75.9
Msa1445560 MtrunA17_Chr4g0013671 33.520 179 90 8 343 513 3 160 5.93e-15 75.5
Msa1445560 MtrunA17_Chr6g0450771 31.818 176 101 6 338 507 28 190 6.64e-15 77.0
Msa1445560 MtrunA17_Chr3g0082011 34.746 118 66 3 485 593 255 370 7.72e-15 76.6
Msa1445560 MtrunA17_Chr4g0013691 33.889 180 98 8 337 510 10 174 1.32e-14 75.5
Msa1445560 MtrunA17_Chr1g0151091 51.087 92 30 4 518 594 280 371 1.71e-14 75.9
Msa1445560 MtrunA17_Chr1g0151131 33.613 119 63 2 343 454 15 124 1.93e-14 70.5
Msa1445560 MtrunA17_Chr7g0272851 42.708 96 46 2 518 605 161 255 2.00e-14 73.9
Msa1445560 MtrunA17_Chr2g0301331 43.636 110 52 5 343 448 33 136 2.07e-14 71.2
Msa1445560 MtrunA17_Chr4g0013801 44.944 89 43 2 519 601 331 419 2.15e-14 75.9
Msa1445560 MtrunA17_Chr4g0013771 44.944 89 43 2 519 601 331 419 2.64e-14 75.5
Msa1445560 MtrunA17_Chr3g0086121 22.830 311 180 7 330 594 33 329 4.13e-14 73.9
Msa1445560 MtrunA17_Chr7g0248571 34.615 182 87 9 343 508 16 181 4.76e-14 73.2
Msa1445560 MtrunA17_Chr8g0348811 32.161 199 96 8 343 513 34 221 6.36e-14 72.4
Msa1445560 MtrunA17_Chr7g0222531 41.758 91 46 1 518 601 30 120 7.09e-14 68.9
Msa1445560 MtrunA17_Chr3g0082421 29.255 188 107 7 343 523 36 204 1.81e-13 72.4
Msa1445560 MtrunA17_Chr2g0280571 35.484 124 66 3 494 605 31 152 1.93e-13 68.6
Msa1445560 MtrunA17_Chr2g0292331 32.086 187 102 8 343 523 58 225 2.06e-13 72.4
Msa1445560 MtrunA17_Chr3g0078231 31.765 170 93 7 343 507 56 207 2.44e-13 72.4
Msa1445560 MtrunA17_Chr6g0470191 30.693 202 113 9 343 535 35 218 2.73e-13 72.0
Msa1445560 MtrunA17_Chr7g0238541 47.917 96 38 5 414 507 24 109 3.93e-13 68.6
Msa1445560 MtrunA17_Chr2g0286221 36.607 112 48 2 239 329 20 129 4.32e-13 68.2
Msa1445560 MtrunA17_Chr6g0470221 30.435 184 106 6 343 520 35 202 6.20e-13 70.9
Msa1445560 MtrunA17_Chr2g0277521 45.679 81 34 2 519 592 155 232 6.74e-13 68.9
Msa1445560 MtrunA17_Chr4g0031611 30.348 201 115 8 327 514 12 200 7.11e-13 69.3
Msa1445560 MtrunA17_Chr1g0201191 31.609 174 89 6 337 503 50 200 7.30e-13 70.9
Msa1445560 MtrunA17_Chr4g0001291 32.530 166 85 6 343 505 6 147 1.38e-12 67.8
Msa1445560 MtrunA17_Chr6g0449371 31.579 190 102 8 337 514 17 190 1.53e-12 69.7
Msa1445560 MtrunA17_Chr7g0236771 37.273 110 60 4 494 597 81 187 1.59e-12 67.0
Msa1445560 MtrunA17_Chr2g0291011 37.705 122 64 6 354 472 1 113 1.88e-12 64.3
Msa1445560 MtrunA17_Chr7g0228801 41.880 117 59 5 343 457 30 139 2.42e-12 65.1
Msa1445560 MtrunA17_Chr2g0308131 33.728 169 81 6 343 508 25 165 2.85e-12 68.6
Msa1445560 MtrunA17_Chr7g0247931 50.575 87 30 3 519 592 182 268 2.91e-12 67.8
Msa1445560 MtrunA17_Chr7g0241041 32.432 185 102 8 343 516 23 195 3.08e-12 68.9
Msa1445560 MtrunA17_Chr2g0303021 26.852 216 133 7 337 548 29 223 3.23e-12 68.6
Msa1445560 MtrunA17_Chr3g0078461 28.235 170 99 6 343 507 59 210 3.50e-12 68.6
Msa1445560 MtrunA17_Chr4g0019271 37.363 91 52 3 518 603 298 388 4.14e-12 68.6
Msa1445560 MtrunA17_Chr4g0019271 31.977 172 90 8 343 505 28 181 4.21e-11 65.1
Msa1445560 MtrunA17_Chr1g0175981 28.500 200 119 6 337 536 53 228 5.88e-12 67.8
Msa1445560 MtrunA17_Chr4g0008891 44.318 88 43 3 518 600 100 186 5.99e-12 65.5
Msa1445560 MtrunA17_Chr4g0004041 44.186 86 41 2 519 597 320 405 6.33e-12 67.8
Msa1445560 MtrunA17_Chr7g0241991 27.092 251 140 8 343 590 79 289 6.57e-12 67.0
Msa1445560 MtrunA17_Chr3g0082441 29.630 189 105 7 343 523 36 204 7.22e-12 67.4
Msa1445560 MtrunA17_Chr3g0078431 28.500 200 106 8 343 525 59 238 7.32e-12 67.8
Msa1445560 MtrunA17_Chr8g0370471 27.976 168 102 7 343 507 37 188 1.03e-11 65.1
Msa1445560 MtrunA17_Chr8g0389201 29.717 212 111 9 343 544 53 236 1.03e-11 67.0
Msa1445560 MtrunA17_Chr3g0080511 30.286 175 92 9 343 507 242 396 1.06e-11 67.8
Msa1445560 MtrunA17_Chr1g0171401 29.808 208 117 10 331 536 51 231 1.09e-11 67.0
Msa1445560 MtrunA17_Chr3g0080501 27.841 176 98 8 343 507 54 211 1.24e-11 67.0
Msa1445560 MtrunA17_Chr2g0291001 40.230 87 42 2 514 593 94 177 1.65e-11 63.9
Msa1445560 MtrunA17_Chr4g0047811 57.143 49 20 1 343 390 19 67 1.74e-11 60.8
Msa1445560 MtrunA17_Chr1g0201221 28.736 174 106 6 337 509 37 193 1.82e-11 66.2
Msa1445560 MtrunA17_Chr7g0237501 41.758 91 41 2 519 597 17 107 1.86e-11 61.6
Msa1445560 MtrunA17_Chr4g0010581 27.957 186 107 5 348 528 15 178 2.13e-11 65.9
Msa1445560 MtrunA17_Chr4g0010531 28.249 177 102 4 337 510 4 158 2.16e-11 65.9
Msa1445560 MtrunA17_Chr4g0027011 29.630 189 112 5 343 523 37 212 2.18e-11 66.2
Msa1445560 MtrunA17_Chr3g0079611 30.481 187 107 9 343 523 49 218 2.20e-11 66.2
Msa1445560 MtrunA17_Chr3g0080191 30.052 193 108 9 343 523 41 218 3.25e-11 65.5
Msa1445560 MtrunA17_Chr2g0318001 34.545 110 69 2 338 446 8 115 4.31e-11 61.6
Msa1445560 MtrunA17_Chr8g0364191 30.645 186 91 9 343 508 29 196 4.94e-11 65.1
Msa1445560 MtrunA17_Chr4g0066111 30.000 230 102 13 337 547 10 199 5.28e-11 62.8
Msa1445560 MtrunA17_Chr3g0078421 27.586 174 106 6 343 515 43 197 5.95e-11 64.7
Msa1445560 MtrunA17_Chr8g0386561 37.805 82 45 3 518 593 2 83 6.98e-11 58.9
