Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446720 | sp|Q9FJK3|AGL80_ARATH | 53.165 | 158 | 73 | 1 | 11 | 168 | 3 | 159 | 3.46e-43 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446720 | G7JM29 | 82.645 | 242 | 27 | 1 | 11 | 252 | 3 | 229 | 2.37e-132 | 382 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1446720 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446720 | MtrunA17_Chr4g0014031 | 82.645 | 242 | 27 | 1 | 11 | 252 | 3 | 229 | 4.56e-136 | 382 |
| Msa1446720 | MtrunA17_Chr4g0014131 | 80.579 | 242 | 34 | 1 | 11 | 252 | 3 | 231 | 4.26e-132 | 372 |
| Msa1446720 | MtrunA17_Chr8g0351751 | 61.355 | 251 | 82 | 5 | 11 | 252 | 3 | 247 | 9.73e-98 | 286 |
| Msa1446720 | MtrunA17_Chr4g0014321 | 57.959 | 245 | 89 | 4 | 8 | 252 | 1 | 231 | 6.34e-94 | 275 |
| Msa1446720 | MtrunA17_Chr4g0013041 | 55.702 | 228 | 69 | 4 | 13 | 238 | 5 | 202 | 3.22e-81 | 242 |
| Msa1446720 | MtrunA17_Chr4g0014121 | 80.625 | 160 | 30 | 1 | 5 | 164 | 26 | 184 | 7.47e-81 | 241 |
| Msa1446720 | MtrunA17_Chr3g0110131 | 48.548 | 241 | 117 | 4 | 11 | 249 | 3 | 238 | 4.94e-62 | 194 |
| Msa1446720 | MtrunA17_Chr3g0107381 | 54.248 | 153 | 69 | 1 | 11 | 163 | 3 | 154 | 6.68e-57 | 181 |
| Msa1446720 | MtrunA17_Chr2g0296831 | 72.500 | 120 | 33 | 0 | 11 | 130 | 3 | 122 | 7.25e-49 | 157 |
| Msa1446720 | MtrunA17_Chr3g0107331 | 44.099 | 161 | 89 | 1 | 11 | 171 | 2 | 161 | 1.37e-42 | 142 |
| Msa1446720 | MtrunA17_Chr3g0107351 | 42.767 | 159 | 90 | 1 | 11 | 169 | 2 | 159 | 6.56e-41 | 138 |
| Msa1446720 | MtrunA17_Chr5g0432691 | 44.667 | 150 | 82 | 1 | 13 | 162 | 5 | 153 | 1.33e-40 | 137 |
| Msa1446720 | MtrunA17_Chr3g0107361 | 40.881 | 159 | 93 | 1 | 11 | 169 | 2 | 159 | 1.32e-38 | 132 |
| Msa1446720 | MtrunA17_Chr3g0107341 | 41.509 | 159 | 92 | 1 | 11 | 169 | 2 | 159 | 2.97e-38 | 131 |
| Msa1446720 | MtrunA17_Chr3g0107461 | 40.260 | 154 | 92 | 0 | 11 | 164 | 3 | 156 | 4.87e-38 | 130 |
| Msa1446720 | MtrunA17_Chr5g0420351 | 44.156 | 154 | 84 | 2 | 11 | 164 | 3 | 154 | 3.26e-37 | 128 |
| Msa1446720 | MtrunA17_Chr2g0283941 | 40.789 | 152 | 90 | 0 | 13 | 164 | 5 | 156 | 9.72e-37 | 130 |
| Msa1446720 | MtrunA17_Chr1g0197461 | 38.961 | 154 | 92 | 2 | 11 | 164 | 2 | 153 | 6.34e-33 | 117 |
| Msa1446720 | MtrunA17_Chr1g0188681 | 40.260 | 154 | 90 | 2 | 11 | 164 | 3 | 154 | 7.03e-33 | 117 |
| Msa1446720 | MtrunA17_Chr1g0197321 | 38.994 | 159 | 95 | 2 | 8 | 166 | 1 | 157 | 2.38e-32 | 115 |
| Msa1446720 | MtrunA17_Chr1g0197261 | 39.103 | 156 | 93 | 2 | 11 | 166 | 3 | 156 | 7.53e-32 | 114 |
| Msa1446720 | MtrunA17_Chr3g0105791 | 39.416 | 137 | 83 | 0 | 37 | 173 | 1 | 137 | 3.08e-31 | 112 |
| Msa1446720 | MtrunA17_Chr1g0188661 | 42.763 | 152 | 85 | 2 | 11 | 162 | 3 | 152 | 1.99e-30 | 111 |
| Msa1446720 | MtrunA17_Chr7g0218151 | 42.208 | 154 | 87 | 2 | 11 | 164 | 3 | 154 | 2.03e-30 | 111 |
