Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446760 | sp|Q7XBH4|MYB4_ORYSJ | 68.889 | 45 | 14 | 0 | 1 | 45 | 1 | 45 | 2.18e-19 | 82.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446760 | A0A072U5D9 | 57.732 | 97 | 30 | 3 | 1 | 96 | 1 | 87 | 8.68e-26 | 104 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1446760 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446760 | MtrunA17_Chr7g0274581 | 57.732 | 97 | 30 | 3 | 1 | 96 | 1 | 87 | 1.67e-29 | 104 |
| Msa1446760 | MtrunA17_Chr7g0261281 | 73.333 | 45 | 12 | 0 | 1 | 45 | 1 | 45 | 1.13e-21 | 85.9 |
| Msa1446760 | MtrunA17_Chr1g0187761 | 68.889 | 45 | 14 | 0 | 1 | 45 | 1 | 45 | 1.90e-19 | 79.7 |
| Msa1446760 | MtrunA17_Chr4g0042671 | 62.222 | 45 | 17 | 0 | 1 | 45 | 1 | 45 | 1.23e-17 | 76.3 |
| Msa1446760 | MtrunA17_Chr1g0167661 | 62.222 | 45 | 17 | 0 | 1 | 45 | 1 | 45 | 3.05e-17 | 73.9 |
| Msa1446760 | MtrunA17_Chr4g0039971 | 60.000 | 45 | 18 | 0 | 1 | 45 | 2 | 46 | 3.08e-17 | 74.7 |
| Msa1446760 | MtrunA17_Chr1g0167691 | 62.222 | 45 | 17 | 0 | 1 | 45 | 1 | 45 | 3.43e-17 | 73.6 |
| Msa1446760 | MtrunA17_Chr7g0217741 | 57.778 | 45 | 19 | 0 | 1 | 45 | 1 | 45 | 5.74e-17 | 73.6 |
| Msa1446760 | MtrunA17_Chr3g0115821 | 62.222 | 45 | 17 | 0 | 1 | 45 | 1 | 45 | 8.89e-17 | 73.6 |
| Msa1446760 | MtrunA17_Chr6g0453471 | 55.556 | 45 | 20 | 0 | 1 | 45 | 1 | 45 | 5.28e-16 | 71.2 |
| Msa1446760 | MtrunA17_Chr4g0042611 | 55.556 | 45 | 20 | 0 | 1 | 45 | 1 | 45 | 5.49e-16 | 67.0 |
| Msa1446760 | MtrunA17_Chr2g0323411 | 57.778 | 45 | 19 | 0 | 1 | 45 | 1 | 45 | 7.21e-16 | 70.9 |
| Msa1446760 | MtrunA17_Chr2g0281071 | 60.870 | 46 | 17 | 1 | 1 | 45 | 1 | 46 | 7.71e-16 | 70.9 |
| Msa1446760 | MtrunA17_Chr4g0068061 | 57.778 | 45 | 19 | 0 | 1 | 45 | 1 | 45 | 1.81e-15 | 69.7 |
| Msa1446760 | MtrunA17_Chr4g0060721 | 55.556 | 45 | 20 | 0 | 1 | 45 | 2 | 46 | 3.49e-15 | 68.9 |
| Msa1446760 | MtrunA17_Chr3g0092401 | 55.556 | 45 | 20 | 0 | 1 | 45 | 2 | 46 | 3.55e-15 | 68.9 |
| Msa1446760 | MtrunA17_Chr5g0395281 | 60.000 | 45 | 18 | 0 | 1 | 45 | 1 | 45 | 3.69e-15 | 68.6 |
| Msa1446760 | MtrunA17_Chr7g0247141 | 54.348 | 46 | 20 | 1 | 1 | 45 | 1 | 46 | 5.56e-15 | 63.5 |
| Msa1446760 | MtrunA17_Chr7g0254411 | 55.556 | 45 | 20 | 0 | 1 | 45 | 1 | 45 | 7.16e-15 | 68.2 |
| Msa1446760 | MtrunA17_Chr2g0294811 | 55.556 | 45 | 20 | 0 | 1 | 45 | 1 | 45 | 1.21e-14 | 64.3 |
| Msa1446760 | MtrunA17_Chr4g0048511 | 58.696 | 46 | 18 | 1 | 1 | 45 | 1 | 46 | 1.24e-14 | 67.4 |
| Msa1446760 | MtrunA17_Chr7g0217221 | 53.333 | 45 | 21 | 0 | 1 | 45 | 1 | 45 | 1.70e-14 | 66.6 |
| Msa1446760 | MtrunA17_Chr7g0269831 | 53.333 | 45 | 21 | 0 | 1 | 45 | 1 | 45 | 2.39e-14 | 66.6 |
| Msa1446760 | MtrunA17_Chr6g0453211 | 53.333 | 45 | 21 | 0 | 1 | 45 | 1 | 45 | 2.40e-14 | 66.6 |
| Msa1446760 | MtrunA17_Chr1g0203411 | 53.333 | 45 | 21 | 0 | 1 | 45 | 1 | 45 | 5.49e-14 | 65.5 |
| Msa1446760 | MtrunA17_Chr2g0311221 | 35.789 | 95 | 52 | 2 | 2 | 96 | 4 | 89 | 5.51e-14 | 65.5 |
| Msa1446760 | MtrunA17_Chr1g0194951 | 53.333 | 45 | 21 | 0 | 1 | 45 | 1 | 45 | 7.88e-14 | 65.5 |
| Msa1446760 | MtrunA17_Chr7g0275911 | 48.889 | 45 | 23 | 0 | 1 | 45 | 1 | 45 | 7.95e-14 | 64.7 |
| Msa1446760 | MtrunA17_Chr5g0410961 | 53.333 | 45 | 21 | 0 | 1 | 45 | 1 | 45 | 9.38e-14 | 65.1 |
| Msa1446760 | MtrunA17_Chr8g0346561 | 46.667 | 45 | 24 | 0 | 1 | 45 | 1 | 45 | 1.95e-13 | 63.9 |
| Msa1446760 | MtrunA17_Chr3g0110351 | 55.556 | 45 | 20 | 0 | 1 | 45 | 1 | 45 | 2.04e-13 | 63.9 |
| Msa1446760 | MtrunA17_Chr4g0057031 | 55.556 | 45 | 20 | 0 | 1 | 45 | 1 | 45 | 2.69e-13 | 63.5 |
| Msa1446760 | MtrunA17_Chr5g0434571 | 55.556 | 45 | 20 | 0 | 1 | 45 | 37 | 81 | 3.07e-13 | 63.5 |
| Msa1446760 | MtrunA17_Chr8g0349261 | 53.191 | 47 | 20 | 2 | 1 | 45 | 1 | 47 | 3.81e-13 | 63.2 |
| Msa1446760 | MtrunA17_Chr3g0121241 | 51.220 | 41 | 20 | 0 | 5 | 45 | 35 | 75 | 1.30e-12 | 61.6 |
| Msa1446760 | MtrunA17_Chr4g0022911 | 56.522 | 46 | 19 | 1 | 1 | 45 | 1 | 46 | 1.77e-12 | 61.2 |
| Msa1446760 | MtrunA17_Chr8g0385321 | 53.333 | 45 | 21 | 0 | 1 | 45 | 1 | 45 | 3.26e-12 | 60.5 |
| Msa1446760 | MtrunA17_Chr4g0070611 | 48.889 | 45 | 23 | 0 | 1 | 45 | 1 | 45 | 3.98e-12 | 60.5 |
| Msa1446760 | MtrunA17_Chr7g0270891 | 53.333 | 45 | 21 | 0 | 1 | 45 | 1 | 45 | 4.90e-12 | 60.5 |
