AlfalfaGEDB | Msa1446430

M. sativa cultivar zhongmu-4 / Msa1446430

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009292 GO:0009294 GO:0009507 GO:0009536 GO:0009555 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0046976 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051704 GO:0051726 GO:0060255 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:2000112
PFAM: PF00628.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1446430	sp\|B9RU15\|ATXR5_RICCO	62.169	378	137	4	119	495	2	374	3.77e-164	472
Msa1446430	sp\|B9RU15\|ATXR5_RICCO	70.149	67	20	0	42	108	43	109	3.77e-27	115

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1446430	G7JBG7	59.292	113	36	2	3	105	8	120	4.76e-30	131
Msa1446430	G7JBG7	94.574	387	14	3	114	495	6	390	0.0	748

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TFs/TRs:

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Gene ID	Type	Classification
Msa1446430	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1446430	MtrunA17_Chr3g0129881	94.574	387	14	3	114	495	6	390	0.0	748
Msa1446430	MtrunA17_Chr3g0129881	59.292	113	36	2	3	105	8	120	9.16e-34	131
Msa1446430	MtrunA17_Chr1g0146731	60.625	320	122	2	177	495	26	342	9.55e-136	395
Msa1446430	MtrunA17_Chr1g0146731	45.312	64	35	0	42	105	10	73	6.23e-14	73.2
Msa1446430	MtrunA17_Chr1g0146761	52.174	322	117	4	177	495	73	360	1.71e-111	334
Msa1446430	MtrunA17_Chr3g0129871	93.421	76	5	0	39	114	1	76	1.88e-46	156
Msa1446430	MtrunA17_Chr3g0129871	75.806	62	14	1	163	224	7	67	1.84e-28	107
Msa1446430	MtrunA17_Chr1g0146751	55.469	128	57	0	338	465	69	196	1.26e-42	150
Msa1446430	MtrunA17_Chr1g0146741	49.367	158	55	2	273	415	30	177	8.72e-37	134
Msa1446430	MtrunA17_Chr8g0357751	55.340	103	45	1	338	439	14	116	8.82e-32	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1446430	AT5G09790.2	65.109	321	109	2	175	495	62	379	1.21e-154	445
Msa1446430	AT5G09790.2	52.577	97	36	3	16	105	18	111	5.81e-22	97.8
Msa1446430	AT5G09790.1	64.798	321	109	2	175	495	62	378	1.67e-153	442
Msa1446430	AT5G09790.1	52.577	97	36	3	16	105	18	111	5.85e-22	97.8
Msa1446430	AT5G24330.1	60.063	318	124	2	179	495	34	349	2.30e-132	387
Msa1446430	AT5G24330.1	69.565	46	14	0	60	105	34	79	8.29e-17	82.4
Msa1446430	AT1G63490.2	45.161	62	34	0	44	105	225	286	9.20e-11	65.1
Msa1446430	AT1G63490.4	45.161	62	34	0	44	105	225	286	9.36e-11	65.1

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Find 151 sgRNAs with CRISPR-Local