| Msa1446720 | MtrunA17_Chr1g0193311 | 42.857 | 154 | 86 | 2 | 11 | 164 | 3 | 154 | 2.68e-30 | 110 |
| Msa1446720 | MtrunA17_Chr4g0031421 | 39.416 | 137 | 83 | 0 | 37 | 173 | 1 | 137 | 4.03e-30 | 109 |
| Msa1446720 | MtrunA17_Chr4g0012761 | 40.909 | 154 | 89 | 2 | 11 | 164 | 3 | 154 | 9.07e-29 | 107 |
| Msa1446720 | MtrunA17_Chr1g0188651 | 42.208 | 154 | 85 | 2 | 11 | 164 | 3 | 152 | 2.41e-27 | 103 |
| Msa1446720 | MtrunA17_Chr3g0106421 | 39.844 | 128 | 77 | 0 | 37 | 164 | 1 | 128 | 1.03e-26 | 103 |
| Msa1446720 | MtrunA17_Chr4g0008701 | 38.462 | 156 | 80 | 2 | 10 | 165 | 5 | 144 | 4.28e-25 | 103 |
| Msa1446720 | MtrunA17_Chr7g0267601 | 37.821 | 156 | 81 | 2 | 10 | 165 | 5 | 144 | 5.51e-25 | 102 |
| Msa1446720 | MtrunA17_Chr2g0296851 | 59.794 | 97 | 38 | 1 | 82 | 177 | 1 | 97 | 9.69e-25 | 94.4 |
| Msa1446720 | MtrunA17_Chr3g0128721 | 29.016 | 193 | 126 | 2 | 10 | 202 | 5 | 186 | 1.74e-24 | 101 |
| Msa1446720 | MtrunA17_Chr2g0296861 | 34.437 | 151 | 98 | 1 | 14 | 164 | 6 | 155 | 6.33e-22 | 89.0 |
| Msa1446720 | MtrunA17_Chr3g0106501 | 30.769 | 130 | 90 | 0 | 37 | 166 | 1 | 130 | 3.58e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446720 | AT5G48670.1 | 53.165 | 158 | 73 | 1 | 11 | 168 | 3 | 159 | 3.52e-44 | 151 |
| Msa1446720 | AT1G65300.1 | 40.217 | 184 | 96 | 3 | 11 | 194 | 2 | 171 | 9.08e-40 | 139 |
| Msa1446720 | AT5G26630.1 | 48.125 | 160 | 82 | 1 | 11 | 170 | 3 | 161 | 9.21e-39 | 134 |
| Msa1446720 | AT1G65330.1 | 40.541 | 185 | 96 | 2 | 11 | 195 | 2 | 172 | 1.05e-38 | 136 |
| Msa1446720 | AT5G26650.1 | 40.244 | 164 | 97 | 1 | 13 | 176 | 3 | 165 | 2.06e-35 | 130 |
| Msa1446720 | AT5G27960.1 | 39.634 | 164 | 98 | 1 | 13 | 176 | 3 | 165 | 1.22e-34 | 127 |
| Msa1446720 | AT1G31630.1 | 34.615 | 182 | 104 | 3 | 11 | 192 | 2 | 168 | 5.51e-33 | 122 |
| Msa1446720 | AT1G31640.1 | 38.411 | 151 | 91 | 2 | 11 | 161 | 2 | 150 | 4.49e-30 | 117 |
| Msa1446720 | AT5G27810.1 | 53.763 | 93 | 43 | 0 | 37 | 129 | 1 | 93 | 6.59e-29 | 106 |
| Msa1446720 | AT3G05860.2 | 38.514 | 148 | 90 | 1 | 11 | 158 | 3 | 149 | 2.48e-28 | 107 |
| Msa1446720 | AT3G05860.3 | 38.514 | 148 | 90 | 1 | 11 | 158 | 3 | 149 | 9.48e-28 | 107 |
| Msa1446720 | AT3G05860.1 | 38.514 | 148 | 90 | 1 | 11 | 158 | 3 | 149 | 9.72e-28 | 107 |
| Msa1446720 | AT2G28700.1 | 35.758 | 165 | 101 | 2 | 11 | 173 | 3 | 164 | 3.71e-26 | 104 |
| Msa1446720 | AT5G26580.1 | 35.897 | 156 | 84 | 3 | 8 | 163 | 1 | 140 | 1.90e-24 | 100 |
| Msa1446720 | AT1G22590.2 | 31.210 | 157 | 103 | 2 | 8 | 164 | 1 | 152 | 4.93e-23 | 92.4 |
| Msa1446720 | AT5G06500.1 | 34.868 | 152 | 97 | 2 | 11 | 162 | 3 | 152 | 4.55e-19 | 84.0 |
| Msa1446720 | AT2G40210.1 | 39.098 | 133 | 79 | 2 | 11 | 142 | 3 | 134 | 2.79e-17 | 80.5 |
| Msa1446720 | AT5G58890.1 | 37.795 | 127 | 68 | 5 | 14 | 131 | 6 | 130 | 2.83e-14 | 71.2 |
Find 66 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAACAAAGAAAAGAAAAT+AGG | 0.231520 | tig0031466:-4544 | Msa1446720:CDS |