Msa1445560 MtrunA17_Chr2g0317081 30.726 179 97 8 343 514 71 229 7.81e-11 62.8
Msa1445560 MtrunA17_Chr7g0228911 27.273 176 97 6 343 508 45 199 9.74e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445560 AT1G21150.1 30.719 306 181 6 40 316 33 336 3.88e-33 131
Msa1445560 AT1G21150.2 30.719 306 181 6 40 316 97 400 9.54e-33 131
Msa1445560 AT5G07900.1 27.273 308 195 4 33 315 46 349 1.23e-32 130
Msa1445560 AT1G21150.3 31.724 290 170 5 53 316 13 300 2.24e-32 128
Msa1445560 AT1G61970.2 26.398 322 168 10 57 317 51 364 2.26e-20 94.4
Msa1445560 AT1G61970.7 26.398 322 168 10 57 317 51 364 2.26e-20 94.4
Msa1445560 AT1G61970.6 26.398 322 168 10 57 317 51 364 2.26e-20 94.4
Msa1445560 AT1G61970.3 26.398 322 168 10 57 317 51 364 2.26e-20 94.4
Msa1445560 AT1G61970.5 26.398 322 168 10 57 317 51 364 2.26e-20 94.4
Msa1445560 AT1G61970.4 26.398 322 168 10 57 317 51 364 2.26e-20 94.4
Msa1445560 AT1G61970.1 26.398 322 168 10 57 317 51 364 2.26e-20 94.4
Msa1445560 AT1G61990.2 26.984 315 160 9 59 315 53 355 2.34e-19 91.3
Msa1445560 AT1G61990.1 26.984 315 160 9 59 315 53 355 2.34e-19 91.3
Msa1445560 AT1G61980.3 25.705 319 170 9 59 317 53 364 1.30e-18 89.0
Msa1445560 AT1G61980.2 25.705 319 170 9 59 317 53 364 1.30e-18 89.0
Msa1445560 AT1G61980.1 25.705 319 170 9 59 317 53 364 1.30e-18 89.0
Msa1445560 AT5G64950.1 25.633 316 204 7 26 315 10 320 1.70e-18 88.6
Msa1445560 AT1G62120.1 26.101 318 168 8 59 315 57 368 5.81e-18 87.4
Msa1445560 AT3G46950.1 29.148 223 147 6 35 256 30 242 1.04e-17 86.7
Msa1445560 AT1G62085.1 28.638 213 138 6 59 267 56 258 1.17e-16 83.6
Msa1445560 AT1G62085.2 28.638 213 138 6 59 267 56 258 1.17e-16 83.6
Msa1445560 AT5G23930.1 29.185 233 152 6 27 256 22 244 3.56e-16 82.0
Msa1445560 AT1G61960.1 29.703 202 135 5 57 256 51 247 3.72e-16 81.6
Msa1445560 AT1G62110.1 29.091 220 143 7 44 258 39 250 1.17e-14 77.0
Msa1445560 AT1G62150.1 28.431 204 136 5 57 256 57 254 1.07e-13 74.3

Find 122 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTTGACGACTGATTT+TGG 0.089239 tig0031139:+35970 Msa1445560:CDS
AAAAGAGGGTTGTTGAATTT+TGG 0.120653 tig0031139:-35427 None:intergenic
TGATTCCTATAACAACTTTA+TGG 0.155706 tig0031139:-35384 None:intergenic
TTAACCGCTCGTTCTCTTTC+TGG 0.164855 tig0031139:+37949 Msa1445560:CDS
CAAACAAGACCATCTATATT+TGG 0.180790 tig0031139:+36024 Msa1445560:CDS
TCGTATCTCATCAATAATTT+TGG 0.189747 tig0031139:+35544 Msa1445560:CDS
CAGAAGCTTCTGAGTGAAAT+TGG 0.201963 tig0031139:-35469 None:intergenic
TTGGAGGAAGTTAAGGGTTT+AGG 0.213631 tig0031139:+36069 Msa1445560:CDS
AAGCTACTTCGTAAAATTCT+AGG 0.214273 tig0031139:-35817 None:intergenic
CCATCTCGTTATATGGAAAA+TGG 0.225427 tig0031139:+38533 Msa1445560:CDS
TGGAGGAAGTTAAGGGTTTA+GGG 0.236533 tig0031139:+36070 Msa1445560:CDS
ATATGGAAAATGGATGAATT+TGG 0.250268 tig0031139:+38543 Msa1445560:CDS
ATAACAGAATCAGGCTTATC+TGG 0.261784 tig0031139:-35625 None:intergenic
CATCCTTCAACAACTACTTT+TGG 0.271023 tig0031139:+36096 Msa1445560:CDS
CTTCTTCTTAAGATGCATTC+TGG 0.277080 tig0031139:-37700 None:intergenic
TGAATTTGCAAGTTTCTTGC+TGG 0.306698 tig0031139:-38034 None:intergenic
AGAAAACCCATCTCGTTATA+TGG 0.310261 tig0031139:+38526 Msa1445560:intron
AAAGATTTGATAGCTGATTC+AGG 0.315111 tig0031139:-35574 None:intergenic
ATCAGAGATGATGGTGTTCC+AGG 0.316766 tig0031139:-37667 None:intergenic
ACCAAGCAATTCTTTACAAT+TGG 0.321254 tig0031139:+38697 Msa1445560:CDS
GATTCCTATAACAACTTTAT+GGG 0.322085 tig0031139:-35383 None:intergenic
TAACTCATTGGAGGAAGTTA+AGG 0.330911 tig0031139:+36062 Msa1445560:CDS
AGAAAACATTTGTGACAGTT+TGG 0.337519 tig0031139:-36321 None:intergenic
ATTGAAGTCAGCATCAAATA+AGG 0.342231 tig0031139:-36233 None:intergenic
ATGTACTCCAATATCGAATT+AGG 0.344018 tig0031139:-35912 None:intergenic
AAAGGATTTGATTAACTCAT+TGG 0.346872 tig0031139:+36050 Msa1445560:CDS
TTGTTTGCCTAATTCGATAT+TGG 0.351222 tig0031139:+35905 Msa1445560:CDS
AAGATGTTATTCATGCATTT+CGG 0.356695 tig0031139:+36204 Msa1445560:intron
AATTTGGAGTTGAAGACTCT+TGG 0.365372 tig0031139:+38559 Msa1445560:CDS
GAATTTGCAAGTTTCTTGCT+GGG 0.384714 tig0031139:-38033 None:intergenic
TCGAAGCCATGTTGAAGAAA+TGG 0.385554 tig0031139:+35353 None:intergenic
AAGAAGGTGATAACAGAATC+AGG 0.386708 tig0031139:-35634 None:intergenic
AAGGAAGATCGTCATCGGTT+AGG 0.386759 tig0031139:-37830 None:intergenic
TCAGATTTAGTCCTTGTGGC+AGG 0.402014 tig0031139:-37975 None:intergenic
CTTTCACTTCAAGAAATGAT+AGG 0.403508 tig0031139:-37614 None:intergenic
AGATGCATTCTGGAGAAGAT+TGG 0.403642 tig0031139:-37690 None:intergenic
AATTGATATTAGACACAATA+AGG 0.406184 tig0031139:-35954 None:intergenic
TTTCTTATAGTTTGGAGAAA+AGG 0.411421 tig0031139:+36339 Msa1445560:CDS
TCTGACAAGTCCAAAGGTTC+CGG 0.412814 tig0031139:+37747 Msa1445560:CDS
AGGAAGATCGTCATCGGTTA+GGG 0.416243 tig0031139:-37829 None:intergenic
ACCATCTATATTTGGTTCAA+AGG 0.427799 tig0031139:+36032 Msa1445560:CDS
GCAAACAATGACATCCTTGT+TGG 0.429184 tig0031139:-35890 None:intergenic
CCTGCTCCATGTAATTATAT+TGG 0.432420 tig0031139:-38751 None:intergenic
CTCTTGCAGAAAACGAGAGC+TGG 0.433313 tig0031139:-37787 None:intergenic