| Msa1446760 | MtrunA17_Chr5g0395221 | 51.111 | 45 | 22 | 0 | 1 | 45 | 1 | 45 | 6.01e-12 | 56.6 |
| Msa1446760 | MtrunA17_Chr1g0193801 | 53.333 | 45 | 21 | 0 | 1 | 45 | 1 | 45 | 7.33e-12 | 59.7 |
| Msa1446760 | MtrunA17_Chr4g0070641 | 48.889 | 45 | 23 | 0 | 1 | 45 | 1 | 45 | 9.37e-12 | 57.8 |
| Msa1446760 | MtrunA17_Chr4g0037141 | 53.333 | 45 | 21 | 0 | 1 | 45 | 1 | 45 | 9.75e-12 | 59.3 |
| Msa1446760 | MtrunA17_Chr4g0022931 | 56.522 | 46 | 19 | 1 | 1 | 45 | 1 | 46 | 1.07e-11 | 58.9 |
| Msa1446760 | MtrunA17_Chr4g0022901 | 56.522 | 46 | 19 | 1 | 1 | 45 | 1 | 46 | 1.18e-11 | 58.9 |
| Msa1446760 | MtrunA17_Chr2g0323351 | 51.111 | 45 | 22 | 0 | 1 | 45 | 1 | 45 | 1.72e-11 | 58.2 |
| Msa1446760 | MtrunA17_Chr8g0342511 | 48.889 | 45 | 23 | 0 | 1 | 45 | 1 | 45 | 3.23e-11 | 55.1 |
| Msa1446760 | MtrunA17_Chr3g0131121 | 51.111 | 45 | 22 | 0 | 1 | 45 | 1 | 45 | 3.91e-11 | 57.4 |
| Msa1446760 | MtrunA17_Chr5g0435101 | 47.826 | 46 | 24 | 0 | 3 | 48 | 2 | 47 | 5.76e-11 | 56.6 |
| Msa1446760 | MtrunA17_Chr8g0342531 | 48.889 | 45 | 23 | 0 | 1 | 45 | 1 | 45 | 5.94e-11 | 55.8 |
| Msa1446760 | MtrunA17_Chr8g0342541 | 48.889 | 45 | 23 | 0 | 1 | 45 | 1 | 45 | 6.96e-11 | 57.0 |
| Msa1446760 | MtrunA17_Chr1g0151941 | 50.000 | 46 | 22 | 1 | 1 | 45 | 1 | 46 | 8.64e-11 | 56.2 |
| Msa1446760 | MtrunA17_Chr4g0072751 | 52.174 | 46 | 21 | 1 | 1 | 45 | 1 | 46 | 8.66e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446760 | AT2G31180.1 | 66.667 | 45 | 15 | 0 | 1 | 45 | 1 | 45 | 4.36e-19 | 79.0 |
| Msa1446760 | AT3G23250.1 | 66.667 | 45 | 15 | 0 | 1 | 45 | 1 | 45 | 1.03e-18 | 78.6 |
| Msa1446760 | AT3G02940.2 | 64.444 | 45 | 16 | 0 | 1 | 45 | 1 | 45 | 4.34e-18 | 77.0 |
| Msa1446760 | AT3G02940.1 | 64.444 | 45 | 16 | 0 | 1 | 45 | 1 | 45 | 5.29e-18 | 77.0 |
| Msa1446760 | AT3G02940.3 | 64.444 | 45 | 16 | 0 | 1 | 45 | 1 | 45 | 5.29e-18 | 77.0 |
| Msa1446760 | AT1G06180.1 | 66.667 | 45 | 15 | 0 | 1 | 45 | 1 | 45 | 6.53e-18 | 75.9 |
| Msa1446760 | AT4G21440.1 | 62.222 | 45 | 17 | 0 | 1 | 45 | 1 | 45 | 6.84e-18 | 77.0 |
| Msa1446760 | AT5G16770.4 | 64.444 | 45 | 16 | 0 | 1 | 45 | 1 | 45 | 1.08e-17 | 76.3 |
| Msa1446760 | AT5G16770.3 | 64.444 | 45 | 16 | 0 | 1 | 45 | 1 | 45 | 1.08e-17 | 76.3 |
| Msa1446760 | AT5G16770.1 | 64.444 | 45 | 16 | 0 | 1 | 45 | 1 | 45 | 1.22e-17 | 76.3 |
| Msa1446760 | AT5G16770.2 | 64.444 | 45 | 16 | 0 | 1 | 45 | 1 | 45 | 1.22e-17 | 76.3 |
| Msa1446760 | AT3G61250.1 | 55.556 | 45 | 20 | 0 | 1 | 45 | 1 | 45 | 5.47e-17 | 73.9 |
| Msa1446760 | AT4G28110.1 | 58.333 | 48 | 20 | 0 | 1 | 48 | 1 | 48 | 8.61e-17 | 73.2 |
| Msa1446760 | AT5G15310.4 | 52.083 | 48 | 23 | 0 | 1 | 48 | 1 | 48 | 1.22e-16 | 72.4 |
| Msa1446760 | AT5G15310.1 | 52.083 | 48 | 23 | 0 | 1 | 48 | 1 | 48 | 1.45e-16 | 73.2 |
| Msa1446760 | AT5G15310.2 | 52.083 | 48 | 23 | 0 | 1 | 48 | 1 | 48 | 1.53e-16 | 72.8 |
| Msa1446760 | AT5G49330.1 | 57.778 | 45 | 19 | 0 | 1 | 45 | 1 | 45 | 2.16e-15 | 70.1 |
| Msa1446760 | AT3G01140.2 | 53.333 | 45 | 21 | 0 | 1 | 45 | 1 | 45 | 2.89e-15 | 69.7 |
| Msa1446760 | AT2G47460.1 | 57.778 | 45 | 19 | 0 | 1 | 45 | 1 | 45 | 4.80e-15 | 69.3 |
| Msa1446760 | AT1G34670.1 | 59.091 | 44 | 18 | 0 | 1 | 44 | 1 | 44 | 4.91e-15 | 68.9 |
| Msa1446760 | AT5G62470.1 | 55.556 | 45 | 20 | 0 | 1 | 45 | 1 | 45 | 5.28e-15 | 68.9 |
| Msa1446760 | AT5G62470.2 | 55.556 | 45 | 20 | 0 | 1 | 45 | 1 | 45 | 5.46e-15 | 68.9 |
| Msa1446760 | AT4G05100.1 | 58.696 | 46 | 18 | 1 | 1 | 45 | 1 | 46 | 6.39e-15 | 68.6 |
| Msa1446760 | AT1G08810.1 | 53.333 | 45 | 21 | 0 | 1 | 45 | 1 | 45 | 1.05e-14 | 67.8 |
| Msa1446760 | AT3G47600.1 | 53.333 | 45 | 21 | 0 | 1 | 45 | 1 | 45 | 1.12e-14 | 67.8 |
| Msa1446760 | AT4G22680.1 | 40.741 | 81 | 38 | 2 | 1 | 72 | 1 | 80 | 1.37e-14 | 67.0 |
| Msa1446760 | AT3G13540.1 | 60.976 | 41 | 16 | 0 | 5 | 45 | 16 | 56 | 1.91e-14 | 66.6 |
| Msa1446760 | AT3G01140.1 | 53.333 | 45 | 21 | 0 | 1 | 45 | 44 | 88 | 2.05e-14 | 67.4 |
| Msa1446760 | AT3G62610.1 | 55.556 | 45 | 20 | 0 | 1 | 45 | 1 | 45 | 3.08e-14 | 66.6 |
| Msa1446760 | AT1G79180.2 | 60.976 | 41 | 16 | 0 | 5 | 45 | 7 | 47 | 4.96e-14 | 66.2 |
| Msa1446760 | AT1G79180.1 | 60.976 | 41 | 16 | 0 | 5 | 45 | 7 | 47 | 5.13e-14 | 65.9 |
