Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447810 | sp|P51139|MSK3_MEDSA | 87.013 | 77 | 5 | 1 | 15 | 91 | 237 | 308 | 1.12e-37 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447810 | A0A392NZV8 | 87.013 | 77 | 5 | 1 | 15 | 91 | 12 | 83 | 1.65e-37 | 137 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447810 | MtrunA17_Chr7g0270371 | 87.013 | 77 | 5 | 1 | 15 | 91 | 238 | 309 | 6.60e-39 | 138 |
| Msa1447810 | MtrunA17_Chr1g0193081 | 85.714 | 77 | 6 | 1 | 15 | 91 | 238 | 309 | 7.20e-38 | 135 |
| Msa1447810 | MtrunA17_Chr1g0194201 | 84.416 | 77 | 7 | 1 | 15 | 91 | 238 | 309 | 8.22e-38 | 135 |
| Msa1447810 | MtrunA17_Chr2g0277011 | 84.416 | 77 | 7 | 1 | 15 | 91 | 253 | 324 | 3.70e-37 | 134 |
| Msa1447810 | MtrunA17_Chr7g0246591 | 81.818 | 77 | 9 | 1 | 15 | 91 | 304 | 375 | 7.82e-37 | 133 |
| Msa1447810 | MtrunA17_Chr8g0350311 | 80.519 | 77 | 10 | 1 | 15 | 91 | 302 | 373 | 1.00e-35 | 130 |
| Msa1447810 | MtrunA17_Chr2g0320011 | 80.519 | 77 | 10 | 1 | 15 | 91 | 251 | 322 | 2.25e-35 | 129 |
| Msa1447810 | MtrunA17_Chr2g0284091 | 75.325 | 77 | 14 | 1 | 15 | 91 | 203 | 274 | 4.62e-34 | 124 |
| Msa1447810 | MtrunA17_Chr4g0030241 | 38.750 | 80 | 44 | 1 | 14 | 93 | 63 | 137 | 6.82e-14 | 67.0 |
| Msa1447810 | MtrunA17_Chr7g0273601 | 40.000 | 95 | 46 | 3 | 6 | 94 | 261 | 350 | 1.51e-13 | 68.6 |
| Msa1447810 | MtrunA17_Chr4g0051261 | 40.299 | 67 | 35 | 1 | 14 | 80 | 165 | 226 | 5.75e-13 | 66.2 |
| Msa1447810 | MtrunA17_Chr2g0293491 | 40.299 | 67 | 35 | 1 | 14 | 80 | 165 | 226 | 5.86e-13 | 66.2 |
| Msa1447810 | MtrunA17_Chr4g0030231 | 43.478 | 69 | 34 | 1 | 14 | 82 | 202 | 265 | 6.40e-13 | 66.6 |
| Msa1447810 | MtrunA17_Chr1g0191221 | 41.379 | 87 | 40 | 3 | 14 | 94 | 284 | 365 | 7.02e-13 | 66.6 |
| Msa1447810 | MtrunA17_Chr4g0045841 | 38.667 | 75 | 41 | 1 | 14 | 88 | 217 | 286 | 7.42e-13 | 66.6 |
| Msa1447810 | MtrunA17_Chr5g0396361 | 34.259 | 108 | 65 | 2 | 14 | 121 | 302 | 403 | 8.10e-13 | 66.6 |
| Msa1447810 | MtrunA17_Chr4g0002001 | 42.647 | 68 | 34 | 1 | 14 | 81 | 182 | 244 | 1.25e-12 | 65.5 |
| Msa1447810 | MtrunA17_Chr8g0348481 | 46.875 | 64 | 29 | 1 | 14 | 77 | 199 | 257 | 1.30e-12 | 65.9 |
| Msa1447810 | MtrunA17_Chr7g0248461 | 46.875 | 64 | 29 | 1 | 14 | 77 | 200 | 258 | 1.34e-12 | 65.9 |
| Msa1447810 | MtrunA17_Chr8g0378831 | 46.875 | 64 | 29 | 1 | 14 | 77 | 195 | 253 | 2.75e-12 | 64.7 |
| Msa1447810 | MtrunA17_Chr8g0385971 | 37.778 | 90 | 45 | 3 | 14 | 97 | 252 | 336 | 2.78e-12 | 65.1 |
| Msa1447810 | MtrunA17_Chr4g0066691 | 42.857 | 70 | 35 | 1 | 14 | 83 | 266 | 330 | 2.80e-12 | 65.1 |
| Msa1447810 | MtrunA17_Chr8g0387401 | 43.750 | 64 | 31 | 1 | 14 | 77 | 214 | 272 | 4.00e-12 | 64.3 |
| Msa1447810 | MtrunA17_Chr8g0377071 | 45.312 | 64 | 30 | 1 | 14 | 77 | 546 | 604 | 4.12e-12 | 64.7 |
| Msa1447810 | MtrunA17_Chr4g0030151 | 43.077 | 65 | 32 | 1 | 14 | 78 | 201 | 260 | 5.56e-12 | 63.9 |
| Msa1447810 | MtrunA17_Chr3g0122781 | 45.312 | 64 | 30 | 1 | 14 | 77 | 577 | 635 | 8.99e-12 | 63.5 |
| Msa1447810 | MtrunA17_Chr2g0286421 | 41.429 | 70 | 36 | 1 | 14 | 83 | 264 | 328 | 1.03e-11 | 63.2 |
| Msa1447810 | MtrunA17_Chr1g0201571 | 41.791 | 67 | 34 | 1 | 14 | 80 | 288 | 349 | 1.38e-11 | 63.2 |
| Msa1447810 | MtrunA17_Chr8g0358921 | 44.776 | 67 | 32 | 1 | 14 | 80 | 213 | 274 | 1.79e-11 | 62.4 |
| Msa1447810 | MtrunA17_Chr5g0397261 | 42.188 | 64 | 32 | 1 | 14 | 77 | 203 | 261 | 2.27e-11 | 62.0 |
| Msa1447810 | MtrunA17_Chr8g0359091 | 47.143 | 70 | 31 | 2 | 14 | 82 | 192 | 256 | 2.64e-11 | 62.0 |
| Msa1447810 | MtrunA17_Chr3g0131861 | 39.080 | 87 | 42 | 3 | 14 | 94 | 259 | 340 | 2.69e-11 | 62.0 |
| Msa1447810 | MtrunA17_Chr8g0383451 | 37.500 | 72 | 40 | 1 | 14 | 85 | 160 | 226 | 2.84e-11 | 62.0 |
| Msa1447810 | MtrunA17_Chr2g0317501 | 40.299 | 67 | 35 | 1 | 14 | 80 | 296 | 357 | 6.27e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447810 | AT5G14640.1 | 87.013 | 77 | 5 | 1 | 15 | 91 | 237 | 308 | 1.89e-38 | 137 |
| Msa1447810 | AT5G14640.2 | 87.013 | 77 | 5 | 1 | 15 | 91 | 237 | 308 | 1.89e-38 | 137 |
| Msa1447810 | AT1G09840.11 | 83.117 | 77 | 8 | 1 | 15 | 91 | 119 | 190 | 9.68e-38 | 132 |
| Msa1447810 | AT3G05840.2 | 84.416 | 77 | 7 | 1 | 15 | 91 | 236 | 307 | 1.64e-37 | 134 |
| Msa1447810 | AT3G05840.1 | 84.416 | 77 | 7 | 1 | 15 | 91 | 236 | 307 | 1.64e-37 | 134 |
| Msa1447810 | AT5G26751.1 | 84.416 | 77 | 7 | 1 | 15 | 91 | 232 | 303 | 1.97e-37 | 134 |
| Msa1447810 | AT1G57870.1 | 84.416 | 77 | 7 | 1 | 15 | 91 | 245 | 316 | 4.29e-37 | 134 |
| Msa1447810 | AT1G57870.4 | 84.416 | 77 | 7 | 1 | 15 | 91 | 245 | 316 | 4.29e-37 | 134 |
| Msa1447810 | AT1G57870.2 | 84.416 | 77 | 7 | 1 | 15 | 91 | 245 | 316 | 4.29e-37 | 134 |
| Msa1447810 | AT1G09840.3 | 83.117 | 77 | 8 | 1 | 15 | 91 | 246 | 317 | 7.11e-37 | 133 |
| Msa1447810 | AT1G09840.7 | 83.117 | 77 | 8 | 1 | 15 | 91 | 246 | 317 | 7.11e-37 | 133 |