| GAGTGAAGAAATGGCAATTA+TGG | 0.233693 | tig0031466:-4282 | Msa1446720:CDS |
| CCATTTGGTGAGGTCAATTC+TGG | 0.235784 | tig0031466:-4161 | Msa1446720:CDS |
| TCAATTTCTCTTCAGCCTTC+AGG | 0.259829 | tig0031466:+4567 | Msa1446720:intergenic |
| GTGAGGTCAATTCTGGAGTT+TGG | 0.330469 | tig0031466:-4154 | Msa1446720:CDS |
| AACGAAGGGTCTATTGAAAA+AGG | 0.335070 | tig0031466:-4777 | Msa1446720:CDS |
| ATGAGCCTCAACCTGAGATT+TGG | 0.345571 | tig0031466:-4697 | Msa1446720:CDS |
| ATAATGTCATCATCATTAAT+AGG | 0.375800 | tig0031466:+4239 | Msa1446720:intergenic |
| GAAGCCTTTGCCATAGTGTA+TGG | 0.388094 | tig0031466:-4725 | Msa1446720:CDS |
| TCGCCATTTCGAGTTGGACT+TGG | 0.402057 | tig0031466:+4339 | Msa1446720:intergenic |
| TATGCAAAGTCAATTATTGA+TGG | 0.408286 | tig0031466:-4219 | Msa1446720:CDS |
| ATCTCAGGTTGAGGCTCATA+AGG | 0.418788 | tig0031466:+4701 | Msa1446720:intergenic |
| GAAACAAAGAAAAGAAAATA+GGG | 0.419680 | tig0031466:-4543 | Msa1446720:CDS |
| AGTGAAGAAATGGCAATTAT+GGG | 0.424565 | tig0031466:-4281 | Msa1446720:CDS |
| GAAGGATGTTAGTAGACGTT+TGG | 0.425640 | tig0031466:-4408 | Msa1446720:CDS |
| GGTCTGATTTACTACCTTGA+AGG | 0.436579 | tig0031466:-4133 | None:intergenic |
| AAACCAAGTCCAACTCGAAA+TGG | 0.452175 | tig0031466:-4342 | Msa1446720:CDS |
| AGCATCTAGGAGTGAAGAAA+TGG | 0.457574 | tig0031466:-4291 | Msa1446720:CDS |
| AACCTTACTTCTTCTACCCA+TGG | 0.464315 | tig0031466:+4853 | Msa1446720:intergenic |
| CTCATAAGGTCCATACACTA+TGG | 0.467279 | tig0031466:+4715 | Msa1446720:intergenic |
| TTATGGGTCATGGCCATGTT+GGG | 0.476409 | tig0031466:-4265 | Msa1446720:CDS |
| TCAATTATTGATGGACTCAA+TGG | 0.482426 | tig0031466:-4210 | Msa1446720:CDS |
| CTTCTACCCATGGTTGTGAC+AGG | 0.484586 | tig0031466:+4863 | Msa1446720:intergenic |
| GTTGATTGACCACAATTTGA+AGG | 0.487410 | tig0031466:-4426 | Msa1446720:CDS |
| TCTGGTAAAGGCCAAATCTC+AGG | 0.493519 | tig0031466:+4686 | Msa1446720:intergenic |
| AACCATGGGTAGAAGAAGTA+AGG | 0.501192 | tig0031466:-4855 | Msa1446720:CDS |
| CCAGAATTGACCTCACCAAA+TGG | 0.504570 | tig0031466:+4161 | Msa1446720:intergenic |
| TTAGTAGACGTTTGGAAGCA+TGG | 0.506023 | tig0031466:-4400 | Msa1446720:CDS |
| TGGATATGAGTTATCTTGCT+TGG | 0.509186 | tig0031466:-4448 | Msa1446720:CDS |
| GATTGGACACCCTCTGGTAA+AGG | 0.514238 | tig0031466:+4674 | Msa1446720:intergenic |
| TGCAACATCATTGACAATGA+AGG | 0.517037 | tig0031466:+4823 | Msa1446720:intergenic |
| ATGAGTCAATGTCTTAATGA+AGG | 0.517500 | tig0031466:-4500 | Msa1446720:CDS |
| GTGCAAGACACAGTGCCATT+TGG | 0.519717 | tig0031466:-4176 | Msa1446720:CDS |
| CAATGATCAAAATCAAATCA+TGG | 0.521352 | tig0031466:-4372 | Msa1446720:CDS |
| AGCACAGATTGGACACCCTC+TGG | 0.522070 | tig0031466:+4668 | Msa1446720:intergenic |
| CACCACTTCTAGCAGCATCT+AGG | 0.525777 | tig0031466:-4304 | Msa1446720:CDS |
| TTTGTGTCAAGAAAGTCTCT+TGG | 0.525855 | tig0031466:+4594 | Msa1446720:intergenic |