| Msa1446760 | AT1G74650.1 | 53.333 | 45 | 21 | 0 | 1 | 45 | 1 | 45 | 6.38e-14 | 65.9 |
| Msa1446760 | AT3G28910.1 | 53.333 | 45 | 21 | 0 | 1 | 45 | 1 | 45 | 9.61e-14 | 65.5 |
| Msa1446760 | AT5G16600.1 | 55.556 | 45 | 20 | 0 | 1 | 45 | 1 | 45 | 2.26e-13 | 64.3 |
| Msa1446760 | AT4G12350.1 | 57.778 | 45 | 19 | 0 | 1 | 45 | 1 | 45 | 2.67e-13 | 63.9 |
| Msa1446760 | AT1G74080.1 | 51.111 | 45 | 22 | 0 | 1 | 45 | 1 | 45 | 7.37e-13 | 62.8 |
| Msa1446760 | AT1G66230.1 | 53.333 | 45 | 21 | 0 | 1 | 45 | 1 | 45 | 7.44e-13 | 62.8 |
| Msa1446760 | AT1G35515.1 | 53.333 | 45 | 21 | 0 | 1 | 45 | 1 | 45 | 8.46e-13 | 61.6 |
| Msa1446760 | AT1G22640.1 | 51.111 | 45 | 22 | 0 | 1 | 45 | 1 | 45 | 1.36e-12 | 61.6 |
| Msa1446760 | AT1G16490.1 | 58.537 | 41 | 17 | 0 | 5 | 45 | 7 | 47 | 1.92e-12 | 61.2 |
| Msa1446760 | AT2G16720.1 | 51.111 | 45 | 22 | 0 | 1 | 45 | 1 | 45 | 2.47e-12 | 61.2 |
| Msa1446760 | AT1G56160.1 | 56.098 | 41 | 18 | 0 | 5 | 45 | 7 | 47 | 2.88e-12 | 61.2 |
| Msa1446760 | AT5G60890.1 | 48.889 | 45 | 23 | 0 | 1 | 45 | 1 | 45 | 5.23e-12 | 60.5 |
| Msa1446760 | AT1G18570.1 | 47.826 | 46 | 23 | 1 | 1 | 45 | 1 | 46 | 5.55e-12 | 60.5 |
| Msa1446760 | AT5G10280.1 | 46.667 | 45 | 24 | 0 | 1 | 45 | 1 | 45 | 6.08e-12 | 60.5 |
| Msa1446760 | AT5G07690.1 | 51.111 | 45 | 22 | 0 | 1 | 45 | 1 | 45 | 7.37e-12 | 60.1 |
| Msa1446760 | AT4G37780.1 | 50.000 | 46 | 22 | 1 | 1 | 45 | 1 | 46 | 7.73e-12 | 60.1 |
| Msa1446760 | AT4G09460.1 | 51.111 | 45 | 22 | 0 | 1 | 45 | 1 | 45 | 7.84e-12 | 59.3 |
| Msa1446760 | AT4G17785.1 | 52.174 | 46 | 21 | 1 | 1 | 45 | 1 | 46 | 1.02e-11 | 59.7 |
| Msa1446760 | AT4G17785.2 | 52.174 | 46 | 21 | 1 | 1 | 45 | 1 | 46 | 1.17e-11 | 59.7 |
| Msa1446760 | AT5G61420.2 | 48.889 | 45 | 23 | 0 | 1 | 45 | 1 | 45 | 1.42e-11 | 59.3 |
| Msa1446760 | AT4G34990.1 | 51.111 | 45 | 22 | 0 | 1 | 45 | 1 | 45 | 2.65e-11 | 58.2 |
| Msa1446760 | AT4G38620.1 | 48.889 | 45 | 23 | 0 | 1 | 45 | 1 | 45 | 2.90e-11 | 58.2 |
| Msa1446760 | AT4G01680.3 | 51.111 | 45 | 22 | 0 | 1 | 45 | 1 | 45 | 3.50e-11 | 57.8 |
| Msa1446760 | AT4G01680.2 | 50.000 | 52 | 22 | 1 | 1 | 52 | 1 | 48 | 4.17e-11 | 58.2 |
| Msa1446760 | AT1G09540.1 | 48.889 | 45 | 23 | 0 | 1 | 45 | 1 | 45 | 4.61e-11 | 57.8 |
| Msa1446760 | AT3G13890.1 | 44.681 | 47 | 26 | 0 | 1 | 47 | 1 | 47 | 5.40e-11 | 57.8 |
| Msa1446760 | AT4G01680.1 | 51.111 | 45 | 22 | 0 | 1 | 45 | 1 | 45 | 6.25e-11 | 57.4 |
| Msa1446760 | AT3G13890.2 | 46.667 | 45 | 24 | 0 | 1 | 45 | 1 | 45 | 7.84e-11 | 57.4 |
Find 54 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGAGCAGATTGAGATTT+TGG | 0.160430 | tig0031493:-651 | Msa1446760:three_prime_UTR |
| ACAGCATGTCATATAATTTA+AGG | 0.194598 | tig0031493:+2883 | None:intergenic |
| CACTGCTTTGAATTCCTCTT+TGG | 0.248523 | tig0031493:+2084 | None:intergenic |
| AAACATATGGTCATGGAAAT+TGG | 0.254027 | tig0031493:-2947 | Msa1446760:CDS |
| AACCCTTCACTCATCTTCTT+TGG | 0.255435 | tig0031493:+239 | None:intergenic |
| TGCCTCTTCAAAATGGATTC+AGG | 0.257186 | tig0031493:+2058 | None:intergenic |
| GGTGTGATTAACTCTATATT+TGG | 0.263363 | tig0031493:-765 | Msa1446760:intron |
| TGTTAAGAATGCGTTGGATT+TGG | 0.301849 | tig0031493:-295 | Msa1446760:three_prime_UTR |
| AAATTATATGACATGCTGTC+TGG | 0.333708 | tig0031493:-2879 | Msa1446760:CDS |
| TTGTGCTCACCGGCTTGTTT+AGG | 0.348074 | tig0031493:+2915 | None:intergenic |
| ATTTCTCATATTCAAACATA+TGG | 0.352912 | tig0031493:-2960 | Msa1446760:CDS |
| CTGAAACAAGGGAACTCATT+TGG | 0.359058 | tig0031493:-1971 | Msa1446760:three_prime_UTR |
| AAAACTTAGTCATTCCTTTG+AGG | 0.373320 | tig0031493:-843 | Msa1446760:three_prime_UTR |
| AGATAACAATCTTTCATCAT+TGG | 0.389135 | tig0031493:-786 | Msa1446760:three_prime_UTR |
| ATATTCTTTAGCGTACTGTT+TGG | 0.394269 | tig0031493:+1941 | None:intergenic |
| CAATGTAGATCAAACTGGTT+TGG | 0.399242 | tig0031493:-816 | Msa1446760:three_prime_UTR |
| AGTTCCGATTTCTTAGTCAA+TGG | 0.436083 | tig0031493:+2017 | None:intergenic |
| TGGAAAACATTGTGCCAGAC+TGG | 0.441223 | tig0031493:-631 | Msa1446760:three_prime_UTR |
| GAAACCAATGTAGATCAAAC+TGG | 0.445612 | tig0031493:-821 | Msa1446760:three_prime_UTR |
| ACCTTCTTGACAAGCCAGTC+TGG | 0.454726 | tig0031493:+617 | None:intergenic |