| Msa1447810 | AT1G09840.10 | 83.117 | 77 | 8 | 1 | 15 | 91 | 246 | 317 | 7.11e-37 | 133 |
| Msa1447810 | AT1G09840.6 | 83.117 | 77 | 8 | 1 | 15 | 91 | 246 | 317 | 7.11e-37 | 133 |
| Msa1447810 | AT1G09840.4 | 83.117 | 77 | 8 | 1 | 15 | 91 | 246 | 317 | 7.11e-37 | 133 |
| Msa1447810 | AT1G09840.1 | 83.117 | 77 | 8 | 1 | 15 | 91 | 246 | 317 | 7.11e-37 | 133 |
| Msa1447810 | AT1G09840.9 | 83.117 | 77 | 8 | 1 | 15 | 91 | 246 | 317 | 7.11e-37 | 133 |
| Msa1447810 | AT1G09840.5 | 83.117 | 77 | 8 | 1 | 15 | 91 | 246 | 317 | 7.11e-37 | 133 |
| Msa1447810 | AT1G09840.8 | 83.117 | 77 | 8 | 1 | 15 | 91 | 246 | 317 | 7.11e-37 | 133 |
| Msa1447810 | AT1G09840.2 | 83.117 | 77 | 8 | 1 | 15 | 91 | 246 | 317 | 7.11e-37 | 133 |
| Msa1447810 | AT1G57870.3 | 84.416 | 77 | 7 | 1 | 15 | 91 | 245 | 316 | 7.16e-37 | 134 |
| Msa1447810 | AT4G00720.1 | 77.922 | 77 | 12 | 1 | 15 | 91 | 301 | 372 | 3.30e-35 | 129 |
| Msa1447810 | AT1G06390.2 | 79.221 | 77 | 11 | 1 | 15 | 91 | 233 | 304 | 6.00e-35 | 128 |
| Msa1447810 | AT1G06390.1 | 79.221 | 77 | 11 | 1 | 15 | 91 | 233 | 304 | 6.00e-35 | 128 |
| Msa1447810 | AT2G30980.1 | 79.221 | 77 | 11 | 1 | 15 | 91 | 235 | 306 | 6.09e-35 | 128 |
| Msa1447810 | AT4G18710.1 | 77.922 | 77 | 12 | 1 | 15 | 91 | 203 | 274 | 1.36e-34 | 126 |
| Msa1447810 | AT4G18710.2 | 75.325 | 77 | 14 | 1 | 15 | 91 | 197 | 268 | 2.06e-33 | 121 |
| Msa1447810 | AT3G61160.3 | 70.130 | 77 | 18 | 1 | 15 | 91 | 265 | 336 | 9.77e-31 | 115 |
| Msa1447810 | AT3G61160.6 | 70.130 | 77 | 18 | 1 | 15 | 91 | 272 | 343 | 1.21e-30 | 115 |
| Msa1447810 | AT3G61160.5 | 70.130 | 77 | 18 | 1 | 15 | 91 | 265 | 336 | 1.58e-30 | 115 |
| Msa1447810 | AT3G61160.1 | 70.130 | 77 | 18 | 1 | 15 | 91 | 265 | 336 | 3.40e-30 | 115 |
| Msa1447810 | AT3G61160.4 | 70.130 | 77 | 18 | 1 | 15 | 91 | 265 | 336 | 3.91e-30 | 115 |
| Msa1447810 | AT3G61160.2 | 70.130 | 77 | 18 | 1 | 15 | 91 | 272 | 343 | 4.33e-30 | 115 |
| Msa1447810 | AT5G63370.5 | 49.231 | 65 | 28 | 1 | 14 | 78 | 463 | 522 | 1.27e-14 | 72.4 |
| Msa1447810 | AT5G63370.10 | 49.231 | 65 | 28 | 1 | 14 | 78 | 463 | 522 | 1.27e-14 | 72.4 |
| Msa1447810 | AT5G63370.7 | 49.231 | 65 | 28 | 1 | 14 | 78 | 463 | 522 | 1.41e-14 | 72.0 |
| Msa1447810 | AT5G63370.8 | 49.231 | 65 | 28 | 1 | 14 | 78 | 463 | 522 | 1.41e-14 | 72.0 |
| Msa1447810 | AT5G63370.4 | 49.231 | 65 | 28 | 1 | 14 | 78 | 463 | 522 | 1.41e-14 | 72.0 |
| Msa1447810 | AT5G63370.6 | 49.231 | 65 | 28 | 1 | 14 | 78 | 463 | 522 | 1.41e-14 | 72.0 |
| Msa1447810 | AT5G63370.1 | 49.231 | 65 | 28 | 1 | 14 | 78 | 463 | 522 | 1.41e-14 | 72.0 |
| Msa1447810 | AT5G63370.9 | 49.231 | 65 | 28 | 1 | 14 | 78 | 329 | 388 | 1.60e-14 | 71.6 |
| Msa1447810 | AT5G63370.2 | 49.231 | 65 | 28 | 1 | 14 | 78 | 329 | 388 | 1.77e-14 | 71.6 |
| Msa1447810 | AT5G63370.3 | 49.231 | 65 | 28 | 1 | 14 | 78 | 329 | 388 | 1.77e-14 | 71.6 |
| Msa1447810 | AT3G48750.1 | 37.805 | 82 | 44 | 2 | 14 | 93 | 165 | 241 | 4.97e-14 | 69.7 |
| Msa1447810 | AT2G46070.2 | 50.000 | 64 | 27 | 1 | 14 | 77 | 203 | 261 | 5.59e-14 | 69.7 |
| Msa1447810 | AT2G46070.1 | 50.000 | 64 | 27 | 1 | 14 | 77 | 203 | 261 | 7.64e-14 | 69.7 |
| Msa1447810 | AT2G46070.3 | 50.000 | 64 | 27 | 1 | 14 | 77 | 237 | 295 | 8.40e-14 | 69.7 |
| Msa1447810 | AT2G38620.4 | 42.647 | 68 | 34 | 1 | 14 | 81 | 120 | 182 | 1.39e-13 | 67.8 |
| Msa1447810 | AT3G59790.1 | 39.726 | 73 | 39 | 1 | 14 | 86 | 222 | 289 | 1.66e-13 | 68.9 |
| Msa1447810 | AT2G38620.2 | 42.647 | 68 | 34 | 1 | 14 | 81 | 182 | 244 | 2.37e-13 | 67.8 |
| Msa1447810 | AT1G01560.3 | 46.875 | 64 | 29 | 1 | 14 | 77 | 202 | 260 | 1.72e-12 | 65.5 |
| Msa1447810 | AT3G54180.1 | 41.176 | 68 | 35 | 1 | 14 | 81 | 180 | 242 | 1.95e-12 | 65.5 |
| Msa1447810 | AT1G01560.2 | 46.875 | 64 | 29 | 1 | 14 | 77 | 202 | 260 | 2.18e-12 | 65.5 |
| Msa1447810 | AT1G67580.1 | 45.312 | 64 | 30 | 1 | 14 | 77 | 567 | 625 | 2.79e-12 | 65.5 |
| Msa1447810 | AT1G67580.2 | 45.312 | 64 | 30 | 1 | 14 | 77 | 567 | 625 | 2.79e-12 | 65.5 |
| Msa1447810 | AT4G10010.1 | 46.154 | 65 | 30 | 1 | 14 | 78 | 138 | 197 | 3.01e-12 | 65.1 |
| Msa1447810 | AT4G10010.2 | 46.154 | 65 | 30 | 1 | 14 | 78 | 318 | 377 | 3.29e-12 | 65.1 |
| Msa1447810 | AT4G01370.1 | 46.875 | 64 | 29 | 1 | 14 | 77 | 205 | 263 | 5.51e-12 | 64.3 |
| Msa1447810 | AT1G54610.1 | 44.615 | 65 | 31 | 1 | 14 | 78 | 280 | 339 | 7.65e-12 | 64.3 |
| Msa1447810 | AT1G54610.3 | 44.615 | 65 | 31 | 1 | 14 | 78 | 280 | 339 | 7.65e-12 | 64.3 |
| Msa1447810 | AT1G54610.2 | 44.615 | 65 | 31 | 1 | 14 | 78 | 280 | 339 | 7.65e-12 | 64.3 |
| Msa1447810 | AT3G45640.1 | 40.580 | 69 | 36 | 1 | 14 | 82 | 200 | 263 | 8.50e-12 | 63.9 |
| Msa1447810 | AT1G57700.1 | 40.299 | 67 | 35 | 1 | 14 | 80 | 308 | 369 | 9.36e-12 | 63.9 |
| Msa1447810 | AT1G09600.1 | 37.037 | 81 | 46 | 1 | 14 | 94 | 325 | 400 | 1.01e-11 | 63.9 |