| AGAGACTTTCTTGACACAAA+GGG | 0.533444 | tig0031466:-4591 | Msa1446720:CDS |
| TACTAACATCCTTCAAATTG+TGG | 0.547844 | tig0031466:+4417 | Msa1446720:intergenic |
| GAAATGGCAATTATGGGTCA+TGG | 0.549964 | tig0031466:-4275 | Msa1446720:CDS |
| TAGTAGACGTTTGGAAGCAT+GGG | 0.553921 | tig0031466:-4399 | Msa1446720:CDS |
| CTCTACTCCTGTCACAACCA+TGG | 0.554364 | tig0031466:-4870 | Msa1446720:CDS |
| GAGATTTGGCCTTTACCAGA+GGG | 0.563951 | tig0031466:-4683 | Msa1446720:CDS |
| ATTATGGGTCATGGCCATGT+TGG | 0.565284 | tig0031466:-4266 | Msa1446720:CDS |
| CTTGACACAAAGGGTCCTGA+AGG | 0.570745 | tig0031466:-4582 | Msa1446720:CDS |
| CTCCTAGATGCTGCTAGAAG+TGG | 0.571630 | tig0031466:+4302 | Msa1446720:intergenic |
| TTGTTGTCGCCATTTCGAGT+TGG | 0.584691 | tig0031466:+4333 | Msa1446720:intergenic |
| CATGGTTGTGACAGGAGTAG+AGG | 0.588779 | tig0031466:+4871 | Msa1446720:intergenic |
| CATTAATAGGTATCCCAACA+TGG | 0.589301 | tig0031466:+4252 | Msa1446720:intergenic |
| TCATTGTCAATGATGTTGCA+AGG | 0.595963 | tig0031466:-4820 | Msa1446720:CDS |
| AAAGGCCAAATCTCAGGTTG+AGG | 0.605277 | tig0031466:+4692 | Msa1446720:intergenic |
| CTAGATGCTGCTAGAAGTGG+TGG | 0.605478 | tig0031466:+4305 | Msa1446720:intergenic |
| TTGATGGACTCAATGGTGGC+TGG | 0.607204 | tig0031466:-4203 | Msa1446720:CDS |
| TCTACTCCTGTCACAACCAT+GGG | 0.608970 | tig0031466:-4869 | Msa1446720:CDS |
| AAAGGCTTCAATGCCACAGA+GGG | 0.618725 | tig0031466:+4739 | Msa1446720:intergenic |
| ATCATACAAGAAAAGAACGA+AGG | 0.618898 | tig0031466:-4792 | Msa1446720:CDS |
| TCATACAAGAAAAGAACGAA+GGG | 0.620354 | tig0031466:-4791 | Msa1446720:CDS |
| AAGAGACTTTCTTGACACAA+AGG | 0.620991 | tig0031466:-4592 | Msa1446720:CDS |
| TGAGATTTGGCCTTTACCAG+AGG | 0.625137 | tig0031466:-4684 | Msa1446720:CDS |
| GATGCTGCTAGAAGTGGTGG+TGG | 0.633563 | tig0031466:+4308 | Msa1446720:intergenic |
| AGGTCCATACACTATGGCAA+AGG | 0.638234 | tig0031466:+4721 | Msa1446720:intergenic |
| AGACACAGTGCCATTTGGTG+AGG | 0.656629 | tig0031466:-4171 | Msa1446720:CDS |
| ATTATTGATGGACTCAATGG+TGG | 0.666274 | tig0031466:-4207 | Msa1446720:CDS |
| GCATGACAATATGTCAACAA+TGG | 0.671130 | tig0031466:-4468 | Msa1446720:CDS |
| GCTGAACTTAGCACCCTCTG+TGG | 0.677042 | tig0031466:-4752 | Msa1446720:CDS |
| CAAAGGCTTCAATGCCACAG+AGG | 0.706392 | tig0031466:+4738 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAACAAAGAAAAGAAAAT+AGG | - | tig0031466:4464-4483 | Msa1446720:CDS | 20.0% |
| !! | GAAACAAAGAAAAGAAAATA+GGG | - | tig0031466:4465-4484 | Msa1446720:CDS | 20.0% |
| !! | ATAATGTCATCATCATTAAT+AGG | + | tig0031466:4772-4791 | Msa1446720:intergenic | 20.0% |
| !! | AGAAACAAAGAAAAGAAAAT+AGG | - | tig0031466:4464-4483 | Msa1446720:CDS | 20.0% |
| !! | GAAACAAAGAAAAGAAAATA+GGG | - | tig0031466:4465-4484 | Msa1446720:CDS | 20.0% |
| !! | ATAATGTCATCATCATTAAT+AGG | + | tig0031466:4772-4791 | Msa1446720:intergenic | 20.0% |