TAGGAATTCATAACTTCGTC+GGG 0.438658 tig0031139:-37595 None:intergenic
TCAATTGGGTTGGAATTCCT+TGG 0.440659 tig0031139:+36292 Msa1445560:CDS
GAGAAGTGTTGGTTGAAAAG+AGG 0.440691 tig0031139:-35442 None:intergenic
CACAATCGTTGTAATTGAAT+CGG 0.440786 tig0031139:-37860 None:intergenic
TCCTTTGAACCAAATATAGA+TGG 0.443491 tig0031139:-36033 None:intergenic
AACTCATTGGAGGAAGTTAA+GGG 0.448139 tig0031139:+36063 Msa1445560:CDS
TTTGGAGAAAAGGATCATTC+CGG 0.451276 tig0031139:+36349 Msa1445560:CDS
TCTACAATCTCCGGAACCTT+TGG 0.452629 tig0031139:-37757 None:intergenic
ATTCCAAAAGTAGTTGTTGA+AGG 0.457781 tig0031139:-36099 None:intergenic
TGAGGAAGATAATCTATTTG+AGG 0.460053 tig0031139:-38612 None:intergenic
CCAATATAATTACATGGAGC+AGG 0.467700 tig0031139:+38751 Msa1445560:CDS
AATGGATTGGTCTGCTTGCA+TGG 0.483073 tig0031139:+37903 Msa1445560:CDS
TCCAATTGTAAAGAATTGCT+TGG 0.493304 tig0031139:-38698 None:intergenic
AACGATTGTGGTGATATTGT+TGG 0.493939 tig0031139:+37873 Msa1445560:CDS
AGCTACTTCGTAAAATTCTA+GGG 0.494414 tig0031139:-35816 None:intergenic
CGTTGTAATTGAATCGGTTG+TGG 0.496055 tig0031139:-37854 None:intergenic
AGAAGTGTTGGTTGAAAAGA+GGG 0.500709 tig0031139:-35441 None:intergenic
TCATAACTTCGTCGGGGAGG+AGG 0.502049 tig0031139:-37588 None:intergenic
AGAAGCTTCTGAGTGAAATT+GGG 0.502779 tig0031139:-35468 None:intergenic
GATATTGTTGGTTCATGCAA+TGG 0.504561 tig0031139:+37885 Msa1445560:CDS
CAGATTTAGTCCTTGTGGCA+GGG 0.504966 tig0031139:-37974 None:intergenic
TTTGGGTCAATCAATTGGGT+TGG 0.506924 tig0031139:+36282 Msa1445560:CDS
TAACAGAATCAGGCTTATCT+GGG 0.509112 tig0031139:-35624 None:intergenic
TAATTGAATCGGTTGTGGTA+AGG 0.523150 tig0031139:-37849 None:intergenic
CAAATCTTTCAACTACAAGC+AGG 0.525391 tig0031139:+35588 Msa1445560:CDS
ATTGCTTTGATGGCCAAGAA+AGG 0.530580 tig0031139:+36120 Msa1445560:CDS
CGATTCAATTACAACGATTG+TGG 0.531029 tig0031139:+37861 Msa1445560:CDS
AGGAGGATTAACGCCGCCGG+TGG 0.531260 tig0031139:-37571 None:intergenic
GAAACTTGCAAATTCACGCT+TGG 0.533820 tig0031139:+38041 Msa1445560:CDS
GCGCTTGAAATAAGAGCAAA+AGG 0.535727 tig0031139:-38009 None:intergenic
TGTTGGTTCATGCAATGGAT+TGG 0.536812 tig0031139:+37890 Msa1445560:CDS
CTACTTAATAATTCAAAACA+AGG 0.538944 tig0031139:-35856 None:intergenic
ATGAGATACGATGCAGCGAA+TGG 0.541068 tig0031139:-35532 None:intergenic
ATCAGAAGAGGAAGCACCGT+TGG 0.542723 tig0031139:-35770 None:intergenic
ATTAGACACAATAAGGCGAT+AGG 0.545180 tig0031139:-35947 None:intergenic
ATTGCATAACTGAGGCCCTC+CGG 0.545428 tig0031139:-36368 None:intergenic
ATAGGAATTCATAACTTCGT+CGG 0.549680 tig0031139:-37596 None:intergenic
TCAAACTCTCAACATTGCCT+TGG 0.550514 tig0031139:-38775 None:intergenic
CATTGCAGCGGAGGATCCAC+CGG 0.550596 tig0031139:+37555 Msa1445560:intron
AATTACATGGAGCAGGGCCA+AGG 0.557012 tig0031139:+38758 Msa1445560:CDS
TGATTCAGATTCAGATGTTG+TGG 0.559545 tig0031139:-35494 None:intergenic
TGACAGTTTGGTAAGTGCCA+AGG 0.560015 tig0031139:-36309 None:intergenic
GGGTACGGCTCTACAATCTC+CGG 0.561676 tig0031139:-37766 None:intergenic
GGATTTGATTAACTCATTGG+AGG 0.570633 tig0031139:+36053 Msa1445560:CDS
TGAAGTGCGTGTGTAAGTCC+TGG 0.571493 tig0031139:+37649 Msa1445560:CDS
AATTTGCAAGTTTCTTGCTG+GGG 0.573187 tig0031139:-38032 None:intergenic
ATTTGCAAGTTTCTTGCTGG+GGG 0.585475 tig0031139:-38031 None:intergenic
TCTTGCAGAAAACGAGAGCT+GGG 0.587805 tig0031139:-37786 None:intergenic
TGTATCAGATTTAGTCCTTG+TGG 0.587817 tig0031139:-37979 None:intergenic
CCATTGTGTCTGTCTGAGGA+TGG 0.588394 tig0031139:+38642 Msa1445560:CDS
AGACACAATGGAATCAATTG+AGG 0.588635 tig0031139:-38630 None:intergenic
CTTTCTGGAACCCTGCCACA+AGG 0.595317 tig0031139:+37964 Msa1445560:CDS
GAAGATTGGATCAGAGATGA+TGG 0.600894 tig0031139:-37676 None:intergenic
GATTCCATTGTGTCTGTCTG+AGG 0.601186 tig0031139:+38638 Msa1445560:CDS
TTGAAGTGAAAGATCTGATG+TGG 0.601717 tig0031139:+37625 Msa1445560:CDS
CTAGGGTATGCAGTTAACAA+TGG 0.602093 tig0031139:-35799 None:intergenic
CAATGGAACAATATCAGAAG+AGG 0.605003 tig0031139:-35782 None:intergenic
TTAGACACAATAAGGCGATA+GGG 0.612715 tig0031139:-35946 None:intergenic
AAAGCACCAATATAATTACA+TGG 0.613368 tig0031139:+38745 Msa1445560:CDS
TACTTAATAATTCAAAACAA+GGG 0.615001 tig0031139:-35855 None:intergenic
AAATTGGGAACGAGAAGTGT+TGG 0.618593 tig0031139:-35453 None:intergenic
CTTCTCTCTGACAAGTCCAA+AGG 0.622553 tig0031139:+37741 Msa1445560:CDS
CAGAAAACGAGAGCTGGGTA+CGG 0.628804 tig0031139:-37781 None:intergenic
GGAGAAAAGGATCATTCCGG+AGG 0.633439 tig0031139:+36352 Msa1445560:CDS
CAAAAGAAATTGCATAACTG+AGG 0.634260 tig0031139:-36376 None:intergenic
GTGGTAAGGAAGATCGTCAT+CGG 0.634465 tig0031139:-37835 None:intergenic
GGGAGGAGGATTAACGCCGC+CGG 0.648595 tig0031139:-37574 None:intergenic
GAGAAAAGGATCATTCCGGA+GGG 0.649160 tig0031139:+36353 Msa1445560:CDS
AATTCATAACTTCGTCGGGG+AGG 0.655538 tig0031139:-37591 None:intergenic
CAATATAATTACATGGAGCA+GGG 0.658170 tig0031139:+38752 Msa1445560:CDS
CCATCCTCAGACAGACACAA+TGG 0.675554 tig0031139:-38642 None:intergenic
GGTTCCAGAAAGAGAACGAG+CGG 0.677180 tig0031139:-37953 None:intergenic