| Msa1447810 | AT4G11330.1 | 42.188 | 64 | 32 | 1 | 14 | 77 | 205 | 263 | 1.46e-11 | 63.2 |
| Msa1447810 | AT1G71530.1 | 41.791 | 67 | 34 | 1 | 14 | 80 | 309 | 370 | 1.52e-11 | 63.2 |
| Msa1447810 | AT1G71530.3 | 43.077 | 65 | 32 | 1 | 14 | 78 | 309 | 368 | 1.81e-11 | 62.8 |
| Msa1447810 | AT1G71530.2 | 43.077 | 65 | 32 | 1 | 14 | 78 | 309 | 368 | 1.84e-11 | 62.8 |
| Msa1447810 | AT1G76540.1 | 42.188 | 64 | 32 | 1 | 17 | 80 | 186 | 244 | 2.02e-11 | 62.4 |
| Msa1447810 | AT1G33770.1 | 41.791 | 67 | 34 | 1 | 14 | 80 | 303 | 364 | 2.33e-11 | 62.8 |
| Msa1447810 | AT3G01085.3 | 39.189 | 74 | 40 | 1 | 7 | 80 | 270 | 338 | 3.27e-11 | 62.4 |
| Msa1447810 | AT1G20930.1 | 42.188 | 64 | 32 | 1 | 17 | 80 | 188 | 246 | 3.60e-11 | 61.6 |
| Msa1447810 | AT3G01085.1 | 39.189 | 74 | 40 | 1 | 7 | 80 | 270 | 338 | 3.66e-11 | 62.0 |
| Msa1447810 | AT3G01085.2 | 39.189 | 74 | 40 | 1 | 7 | 80 | 270 | 338 | 3.66e-11 | 62.0 |
| Msa1447810 | AT1G18670.2 | 41.791 | 67 | 34 | 1 | 14 | 80 | 294 | 355 | 4.65e-11 | 62.0 |
| Msa1447810 | AT1G18670.3 | 43.750 | 64 | 31 | 1 | 14 | 77 | 294 | 352 | 4.70e-11 | 62.0 |
| Msa1447810 | AT1G18670.1 | 41.791 | 67 | 34 | 1 | 14 | 80 | 294 | 355 | 4.73e-11 | 62.0 |
| Msa1447810 | AT2G43790.1 | 41.538 | 65 | 33 | 1 | 14 | 78 | 225 | 284 | 5.28e-11 | 61.6 |
| Msa1447810 | AT1G53050.2 | 36.782 | 87 | 44 | 3 | 14 | 94 | 296 | 377 | 5.37e-11 | 61.6 |
| Msa1447810 | AT1G53050.1 | 36.782 | 87 | 44 | 3 | 14 | 94 | 296 | 377 | 5.37e-11 | 61.6 |
Find 43 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATCTTACATTTGTTTCT+AGG | 0.116231 | tig0031943:-36689 | Msa1447810:CDS |
| ATACACCTTTAGACCGTTTA+AGG | 0.147896 | tig0031943:-35313 | Msa1447810:intron |
| CACTTGATTTCTTCCCTTGT+TGG | 0.206056 | tig0031943:+36262 | Msa1447810:intergenic |
| TTTAAAGTTCAGGCAGTTAT+TGG | 0.206518 | tig0031943:-35035 | Msa1447810:CDS |
| AATTTAAACTCTGTATAATT+AGG | 0.220898 | tig0031943:+36232 | Msa1447810:intergenic |
| ACTTGATTTCTTCCCTTGTT+GGG | 0.311805 | tig0031943:+36263 | Msa1447810:intergenic |
| TGCTCAGTTGGTTGCGTACT+TGG | 0.314908 | tig0031943:-36606 | Msa1447810:CDS |
| AGATAAACAATGTGCTCATT+TGG | 0.319034 | tig0031943:-35217 | Msa1447810:CDS |
| GCTTGGAGTTTAACCTTAAA+CGG | 0.370274 | tig0031943:+35300 | Msa1447810:intergenic |
| TGAGATTTACTCTCCTTCTA+AGG | 0.373862 | tig0031943:-34928 | Msa1447810:intron |
| ATTGATACTGAGAAGATTGT+TGG | 0.390696 | tig0031943:-34792 | Msa1447810:CDS |
| AAACAAATGTAAGATATGTT+TGG | 0.394876 | tig0031943:+36694 | Msa1447810:intergenic |
| CTTTGTATGATGGTTCCTAT+AGG | 0.404739 | tig0031943:-35004 | Msa1447810:CDS |
| CTTTGGAAGTTCTAATGTCT+TGG | 0.417717 | tig0031943:-36817 | Msa1447810:intron |
| ATGGTTCCTATAGGGTGATA+AGG | 0.433018 | tig0031943:-34995 | Msa1447810:CDS |
| GGACCCCATGCTTTGTATGA+TGG | 0.435370 | tig0031943:-35014 | Msa1447810:CDS |
| ACAAACCCTTATCACCCTAT+AGG | 0.444255 | tig0031943:+34989 | Msa1447810:intergenic |
| ATACACAGAAGCTAGTTAAC+TGG | 0.448429 | tig0031943:+36568 | Msa1447810:intergenic |
| TGGTTCCTATAGGGTGATAA+GGG | 0.460025 | tig0031943:-34994 | Msa1447810:CDS |
| CAACTGAAGATATGCGACTT+TGG | 0.471231 | tig0031943:-36834 | Msa1447810:five_prime_UTR |
| AGAGCTCCTGAGCTTATATT+CGG | 0.474562 | tig0031943:-36660 | Msa1447810:CDS |
| TCATTTGGTTGATGTAGCTA+AGG | 0.482770 | tig0031943:-35202 | Msa1447810:intron |
| ACCATTGACATCTGCTCAGT+TGG | 0.489208 | tig0031943:-36618 | Msa1447810:CDS |
| TTTGTATGATGGTTCCTATA+GGG | 0.492577 | tig0031943:-35003 | Msa1447810:CDS |
| CTTGATTTCTTCCCTTGTTG+GGG | 0.500080 | tig0031943:+36264 | Msa1447810:intergenic |
| CAAACTTGTGGAAATTATCA+AGG | 0.511188 | tig0031943:-36450 | Msa1447810:intron |
| AGGAACCATCATACAAAGCA+TGG | 0.519567 | tig0031943:+35009 | Msa1447810:intergenic |
| GACTGTTTCACTTAATGATG+AGG | 0.526623 | tig0031943:-34817 | Msa1447810:CDS |
| CATCAGTTACATCAGATGCT+TGG | 0.530953 | tig0031943:+35283 | Msa1447810:intergenic |
| TACTGAGAAGATTGTTGGCT+CGG | 0.541038 | tig0031943:-34787 | Msa1447810:CDS |
| GGAACCATCATACAAAGCAT+GGG | 0.561104 | tig0031943:+35010 | Msa1447810:intergenic |
| TGAGCAGATGTCAATGGTTG+TGG | 0.571517 | tig0031943:+36623 | Msa1447810:intergenic |
| ACCAACTGAGCAGATGTCAA+TGG | 0.572722 | tig0031943:+36617 | Msa1447810:intergenic |
| CCACTGTTTCCTAGTGAGAG+TGG | 0.575434 | tig0031943:-36479 | Msa1447810:CDS |
| GTCGCATATCTTCAGTTGGT+GGG | 0.578193 | tig0031943:+36839 | Msa1447810:intergenic |
| TTGTCTACTCCACTCTCACT+AGG | 0.578433 | tig0031943:+36470 | Msa1447810:intergenic |
| CAAAGTCGCATATCTTCAGT+TGG | 0.580954 | tig0031943:+36835 | Msa1447810:intergenic |
| GTTGCACCGAATATAAGCTC+AGG | 0.582148 | tig0031943:+36654 | Msa1447810:intergenic |
| GGTTGATGCTTCGCAGACTG+AGG | 0.585844 | tig0031943:-34766 | Msa1447810:CDS |
| GAGTGGAGTAGACAAACTTG+TGG | 0.646343 | tig0031943:-36462 | Msa1447810:CDS |