| ! | CAATGATCAAAATCAAATCA+TGG | - | tig0031466:4636-4655 | Msa1446720:CDS | 25.0% |
| ! | TATGCAAAGTCAATTATTGA+TGG | - | tig0031466:4789-4808 | Msa1446720:CDS | 25.0% |
| ! | CAATGATCAAAATCAAATCA+TGG | - | tig0031466:4636-4655 | Msa1446720:CDS | 25.0% |
| ! | TATGCAAAGTCAATTATTGA+TGG | - | tig0031466:4789-4808 | Msa1446720:CDS | 25.0% |
| ATCATACAAGAAAAGAACGA+AGG | - | tig0031466:4216-4235 | Msa1446720:CDS | 30.0% | |
| TCATACAAGAAAAGAACGAA+GGG | - | tig0031466:4217-4236 | Msa1446720:CDS | 30.0% | |
| ATGAGTCAATGTCTTAATGA+AGG | - | tig0031466:4508-4527 | Msa1446720:CDS | 30.0% | |
| TACTAACATCCTTCAAATTG+TGG | + | tig0031466:4594-4613 | Msa1446720:intergenic | 30.0% | |
| AGTGAAGAAATGGCAATTAT+GGG | - | tig0031466:4727-4746 | Msa1446720:CDS | 30.0% | |
| !! | TCAATTATTGATGGACTCAA+TGG | - | tig0031466:4798-4817 | Msa1446720:CDS | 30.0% |
| ATCATACAAGAAAAGAACGA+AGG | - | tig0031466:4216-4235 | Msa1446720:CDS | 30.0% | |
| TCATACAAGAAAAGAACGAA+GGG | - | tig0031466:4217-4236 | Msa1446720:CDS | 30.0% | |
| ATGAGTCAATGTCTTAATGA+AGG | - | tig0031466:4508-4527 | Msa1446720:CDS | 30.0% | |
| TACTAACATCCTTCAAATTG+TGG | + | tig0031466:4594-4613 | Msa1446720:intergenic | 30.0% | |
| AGTGAAGAAATGGCAATTAT+GGG | - | tig0031466:4727-4746 | Msa1446720:CDS | 30.0% | |
| !! | TCAATTATTGATGGACTCAA+TGG | - | tig0031466:4798-4817 | Msa1446720:CDS | 30.0% |
| TGCAACATCATTGACAATGA+AGG | + | tig0031466:4188-4207 | Msa1446720:intergenic | 35.0% | |
| TCATTGTCAATGATGTTGCA+AGG | - | tig0031466:4188-4207 | Msa1446720:CDS | 35.0% | |
| AACGAAGGGTCTATTGAAAA+AGG | - | tig0031466:4231-4250 | Msa1446720:CDS | 35.0% | |
| !! | TGAATTTTGAGAGCACAGAT+TGG | + | tig0031466:4354-4373 | Msa1446720:intergenic | 35.0% |
| TTTGTGTCAAGAAAGTCTCT+TGG | + | tig0031466:4417-4436 | Msa1446720:intergenic | 35.0% | |
| AAGAGACTTTCTTGACACAA+AGG | - | tig0031466:4416-4435 | Msa1446720:CDS | 35.0% | |
| AGAGACTTTCTTGACACAAA+GGG | - | tig0031466:4417-4436 | Msa1446720:CDS | 35.0% | |
| GCATGACAATATGTCAACAA+TGG | - | tig0031466:4540-4559 | Msa1446720:CDS | 35.0% | |
| TGGATATGAGTTATCTTGCT+TGG | - | tig0031466:4560-4579 | Msa1446720:CDS | 35.0% | |
| GTTGATTGACCACAATTTGA+AGG | - | tig0031466:4582-4601 | Msa1446720:CDS | 35.0% | |
| GAGTGAAGAAATGGCAATTA+TGG | - | tig0031466:4726-4745 | Msa1446720:CDS | 35.0% | |
| CATTAATAGGTATCCCAACA+TGG | + | tig0031466:4759-4778 | Msa1446720:intergenic | 35.0% | |
| !! | ATTATTGATGGACTCAATGG+TGG | - | tig0031466:4801-4820 | Msa1446720:CDS | 35.0% |
| TGCAACATCATTGACAATGA+AGG | + | tig0031466:4188-4207 | Msa1446720:intergenic | 35.0% | |
| TCATTGTCAATGATGTTGCA+AGG | - | tig0031466:4188-4207 | Msa1446720:CDS | 35.0% | |
| AACGAAGGGTCTATTGAAAA+AGG | - | tig0031466:4231-4250 | Msa1446720:CDS | 35.0% | |
| !! | TGAATTTTGAGAGCACAGAT+TGG | + | tig0031466:4354-4373 | Msa1446720:intergenic | 35.0% |