TGCAGCGGAGGATCCACCGG+CGG 0.679381 tig0031139:+37558 Msa1445560:intron
AACAGAATCAGGCTTATCTG+GGG 0.694184 tig0031139:-35623 None:intergenic
TAGGTTCTTGAAAACCAACA+AGG 0.701717 tig0031139:+35876 Msa1445560:CDS
GGTTGGGAAGAAAGTAACCA+AGG 0.719556 tig0031139:-35709 None:intergenic
AGGAATTCATAACTTCGTCG+GGG 0.736028 tig0031139:-37594 None:intergenic
ACTTGTCAGAGAGAAGTGCG+AGG 0.771374 tig0031139:-37734 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0031139:38166-38185 Msa1445560:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0031139:38166-38185 Msa1445560:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0031139:38166-38185 Msa1445560:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0031139:38166-38185 Msa1445560:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0031139:38166-38185 Msa1445560:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0031139:38166-38185 Msa1445560:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0031139:38166-38185 Msa1445560:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+TGG + tig0031139:38166-38185 Msa1445560:intron 100.0%
!! TACTTAATAATTCAAAACAA+GGG - tig0031139:35858-35877 None:intergenic 15.0%
!! AACAAATTTCAAATAGAATA+TGG - tig0031139:36974-36993 None:intergenic 15.0%
!!! TATTCTATTTGAAATTTGTT+TGG + tig0031139:36974-36993 Msa1445560:intron 15.0%
!! CTACTTAATAATTCAAAACA+AGG - tig0031139:35859-35878 None:intergenic 20.0%
!!! CTTGTTTTGAATTATTAAGT+AGG + tig0031139:35857-35876 Msa1445560:CDS 20.0%
!! AATTGATATTAGACACAATA+AGG - tig0031139:35957-35976 None:intergenic 20.0%
!!! ACAAATGTTTTCTTATAGTT+TGG + tig0031139:36331-36350 Msa1445560:CDS 20.0%
!!! CATGTCATAATTAGATTTTA+AGG + tig0031139:36925-36944 Msa1445560:intron 20.0%
!!! ATTTAAGACTGATTAACAAT+AGG - tig0031139:37082-37101 None:intergenic 20.0%
!! TATTGTTAATCAGTCTTAAA+TGG + tig0031139:37081-37100 Msa1445560:intron 20.0%
!!! TTGAATTTTCTTGCATTTAT+GGG + tig0031139:37132-37151 Msa1445560:intron 20.0%
!!! ATTTAAGACTGATAAACAAT+AGG - tig0031139:37196-37215 None:intergenic 20.0%
!!! TTGATTTTACTTGCATTTAT+GGG + tig0031139:37395-37414 Msa1445560:intron 20.0%
!! ATGACTTCATAATAGATTAT+TGG - tig0031139:37469-37488 None:intergenic 20.0%
!! GAATAATAGTATCAATTTGT+TGG + tig0031139:38302-38321 Msa1445560:intron 20.0%
!! TTTTCCCATAAAGTTGTTAT+AGG + tig0031139:35379-35398 Msa1445560:CDS 25.0%
! GATTCCTATAACAACTTTAT+GGG - tig0031139:35386-35405 None:intergenic 25.0%
! TGATTCCTATAACAACTTTA+TGG - tig0031139:35387-35406 None:intergenic 25.0%
!! TCGTATCTCATCAATAATTT+TGG + tig0031139:35544-35563 Msa1445560:CDS 25.0%
! GATAGAAAAAATTGGAACTT+TGG - tig0031139:35751-35770 None:intergenic 25.0%
!!! TTCCAATTTTTTCTATCCAA+CGG + tig0031139:35754-35773 Msa1445560:CDS 25.0%
! AAAGGATTTGATTAACTCAT+TGG + tig0031139:36050-36069 Msa1445560:CDS 25.0%
!! AAAGGTATGAGTAAAAACTT+TGG + tig0031139:36138-36157 Msa1445560:intron 25.0%
! AAGGTATGAGTAAAAACTTT+GGG + tig0031139:36139-36158 Msa1445560:intron 25.0%
!!! AAGTTGATACCTTTAAGAAA+TGG + tig0031139:36168-36187 Msa1445560:intron 25.0%
!! AGTTGATACCTTTAAGAAAT+GGG + tig0031139:36169-36188 Msa1445560:intron 25.0%
! AAGATGTTATTCATGCATTT+CGG + tig0031139:36204-36223 Msa1445560:intron 25.0%
! TTTCTTATAGTTTGGAGAAA+AGG + tig0031139:36339-36358 Msa1445560:CDS 25.0%
!! ATGCAATTTCTTTTGATGAA+AGG + tig0031139:36384-36403 Msa1445560:CDS 25.0%
!! ATTTTCTCAGAATAAGCAAA+TGG - tig0031139:36441-36460 None:intergenic 25.0%
!!! CAAGTTTGTTTTCAGATTTA+AGG + tig0031139:36470-36489 Msa1445560:intron 25.0%
! AATGAAAATTGCATACACAA+TGG + tig0031139:36531-36550 Msa1445560:intron 25.0%
! AAATTCCGCTAATTAATGAA+TGG - tig0031139:36571-36590 None:intergenic 25.0%
! GTTCATCATATGTTTATCAA+AGG + tig0031139:36824-36843 Msa1445560:intron 25.0%
!!! GTTTATCAAAGGTATTAAGA+AGG + tig0031139:36835-36854 Msa1445560:intron 25.0%
!! AATAATTTGCATGTCCTATA+TGG + tig0031139:37104-37123 Msa1445560:intron 25.0%
! AAAATTCAACTTTGCCATAT+AGG - tig0031139:37121-37140 None:intergenic 25.0%
!! GTTGAATTTTCTTGCATTTA+TGG + tig0031139:37131-37150 Msa1445560:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - tig0031139:37356-37375 None:intergenic 25.0%
! TAAGCAAAAAACAACATTCT+AGG + tig0031139:37257-37276 Msa1445560:intron 25.0%
! CATTCATTAAATGATGTATG+TGG - tig0031139:37282-37301 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + tig0031139:37356-37375 Msa1445560:intron 25.0%
!!! GTTGATTTTACTTGCATTTA+TGG + tig0031139:37394-37413 Msa1445560:intron 25.0%
!!! TCAAGTTGAAGAAACTTTTA+GGG - tig0031139:37494-37513 None:intergenic 25.0%
!!! TTCAAGTTGAAGAAACTTTT+AGG - tig0031139:37495-37514 None:intergenic 25.0%
! GACAATAACAAATTGTTCAT+TGG - tig0031139:38361-38380 None:intergenic 25.0%
! ATATGGAAAATGGATGAATT+TGG + tig0031139:38543-38562 Msa1445560:CDS 25.0%
!! GATTCACATGACTAATTTTA+AGG - tig0031139:38593-38612 None:intergenic 25.0%
!! AAAGCACCAATATAATTACA+TGG + tig0031139:38745-38764 Msa1445560:CDS 25.0%
! AAAGAGGGTTGTTGAATTTT+GGG - tig0031139:35429-35448 None:intergenic 30.0%