| AGTCGCATATCTTCAGTTGG+TGG | 0.661802 | tig0031943:+36838 | Msa1447800:intergenic |
| CCACTCTCACTAGGAAACAG+TGG | 0.673051 | tig0031943:+36479 | Msa1447800:intergenic |
| GAACCATCATACAAAGCATG+GGG | 0.696724 | tig0031943:+35011 | Msa1447800:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAACTCTGTATAATT+AGG | + | tig0031943:35392-35411 | Msa1447810:intergenic | 15.0% |
| !! | ATAAGAAAAATATTACATGA+TGG | - | tig0031943:35857-35876 | Msa1447810:intron | 15.0% |
| !! | TAAGAAAAATATTACATGAT+GGG | - | tig0031943:35858-35877 | Msa1447810:intron | 15.0% |
| !! | TTTGAAAAAAAAAACTTTGT+CGG | + | tig0031943:35986-36005 | Msa1447810:intergenic | 15.0% |
| !!! | ATTTTCTTTGAAAAAGAATA+TGG | - | tig0031943:36503-36522 | Msa1447810:intron | 15.0% |
| !!! | TTTTCTTTGAAAAAGAATAT+GGG | - | tig0031943:36504-36523 | Msa1447810:intron | 15.0% |
| !! | AATTTAAACTCTGTATAATT+AGG | + | tig0031943:35392-35411 | Msa1447810:intergenic | 15.0% |
| !! | ATAAGAAAAATATTACATGA+TGG | - | tig0031943:35857-35876 | Msa1447810:intron | 15.0% |
| !! | TAAGAAAAATATTACATGAT+GGG | - | tig0031943:35858-35877 | Msa1447810:intron | 15.0% |
| !! | TTTGAAAAAAAAAACTTTGT+CGG | + | tig0031943:35986-36005 | Msa1447810:intergenic | 15.0% |
| !!! | ATTTTCTTTGAAAAAGAATA+TGG | - | tig0031943:36503-36522 | Msa1447810:intron | 15.0% |
| !!! | TTTTCTTTGAAAAAGAATAT+GGG | - | tig0031943:36504-36523 | Msa1447810:intron | 15.0% |
| !!! | ATAGCTATCTGAATTTTATA+AGG | - | tig0031943:34868-34887 | Msa1447810:intron | 20.0% |
| !!! | TAAATGCTATATGATTTTAC+AGG | - | tig0031943:34893-34912 | Msa1447810:intron | 20.0% |
| !!! | TATATGATTTTACAGGTTAA+AGG | - | tig0031943:34900-34919 | Msa1447810:intron | 20.0% |
| !! | AAACAAATGTAAGATATGTT+TGG | + | tig0031943:34930-34949 | Msa1447810:intergenic | 20.0% |
| !! | TTTGAATGAATTTAATGAGT+AGG | - | tig0031943:35678-35697 | Msa1447810:intron | 20.0% |
| !!! | GCACATGTTTATATTTTATT+TGG | - | tig0031943:35815-35834 | Msa1447810:intron | 20.0% |
| !! | AAGAAAAATATTACATGATG+GGG | - | tig0031943:35859-35878 | Msa1447810:intron | 20.0% |
| !! | AGTTCAAATTCAATCAAATT+TGG | + | tig0031943:36056-36075 | Msa1447810:intergenic | 20.0% |
| !! | TTGAACTTGAATAATTAGTT+TGG | - | tig0031943:36069-36088 | Msa1447810:intron | 20.0% |
| !! | AAATTCATAAACTCAAATCA+AGG | + | tig0031943:36247-36266 | Msa1447810:intergenic | 20.0% |
| !!! | GAATTTTACTATATGTTACA+TGG | - | tig0031943:36261-36280 | Msa1447810:CDS | 20.0% |
| !!! | TTTAATTTATCCATCTCATT+AGG | + | tig0031943:36550-36569 | Msa1447810:intergenic | 20.0% |
| !! | TAATGAGATGGATAAATTAA+AGG | - | tig0031943:36549-36568 | Msa1447810:intron | 20.0% |
| !! | AATGAGATGGATAAATTAAA+GGG | - | tig0031943:36550-36569 | Msa1447810:intron | 20.0% |
| !!! | TATTTGTTTTGAATTGTTCA+AGG | - | tig0031943:36741-36760 | Msa1447810:intron | 20.0% |
| !!! | ATAGCTATCTGAATTTTATA+AGG | - | tig0031943:34868-34887 | Msa1447810:intron | 20.0% |
| !!! | TAAATGCTATATGATTTTAC+AGG | - | tig0031943:34893-34912 | Msa1447810:intron | 20.0% |
| !!! | TATATGATTTTACAGGTTAA+AGG | - | tig0031943:34900-34919 | Msa1447810:intron | 20.0% |
| !! | AAACAAATGTAAGATATGTT+TGG | + | tig0031943:34930-34949 | Msa1447810:intergenic | 20.0% |
| !! | TTTGAATGAATTTAATGAGT+AGG | - | tig0031943:35678-35697 | Msa1447810:intron | 20.0% |
| !!! | GCACATGTTTATATTTTATT+TGG | - | tig0031943:35815-35834 | Msa1447810:intron | 20.0% |
| !! | AAGAAAAATATTACATGATG+GGG | - | tig0031943:35859-35878 | Msa1447810:intron | 20.0% |
| !! | AGTTCAAATTCAATCAAATT+TGG | + | tig0031943:36056-36075 | Msa1447810:intergenic | 20.0% |
| !! | TTGAACTTGAATAATTAGTT+TGG | - | tig0031943:36069-36088 | Msa1447810:intron | 20.0% |
| !! | AAATTCATAAACTCAAATCA+AGG | + | tig0031943:36247-36266 | Msa1447810:intergenic | 20.0% |
| !!! | GAATTTTACTATATGTTACA+TGG | - | tig0031943:36261-36280 | Msa1447810:CDS | 20.0% |
| !!! | TTTAATTTATCCATCTCATT+AGG | + | tig0031943:36550-36569 | Msa1447810:intergenic | 20.0% |
| !! | TAATGAGATGGATAAATTAA+AGG | - | tig0031943:36549-36568 | Msa1447810:intron | 20.0% |
| !! | AATGAGATGGATAAATTAAA+GGG | - | tig0031943:36550-36569 | Msa1447810:intron | 20.0% |
| !!! | TATTTGTTTTGAATTGTTCA+AGG | - | tig0031943:36741-36760 | Msa1447810:intron | 20.0% |
| !! | CATATCTTACATTTGTTTCT+AGG | - | tig0031943:34932-34951 | Msa1447810:CDS | 25.0% |
| ! | AAACGAAATGAAAAGATGAA+AGG | + | tig0031943:35275-35294 | Msa1447810:intergenic | 25.0% |
| ! | AAATCAACTTTATGTCAGTT+GGG | + | tig0031943:35708-35727 | Msa1447810:intergenic | 25.0% |
| ! | ATATCATAAGTTATGTACCA+TGG | + | tig0031943:36145-36164 | Msa1447810:intergenic | 25.0% |
| ! | TGGTACATAACTTATGATAT+TGG | - | tig0031943:36145-36164 | Msa1447810:intron | 25.0% |
| ! | ATCACAATATAGTTAACACA+TGG | + | tig0031943:36202-36221 | Msa1447810:intergenic | 25.0% |
| ! | ATAATTAGAGTTGAGTTTAC+AGG | - | tig0031943:36220-36239 | Msa1447810:intron | 25.0% |