| TTTGTGTCAAGAAAGTCTCT+TGG | + | tig0031466:4417-4436 | Msa1446720:intergenic | 35.0% | |
| AAGAGACTTTCTTGACACAA+AGG | - | tig0031466:4416-4435 | Msa1446720:CDS | 35.0% | |
| AGAGACTTTCTTGACACAAA+GGG | - | tig0031466:4417-4436 | Msa1446720:CDS | 35.0% | |
| GCATGACAATATGTCAACAA+TGG | - | tig0031466:4540-4559 | Msa1446720:CDS | 35.0% | |
| TGGATATGAGTTATCTTGCT+TGG | - | tig0031466:4560-4579 | Msa1446720:CDS | 35.0% | |
| GTTGATTGACCACAATTTGA+AGG | - | tig0031466:4582-4601 | Msa1446720:CDS | 35.0% | |
| GAGTGAAGAAATGGCAATTA+TGG | - | tig0031466:4726-4745 | Msa1446720:CDS | 35.0% | |
| CATTAATAGGTATCCCAACA+TGG | + | tig0031466:4759-4778 | Msa1446720:intergenic | 35.0% | |
| !! | ATTATTGATGGACTCAATGG+TGG | - | tig0031466:4801-4820 | Msa1446720:CDS | 35.0% |
| AACCATGGGTAGAAGAAGTA+AGG | - | tig0031466:4153-4172 | Msa1446720:CDS | 40.0% | |
| AACCTTACTTCTTCTACCCA+TGG | + | tig0031466:4158-4177 | Msa1446720:intergenic | 40.0% | |
| CTCATAAGGTCCATACACTA+TGG | + | tig0031466:4296-4315 | Msa1446720:intergenic | 40.0% | |
| TCAATTTCTCTTCAGCCTTC+AGG | + | tig0031466:4444-4463 | Msa1446720:intergenic | 40.0% | |
| GAAGGATGTTAGTAGACGTT+TGG | - | tig0031466:4600-4619 | Msa1446720:CDS | 40.0% | |
| TTAGTAGACGTTTGGAAGCA+TGG | - | tig0031466:4608-4627 | Msa1446720:CDS | 40.0% | |
| ! | TAGTAGACGTTTGGAAGCAT+GGG | - | tig0031466:4609-4628 | Msa1446720:CDS | 40.0% |
| AAACCAAGTCCAACTCGAAA+TGG | - | tig0031466:4666-4685 | Msa1446720:CDS | 40.0% | |
| AGCATCTAGGAGTGAAGAAA+TGG | - | tig0031466:4717-4736 | Msa1446720:CDS | 40.0% | |
| GAAATGGCAATTATGGGTCA+TGG | - | tig0031466:4733-4752 | Msa1446720:CDS | 40.0% | |
| AACCATGGGTAGAAGAAGTA+AGG | - | tig0031466:4153-4172 | Msa1446720:CDS | 40.0% | |
| AACCTTACTTCTTCTACCCA+TGG | + | tig0031466:4158-4177 | Msa1446720:intergenic | 40.0% | |
| CTCATAAGGTCCATACACTA+TGG | + | tig0031466:4296-4315 | Msa1446720:intergenic | 40.0% | |
| TCAATTTCTCTTCAGCCTTC+AGG | + | tig0031466:4444-4463 | Msa1446720:intergenic | 40.0% | |
| GAAGGATGTTAGTAGACGTT+TGG | - | tig0031466:4600-4619 | Msa1446720:CDS | 40.0% | |
| TTAGTAGACGTTTGGAAGCA+TGG | - | tig0031466:4608-4627 | Msa1446720:CDS | 40.0% | |
| ! | TAGTAGACGTTTGGAAGCAT+GGG | - | tig0031466:4609-4628 | Msa1446720:CDS | 40.0% |
| AAACCAAGTCCAACTCGAAA+TGG | - | tig0031466:4666-4685 | Msa1446720:CDS | 40.0% | |
| AGCATCTAGGAGTGAAGAAA+TGG | - | tig0031466:4717-4736 | Msa1446720:CDS | 40.0% | |
| GAAATGGCAATTATGGGTCA+TGG | - | tig0031466:4733-4752 | Msa1446720:CDS | 40.0% | |
| TCTACTCCTGTCACAACCAT+GGG | - | tig0031466:4139-4158 | Msa1446720:CDS | 45.0% | |
| AAAGGCTTCAATGCCACAGA+GGG | + | tig0031466:4272-4291 | Msa1446720:intergenic | 45.0% | |
| GAAGCCTTTGCCATAGTGTA+TGG | - | tig0031466:4283-4302 | Msa1446720:CDS | 45.0% | |
| AGGTCCATACACTATGGCAA+AGG | + | tig0031466:4290-4309 | Msa1446720:intergenic | 45.0% | |
| !! | ATCTCAGGTTGAGGCTCATA+AGG | + | tig0031466:4310-4329 | Msa1446720:intergenic | 45.0% |