! AAAAGAGGGTTGTTGAATTT+TGG - tig0031139:35430-35449 None:intergenic 30.0%
! AAAGATTTGATAGCTGATTC+AGG - tig0031139:35577-35596 None:intergenic 30.0%
!! AAAACCATGGTTTTTGAAGA+AGG - tig0031139:35653-35672 None:intergenic 30.0%
! TTTGGCAATAACATTTTGTG+GGG - tig0031139:35733-35752 None:intergenic 30.0%
! CTTTGGCAATAACATTTTGT+GGG - tig0031139:35734-35753 None:intergenic 30.0%
! ACTTTGGCAATAACATTTTG+TGG - tig0031139:35735-35754 None:intergenic 30.0%
AGCTACTTCGTAAAATTCTA+GGG - tig0031139:35819-35838 None:intergenic 30.0%
AAGCTACTTCGTAAAATTCT+AGG - tig0031139:35820-35839 None:intergenic 30.0%
TTGTTTGCCTAATTCGATAT+TGG + tig0031139:35905-35924 Msa1445560:CDS 30.0%
ATGTACTCCAATATCGAATT+AGG - tig0031139:35915-35934 None:intergenic 30.0%
!! ATCAATTTGACGACTGATTT+TGG + tig0031139:35970-35989 Msa1445560:CDS 30.0%
CAAACAAGACCATCTATATT+TGG + tig0031139:36024-36043 Msa1445560:CDS 30.0%
! ACCATCTATATTTGGTTCAA+AGG + tig0031139:36032-36051 Msa1445560:CDS 30.0%
TCCTTTGAACCAAATATAGA+TGG - tig0031139:36036-36055 None:intergenic 30.0%
ATTCCAAAAGTAGTTGTTGA+AGG - tig0031139:36102-36121 None:intergenic 30.0%
!!! TACTTTTGGAATTGCTTTGA+TGG + tig0031139:36110-36129 Msa1445560:CDS 30.0%
! GTTTTTACTCATACCTTTCT+TGG - tig0031139:36136-36155 None:intergenic 30.0%
! GTTGATACCTTTAAGAAATG+GGG + tig0031139:36170-36189 Msa1445560:intron 30.0%
ATTGAAGTCAGCATCAAATA+AGG - tig0031139:36236-36255 None:intergenic 30.0%
!! TTGATTCGTTCATGAGTTTT+TGG + tig0031139:36264-36283 Msa1445560:CDS 30.0%
! TGATTCGTTCATGAGTTTTT+GGG + tig0031139:36265-36284 Msa1445560:CDS 30.0%
!!! AGTTTTTGGGTCAATCAATT+GGG + tig0031139:36278-36297 Msa1445560:CDS 30.0%
AGAAAACATTTGTGACAGTT+TGG - tig0031139:36324-36343 None:intergenic 30.0%
CAAAAGAAATTGCATAACTG+AGG - tig0031139:36379-36398 None:intergenic 30.0%
!! GTTTGTTTTCAGATTTAAGG+AGG + tig0031139:36473-36492 Msa1445560:intron 30.0%
AACTTCTCAGACATTACAAA+AGG - tig0031139:36804-36823 None:intergenic 30.0%
CTCATGCAACTTTAATAGAT+AGG - tig0031139:36867-36886 None:intergenic 30.0%
GAATATGGAATAACATACGA+AGG - tig0031139:36959-36978 None:intergenic 30.0%
GACAAAACAAACATGAAAGA+AGG - tig0031139:37447-37466 None:intergenic 30.0%
! AAGTTGAAGAAACTTTTAGG+GGG - tig0031139:37492-37511 None:intergenic 30.0%
!! CAAGTTGAAGAAACTTTTAG+GGG - tig0031139:37493-37512 None:intergenic 30.0%
ATAGGAATTCATAACTTCGT+CGG - tig0031139:37599-37618 None:intergenic 30.0%
CTTTCACTTCAAGAAATGAT+AGG - tig0031139:37617-37636 None:intergenic 30.0%
CACAATCGTTGTAATTGAAT+CGG - tig0031139:37863-37882 None:intergenic 30.0%
! ACTGCAAGAGATTTTACTTT+GGG + tig0031139:38146-38165 Msa1445560:intron 30.0%
! GGATAATAATAATGCTGCTT+GGG + tig0031139:38207-38226 Msa1445560:intron 30.0%
GAACGAAACAAAAATTACGA+GGG - tig0031139:38263-38282 None:intergenic 30.0%
TGAACGAAACAAAAATTACG+AGG - tig0031139:38264-38283 None:intergenic 30.0%
GAATTGTCTTTGTGTGTTAA+TGG + tig0031139:38476-38495 Msa1445560:intron 30.0%
! CATTTTCCATATAACGAGAT+GGG - tig0031139:38535-38554 None:intergenic 30.0%
TGAGGAAGATAATCTATTTG+AGG - tig0031139:38615-38634 None:intergenic 30.0%
ACCAAGCAATTCTTTACAAT+TGG + tig0031139:38697-38716 Msa1445560:CDS 30.0%
TCCAATTGTAAAGAATTGCT+TGG - tig0031139:38701-38720 None:intergenic 30.0%
CAATATAATTACATGGAGCA+GGG + tig0031139:38752-38771 Msa1445560:CDS 30.0%
! AAGAGGGTTGTTGAATTTTG+GGG - tig0031139:35428-35447 None:intergenic 35.0%
!! AGAAGTGTTGGTTGAAAAGA+GGG - tig0031139:35444-35463 None:intergenic 35.0%
AGAAGCTTCTGAGTGAAATT+GGG - tig0031139:35471-35490 None:intergenic 35.0%
TGATTCAGATTCAGATGTTG+TGG - tig0031139:35497-35516 None:intergenic 35.0%
CAAATCTTTCAACTACAAGC+AGG + tig0031139:35588-35607 Msa1445560:CDS 35.0%
TAACAGAATCAGGCTTATCT+GGG - tig0031139:35627-35646 None:intergenic 35.0%
ATAACAGAATCAGGCTTATC+TGG - tig0031139:35628-35647 None:intergenic 35.0%
AAGAAGGTGATAACAGAATC+AGG - tig0031139:35637-35656 None:intergenic 35.0%
ATCACCTTCTTCAAAAACCA+TGG + tig0031139:35646-35665 Msa1445560:CDS 35.0%
!! TCATCATCAAAAAAGCACCT+TGG + tig0031139:35692-35711 Msa1445560:CDS 35.0%
! CAATAACATTTTGTGGGGTT+GGG - tig0031139:35728-35747 None:intergenic 35.0%
CACCGTTGGATAGAAAAAAT+TGG - tig0031139:35759-35778 None:intergenic 35.0%
CAATGGAACAATATCAGAAG+AGG - tig0031139:35785-35804 None:intergenic 35.0%
TAGGTTCTTGAAAACCAACA+AGG + tig0031139:35876-35895 Msa1445560:CDS 35.0%
TTAGACACAATAAGGCGATA+GGG - tig0031139:35949-35968 None:intergenic 35.0%
ATTAGACACAATAAGGCGAT+AGG - tig0031139:35950-35969 None:intergenic 35.0%
GGATTTGATTAACTCATTGG+AGG + tig0031139:36053-36072 Msa1445560:CDS 35.0%
TAACTCATTGGAGGAAGTTA+AGG + tig0031139:36062-36081 Msa1445560:CDS 35.0%
AACTCATTGGAGGAAGTTAA+GGG + tig0031139:36063-36082 Msa1445560:CDS 35.0%
! CATCCTTCAACAACTACTTT+TGG + tig0031139:36096-36115 Msa1445560:CDS 35.0%
! ATACCTTTAAGAAATGGGGT+TGG + tig0031139:36174-36193 Msa1445560:intron 35.0%
!!! GAGTTTTTGGGTCAATCAAT+TGG + tig0031139:36277-36296 Msa1445560:CDS 35.0%
TTTGGAGAAAAGGATCATTC+CGG + tig0031139:36349-36368 Msa1445560:CDS 35.0%