| !! | TGTAGAATGTAGAATTTGTT+TGG | - | tig0031943:36467-36486 | Msa1447810:CDS | 25.0% |
| ! | ATGAGATGGATAAATTAAAG+GGG | - | tig0031943:36551-36570 | Msa1447810:intron | 25.0% |
| !! | AATTTTTACACCTCATTTGT+TGG | - | tig0031943:36717-36736 | Msa1447810:intron | 25.0% |
| ! | AAACAAATAACCAACAAATG+AGG | + | tig0031943:36730-36749 | Msa1447810:intergenic | 25.0% |
| ! | TGGACCTAAATTTATCATTT+AGG | - | tig0031943:36777-36796 | Msa1447810:intron | 25.0% |
| ! | AACGCCTAAATGATAAATTT+AGG | + | tig0031943:36784-36803 | Msa1447810:intergenic | 25.0% |
| !! | CATATCTTACATTTGTTTCT+AGG | - | tig0031943:34932-34951 | Msa1447810:CDS | 25.0% |
| ! | AAACGAAATGAAAAGATGAA+AGG | + | tig0031943:35275-35294 | Msa1447810:intergenic | 25.0% |
| ! | AAATCAACTTTATGTCAGTT+GGG | + | tig0031943:35708-35727 | Msa1447810:intergenic | 25.0% |
| ! | ATATCATAAGTTATGTACCA+TGG | + | tig0031943:36145-36164 | Msa1447810:intergenic | 25.0% |
| ! | TGGTACATAACTTATGATAT+TGG | - | tig0031943:36145-36164 | Msa1447810:intron | 25.0% |
| ! | ATCACAATATAGTTAACACA+TGG | + | tig0031943:36202-36221 | Msa1447810:intergenic | 25.0% |
| ! | ATAATTAGAGTTGAGTTTAC+AGG | - | tig0031943:36220-36239 | Msa1447810:intron | 25.0% |
| !! | TGTAGAATGTAGAATTTGTT+TGG | - | tig0031943:36467-36486 | Msa1447810:CDS | 25.0% |
| ! | ATGAGATGGATAAATTAAAG+GGG | - | tig0031943:36551-36570 | Msa1447810:intron | 25.0% |
| !! | AATTTTTACACCTCATTTGT+TGG | - | tig0031943:36717-36736 | Msa1447810:intron | 25.0% |
| ! | AAACAAATAACCAACAAATG+AGG | + | tig0031943:36730-36749 | Msa1447810:intergenic | 25.0% |
| ! | TGGACCTAAATTTATCATTT+AGG | - | tig0031943:36777-36796 | Msa1447810:intron | 25.0% |
| ! | AACGCCTAAATGATAAATTT+AGG | + | tig0031943:36784-36803 | Msa1447810:intergenic | 25.0% |
| AAACAAACGAAAGGATTTCA+AGG | + | tig0031943:34844-34863 | Msa1447810:intergenic | 30.0% | |
| CAAACTTGTGGAAATTATCA+AGG | - | tig0031943:35171-35190 | Msa1447810:intron | 30.0% | |
| ATATGTTCAAGATAGTAGCA+AGG | + | tig0031943:35239-35258 | Msa1447810:intergenic | 30.0% | |
| !! | CATGAATGAGATTTGATTTG+AGG | + | tig0031943:35416-35435 | Msa1447810:intergenic | 30.0% |
| CAAATCTCATTCATGACATA+AGG | - | tig0031943:35421-35440 | Msa1447810:intron | 30.0% | |
| ! | TGATTTCTTCATCTTTTGAG+TGG | - | tig0031943:35632-35651 | Msa1447810:intron | 30.0% |
| TTCATTCAAACTGAATGTGA+AGG | + | tig0031943:35668-35687 | Msa1447810:intergenic | 30.0% | |
| CAAATCAACTTTATGTCAGT+TGG | + | tig0031943:35709-35728 | Msa1447810:intergenic | 30.0% | |
| ! | CAACTGACATAAAGTTGATT+TGG | - | tig0031943:35707-35726 | Msa1447810:intron | 30.0% |
| TTAAGCTCTTAAGTCTTCAT+CGG | + | tig0031943:35931-35950 | Msa1447810:intergenic | 30.0% | |
| ACTTAAGAGCTTAAGGATAA+AGG | - | tig0031943:35937-35956 | Msa1447810:intron | 30.0% | |
| ! | TTTTCAAAACTCATTCCATG+AGG | - | tig0031943:35998-36017 | Msa1447810:intron | 30.0% |
| TTCAATCAAATTTGGCATGT+AGG | + | tig0031943:36048-36067 | Msa1447810:intergenic | 30.0% | |
| AAAATGAAAATAGGGAACCA+TGG | - | tig0031943:36125-36144 | Msa1447810:intron | 30.0% | |
| CAATATAGTTAACACATGGT+GGG | + | tig0031943:36198-36217 | Msa1447810:intergenic | 30.0% | |
| ACAATATAGTTAACACATGG+TGG | + | tig0031943:36199-36218 | Msa1447810:intergenic | 30.0% | |
| TTTAACCTTAAACGGTCTAA+AGG | + | tig0031943:36316-36335 | Msa1447810:intergenic | 30.0% | |
| AGATAAACAATGTGCTCATT+TGG | - | tig0031943:36404-36423 | Msa1447810:intron | 30.0% | |
| !!! | TGATGTAGCTAAGGTTTTTT+CGG | - | tig0031943:36428-36447 | Msa1447810:intron | 30.0% |
| AGGATGAAATCCAACATTAT+CGG | + | tig0031943:36530-36549 | Msa1447810:intergenic | 30.0% | |
| !!! | GAAGATGCTTTTTAAAGTTC+AGG | - | tig0031943:36576-36595 | Msa1447810:CDS | 30.0% |
| ! | TTTAAAGTTCAGGCAGTTAT+TGG | - | tig0031943:36586-36605 | Msa1447810:CDS | 30.0% |
| TTTGTATGATGGTTCCTATA+GGG | - | tig0031943:36618-36637 | Msa1447810:CDS | 30.0% | |
| GGTGTAAAAATTACCTTAGA+AGG | + | tig0031943:36709-36728 | Msa1447810:intergenic | 30.0% | |
| !! | TTCAAGGCTATGTTTTTCAA+TGG | - | tig0031943:36757-36776 | Msa1447810:intron | 30.0% |
| ATTGATACTGAGAAGATTGT+TGG | - | tig0031943:36829-36848 | Msa1447810:five_prime_UTR | 30.0% | |
| AAACAAACGAAAGGATTTCA+AGG | + | tig0031943:34844-34863 | Msa1447810:intergenic | 30.0% | |
| CAAACTTGTGGAAATTATCA+AGG | - | tig0031943:35171-35190 | Msa1447810:intron | 30.0% | |
| ATATGTTCAAGATAGTAGCA+AGG | + | tig0031943:35239-35258 | Msa1447810:intergenic | 30.0% | |
| !! | CATGAATGAGATTTGATTTG+AGG | + | tig0031943:35416-35435 | Msa1447810:intergenic | 30.0% |
| CAAATCTCATTCATGACATA+AGG | - | tig0031943:35421-35440 | Msa1447810:intron | 30.0% | |
| ! | TGATTTCTTCATCTTTTGAG+TGG | - | tig0031943:35632-35651 | Msa1447810:intron | 30.0% |
| TTCATTCAAACTGAATGTGA+AGG | + | tig0031943:35668-35687 | Msa1447810:intergenic | 30.0% | |