| ATGAGCCTCAACCTGAGATT+TGG | - | tig0031466:4311-4330 | Msa1446720:CDS | 45.0% | |
| ! | AAAGGCCAAATCTCAGGTTG+AGG | + | tig0031466:4319-4338 | Msa1446720:intergenic | 45.0% |
| TCTGGTAAAGGCCAAATCTC+AGG | + | tig0031466:4325-4344 | Msa1446720:intergenic | 45.0% | |
| ! | TGAGATTTGGCCTTTACCAG+AGG | - | tig0031466:4324-4343 | Msa1446720:CDS | 45.0% |
| ! | GAGATTTGGCCTTTACCAGA+GGG | - | tig0031466:4325-4344 | Msa1446720:CDS | 45.0% |
| ! | TTGTTGTCGCCATTTCGAGT+TGG | + | tig0031466:4678-4697 | Msa1446720:intergenic | 45.0% |
| ATTATGGGTCATGGCCATGT+TGG | - | tig0031466:4742-4761 | Msa1446720:CDS | 45.0% | |
| TTATGGGTCATGGCCATGTT+GGG | - | tig0031466:4743-4762 | Msa1446720:CDS | 45.0% | |
| CCAGAATTGACCTCACCAAA+TGG | + | tig0031466:4850-4869 | Msa1446720:intergenic | 45.0% | |
| ! | CCATTTGGTGAGGTCAATTC+TGG | - | tig0031466:4847-4866 | Msa1446720:CDS | 45.0% |
| !! | GTGAGGTCAATTCTGGAGTT+TGG | - | tig0031466:4854-4873 | Msa1446720:CDS | 45.0% |
| TCTACTCCTGTCACAACCAT+GGG | - | tig0031466:4139-4158 | Msa1446720:CDS | 45.0% | |
| AAAGGCTTCAATGCCACAGA+GGG | + | tig0031466:4272-4291 | Msa1446720:intergenic | 45.0% | |
| GAAGCCTTTGCCATAGTGTA+TGG | - | tig0031466:4283-4302 | Msa1446720:CDS | 45.0% | |
| AGGTCCATACACTATGGCAA+AGG | + | tig0031466:4290-4309 | Msa1446720:intergenic | 45.0% | |
| !! | ATCTCAGGTTGAGGCTCATA+AGG | + | tig0031466:4310-4329 | Msa1446720:intergenic | 45.0% |
| ATGAGCCTCAACCTGAGATT+TGG | - | tig0031466:4311-4330 | Msa1446720:CDS | 45.0% | |
| ! | AAAGGCCAAATCTCAGGTTG+AGG | + | tig0031466:4319-4338 | Msa1446720:intergenic | 45.0% |
| TCTGGTAAAGGCCAAATCTC+AGG | + | tig0031466:4325-4344 | Msa1446720:intergenic | 45.0% | |
| ! | TGAGATTTGGCCTTTACCAG+AGG | - | tig0031466:4324-4343 | Msa1446720:CDS | 45.0% |
| ! | GAGATTTGGCCTTTACCAGA+GGG | - | tig0031466:4325-4344 | Msa1446720:CDS | 45.0% |
| ! | TTGTTGTCGCCATTTCGAGT+TGG | + | tig0031466:4678-4697 | Msa1446720:intergenic | 45.0% |
| ATTATGGGTCATGGCCATGT+TGG | - | tig0031466:4742-4761 | Msa1446720:CDS | 45.0% | |
| TTATGGGTCATGGCCATGTT+GGG | - | tig0031466:4743-4762 | Msa1446720:CDS | 45.0% | |
| CCAGAATTGACCTCACCAAA+TGG | + | tig0031466:4850-4869 | Msa1446720:intergenic | 45.0% | |
| ! | CCATTTGGTGAGGTCAATTC+TGG | - | tig0031466:4847-4866 | Msa1446720:CDS | 45.0% |
| !! | GTGAGGTCAATTCTGGAGTT+TGG | - | tig0031466:4854-4873 | Msa1446720:CDS | 45.0% |
| CATGGTTGTGACAGGAGTAG+AGG | + | tig0031466:4140-4159 | Msa1275630:intergenic | 50.0% | |
| CTCTACTCCTGTCACAACCA+TGG | - | tig0031466:4138-4157 | Msa1446720:CDS | 50.0% | |
| CTTCTACCCATGGTTGTGAC+AGG | + | tig0031466:4148-4167 | Msa1446720:intergenic | 50.0% | |
| CAAAGGCTTCAATGCCACAG+AGG | + | tig0031466:4273-4292 | Msa1446720:intergenic | 50.0% | |
| GATTGGACACCCTCTGGTAA+AGG | + | tig0031466:4337-4356 | Msa1446720:intergenic | 50.0% | |