| GTTCCGATTTCTTAGTCAAT+GGG | 0.455450 | tig0031493:+2018 | None:intergenic |
| TCTGTACTGCAAATGATTGC+TGG | 0.459211 | tig0031493:-190 | Msa1446760:three_prime_UTR |
| AAATTCTGTCCAATAATAGA+AGG | 0.464702 | tig0031493:+62 | None:intergenic |
| ATGCCCATTGACTAAGAAAT+CGG | 0.466615 | tig0031493:-2021 | Msa1446760:exon |
| TCCAGTCGACTAAAACTTCT+CGG | 0.468992 | tig0031493:-270 | Msa1446760:three_prime_UTR |
| CAAACCAGTTTGATCTACAT+TGG | 0.479317 | tig0031493:+817 | None:intergenic |
| ATCTACATTGGTTTCCTCAA+AGG | 0.486879 | tig0031493:+829 | None:intergenic |
| AATTATATGACATGCTGTCT+GGG | 0.495044 | tig0031493:-2878 | Msa1446760:CDS |
| AAACCCTTGTTGTGAAAGGA+TGG | 0.495507 | tig0031493:-3027 | Msa1446760:CDS |
| GAAGAAGAGATCTGAAACAA+GGG | 0.504984 | tig0031493:-1982 | Msa1446760:three_prime_UTR |
| TGATCTTCTTCAGCACTCCA+TGG | 0.506707 | tig0031493:+2990 | None:intergenic |
| GCCAGACTGGCTTGTCAAGA+AGG | 0.515398 | tig0031493:-618 | Msa1446760:intron |
| GCAAATGATTGCTGGTAGCA+AGG | 0.534400 | tig0031493:-182 | Msa1446760:three_prime_UTR |
| TGGATGTATAAAGTCCAAAT+CGG | 0.537765 | tig0031493:+98 | None:intergenic |
| ACGCTAAAGAATATGATGTC+GGG | 0.540208 | tig0031493:-1932 | Msa1446760:three_prime_UTR |
| GAATGTTAATTTGTGCTCAC+CGG | 0.544029 | tig0031493:+2905 | None:intergenic |
| CAAATGATTGCTGGTAGCAA+GGG | 0.547049 | tig0031493:-181 | Msa1446760:three_prime_UTR |
| CATATTCAAACATATGGTCA+TGG | 0.552986 | tig0031493:-2954 | Msa1446760:CDS |
| TAGAAGGAAAACTTAAAGCA+TGG | 0.553010 | tig0031493:+78 | None:intergenic |
| TTCCCATCCTTTCACAACAA+GGG | 0.560201 | tig0031493:+3024 | None:intergenic |
| ATTCCCATCCTTTCACAACA+AGG | 0.564405 | tig0031493:+3023 | None:intergenic |
| TACGCTAAAGAATATGATGT+CGG | 0.569624 | tig0031493:-1933 | Msa1446760:three_prime_UTR |
| TGACCAAAGAAGATGAGTGA+AGG | 0.570956 | tig0031493:-242 | Msa1446760:three_prime_UTR |
| TTGCAGTGTTAAGAATGCGT+TGG | 0.580459 | tig0031493:-301 | Msa1446760:intron |
| AACCCTTGTTGTGAAAGGAT+GGG | 0.583219 | tig0031493:-3026 | Msa1446760:CDS |
| AGAAGAAGAGATCTGAAACA+AGG | 0.585677 | tig0031493:-1983 | Msa1446760:three_prime_UTR |
| CGTGCTCTTCCTAAACAAGC+CGG | 0.595020 | tig0031493:-2924 | Msa1446760:CDS |
| CTGAACAACTTCGACTGAGT+GGG | 0.600445 | tig0031493:-2200 | Msa1446760:intron |
| GACCAAAGAAGATGAGTGAA+GGG | 0.607521 | tig0031493:-241 | Msa1446760:three_prime_UTR |
| TGTTTGTAGAATGGCCAAAG+AGG | 0.617348 | tig0031493:-2098 | Msa1446760:intron |
| TCTGAACAACTTCGACTGAG+TGG | 0.627134 | tig0031493:-2201 | Msa1446760:CDS |
| GTTGTGAAAGGATGGGAATG+AGG | 0.630642 | tig0031493:-3019 | Msa1446760:CDS |
| GAAAGGATGGGAATGAGGAA+AGG | 0.635163 | tig0031493:-3014 | Msa1446760:CDS |
| TGGGAATGAGGAAAGGACCA+TGG | 0.641078 | tig0031493:-3007 | Msa1446760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATAATTCAACAAAT+TGG | - | tig0031493:1411-1430 | Msa1446760:intron | 10.0% |
| !! | ATTATATGATATGATTGTTT+AGG | - | tig0031493:248-267 | Msa1446760:three_prime_UTR | 15.0% |
| !!! | TAAATTATATTTGTTAGAGA+CGG | + | tig0031493:514-533 | None:intergenic | 15.0% |
| !! | ATATACTTATTTACTTAATC+TGG | - | tig0031493:1223-1242 | Msa1446760:intron | 15.0% |
| !! | TATACTTATTTACTTAATCT+GGG | - | tig0031493:1224-1243 | Msa1446760:intron | 15.0% |
| !! | TAAAAAATACAACCTTAAAA+TGG | + | tig0031493:1618-1637 | None:intergenic | 15.0% |
| !!! | TTTTAAGGTTGTATTTTTTA+AGG | - | tig0031493:1618-1637 | Msa1446760:intron | 15.0% |
| !!! | TTTAAGGTTGTATTTTTTAA+GGG | - | tig0031493:1619-1638 | Msa1446760:intron | 15.0% |
| !! | AAAAAATTACAGTAATAGAT+TGG | + | tig0031493:1804-1823 | None:intergenic | 15.0% |
| !!! | AATCTATTACTGTAATTTTT+TGG | - | tig0031493:1803-1822 | Msa1446760:intron | 15.0% |
| !!! | ATCTATTACTGTAATTTTTT+GGG | - | tig0031493:1804-1823 | Msa1446760:intron | 15.0% |
| !! | ATTTCTCATATTCAAACATA+TGG | - | tig0031493:125-144 | Msa1446760:three_prime_UTR | 20.0% |
| !!! | ATTATAATTTTTCGTAGAGA+CGG | + | tig0031493:586-605 | None:intergenic | 20.0% |
| !! | TTAAAATAAAATTAGTGGCA+CGG | - | tig0031493:606-625 | Msa1446760:intron | 20.0% |
| !! | AAACACAAAACAATAATCTT+TGG | + | tig0031493:936-955 | None:intergenic | 20.0% |
| !! | TTAAACAAAAGGATATGATT+AGG | - | tig0031493:1247-1266 | Msa1446760:intron | 20.0% |