| CAAATCAACTTTATGTCAGT+TGG | + | tig0031943:35709-35728 | Msa1447810:intergenic | 30.0% | |
| ! | CAACTGACATAAAGTTGATT+TGG | - | tig0031943:35707-35726 | Msa1447810:intron | 30.0% |
| TTAAGCTCTTAAGTCTTCAT+CGG | + | tig0031943:35931-35950 | Msa1447810:intergenic | 30.0% | |
| ACTTAAGAGCTTAAGGATAA+AGG | - | tig0031943:35937-35956 | Msa1447810:intron | 30.0% | |
| ! | TTTTCAAAACTCATTCCATG+AGG | - | tig0031943:35998-36017 | Msa1447810:intron | 30.0% |
| TTCAATCAAATTTGGCATGT+AGG | + | tig0031943:36048-36067 | Msa1447810:intergenic | 30.0% | |
| AAAATGAAAATAGGGAACCA+TGG | - | tig0031943:36125-36144 | Msa1447810:intron | 30.0% | |
| CAATATAGTTAACACATGGT+GGG | + | tig0031943:36198-36217 | Msa1447810:intergenic | 30.0% | |
| ACAATATAGTTAACACATGG+TGG | + | tig0031943:36199-36218 | Msa1447810:intergenic | 30.0% | |
| TTTAACCTTAAACGGTCTAA+AGG | + | tig0031943:36316-36335 | Msa1447810:intergenic | 30.0% | |
| AGATAAACAATGTGCTCATT+TGG | - | tig0031943:36404-36423 | Msa1447810:intron | 30.0% | |
| !!! | TGATGTAGCTAAGGTTTTTT+CGG | - | tig0031943:36428-36447 | Msa1447810:intron | 30.0% |
| AGGATGAAATCCAACATTAT+CGG | + | tig0031943:36530-36549 | Msa1447810:intergenic | 30.0% | |
| !!! | GAAGATGCTTTTTAAAGTTC+AGG | - | tig0031943:36576-36595 | Msa1447810:CDS | 30.0% |
| ! | TTTAAAGTTCAGGCAGTTAT+TGG | - | tig0031943:36586-36605 | Msa1447810:CDS | 30.0% |
| TTTGTATGATGGTTCCTATA+GGG | - | tig0031943:36618-36637 | Msa1447810:CDS | 30.0% | |
| GGTGTAAAAATTACCTTAGA+AGG | + | tig0031943:36709-36728 | Msa1447810:intergenic | 30.0% | |
| !! | TTCAAGGCTATGTTTTTCAA+TGG | - | tig0031943:36757-36776 | Msa1447810:intron | 30.0% |
| ATTGATACTGAGAAGATTGT+TGG | - | tig0031943:36829-36848 | Msa1447810:five_prime_UTR | 30.0% | |
| ! | CTTTGGAAGTTCTAATGTCT+TGG | - | tig0031943:34804-34823 | Msa1447810:CDS | 35.0% |
| GCTATTGCAAAACAAACGAA+AGG | + | tig0031943:34853-34872 | Msa1447810:intergenic | 35.0% | |
| ATACACAGAAGCTAGTTAAC+TGG | + | tig0031943:35056-35075 | Msa1447810:intergenic | 35.0% | |
| AAGTGAACCACATGAAACTT+CGG | + | tig0031943:35323-35342 | Msa1447810:intergenic | 35.0% | |
| ACTTGATTTCTTCCCTTGTT+GGG | + | tig0031943:35361-35380 | Msa1447810:intergenic | 35.0% | |
| GTTTATGCAATGAATGAGCA+AGG | + | tig0031943:35490-35509 | Msa1447810:intergenic | 35.0% | |
| AAGTAGGCAATCTTCAAAGT+AGG | - | tig0031943:35895-35914 | Msa1447810:intron | 35.0% | |
| TAAGCTCTTAAGTCTTCATC+GGG | + | tig0031943:35930-35949 | Msa1447810:intergenic | 35.0% | |
| GATGAAGACTTAAGAGCTTA+AGG | - | tig0031943:35930-35949 | Msa1447810:intron | 35.0% | |
| ! | TTTTTGTTACCTAGACCTCA+TGG | + | tig0031943:36016-36035 | Msa1447810:intergenic | 35.0% |
| AGTTTGGTCAAGTTACGAAT+TGG | - | tig0031943:36085-36104 | Msa1447810:intron | 35.0% | |
| ATACACCTTTAGACCGTTTA+AGG | - | tig0031943:36308-36327 | Msa1447810:intron | 35.0% | |
| GCTTGGAGTTTAACCTTAAA+CGG | + | tig0031943:36324-36343 | Msa1447810:intergenic | 35.0% | |
| ! | TCATTTGGTTGATGTAGCTA+AGG | - | tig0031943:36419-36438 | Msa1447810:intron | 35.0% |
| TGGATTTCATCCTAATGAGA+TGG | - | tig0031943:36537-36556 | Msa1447810:intron | 35.0% | |
| CTTTGTATGATGGTTCCTAT+AGG | - | tig0031943:36617-36636 | Msa1447810:CDS | 35.0% | |
| TGAGATTTACTCTCCTTCTA+AGG | - | tig0031943:36693-36712 | Msa1447810:CDS | 35.0% | |
| GACTGTTTCACTTAATGATG+AGG | - | tig0031943:36804-36823 | Msa1447810:intron | 35.0% | |
| ! | CTTTGGAAGTTCTAATGTCT+TGG | - | tig0031943:34804-34823 | Msa1447810:CDS | 35.0% |
| GCTATTGCAAAACAAACGAA+AGG | + | tig0031943:34853-34872 | Msa1447810:intergenic | 35.0% | |
| ATACACAGAAGCTAGTTAAC+TGG | + | tig0031943:35056-35075 | Msa1447810:intergenic | 35.0% | |
| AAGTGAACCACATGAAACTT+CGG | + | tig0031943:35323-35342 | Msa1447810:intergenic | 35.0% | |
| ACTTGATTTCTTCCCTTGTT+GGG | + | tig0031943:35361-35380 | Msa1447810:intergenic | 35.0% | |
| GTTTATGCAATGAATGAGCA+AGG | + | tig0031943:35490-35509 | Msa1447810:intergenic | 35.0% | |
| AAGTAGGCAATCTTCAAAGT+AGG | - | tig0031943:35895-35914 | Msa1447810:intron | 35.0% | |
| TAAGCTCTTAAGTCTTCATC+GGG | + | tig0031943:35930-35949 | Msa1447810:intergenic | 35.0% | |
| GATGAAGACTTAAGAGCTTA+AGG | - | tig0031943:35930-35949 | Msa1447810:intron | 35.0% | |
| ! | TTTTTGTTACCTAGACCTCA+TGG | + | tig0031943:36016-36035 | Msa1447810:intergenic | 35.0% |
| AGTTTGGTCAAGTTACGAAT+TGG | - | tig0031943:36085-36104 | Msa1447810:intron | 35.0% | |
| ATACACCTTTAGACCGTTTA+AGG | - | tig0031943:36308-36327 | Msa1447810:intron | 35.0% | |
| GCTTGGAGTTTAACCTTAAA+CGG | + | tig0031943:36324-36343 | Msa1447810:intergenic | 35.0% | |
| ! | TCATTTGGTTGATGTAGCTA+AGG | - | tig0031943:36419-36438 | Msa1447810:intron | 35.0% |
| TGGATTTCATCCTAATGAGA+TGG | - | tig0031943:36537-36556 | Msa1447810:intron | 35.0% | |
| CTTTGTATGATGGTTCCTAT+AGG | - | tig0031943:36617-36636 | Msa1447810:CDS | 35.0% | |
| TGAGATTTACTCTCCTTCTA+AGG | - | tig0031943:36693-36712 | Msa1447810:CDS | 35.0% | |