| CTTGACACAAAGGGTCCTGA+AGG | - | tig0031466:4426-4445 | Msa1446720:CDS | 50.0% | |
| !! | TCGCCATTTCGAGTTGGACT+TGG | + | tig0031466:4672-4691 | Msa1446720:intergenic | 50.0% |
| CTAGATGCTGCTAGAAGTGG+TGG | + | tig0031466:4706-4725 | Msa1446720:intergenic | 50.0% | |
| CACCACTTCTAGCAGCATCT+AGG | - | tig0031466:4704-4723 | Msa1446720:CDS | 50.0% | |
| CTCCTAGATGCTGCTAGAAG+TGG | + | tig0031466:4709-4728 | Msa1446720:intergenic | 50.0% | |
| !! | TTGATGGACTCAATGGTGGC+TGG | - | tig0031466:4805-4824 | Msa1446720:CDS | 50.0% |
| ! | GTGCAAGACACAGTGCCATT+TGG | - | tig0031466:4832-4851 | Msa1446720:CDS | 50.0% |
| !! | AGACACAGTGCCATTTGGTG+AGG | - | tig0031466:4837-4856 | Msa1446720:CDS | 50.0% |
| CATGGTTGTGACAGGAGTAG+AGG | + | tig0031466:4140-4159 | Msa1446720:intergenic | 50.0% | |
| CTCTACTCCTGTCACAACCA+TGG | - | tig0031466:4138-4157 | Msa1446720:CDS | 50.0% | |
| CTTCTACCCATGGTTGTGAC+AGG | + | tig0031466:4148-4167 | Msa1446720:intergenic | 50.0% | |
| CAAAGGCTTCAATGCCACAG+AGG | + | tig0031466:4273-4292 | Msa1446720:intergenic | 50.0% | |
| GATTGGACACCCTCTGGTAA+AGG | + | tig0031466:4337-4356 | Msa1446720:intergenic | 50.0% | |
| CTTGACACAAAGGGTCCTGA+AGG | - | tig0031466:4426-4445 | Msa1446720:CDS | 50.0% | |
| !! | TCGCCATTTCGAGTTGGACT+TGG | + | tig0031466:4672-4691 | Msa1446720:intergenic | 50.0% |
| CTAGATGCTGCTAGAAGTGG+TGG | + | tig0031466:4706-4725 | Msa1446720:intergenic | 50.0% | |
| CACCACTTCTAGCAGCATCT+AGG | - | tig0031466:4704-4723 | Msa1446720:CDS | 50.0% | |
| CTCCTAGATGCTGCTAGAAG+TGG | + | tig0031466:4709-4728 | Msa1446720:intergenic | 50.0% | |
| !! | TTGATGGACTCAATGGTGGC+TGG | - | tig0031466:4805-4824 | Msa1446720:CDS | 50.0% |
| ! | GTGCAAGACACAGTGCCATT+TGG | - | tig0031466:4832-4851 | Msa1446720:CDS | 50.0% |
| !! | AGACACAGTGCCATTTGGTG+AGG | - | tig0031466:4837-4856 | Msa1446720:CDS | 50.0% |
| GCTGAACTTAGCACCCTCTG+TGG | - | tig0031466:4256-4275 | Msa1446720:CDS | 55.0% | |
| AGCACAGATTGGACACCCTC+TGG | + | tig0031466:4343-4362 | Msa1446720:intergenic | 55.0% | |
| GATGCTGCTAGAAGTGGTGG+TGG | + | tig0031466:4703-4722 | Msa1446720:intergenic | 55.0% | |
| GCTGAACTTAGCACCCTCTG+TGG | - | tig0031466:4256-4275 | Msa1446720:CDS | 55.0% | |
| AGCACAGATTGGACACCCTC+TGG | + | tig0031466:4343-4362 | Msa1446720:intergenic | 55.0% | |
| GATGCTGCTAGAAGTGGTGG+TGG | + | tig0031466:4703-4722 | Msa1446720:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031466 | gene | 4136 | 4894 | 4136 | ID=Msa1446720;Name=Msa1446720 |
| tig0031466 | mRNA | 4136 | 4894 | 4136 | ID=Msa1446720-mRNA-1;Parent=Msa1446720;Name=Msa1446720-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|252 |
| tig0031466 | exon | 4136 | 4894 | 4136 | ID=Msa1446720-mRNA-1:exon:15529;Parent=Msa1446720-mRNA-1 |
| tig0031466 | CDS | 4136 | 4894 | 4136 | ID=Msa1446720-mRNA-1:cds;Parent=Msa1446720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