Find 503 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGTCCTAATTCTAT+AGG	0.300279	tig0031362:-24038	None:intergenic
AACAATCGTGCTTCTTCTCA+GGG	0.545517	tig0031362:+20902	Msa1446430:CDS
AACATTGCTCGCTTCATCAG+TGG	0.600548	tig0031362:+23523	Msa1446430:CDS
AAGAAAATTCTCCATTTCTT+CGG	0.317251	tig0031362:+20851	Msa1446430:CDS
AAGCTGGTTAGCTTACGAGG+GGG	0.759841	tig0031362:-15483	None:intergenic
AATAAGCTGACGTACTTTCC+AGG	0.362677	tig0031362:+22951	Msa1446430:CDS
AATTACTAAGCCACATAATT+AGG	0.308654	tig0031362:-24188	None:intergenic
AATTTATATGCAGGGAAGGC+AGG	0.471087	tig0031362:+23837	Msa1446430:intron
AATTTCTTAAAGTGTTACTG+TGG	0.552157	tig0031362:+24133	Msa1446430:three_prime_UTR
ACATAATTAGGCCAGCTATA+TGG	0.389430	tig0031362:-24176	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTACTTAAACATACATGCAT+AGG	-	tig0031362:16044-16063	None:intergenic	30.0%
ATTGGAAATTGAGAAAATGG+TGG	+	tig0031362:16641-16660	Msa1446430:intron	30.0%
GAAACTACAGAGAGAAAATA+CGG	-	tig0031362:16817-16836	None:intergenic	30.0%
GAATATGCTAGAAAATAACG+AGG	+	tig0031362:16864-16883	Msa1446430:intron	30.0%
ACCTTCATTTGTTTGAATCA+AGG	+	tig0031362:16900-16919	Msa1446430:intron	30.0%
CCTTCATTTGTTTGAATCAA+GGG	+	tig0031362:16901-16920	Msa1446430:intron	30.0%
TTAACTACGAATCACACTAA+AGG	-	tig0031362:17098-17117	None:intergenic	30.0%
ATTGAAAGTTGAAAAGCAAG+TGG	+	tig0031362:17295-17314	Msa1446430:intron	30.0%
AACTATCTCATTAGCATATG+TGG	-	tig0031362:17337-17356	None:intergenic	30.0%
ATGAGATAGTTGTTCAGAAA+TGG	+	tig0031362:17346-17365	Msa1446430:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0031362	gene	15440	24349	15440	ID=Msa1446430;Name=Msa1446430
tig0031362	mRNA	15440	24349	15440	ID=Msa1446430-mRNA-1;Parent=Msa1446430;Name=Msa1446430-mRNA-1;_AED=0.05;_eAED=0.05;_QI=25\|0.62\|0.55\|1\|0.75\|0.66\|9\|340\|495
tig0031362	exon	15440	15574	15440	ID=Msa1446430-mRNA-1:exon:15405;Parent=Msa1446430-mRNA-1
tig0031362	exon	15581	15810	15581	ID=Msa1446430-mRNA-1:exon:15406;Parent=Msa1446430-mRNA-1
tig0031362	exon	20356	20501	20356	ID=Msa1446430-mRNA-1:exon:15407;Parent=Msa1446430-mRNA-1
tig0031362	exon	20517	20730	20517	ID=Msa1446430-mRNA-1:exon:15408;Parent=Msa1446430-mRNA-1
tig0031362	exon	20840	20923	20840	ID=Msa1446430-mRNA-1:exon:15409;Parent=Msa1446430-mRNA-1
tig0031362	exon	22796	23025	22796	ID=Msa1446430-mRNA-1:exon:15410;Parent=Msa1446430-mRNA-1
tig0031362	exon	23157	23257	23157	ID=Msa1446430-mRNA-1:exon:15411;Parent=Msa1446430-mRNA-1
tig0031362	exon	23351	23563	23351	ID=Msa1446430-mRNA-1:exon:15412;Parent=Msa1446430-mRNA-1
tig0031362	exon	23850	24349	23850	ID=Msa1446430-mRNA-1:exon:15413;Parent=Msa1446430-mRNA-1
tig0031362	five_prime_UTR	15440	15464	15440	ID=Msa1446430-mRNA-1:five_prime_utr;Parent=Msa1446430-mRNA-1
tig0031362	CDS	15465	15574	15465	ID=Msa1446430-mRNA-1:cds;Parent=Msa1446430-mRNA-1
tig0031362	CDS	15581	15810	15581	ID=Msa1446430-mRNA-1:cds;Parent=Msa1446430-mRNA-1
tig0031362	CDS	20356	20501	20356	ID=Msa1446430-mRNA-1:cds;Parent=Msa1446430-mRNA-1
tig0031362	CDS	20517	20730	20517	ID=Msa1446430-mRNA-1:cds;Parent=Msa1446430-mRNA-1
tig0031362	CDS	20840	20923	20840	ID=Msa1446430-mRNA-1:cds;Parent=Msa1446430-mRNA-1
tig0031362	CDS	22796	23025	22796	ID=Msa1446430-mRNA-1:cds;Parent=Msa1446430-mRNA-1
tig0031362	CDS	23157	23257	23157	ID=Msa1446430-mRNA-1:cds;Parent=Msa1446430-mRNA-1
tig0031362	CDS	23351	23563	23351	ID=Msa1446430-mRNA-1:cds;Parent=Msa1446430-mRNA-1
tig0031362	CDS	23850	24009	23850	ID=Msa1446430-mRNA-1:cds;Parent=Msa1446430-mRNA-1
tig0031362	three_prime_UTR	24010	24349	24010	ID=Msa1446430-mRNA-1:three_prime_utr;Parent=Msa1446430-mRNA-1