GCATACACAATGGAAAACAA+TGG + tig0031139:36541-36560 Msa1445560:intron 35.0%
GCATGCCATTCATTAATTAG+CGG + tig0031139:36563-36582 Msa1445560:intron 35.0%
CAAAGTAAGCAAAGCTAAAC+TGG - tig0031139:37018-37037 None:intergenic 35.0%
TAGGAATTCATAACTTCGTC+GGG - tig0031139:37598-37617 None:intergenic 35.0%
TTGAAGTGAAAGATCTGATG+TGG + tig0031139:37625-37644 Msa1445560:CDS 35.0%
CTTCTTCTTAAGATGCATTC+TGG - tig0031139:37703-37722 None:intergenic 35.0%
TAATTGAATCGGTTGTGGTA+AGG - tig0031139:37852-37871 None:intergenic 35.0%
CGATTCAATTACAACGATTG+TGG + tig0031139:37861-37880 Msa1445560:CDS 35.0%
AACGATTGTGGTGATATTGT+TGG + tig0031139:37873-37892 Msa1445560:CDS 35.0%
!! GATATTGTTGGTTCATGCAA+TGG + tig0031139:37885-37904 Msa1445560:CDS 35.0%
TGTATCAGATTTAGTCCTTG+TGG - tig0031139:37982-38001 None:intergenic 35.0%
AATTTGCAAGTTTCTTGCTG+GGG - tig0031139:38035-38054 None:intergenic 35.0%
GAATTTGCAAGTTTCTTGCT+GGG - tig0031139:38036-38055 None:intergenic 35.0%
TGAATTTGCAAGTTTCTTGC+TGG - tig0031139:38037-38056 None:intergenic 35.0%
! GCTTTTCAAAGTTAGCATCA+CGG - tig0031139:38096-38115 None:intergenic 35.0%
CAAAGTAAAATCTCTTGCAG+TGG - tig0031139:38147-38166 None:intergenic 35.0%
! CACTGCAAGAGATTTTACTT+TGG + tig0031139:38145-38164 Msa1445560:intron 35.0%
! CTGCAAGAGATTTTACTTTG+GGG + tig0031139:38147-38166 Msa1445560:intron 35.0%
! TGCAAGAGATTTTACTTTGG+GGG + tig0031139:38148-38167 Msa1445560:intron 35.0%
GGGATAATAATAATGCTGCT+TGG + tig0031139:38206-38225 Msa1445560:intron 35.0%
!! GATTGTTCTTCTTGTTGTTG+CGG - tig0031139:38335-38354 None:intergenic 35.0%
! TTATTGTCTCGCTTGATTTG+AGG + tig0031139:38373-38392 Msa1445560:intron 35.0%
! AGTAAGTAGCTTTTCATTGC+AGG - tig0031139:38433-38452 None:intergenic 35.0%
TTCACTGACACAGAAAGAAA+TGG - tig0031139:38459-38478 None:intergenic 35.0%
AGAAAACCCATCTCGTTATA+TGG + tig0031139:38526-38545 Msa1445560:intron 35.0%
! CCATTTTCCATATAACGAGA+TGG - tig0031139:38536-38555 None:intergenic 35.0%
CCATCTCGTTATATGGAAAA+TGG + tig0031139:38533-38552 Msa1445560:CDS 35.0%
! AATTTGGAGTTGAAGACTCT+TGG + tig0031139:38559-38578 Msa1445560:CDS 35.0%
AGACACAATGGAATCAATTG+AGG - tig0031139:38633-38652 None:intergenic 35.0%
CCTGCTCCATGTAATTATAT+TGG - tig0031139:38754-38773 None:intergenic 35.0%
CCAATATAATTACATGGAGC+AGG + tig0031139:38751-38770 Msa1445560:CDS 35.0%
!! GAGAAGTGTTGGTTGAAAAG+AGG - tig0031139:35445-35464 None:intergenic 40.0%
! AAATTGGGAACGAGAAGTGT+TGG - tig0031139:35456-35475 None:intergenic 40.0%
CAGAAGCTTCTGAGTGAAAT+TGG - tig0031139:35472-35491 None:intergenic 40.0%
AACAGAATCAGGCTTATCTG+GGG - tig0031139:35626-35645 None:intergenic 40.0%
TGTTGTCGTGTGAAAAACCA+TGG - tig0031139:35666-35685 None:intergenic 40.0%
! GCAATAACATTTTGTGGGGT+TGG - tig0031139:35729-35748 None:intergenic 40.0%
CTAGGGTATGCAGTTAACAA+TGG - tig0031139:35802-35821 None:intergenic 40.0%
GCAAACAATGACATCCTTGT+TGG - tig0031139:35893-35912 None:intergenic 40.0%
TTGGAGGAAGTTAAGGGTTT+AGG + tig0031139:36069-36088 Msa1445560:CDS 40.0%
TGGAGGAAGTTAAGGGTTTA+GGG + tig0031139:36070-36089 Msa1445560:CDS 40.0%
! ATTGCTTTGATGGCCAAGAA+AGG + tig0031139:36120-36139 Msa1445560:CDS 40.0%
AGACCAACCCCATTTCTTAA+AGG - tig0031139:36180-36199 None:intergenic 40.0%
!! TTTAAGAAATGGGGTTGGTC+TGG + tig0031139:36179-36198 Msa1445560:intron 40.0%
TTTGGGTCAATCAATTGGGT+TGG + tig0031139:36282-36301 Msa1445560:CDS 40.0%
!! TCAATTGGGTTGGAATTCCT+TGG + tig0031139:36292-36311 Msa1445560:CDS 40.0%
ATGAGTGTGAAGTTGTGGTA+TGG - tig0031139:36629-36648 None:intergenic 40.0%
!! GAAGCTTTGAGTGCGAATTT+AGG - tig0031139:36685-36704 None:intergenic 40.0%
TCCAAACAACGTCGTTTCAA+AGG + tig0031139:36703-36722 Msa1445560:intron 40.0%
!! TCCTTTGAAACGACGTTGTT+TGG - tig0031139:36707-36726 None:intergenic 40.0%
AATTGCACAAAAGCTGCTCT+TGG - tig0031139:36735-36754 None:intergenic 40.0%
AACTCAACCTTGCATACACA+TGG + tig0031139:36891-36910 Msa1445560:intron 40.0%
ACTCAACCTTGCATACACAT+GGG + tig0031139:36892-36911 Msa1445560:intron 40.0%
! TTTTGTCCCATGTGTATGCA+AGG - tig0031139:36901-36920 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG - tig0031139:37360-37379 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - tig0031139:37359-37378 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + tig0031139:37359-37378 Msa1445560:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + tig0031139:37360-37379 Msa1445560:intron 40.0%
AGGAATTCATAACTTCGTCG+GGG - tig0031139:37597-37616 None:intergenic 40.0%
GAAGATTGGATCAGAGATGA+TGG - tig0031139:37679-37698 None:intergenic 40.0%
! AGATGCATTCTGGAGAAGAT+TGG - tig0031139:37693-37712 None:intergenic 40.0%
CGTTGTAATTGAATCGGTTG+TGG - tig0031139:37857-37876 None:intergenic 40.0%
!! TGTTGGTTCATGCAATGGAT+TGG + tig0031139:37890-37909 Msa1445560:CDS 40.0%
GCGCTTGAAATAAGAGCAAA+AGG - tig0031139:38012-38031 None:intergenic 40.0%
ATTTGCAAGTTTCTTGCTGG+GGG - tig0031139:38034-38053 None:intergenic 40.0%
GAAACTTGCAAATTCACGCT+TGG + tig0031139:38041-38060 Msa1445560:CDS 40.0%