| !!! | GCAAAATAATCCTTAATTTT+GGG | + | tig0031493:1353-1372 | None:intergenic | 20.0% |
| !!! | TGCAAAATAATCCTTAATTT+TGG | + | tig0031493:1354-1373 | None:intergenic | 20.0% |
| !! | ATTCAAGATTATTACTGTAA+TGG | - | tig0031493:1849-1868 | Msa1446760:intron | 20.0% |
| !! | GAATTAAAACCAAAATAAGA+TGG | + | tig0031493:2097-2116 | None:intergenic | 20.0% |
| !!! | TCTTATTTTGGTTTTAATTC+TGG | - | tig0031493:2097-2116 | Msa1446760:intron | 20.0% |
| !!! | TTTTTTTTGAAGAATGACTA+AGG | + | tig0031493:2217-2236 | None:intergenic | 20.0% |
| !!! | TGAATTTATGTTTGCTATAA+TGG | - | tig0031493:2603-2622 | Msa1446760:intron | 20.0% |
| !!! | TTAAGTTTTCCTTCTATTAT+TGG | - | tig0031493:3014-3033 | Msa1446760:CDS | 20.0% |
| ! | ACAGCATGTCATATAATTTA+AGG | + | tig0031493:205-224 | None:intergenic | 25.0% |
| !!! | ATGATTGTTTAGGTTTGTTA+AGG | - | tig0031493:258-277 | Msa1446760:three_prime_UTR | 25.0% |
| ! | AATTAGAGACCGAATTTAAT+TGG | - | tig0031493:405-424 | Msa1446760:intron | 25.0% |
| ! | TAAAATAAAATTAGTGGCAC+GGG | - | tig0031493:607-626 | Msa1446760:intron | 25.0% |
| ! | AACATTAATCTGAAAGTTAC+TGG | + | tig0031493:1393-1412 | None:intergenic | 25.0% |
| ! | GTGTCAAATATTTGAATAGT+TGG | + | tig0031493:1518-1537 | None:intergenic | 25.0% |
| ! | CTATTCAAATATTTGACACA+AGG | - | tig0031493:1519-1538 | Msa1446760:intron | 25.0% |
| !! | ATCATCCATAGATTAATTTG+GGG | + | tig0031493:1584-1603 | None:intergenic | 25.0% |
| ! | CATCATCCATAGATTAATTT+GGG | + | tig0031493:1585-1604 | None:intergenic | 25.0% |
| ! | TCATCATCCATAGATTAATT+TGG | + | tig0031493:1586-1605 | None:intergenic | 25.0% |
| !! | GTAATAGATTGGATTAGAAT+TGG | + | tig0031493:1793-1812 | None:intergenic | 25.0% |
| !!! | GAGAAAAAATTGCTTTTGAA+AGG | + | tig0031493:2172-2191 | None:intergenic | 25.0% |
| !!! | AATTTTTTCTCTTGTAATGC+AGG | - | tig0031493:2181-2200 | Msa1446760:intron | 25.0% |
| ! | AGATAACAATCTTTCATCAT+TGG | - | tig0031493:2299-2318 | Msa1446760:intron | 25.0% |
| !!! | CCTTTGTTCTTTTAAAGTAT+CGG | - | tig0031493:2544-2563 | Msa1446760:intron | 25.0% |
| !!! | TACTTTGAAATAAATGACAG+CGG | + | tig0031493:2704-2723 | None:intergenic | 25.0% |
| ! | AAATTCTGTCCAATAATAGA+AGG | + | tig0031493:3026-3045 | None:intergenic | 25.0% |
| CATATTCAAACATATGGTCA+TGG | - | tig0031493:131-150 | Msa1446760:three_prime_UTR | 30.0% | |
| AAACATATGGTCATGGAAAT+TGG | - | tig0031493:138-157 | Msa1446760:three_prime_UTR | 30.0% | |
| AAATTATATGACATGCTGTC+TGG | - | tig0031493:206-225 | Msa1446760:three_prime_UTR | 30.0% | |
| AATTATATGACATGCTGTCT+GGG | - | tig0031493:207-226 | Msa1446760:three_prime_UTR | 30.0% | |
| TTCTAGTAGTGTTTGATATC+AGG | + | tig0031493:326-345 | None:intergenic | 30.0% | |
| !! | TGACTTTTTACCTTTAGAGA+CGG | - | tig0031493:441-460 | Msa1446760:intron | 30.0% |
| !! | TTTGGTGTGAAAGCAATTTT+GGG | + | tig0031493:635-654 | None:intergenic | 30.0% |
| !!! | ATTTGGTGTGAAAGCAATTT+TGG | + | tig0031493:636-655 | None:intergenic | 30.0% |
| ! | ATTTTCAGTCTTTCACGATA+GGG | + | tig0031493:687-706 | None:intergenic | 30.0% |
| ! | TATTGAGAGCTTCATTTTGT+TGG | + | tig0031493:765-784 | None:intergenic | 30.0% |
| CGATTTCATTGTTTGTAGAA+TGG | - | tig0031493:978-997 | Msa1446760:intron | 30.0% | |
| ATATTCTTTAGCGTACTGTT+TGG | + | tig0031493:1147-1166 | None:intergenic | 30.0% | |
| TACGCTAAAGAATATGATGT+CGG | - | tig0031493:1152-1171 | Msa1446760:intron | 30.0% | |
| CTTAATCTGGGTTAAACAAA+AGG | - | tig0031493:1236-1255 | Msa1446760:intron | 30.0% | |
| AAGTGTGAAGCTAAACTTAA+GGG | - | tig0031493:1273-1292 | Msa1446760:intron | 30.0% | |
| ! | TGAACAAGAATTTAGCTTCA+GGG | + | tig0031493:1314-1333 | None:intergenic | 30.0% |
| ! | ATGAACAAGAATTTAGCTTC+AGG | + | tig0031493:1315-1334 | None:intergenic | 30.0% |
| TTGTTATCGACCCAAAATTA+AGG | - | tig0031493:1340-1359 | Msa1446760:intron | 30.0% | |
| AATTCCCCCAAATTAATCTA+TGG | - | tig0031493:1576-1595 | Msa1446760:intron | 30.0% | |
| ! | TCATCCATAGATTAATTTGG+GGG | + | tig0031493:1583-1602 | None:intergenic | 30.0% |
| ! | TGAAGATACTGTCCATTTTA+AGG | - | tig0031493:1603-1622 | Msa1446760:intron | 30.0% |
| !!! | ATTTTTTGGGAACATAGTTG+AGG | - | tig0031493:1817-1836 | Msa1446760:intron | 30.0% |
| !!! | TTTTTTGGGAACATAGTTGA+GGG | - | tig0031493:1818-1837 | Msa1446760:intron | 30.0% |