Gene Sequence

>Msa1446430

ATGTATTCCTCGCCACCTCCCCCTCGTAAGCTAACCAGCTTCACCCGCCGCACACATGCACCGTGCCACCGAAAGAAGAAGCCAACAGACTCGTCATCGCGGGTGACGAAGACGATGACTAATATAATGGCGAGGGCTAAATATGCAGTGGTTGAGAAGGAGGATTACAGTGACTGCATGTGTGAGCGATGTGGATCTGGTGAACAACCTGAGGAGCTTTTGTTGTGTGACAAATGCGACAAAGGTTTTCATATGAAGTGTCTGAGACCGGTTCTGGCTAGAGTTCCTATTGGTTCATGGATTTGCCCCAAGTGTTGTTCTGAGCTGGAGAGAGTGAAAACTCCGGCGTCTCCATCGCCGTCTTCCATCAAGCTATCAAGCTTAATCCGCCGCACCCATGCACCTCACAAAATTCAAAAGAAGCTGTCATACTCCTCCTCATCCTCCACCTTCGAGGAGGAGGAGGGGAATAAGTTACTATCGCTTAGGGCTGAGTACACGGTGGCTGAGGAGGAGGAGGATTACGGTGACCTCCTGTGTGAGCAATGTGGGTCCGGTGAACAACCGGAGGAGCTGCTTTTGTGTGACAAATGTGACAATGGTTTTCATATGAAATGTGTCAGACCAATTGTTGTTCGAGTTCCGATTGGTCCGTGGATTTGCCCGAGGTGTTCTGATGTCAAGGTCAAGAAACTCAAAAAGCTTTCTCAGAAGAAAATTCTCCATTTCTTCGGGCTTCGTAGGGATTCTCTTGATTCCGGGAACAATCGTGCTTCTTCTCAGGATGCTATGAAGCGTCGGAGACGTCCAAGACCTCTGGTGGTACAGAAGAAAAGGAGAAGGCTTTTACCATTTGTTCCTACAGAAGATCCTGATAGGAGGCTGAAGCAAATGGCTTCCCTTGCTACTGCTTTAACAGCATTGGATATAGAGTTCAGTAATAAGCTGACGTACTTTCCAGGAATGGCTCCTAGATCTGCTAATCGATCCATTTTAGAGAACGGTGGCATGCAGGCTCTTACTAAGGAAGATACAAAGACCTTAAAACGCTGCATAGCTATGACTAAACGAGGCCAATTCCCTCCCTTATTGGTCGTTTATGATTCATGCCAAGGCTATACTGTGGAGGCTGATAGCCCAATCAAAGATATGACATTTATTGCTGAATACACTGGCGATGTTGATTATATAAAGAAGCGAGAATCTGATGATTGTGACAGTATGATGACGCTGATTATTGCAGCAAAAGCTGCTGACAGTCTTGTTATCTGTGCTGATAAACGTGGAAACATTGCTCGCTTCATCAGTGGCATCAACAATCATACTCAGGAAGGCAGGAAGAAGCAGAACTGTAAATGTGTGAGATATGATGTTAATGGTGAAAGCCGGGTCTTATTGGTTGCTACTCGAGATATTTCCAAGGGGGAGAGGCTTTATTATGACTATAATGGTTATGTGCATGAATACCCAACTCATCATTTTGTCTGA

Protein sequence

>Msa1446430

MYSSPPPPRKLTSFTRRTHAPCHRKKKPTDSSSRVTKTMTNIMARAKYAVVEKEDYSDCMCERCGSGEQPEELLLCDKCDKGFHMKCLRPVLARVPIGSWICPKCCSELERVKTPASPSPSSIKLSSLIRRTHAPHKIQKKLSYSSSSSTFEEEEGNKLLSLRAEYTVAEEEEDYGDLLCEQCGSGEQPEELLLCDKCDNGFHMKCVRPIVVRVPIGPWICPRCSDVKVKKLKKLSQKKILHFFGLRRDSLDSGNNRASSQDAMKRRRRPRPLVVQKKRRRLLPFVPTEDPDRRLKQMASLATALTALDIEFSNKLTYFPGMAPRSANRSILENGGMQALTKEDTKTLKRCIAMTKRGQFPPLLVVYDSCQGYTVEADSPIKDMTFIAEYTGDVDYIKKRESDDCDSMMTLIIAAKAADSLVICADKRGNIARFISGINNHTQEGRKKQNCKCVRYDVNGESRVLLVATRDISKGERLYYDYNGYVHEYPTHHFV*