ATGACAACCTTGTAGCTGTA+GGG + tig0031139:38117-38136 Msa1445560:intron 40.0%
! GCAAGAGATTTTACTTTGGG+GGG + tig0031139:38149-38168 Msa1445560:intron 40.0%
!! CAAGAGATTTTACTTTGGGG+GGG + tig0031139:38150-38169 Msa1445560:intron 40.0%
!! AAGAGATTTTACTTTGGGGG+GGG + tig0031139:38151-38170 Msa1445560:intron 40.0%
! GCTTTTCATTGCAGGATTGA+GGG - tig0031139:38425-38444 None:intergenic 40.0%
! AGCTTTTCATTGCAGGATTG+AGG - tig0031139:38426-38445 None:intergenic 40.0%
TCAAACTCTCAACATTGCCT+TGG - tig0031139:38778-38797 None:intergenic 40.0%
ATGAGATACGATGCAGCGAA+TGG - tig0031139:35535-35554 None:intergenic 45.0%
GGTTGGGAAGAAAGTAACCA+AGG - tig0031139:35712-35731 None:intergenic 45.0%
TGACAGTTTGGTAAGTGCCA+AGG - tig0031139:36312-36331 None:intergenic 45.0%
GAGAAAAGGATCATTCCGGA+GGG + tig0031139:36353-36372 Msa1445560:CDS 45.0%
! TGGTATGGACTAACAAGCTG+AGG - tig0031139:36614-36633 None:intergenic 45.0%
GGTGAATGAGTGTGAAGTTG+TGG - tig0031139:36634-36653 None:intergenic 45.0%
CCGAATTTGTCGATGAGACA+CGG - tig0031139:36655-36674 None:intergenic 45.0%
CCGTGTCTCATCGACAAATT+CGG + tig0031139:36652-36671 Msa1445560:intron 45.0%
TGCATGTACTATACACCCTC+CGG + tig0031139:37225-37244 Msa1445560:intron 45.0%
AATTCATAACTTCGTCGGGG+AGG - tig0031139:37594-37613 None:intergenic 45.0%
! ATCAGAGATGATGGTGTTCC+AGG - tig0031139:37670-37689 None:intergenic 45.0%
CTTCTCTCTGACAAGTCCAA+AGG + tig0031139:37741-37760 Msa1445560:CDS 45.0%
TCTGACAAGTCCAAAGGTTC+CGG + tig0031139:37747-37766 Msa1445560:CDS 45.0%
TCTACAATCTCCGGAACCTT+TGG - tig0031139:37760-37779 None:intergenic 45.0%
TCTTGCAGAAAACGAGAGCT+GGG - tig0031139:37789-37808 None:intergenic 45.0%
! AGGAAGATCGTCATCGGTTA+GGG - tig0031139:37832-37851 None:intergenic 45.0%
! AAGGAAGATCGTCATCGGTT+AGG - tig0031139:37833-37852 None:intergenic 45.0%
GTGGTAAGGAAGATCGTCAT+CGG - tig0031139:37838-37857 None:intergenic 45.0%
!! AATGGATTGGTCTGCTTGCA+TGG + tig0031139:37903-37922 Msa1445560:CDS 45.0%
TTAACCGCTCGTTCTCTTTC+TGG + tig0031139:37949-37968 Msa1445560:CDS 45.0%
CAGATTTAGTCCTTGTGGCA+GGG - tig0031139:37977-37996 None:intergenic 45.0%
TCAGATTTAGTCCTTGTGGC+AGG - tig0031139:37978-37997 None:intergenic 45.0%
GATGACAACCTTGTAGCTGT+AGG + tig0031139:38116-38135 Msa1445560:intron 45.0%
! TGGTTTTCCCTACAGCTACA+AGG - tig0031139:38127-38146 None:intergenic 45.0%
!! AGAGATTTTACTTTGGGGGG+GGG + tig0031139:38152-38171 Msa1445560:intron 45.0%
CGACTACAACGGGAAAACAA+TGG - tig0031139:38239-38258 None:intergenic 45.0%
ATTACGAGGGACGACTACAA+CGG - tig0031139:38250-38269 None:intergenic 45.0%
GATTCCATTGTGTCTGTCTG+AGG + tig0031139:38638-38657 Msa1445560:CDS 45.0%
!! ATCAGAAGAGGAAGCACCGT+TGG - tig0031139:35773-35792 None:intergenic 50.0%
GGAGAAAAGGATCATTCCGG+AGG + tig0031139:36352-36371 Msa1445560:CDS 50.0%
ATTGCATAACTGAGGCCCTC+CGG - tig0031139:36371-36390 None:intergenic 50.0%
CAACTTTGACATGCACCCTC+CGG - tig0031139:37378-37397 None:intergenic 50.0%
TGAAGTGCGTGTGTAAGTCC+TGG + tig0031139:37649-37668 Msa1445560:CDS 50.0%
! ACTTGTCAGAGAGAAGTGCG+AGG - tig0031139:37737-37756 None:intergenic 50.0%
CAGAAAACGAGAGCTGGGTA+CGG - tig0031139:37784-37803 None:intergenic 50.0%
CTCTTGCAGAAAACGAGAGC+TGG - tig0031139:37790-37809 None:intergenic 50.0%
GGTTCCAGAAAGAGAACGAG+CGG - tig0031139:37956-37975 None:intergenic 50.0%
!! GAGATTTTACTTTGGGGGGG+GGG + tig0031139:38153-38172 Msa1445560:intron 50.0%
!! AGATTTTACTTTGGGGGGGG+GGG + tig0031139:38154-38173 Msa1445560:intron 50.0%
TTACGAGGGACGACTACAAC+GGG - tig0031139:38249-38268 None:intergenic 50.0%
CCATCCTCAGACAGACACAA+TGG - tig0031139:38645-38664 None:intergenic 50.0%
CCATTGTGTCTGTCTGAGGA+TGG + tig0031139:38642-38661 Msa1445560:CDS 50.0%
AATTACATGGAGCAGGGCCA+AGG + tig0031139:38758-38777 Msa1445560:CDS 50.0%
CAATGAGCGGAGGAGGAAGA+GGG - tig0031139:37540-37559 None:intergenic 55.0%
TCATAACTTCGTCGGGGAGG+AGG - tig0031139:37591-37610 None:intergenic 55.0%
GGGTACGGCTCTACAATCTC+CGG - tig0031139:37769-37788 None:intergenic 55.0%
!! CTTTCTGGAACCCTGCCACA+AGG + tig0031139:37964-37983 Msa1445560:CDS 55.0%
!! GATTTTACTTTGGGGGGGGG+GGG + tig0031139:38155-38174 Msa1445560:intron 55.0%
!! ATTTTACTTTGGGGGGGGGG+GGG + tig0031139:38156-38175 Msa1445560:intron 55.0%
GCAATGAGCGGAGGAGGAAG+AGG - tig0031139:37541-37560 None:intergenic 60.0%
TCCTCCTCCGCTCATTGCAG+CGG + tig0031139:37543-37562 Msa1445560:intron 60.0%
GGATCCTCCGCTGCAATGAG+CGG - tig0031139:37553-37572 None:intergenic 60.0%
CATTGCAGCGGAGGATCCAC+CGG + tig0031139:37555-37574 Msa1445560:intron 60.0%
!! TTTTACTTTGGGGGGGGGGG+GGG + tig0031139:38157-38176 Msa1445560:intron 60.0%
TCCGCTGCAATGAGCGGAGG+AGG - tig0031139:37547-37566 None:intergenic 65.0%
TCCTCCGCTCATTGCAGCGG+AGG + tig0031139:37546-37565 Msa1445560:intron 65.0%
TCCTCCGCTGCAATGAGCGG+AGG - tig0031139:37550-37569 None:intergenic 65.0%
AGGAGGATTAACGCCGCCGG+TGG - tig0031139:37574-37593 None:intergenic 65.0%
GGGAGGAGGATTAACGCCGC+CGG - tig0031139:37577-37596 None:intergenic 65.0%
! TTTACTTTGGGGGGGGGGGG+GGG + tig0031139:38158-38177 Msa1445560:intron 65.0%