| CACGAGATTTAGTTGAAAAT+TGG | - | tig0031493:1992-2011 | Msa1446760:three_prime_UTR | 30.0% | |
| TTGTGTAAGCATGTTATACT+TGG | - | tig0031493:2022-2041 | Msa1446760:exon | 30.0% | |
| !! | ATTTAGCTGCCATCTTATTT+TGG | - | tig0031493:2085-2104 | Msa1446760:CDS | 30.0% |
| AAAACTTAGTCATTCCTTTG+AGG | - | tig0031493:2242-2261 | Msa1446760:intron | 30.0% | |
| GGTGTGATTAACTCTATATT+TGG | - | tig0031493:2320-2339 | Msa1446760:intron | 30.0% | |
| ! | CCGATACTTTAAAAGAACAA+AGG | + | tig0031493:2547-2566 | None:intergenic | 30.0% |
| !!! | TTAAAGTATCGGTCTCTTTT+AGG | - | tig0031493:2555-2574 | Msa1446760:intron | 30.0% |
| !!! | TAAAGTATCGGTCTCTTTTA+GGG | - | tig0031493:2556-2575 | Msa1446760:intron | 30.0% |
| !! | AAATAAATGACAGCGGATTT+TGG | + | tig0031493:2697-2716 | None:intergenic | 30.0% |
| !! | AATTTTGAGTATCACCGATT+TGG | - | tig0031493:2973-2992 | Msa1446760:CDS | 30.0% |
| TGGATGTATAAAGTCCAAAT+CGG | + | tig0031493:2990-3009 | None:intergenic | 30.0% | |
| TAGAAGGAAAACTTAAAGCA+TGG | + | tig0031493:3010-3029 | None:intergenic | 30.0% | |
| ! | CAAAAAACCCTTGTTGTGAA+AGG | - | tig0031493:54-73 | Msa1446760:three_prime_UTR | 35.0% |
| !! | GAATGTTAATTTGTGCTCAC+CGG | + | tig0031493:183-202 | None:intergenic | 35.0% |
| !! | TGTTTAGGTTTGTTAAGGTG+TGG | - | tig0031493:263-282 | Msa1446760:three_prime_UTR | 35.0% |
| AGAAAAATCCTGAATACCGA+CGG | - | tig0031493:342-361 | Msa1446760:intron | 35.0% | |
| ! | GGATTTTATTCTGTCTCCAT+TGG | - | tig0031493:376-395 | Msa1446760:intron | 35.0% |
| TCTCTAAATTCCGTCTCTAA+AGG | + | tig0031493:454-473 | None:intergenic | 35.0% | |
| TTAGAGACGGAATTTAGAGA+CGG | - | tig0031493:454-473 | Msa1446760:intron | 35.0% | |
| !! | TTCGTAGAGACGGATTAATT+CGG | + | tig0031493:576-595 | None:intergenic | 35.0% |
| ! | TCACGATAGGGGAAAATTTT+TGG | + | tig0031493:675-694 | None:intergenic | 35.0% |
| ! | TTTTCAGTCTTTCACGATAG+GGG | + | tig0031493:686-705 | None:intergenic | 35.0% |
| ! | GATTTTCAGTCTTTCACGAT+AGG | + | tig0031493:688-707 | None:intergenic | 35.0% |
| ! | TTTTGCAATAGAGAGGGTTA+GGG | + | tig0031493:732-751 | None:intergenic | 35.0% |
| ! | ATTTTGCAATAGAGAGGGTT+AGG | + | tig0031493:733-752 | None:intergenic | 35.0% |
| !! | TTCCTGAATCCATTTTGAAG+AGG | - | tig0031493:1025-1044 | Msa1446760:intron | 35.0% |
| !! | TCCATTTTGAAGAGGCAAAA+AGG | - | tig0031493:1033-1052 | Msa1446760:intron | 35.0% |
| ! | TCCTTTTTGCCTCTTCAAAA+TGG | + | tig0031493:1037-1056 | None:intergenic | 35.0% |
| TTTGAAGAGGCAAAAAGGAA+TGG | - | tig0031493:1038-1057 | Msa1446760:intron | 35.0% | |
| TTGAAGAGGCAAAAAGGAAT+GGG | - | tig0031493:1039-1058 | Msa1446760:intron | 35.0% | |
| ! | ATGCCCATTGACTAAGAAAT+CGG | - | tig0031493:1064-1083 | Msa1446760:intron | 35.0% |
| GTTCCGATTTCTTAGTCAAT+GGG | + | tig0031493:1070-1089 | None:intergenic | 35.0% | |
| AGTTCCGATTTCTTAGTCAA+TGG | + | tig0031493:1071-1090 | None:intergenic | 35.0% | |
| ! | AGAAGAAGAGATCTGAAACA+AGG | - | tig0031493:1102-1121 | Msa1446760:intron | 35.0% |
| ! | GAAGAAGAGATCTGAAACAA+GGG | - | tig0031493:1103-1122 | Msa1446760:intron | 35.0% |
| ACGCTAAAGAATATGATGTC+GGG | - | tig0031493:1153-1172 | Msa1446760:intron | 35.0% | |
| GAAGTGTGAAGCTAAACTTA+AGG | - | tig0031493:1272-1291 | Msa1446760:intron | 35.0% | |
| GCAATTCTAATCCAATCTGA+GGG | - | tig0031493:1710-1729 | Msa1446760:intron | 35.0% | |
| CTGTCATTAGAGATTCCATA+TGG | - | tig0031493:1907-1926 | Msa1446760:intron | 35.0% | |
| GCTTACATCTACTTACCATA+TGG | + | tig0031493:1925-1944 | None:intergenic | 35.0% | |
| TGTAAGCATGTTATGCTTAG+TGG | - | tig0031493:1938-1957 | Msa1446760:three_prime_UTR | 35.0% | |
| !! | ATCTACATTGGTTTCCTCAA+AGG | + | tig0031493:2259-2278 | None:intergenic | 35.0% |
| GAAACCAATGTAGATCAAAC+TGG | - | tig0031493:2264-2283 | Msa1446760:intron | 35.0% | |
| CAAACCAGTTTGATCTACAT+TGG | + | tig0031493:2271-2290 | None:intergenic | 35.0% | |
| CAATGTAGATCAAACTGGTT+TGG | - | tig0031493:2269-2288 | Msa1446760:intron | 35.0% | |
| CTAATCTTATTCCTCCCAAT+AGG | - | tig0031493:2405-2424 | Msa1446760:intron | 35.0% | |
| ! | TGAAGAGCAGATTGAGATTT+TGG | - | tig0031493:2434-2453 | Msa1446760:intron | 35.0% |
| TGTTAAGAATGCGTTGGATT+TGG | - | tig0031493:2790-2809 | Msa1446760:intron | 35.0% | |