| GACTGTTTCACTTAATGATG+AGG | - | tig0031943:36804-36823 | Msa1447810:intron | 35.0% | |
| CAAAGTCGCATATCTTCAGT+TGG | + | tig0031943:34789-34808 | Msa0170900:intergenic | 40.0% | |
| CAACTGAAGATATGCGACTT+TGG | - | tig0031943:34787-34806 | Msa1447810:CDS | 40.0% | |
| AGAGCTCCTGAGCTTATATT+CGG | - | tig0031943:34961-34980 | Msa1447810:CDS | 40.0% | |
| !! | GTACTTGGTGAACTTTTGCT+TGG | - | tig0031943:35030-35049 | Msa1447810:CDS | 40.0% |
| ! | AACTAGCTTCTGTGTATGCT+TGG | - | tig0031943:35059-35078 | Msa1447810:intron | 40.0% |
| GTTCATTCCGAAGTTTCATG+TGG | - | tig0031943:35313-35332 | Msa1447810:intron | 40.0% | |
| CTTGATTTCTTCCCTTGTTG+GGG | + | tig0031943:35360-35379 | Msa1447810:intergenic | 40.0% | |
| CACTTGATTTCTTCCCTTGT+TGG | + | tig0031943:35362-35381 | Msa1447810:intergenic | 40.0% | |
| GGGATCATAAATGCTGAAGT+AGG | - | tig0031943:35879-35898 | Msa1447810:intron | 40.0% | |
| AAACTCATTCCATGAGGTCT+AGG | - | tig0031943:36004-36023 | Msa1447810:intron | 40.0% | |
| CATCAGTTACATCAGATGCT+TGG | + | tig0031943:36341-36360 | Msa1447810:intergenic | 40.0% | |
| !!! | TGTTGCTTTTGACACTGACA+TGG | - | tig0031943:36371-36390 | Msa1447810:intron | 40.0% |
| !!! | GTTGCTTTTGACACTGACAT+GGG | - | tig0031943:36372-36391 | Msa1447810:intron | 40.0% |
| AGAATATGGGCCGATAATGT+TGG | - | tig0031943:36517-36536 | Msa1447810:intron | 40.0% | |
| GAACCATCATACAAAGCATG+GGG | + | tig0031943:36613-36632 | Msa1447810:intergenic | 40.0% | |
| GGAACCATCATACAAAGCAT+GGG | + | tig0031943:36614-36633 | Msa1447810:intergenic | 40.0% | |
| AGGAACCATCATACAAAGCA+TGG | + | tig0031943:36615-36634 | Msa1447810:intergenic | 40.0% | |
| ATGGTTCCTATAGGGTGATA+AGG | - | tig0031943:36626-36645 | Msa1447810:CDS | 40.0% | |
| TGGTTCCTATAGGGTGATAA+GGG | - | tig0031943:36627-36646 | Msa1447810:CDS | 40.0% | |
| ACAAACCCTTATCACCCTAT+AGG | + | tig0031943:36635-36654 | Msa1447810:intergenic | 40.0% | |
| ! | TACTGAGAAGATTGTTGGCT+CGG | - | tig0031943:36834-36853 | Msa1447810:five_prime_UTR | 40.0% |
| CAAAGTCGCATATCTTCAGT+TGG | + | tig0031943:34789-34808 | Msa1447810:intergenic | 40.0% | |
| CAACTGAAGATATGCGACTT+TGG | - | tig0031943:34787-34806 | Msa1447810:CDS | 40.0% | |
| AGAGCTCCTGAGCTTATATT+CGG | - | tig0031943:34961-34980 | Msa1447810:CDS | 40.0% | |
| !! | GTACTTGGTGAACTTTTGCT+TGG | - | tig0031943:35030-35049 | Msa1447810:CDS | 40.0% |
| ! | AACTAGCTTCTGTGTATGCT+TGG | - | tig0031943:35059-35078 | Msa1447810:intron | 40.0% |
| GTTCATTCCGAAGTTTCATG+TGG | - | tig0031943:35313-35332 | Msa1447810:intron | 40.0% | |
| CTTGATTTCTTCCCTTGTTG+GGG | + | tig0031943:35360-35379 | Msa1447810:intergenic | 40.0% | |
| CACTTGATTTCTTCCCTTGT+TGG | + | tig0031943:35362-35381 | Msa1447810:intergenic | 40.0% | |
| GGGATCATAAATGCTGAAGT+AGG | - | tig0031943:35879-35898 | Msa1447810:intron | 40.0% | |
| AAACTCATTCCATGAGGTCT+AGG | - | tig0031943:36004-36023 | Msa1447810:intron | 40.0% | |
| CATCAGTTACATCAGATGCT+TGG | + | tig0031943:36341-36360 | Msa1447810:intergenic | 40.0% | |
| !!! | TGTTGCTTTTGACACTGACA+TGG | - | tig0031943:36371-36390 | Msa1447810:intron | 40.0% |
| !!! | GTTGCTTTTGACACTGACAT+GGG | - | tig0031943:36372-36391 | Msa1447810:intron | 40.0% |
| AGAATATGGGCCGATAATGT+TGG | - | tig0031943:36517-36536 | Msa1447810:intron | 40.0% | |
| GAACCATCATACAAAGCATG+GGG | + | tig0031943:36613-36632 | Msa1447810:intergenic | 40.0% | |
| GGAACCATCATACAAAGCAT+GGG | + | tig0031943:36614-36633 | Msa1447810:intergenic | 40.0% | |
| AGGAACCATCATACAAAGCA+TGG | + | tig0031943:36615-36634 | Msa1447810:intergenic | 40.0% | |
| ATGGTTCCTATAGGGTGATA+AGG | - | tig0031943:36626-36645 | Msa1447810:CDS | 40.0% | |
| TGGTTCCTATAGGGTGATAA+GGG | - | tig0031943:36627-36646 | Msa1447810:CDS | 40.0% | |
| ACAAACCCTTATCACCCTAT+AGG | + | tig0031943:36635-36654 | Msa1447810:intergenic | 40.0% | |
| ! | TACTGAGAAGATTGTTGGCT+CGG | - | tig0031943:36834-36853 | Msa1447810:five_prime_UTR | 40.0% |
| GTCGCATATCTTCAGTTGGT+GGG | + | tig0031943:34785-34804 | Msa0170900:intergenic | 45.0% | |
| AGTCGCATATCTTCAGTTGG+TGG | + | tig0031943:34786-34805 | Msa0170900:intergenic | 45.0% | |
| GTTGCACCGAATATAAGCTC+AGG | + | tig0031943:34970-34989 | Msa1447810:intergenic | 45.0% | |
| TGAGCAGATGTCAATGGTTG+TGG | + | tig0031943:35001-35020 | Msa1447810:intergenic | 45.0% | |
| ACCATTGACATCTGCTCAGT+TGG | - | tig0031943:35003-35022 | Msa1447810:CDS | 45.0% | |
| ACCAACTGAGCAGATGTCAA+TGG | + | tig0031943:35007-35026 | Msa1447810:intergenic | 45.0% | |
| TTGTCTACTCCACTCTCACT+AGG | + | tig0031943:35154-35173 | Msa1447810:intergenic | 45.0% | |
| GAGTGGAGTAGACAAACTTG+TGG | - | tig0031943:35159-35178 | Msa1447810:intron | 45.0% | |
| GTTTCATGTGGTTCACTTGC+AGG | - | tig0031943:35325-35344 | Msa1447810:intron | 45.0% | |
| ! | GTGGTTCACTTGCAGGTTTT+AGG | - | tig0031943:35332-35351 | Msa1447810:intron | 45.0% |