TGCAGCGGAGGATCCACCGG+CGG + tig0031139:37558-37577 Msa1445560:intron 70.0%
! TTACTTTGGGGGGGGGGGGG+GGG + tig0031139:38159-38178 Msa1445560:intron 70.0%
! TACTTTGGGGGGGGGGGGGG+GGG + tig0031139:38160-38179 Msa1445560:intron 75.0%
!! ACTTTGGGGGGGGGGGGGGG+GGG + tig0031139:38161-38180 Msa1445560:intron 80.0%
!! CTTTGGGGGGGGGGGGGGGG+GGG + tig0031139:38162-38181 Msa1445560:intron 85.0%
! TTTGGGGGGGGGGGGGGGGG+GGG + tig0031139:38163-38182 Msa1445560:intron 85.0%
! TTGGGGGGGGGGGGGGGGGG+GGG + tig0031139:38164-38183 Msa1445560:intron 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG + tig0031139:38165-38184 Msa1445560:intron 95.0%
! GGGGGGGGGGGGGGGGGGGT+GGG + tig0031139:38176-38195 Msa1445560:intron 95.0%
! GGGGGGGGGGGGGGGGGGTG+GGG + tig0031139:38177-38196 Msa1445560:intron 95.0%
! GGGGGGGGGGGGGGGGGTGG+GGG + tig0031139:38178-38197 Msa1445560:intron 95.0%
! GGGGGGGGGGGGGGGGTGGG+GGG + tig0031139:38179-38198 Msa1445560:intron 95.0%
! GGGGGGGGGGGGGGGTGGGG+GGG + tig0031139:38180-38199 Msa1445560:intron 95.0%
! GGGGGGGGGGGGGGTGGGGG+GGG + tig0031139:38181-38200 Msa1445560:intron 95.0%
! GGGGGGGGGGGGGTGGGGGG+GGG + tig0031139:38182-38201 Msa1445560:intron 95.0%
! GGGGGGGGGGGGTGGGGGGG+GGG + tig0031139:38183-38202 Msa1445560:intron 95.0%
! GGGGGGGGGGGTGGGGGGGG+GGG + tig0031139:38184-38203 Msa1445560:intron 95.0%
! GGGGGGGGGGTGGGGGGGGG+GGG + tig0031139:38185-38204 Msa1445560:intron 95.0%
! GGGGGGGGGTGGGGGGGGGG+GGG + tig0031139:38186-38205 Msa1445560:intron 95.0%
Chromosome Type Strat End Strand Name
tig0031139 gene 35361 38797 35361 ID=Msa1445560;Name=Msa1445560
tig0031139 mRNA 35361 38797 35361 ID=Msa1445560-mRNA-1;Parent=Msa1445560;Name=Msa1445560-mRNA-1;_AED=0.55;_eAED=0.56;_QI=0|0|0|0.5|1|1|4|0|606
tig0031139 exon 35361 36141 35361 ID=Msa1445560-mRNA-1:exon:15035;Parent=Msa1445560-mRNA-1
tig0031139 exon 36207 36405 36207 ID=Msa1445560-mRNA-1:exon:15036;Parent=Msa1445560-mRNA-1
tig0031139 exon 37563 38133 37563 ID=Msa1445560-mRNA-1:exon:15037;Parent=Msa1445560-mRNA-1
tig0031139 exon 38528 38797 38528 ID=Msa1445560-mRNA-1:exon:15038;Parent=Msa1445560-mRNA-1
tig0031139 CDS 35361 36141 35361 ID=Msa1445560-mRNA-1:cds;Parent=Msa1445560-mRNA-1
tig0031139 CDS 36207 36405 36207 ID=Msa1445560-mRNA-1:cds;Parent=Msa1445560-mRNA-1
tig0031139 CDS 37563 38133 37563 ID=Msa1445560-mRNA-1:cds;Parent=Msa1445560-mRNA-1
tig0031139 CDS 38528 38797 38528 ID=Msa1445560-mRNA-1:cds;Parent=Msa1445560-mRNA-1
Gene Sequence

>Msa1445560

ATGTTGAAGAAATGGTTTTTTTCCCATAAAGTTGTTATAGGAATCATCACAGCAAAATCAACAACCCCAAAATTCAACAACCCTCTTTTCAACCAACACTTCTCGTTCCCAATTTCACTCAGAAGCTTCTGCACCACAACATCTGAATCTGAATCAGAATCAGTCACAAATCCATTCGCTGCATCGTATCTCATCAATAATTTTGGTTTCACTCCTGAATCAGCTATCAAATCTTTCAACTACAAGCAGGTTCGTTTCAATACCCCAGATAAGCCTGATTCTGTTATCACCTTCTTCAAAAACCATGGTTTTTCACACGACAACATACGCATCATCATCAAAAAAGCACCTTGGTTACTTTCTTCCCAACCCCACAAAATGTTATTGCCAAAGTTCCAATTTTTTCTATCCAACGGTGCTTCCTCTTCTGATATTGTTCCATTGTTAACTGCATACCCTAGAATTTTACGAAGTAGCTTGAAGAAACTAATAATCCCTTGTTTTGAATTATTAAGTAGGTTCTTGAAAACCAACAAGGATGTCATTGTTTGCCTAATTCGATATTGGAGTACATTTTCTACTAATCCCTATCGCCTTATTGTGTCTAATATCAATTTGACGACTGATTTTGGAGTTTCTGATTCTATCATCGCTAATTTGCTTCAAACAAGACCATCTATATTTGGTTCAAAGGATTTGATTAACTCATTGGAGGAAGTTAAGGGTTTAGGGTTTCATCCTTCAACAACTACTTTTGGAATTGCTTTGATGGCCAAGAAAGATGTTATTCATGCATTTCGGATGCAGCCTTATTTGATGCTGACTTCAATTGATAAGATTGATTCGTTCATGAGTTTTTGGGTCAATCAATTGGGTTGGAATTCCTTGGCACTTACCAAACTGTCACAAATGTTTTCTTATAGTTTGGAGAAAAGGATCATTCCGGAGGGCCTCAGTTATGCAATTTCTTTTGATGAAAGCGGAGGATCCACCGGCGGCGTTAATCCTCCTCCCCGACGAAGTTATGAATTCCTATCATTTCTTGAAGTGAAAGATCTGATGTGGATGAAGTGCGTGTGTAAGTCCTGGAACACCATCATCTCTGATCCAATCTTCTCCAGAATGCATCTTAAGAAGAAGAAGAAGCAACACCTCGCACTTCTCTCTGACAAGTCCAAAGGTTCCGGAGATTGTAGAGCCGTACCCAGCTCTCGTTTTCTGCAAGAGATGAATACATTTTCATCATCCCTAACCGATGACGATCTTCCTTACCACAACCGATTCAATTACAACGATTGTGGTGATATTGTTGGTTCATGCAATGGATTGGTCTGCTTGCATGGTTGTTCTTTCACTGCTAACTATATTAACCGCTCGTTCTCTTTCTGGAACCCTGCCACAAGGACTAAATCTGATACATTACTGTCCTTTTGCTCTTATTTCAAGCGCCCCCAGCAAGAAACTTGCAAATTCACGCTTGGTTTTGATAATTCAACAGACACTTTCAAGACCGTGATGCTAACTTTGAAAAGCGATGACAACCTTGTAGCTAAAACCCATCTCGTTATATGGAAAATGGATGAATTTGGAGTTGAAGACTCTTGGACTCAATTCCTTAAAATTAGTCATGTGAATCCTCAAATAGATTATCTTCCTCAATTGATTCCATTGTGTCTGTCTGAGGATGGTGATACACTCATATTTTCAATCAATCAAGCAGACCAAGCAATTCTTTACAATTGGAAAGATAATAGAGTAAAGAGAATCAAAAGCACCAATATAATTACATGGAGCAGGGCCAAGGCAATGTTGAGAGTTTGA
Protein sequence

>Msa1445560

MLKKWFFSHKVVIGIITAKSTTPKFNNPLFNQHFSFPISLRSFCTTTSESESESVTNPFAASYLINNFGFTPESAIKSFNYKQVRFNTPDKPDSVITFFKNHGFSHDNIRIIIKKAPWLLSSQPHKMLLPKFQFFLSNGASSSDIVPLLTAYPRILRSSLKKLIIPCFELLSRFLKTNKDVIVCLIRYWSTFSTNPYRLIVSNINLTTDFGVSDSIIANLLQTRPSIFGSKDLINSLEEVKGLGFHPSTTTFGIALMAKKDVIHAFRMQPYLMLTSIDKIDSFMSFWVNQLGWNSLALTKLSQMFSYSLEKRIIPEGLSYAISFDESGGSTGGVNPPPRRSYEFLSFLEVKDLMWMKCVCKSWNTIISDPIFSRMHLKKKKKQHLALLSDKSKGSGDCRAVPSSRFLQEMNTFSSSLTDDDLPYHNRFNYNDCGDIVGSCNGLVCLHGCSFTANYINRSFSFWNPATRTKSDTLLSFCSYFKRPQQETCKFTLGFDNSTDTFKTVMLTLKSDDNLVAKTHLVIWKMDEFGVEDSWTQFLKISHVNPQIDYLPQLIPLCLSEDGDTLIFSINQADQAILYNWKDNRVKRIKSTNIITWSRAKAMLRV*