| ! | AAACCCTTGTTGTGAAAGGA+TGG | - | tig0031493:58-77 | Msa1446760:three_prime_UTR | 40.0% |
| ! | AACCCTTGTTGTGAAAGGAT+GGG | - | tig0031493:59-78 | Msa1446760:three_prime_UTR | 40.0% |
| TTCCCATCCTTTCACAACAA+GGG | + | tig0031493:64-83 | None:intergenic | 40.0% | |
| ATTCCCATCCTTTCACAACA+AGG | + | tig0031493:65-84 | None:intergenic | 40.0% | |
| GTAAGAGTTGTAGACTTCGT+TGG | - | tig0031493:285-304 | Msa1446760:three_prime_UTR | 40.0% | |
| TCTAAATTCCGTCGGTATTC+AGG | + | tig0031493:353-372 | None:intergenic | 40.0% | |
| ATACCGACGGAATTTAGAGA+CGG | - | tig0031493:355-374 | Msa1446760:intron | 40.0% | |
| AATCCGTCTCTAAATTCCGT+CGG | + | tig0031493:361-380 | None:intergenic | 40.0% | |
| TATTCTGTCTCCATTGGAGA+CGG | - | tig0031493:382-401 | Msa1446760:intron | 40.0% | |
| CCGTCTCAGCCAATTAAATT+CGG | + | tig0031493:417-436 | None:intergenic | 40.0% | |
| CCGAATTTAATTGGCTGAGA+CGG | - | tig0031493:414-433 | Msa1446760:intron | 40.0% | |
| GAGACGGAAACTATAACTGA+CGG | + | tig0031493:486-505 | None:intergenic | 40.0% | |
| GCTGGAGGGATTGTTTAATT+TGG | + | tig0031493:653-672 | None:intergenic | 40.0% | |
| !!! | GATAGGGGAAAATTTTTGGC+TGG | + | tig0031493:671-690 | None:intergenic | 40.0% |
| !! | GGTGGATTTTGCAATAGAGA+GGG | + | tig0031493:738-757 | None:intergenic | 40.0% |
| !!! | TGGTGGATTTTGCAATAGAG+AGG | + | tig0031493:739-758 | None:intergenic | 40.0% |
| !!! | CTTCATTTTGTTGGTGTTGG+TGG | + | tig0031493:756-775 | None:intergenic | 40.0% |
| ! | GAGCTTCATTTTGTTGGTGT+TGG | + | tig0031493:759-778 | None:intergenic | 40.0% |
| TATTCGCAAAAGCAATCGCA+GGG | + | tig0031493:795-814 | None:intergenic | 40.0% | |
| ATATTCGCAAAAGCAATCGC+AGG | + | tig0031493:796-815 | None:intergenic | 40.0% | |
| !! | GCGATTGCTTTTGCGAATAT+TGG | - | tig0031493:796-815 | Msa1446760:three_prime_UTR | 40.0% |
| TGTTTGTAGAATGGCCAAAG+AGG | - | tig0031493:987-1006 | Msa1446760:intron | 40.0% | |
| ! | CACTGCTTTGAATTCCTCTT+TGG | + | tig0031493:1004-1023 | None:intergenic | 40.0% |
| ! | TGCCTCTTCAAAATGGATTC+AGG | + | tig0031493:1030-1049 | None:intergenic | 40.0% |
| TGAAGAGGCAAAAAGGAATG+GGG | - | tig0031493:1040-1059 | Msa1446760:intron | 40.0% | |
| CTGAAACAAGGGAACTCATT+TGG | - | tig0031493:1114-1133 | Msa1446760:intron | 40.0% | |
| AGATGCAACAATCTGGTGAT+AGG | + | tig0031493:1482-1501 | None:intergenic | 40.0% | |
| TATCACCAGATTGTTGCATC+TGG | - | tig0031493:1481-1500 | Msa1446760:intron | 40.0% | |
| ATCACCAGATTGTTGCATCT+GGG | - | tig0031493:1482-1501 | Msa1446760:intron | 40.0% | |
| TTTACCCAGATGCAACAATC+TGG | + | tig0031493:1489-1508 | None:intergenic | 40.0% | |
| !! | AGGTTGATGTTCTTGCTAAG+AGG | - | tig0031493:1539-1558 | Msa1446760:intron | 40.0% |
| CGCAATTCTAATCCAATCTG+AGG | - | tig0031493:1709-1728 | Msa1446760:intron | 40.0% | |
| !! | AGGGAGTTCTGGAACTTTAT+TGG | - | tig0031493:1729-1748 | Msa1446760:intron | 40.0% |
| GGAACATAGTTGAGGGATTA+TGG | - | tig0031493:1825-1844 | Msa1446760:intron | 40.0% | |
| GTCAAGAAGGTAGTTTCTTC+TGG | - | tig0031493:2480-2499 | Msa1446760:intron | 40.0% | |
| TTGCAGTGTTAAGAATGCGT+TGG | - | tig0031493:2784-2803 | Msa1446760:intron | 40.0% | |
| TCCAGTCGACTAAAACTTCT+CGG | - | tig0031493:2815-2834 | Msa1446760:intron | 40.0% | |
| TGACCAAAGAAGATGAGTGA+AGG | - | tig0031493:2843-2862 | Msa1446760:intron | 40.0% | |
| GACCAAAGAAGATGAGTGAA+GGG | - | tig0031493:2844-2863 | Msa1446760:intron | 40.0% | |
| AACCCTTCACTCATCTTCTT+TGG | + | tig0031493:2849-2868 | None:intergenic | 40.0% | |
| TCTGTACTGCAAATGATTGC+TGG | - | tig0031493:2895-2914 | Msa1446760:CDS | 40.0% | |
| CAAATGATTGCTGGTAGCAA+GGG | - | tig0031493:2904-2923 | Msa1446760:CDS | 40.0% | |
| GTTGTGAAAGGATGGGAATG+AGG | - | tig0031493:66-85 | Msa1446760:three_prime_UTR | 45.0% | |
| GAAAGGATGGGAATGAGGAA+AGG | - | tig0031493:71-90 | Msa1446760:three_prime_UTR | 45.0% | |
| TGATCTTCTTCAGCACTCCA+TGG | + | tig0031493:98-117 | None:intergenic | 45.0% | |
| GTCTCTAATTCCGTCTCCAA+TGG | + | tig0031493:395-414 | None:intergenic | 45.0% | |
| !! | AGACGGATTAATTCGGTCTC+TGG | + | tig0031493:569-588 | None:intergenic | 45.0% |
| !!! | GGGGAAAATTTTTGGCTGGA+GGG | + | tig0031493:667-686 | None:intergenic | 45.0% |