| !!! | AGGTTTTAGGTACCCCAACA+AGG | - | tig0031943:35345-35364 | Msa1447810:intron | 45.0% |
| !!! | GGTTTTAGGTACCCCAACAA+GGG | - | tig0031943:35346-35365 | Msa1447810:intron | 45.0% |
| GTCGCATATCTTCAGTTGGT+GGG | + | tig0031943:34785-34804 | Msa1447810:intergenic | 45.0% | |
| AGTCGCATATCTTCAGTTGG+TGG | + | tig0031943:34786-34805 | Msa1447810:intergenic | 45.0% | |
| GTTGCACCGAATATAAGCTC+AGG | + | tig0031943:34970-34989 | Msa1447810:intergenic | 45.0% | |
| TGAGCAGATGTCAATGGTTG+TGG | + | tig0031943:35001-35020 | Msa1447810:intergenic | 45.0% | |
| ACCATTGACATCTGCTCAGT+TGG | - | tig0031943:35003-35022 | Msa1447810:CDS | 45.0% | |
| ACCAACTGAGCAGATGTCAA+TGG | + | tig0031943:35007-35026 | Msa1447810:intergenic | 45.0% | |
| TTGTCTACTCCACTCTCACT+AGG | + | tig0031943:35154-35173 | Msa1447810:intergenic | 45.0% | |
| GAGTGGAGTAGACAAACTTG+TGG | - | tig0031943:35159-35178 | Msa1447810:intron | 45.0% | |
| GTTTCATGTGGTTCACTTGC+AGG | - | tig0031943:35325-35344 | Msa1447810:intron | 45.0% | |
| ! | GTGGTTCACTTGCAGGTTTT+AGG | - | tig0031943:35332-35351 | Msa1447810:intron | 45.0% |
| !!! | AGGTTTTAGGTACCCCAACA+AGG | - | tig0031943:35345-35364 | Msa1447810:intron | 45.0% |
| !!! | GGTTTTAGGTACCCCAACAA+GGG | - | tig0031943:35346-35365 | Msa1447810:intron | 45.0% |
| !! | AAAAAAATAAAAATGAAAAT+AGG | - | tig0031943:36116-36135 | Msa1447810:intron | 5.0% |
| !! | AAAAAATAAAAATGAAAATA+GGG | - | tig0031943:36117-36136 | Msa1447810:intron | 5.0% |
| !! | AAAAAAATAAAAATGAAAAT+AGG | - | tig0031943:36116-36135 | Msa1447810:intron | 5.0% |
| !! | AAAAAATAAAAATGAAAATA+GGG | - | tig0031943:36117-36136 | Msa1447810:intron | 5.0% |
| TGCTCAGTTGGTTGCGTACT+TGG | - | tig0031943:35015-35034 | Msa1447810:CDS | 50.0% | |
| CCACTCTCACTAGGAAACAG+TGG | + | tig0031943:35145-35164 | Msa1447810:intergenic | 50.0% | |
| CCACTGTTTCCTAGTGAGAG+TGG | - | tig0031943:35142-35161 | Msa1447810:intron | 50.0% | |
| CTTAAGTCTTCATCGGGTGG+AGG | + | tig0031943:35924-35943 | Msa1447810:intergenic | 50.0% | |
| GCTCTTAAGTCTTCATCGGG+TGG | + | tig0031943:35927-35946 | Msa1447810:intergenic | 50.0% | |
| GGACCCCATGCTTTGTATGA+TGG | - | tig0031943:36607-36626 | Msa1447810:CDS | 50.0% | |
| TGCTCAGTTGGTTGCGTACT+TGG | - | tig0031943:35015-35034 | Msa1447810:CDS | 50.0% | |
| CCACTCTCACTAGGAAACAG+TGG | + | tig0031943:35145-35164 | Msa1447810:intergenic | 50.0% | |
| CCACTGTTTCCTAGTGAGAG+TGG | - | tig0031943:35142-35161 | Msa1447810:intron | 50.0% | |
| CTTAAGTCTTCATCGGGTGG+AGG | + | tig0031943:35924-35943 | Msa1447810:intergenic | 50.0% | |
| GCTCTTAAGTCTTCATCGGG+TGG | + | tig0031943:35927-35946 | Msa1447810:intergenic | 50.0% | |
| GGACCCCATGCTTTGTATGA+TGG | - | tig0031943:36607-36626 | Msa1447810:CDS | 50.0% | |
| ! | GGTTGATGCTTCGCAGACTG+AGG | - | tig0031943:36855-36874 | Msa1447810:five_prime_UTR | 55.0% |
| ! | GGTTGATGCTTCGCAGACTG+AGG | - | tig0031943:36855-36874 | Msa1447810:five_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031943 | gene | 34752 | 36891 | 34752 | ID=Msa1447810;Name=Msa1447810 |
| tig0031943 | mRNA | 34752 | 36891 | 34752 | ID=Msa1447810-mRNA-1;Parent=Msa1447810;Name=Msa1447810-mRNA-1;_AED=0.58;_eAED=0.58;_QI=66|0.16|0.14|0.57|0.83|0.85|7|0|209 |
| tig0031943 | exon | 34752 | 34844 | 34752 | ID=Msa1447810-mRNA-1:exon:16101;Parent=Msa1447810-mRNA-1 |
| tig0031943 | exon | 34929 | 35072 | 34929 | ID=Msa1447810-mRNA-1:exon:16100;Parent=Msa1447810-mRNA-1 |
| tig0031943 | exon | 35203 | 35323 | 35203 | ID=Msa1447810-mRNA-1:exon:16099;Parent=Msa1447810-mRNA-1 |
| tig0031943 | exon | 36241 | 36296 | 36241 | ID=Msa1447810-mRNA-1:exon:16098;Parent=Msa1447810-mRNA-1 |
| tig0031943 | exon | 36451 | 36501 | 36451 | ID=Msa1447810-mRNA-1:exon:16097;Parent=Msa1447810-mRNA-1 |
| tig0031943 | exon | 36572 | 36728 | 36572 | ID=Msa1447810-mRNA-1:exon:16096;Parent=Msa1447810-mRNA-1 |
| tig0031943 | exon | 36818 | 36891 | 36818 | ID=Msa1447810-mRNA-1:exon:16095;Parent=Msa1447810-mRNA-1 |
| tig0031943 | five_prime_UTR | 36826 | 36891 | 36826 | ID=Msa1447810-mRNA-1:five_prime_utr;Parent=Msa1447810-mRNA-1 |
| tig0031943 | CDS | 36818 | 36825 | 36818 | ID=Msa1447810-mRNA-1:cds;Parent=Msa1447810-mRNA-1 |
| tig0031943 | CDS | 36572 | 36728 | 36572 | ID=Msa1447810-mRNA-1:cds;Parent=Msa1447810-mRNA-1 |
| tig0031943 | CDS | 36451 | 36501 | 36451 | ID=Msa1447810-mRNA-1:cds;Parent=Msa1447810-mRNA-1 |
| tig0031943 | CDS | 36241 | 36296 | 36241 | ID=Msa1447810-mRNA-1:cds;Parent=Msa1447810-mRNA-1 |
| tig0031943 | CDS | 35203 | 35323 | 35203 | ID=Msa1447810-mRNA-1:cds;Parent=Msa1447810-mRNA-1 |
| tig0031943 | CDS | 34929 | 35072 | 34929 | ID=Msa1447810-mRNA-1:cds;Parent=Msa1447810-mRNA-1 |
| tig0031943 | CDS | 34752 | 34844 | 34752 | ID=Msa1447810-mRNA-1:cds;Parent=Msa1447810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