| !!! | AGGGGAAAATTTTTGGCTGG+AGG | + | tig0031493:668-687 | None:intergenic | 45.0% |
| TCTGAACAACTTCGACTGAG+TGG | - | tig0031493:884-903 | Msa1446760:intron | 45.0% | |
| CTGAACAACTTCGACTGAGT+GGG | - | tig0031493:885-904 | Msa1446760:intron | 45.0% | |
| AATCCAATCTGAGGGAGTTC+TGG | - | tig0031493:1718-1737 | Msa1446760:intron | 45.0% | |
| GCTCTTCAGCTTCTCCTATT+GGG | + | tig0031493:2422-2441 | None:intergenic | 45.0% | |
| TGCTCTTCAGCTTCTCCTAT+TGG | + | tig0031493:2423-2442 | None:intergenic | 45.0% | |
| TGGAAAACATTGTGCCAGAC+TGG | - | tig0031493:2454-2473 | Msa1446760:intron | 45.0% | |
| AGTGAAGAAAGAGAACCCAC+TGG | + | tig0031493:2518-2537 | None:intergenic | 45.0% | |
| !! | TCCGAGAAGTTTTAGTCGAC+TGG | + | tig0031493:2819-2838 | None:intergenic | 45.0% |
| GCAAATGATTGCTGGTAGCA+AGG | - | tig0031493:2903-2922 | Msa1446760:CDS | 45.0% | |
| !!! | ATAATTTAAAATAAAATTAG+TGG | - | tig0031493:601-620 | Msa1446760:intron | 5.0% |
| !! | TAAATAAGTATATTAATAAA+TGG | + | tig0031493:1216-1235 | None:intergenic | 5.0% |
| !!! | TTTTAACAATTATTAAAAAA+TGG | + | tig0031493:1454-1473 | None:intergenic | 5.0% |
| TGGGAATGAGGAAAGGACCA+TGG | - | tig0031493:78-97 | Msa1446760:three_prime_UTR | 50.0% | |
| CGTGCTCTTCCTAAACAAGC+CGG | - | tig0031493:161-180 | Msa1446760:three_prime_UTR | 50.0% | |
| !! | TTGTGCTCACCGGCTTGTTT+AGG | + | tig0031493:173-192 | None:intergenic | 50.0% |
| GTTAGAGACGGAAGCAGAGA+CGG | + | tig0031493:502-521 | None:intergenic | 50.0% | |
| AGAGGGTTAGGGTTCGTTTG+GGG | + | tig0031493:721-740 | None:intergenic | 50.0% | |
| GAGAGGGTTAGGGTTCGTTT+GGG | + | tig0031493:722-741 | None:intergenic | 50.0% | |
| AGAGAGGGTTAGGGTTCGTT+TGG | + | tig0031493:723-742 | None:intergenic | 50.0% | |
| GTTCCAGAACTCCCTCAGAT+TGG | + | tig0031493:1724-1743 | None:intergenic | 50.0% | |
| CTTCAGCTTCTCCTATTGGG+AGG | + | tig0031493:2419-2438 | None:intergenic | 50.0% | |
| ACCTTCTTGACAAGCCAGTC+TGG | + | tig0031493:2471-2490 | None:intergenic | 50.0% | |
| TGGAGACACTGTGTACCAGT+GGG | - | tig0031493:2500-2519 | Msa1446760:intron | 50.0% | |
| GAGGGTTAGGGTTCGTTTGG+GGG | + | tig0031493:720-739 | None:intergenic | 55.0% | |
| !! | GCCAGACTGGCTTGTCAAGA+AGG | - | tig0031493:2467-2486 | Msa1446760:intron | 55.0% |
| CTGGAGACACTGTGTACCAG+TGG | - | tig0031493:2499-2518 | Msa1446760:intron | 55.0% | |
| GTTCGTTTGGGGGTGGAAGG+AGG | + | tig0031493:710-729 | None:intergenic | 60.0% | |
| AGGGTTCGTTTGGGGGTGGA+AGG | + | tig0031493:713-732 | None:intergenic | 60.0% | |
| GGTTAGGGTTCGTTTGGGGG+TGG | + | tig0031493:717-736 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031493 | gene | 50 | 3057 | 50 | ID=Msa1446760;Name=Msa1446760 |
| tig0031493 | mRNA | 50 | 3057 | 50 | ID=Msa1446760-mRNA-1;Parent=Msa1446760;Name=Msa1446760-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.8|0.83|1|0|0.16|6|538|98 |
| tig0031493 | exon | 50 | 317 | 50 | ID=Msa1446760-mRNA-1:exon:15565;Parent=Msa1446760-mRNA-1 |
| tig0031493 | exon | 619 | 680 | 619 | ID=Msa1446760-mRNA-1:exon:15564;Parent=Msa1446760-mRNA-1 |
| tig0031493 | exon | 766 | 870 | 766 | ID=Msa1446760-mRNA-1:exon:15563;Parent=Msa1446760-mRNA-1 |
| tig0031493 | exon | 1930 | 2111 | 1930 | ID=Msa1446760-mRNA-1:exon:15562;Parent=Msa1446760-mRNA-1 |
| tig0031493 | exon | 2201 | 2229 | 2201 | ID=Msa1446760-mRNA-1:exon:15561;Parent=Msa1446760-mRNA-1 |
| tig0031493 | exon | 2869 | 3057 | 2869 | ID=Msa1446760-mRNA-1:exon:15560;Parent=Msa1446760-mRNA-1 |
| tig0031493 | CDS | 2869 | 3057 | 2869 | ID=Msa1446760-mRNA-1:cds;Parent=Msa1446760-mRNA-1 |
| tig0031493 | CDS | 2201 | 2229 | 2201 | ID=Msa1446760-mRNA-1:cds;Parent=Msa1446760-mRNA-1 |
| tig0031493 | CDS | 2033 | 2111 | 2033 | ID=Msa1446760-mRNA-1:cds;Parent=Msa1446760-mRNA-1 |
| tig0031493 | three_prime_UTR | 1930 | 2032 | 1930 | ID=Msa1446760-mRNA-1:three_prime_utr;Parent=Msa1446760-mRNA-1 |
| tig0031493 | three_prime_UTR | 766 | 870 | 766 | ID=Msa1446760-mRNA-1:three_prime_utr;Parent=Msa1446760-mRNA-1 |
| tig0031493 | three_prime_UTR | 619 | 680 | 619 | ID=Msa1446760-mRNA-1:three_prime_utr;Parent=Msa1446760-mRNA-1 |
| tig0031493 | three_prime_UTR | 50 | 317 | 50 | ID=Msa1446760-mRNA-1:three_prime_utr;Parent=Msa1446760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
