AlfalfaGEDB | Msa1448900

M. sativa cultivar zhongmu-4 / Msa1448900

KEGG: K04730
GO: GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1448900	sp\|C0LGP4\|Y3475_ARATH	46.270	992	506	7	5	981	22	1001	0.0	859

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1448900	G7K5C7	76.714	992	210	2	1	988	25	999	0.0	1496

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1448900	MtrunA17_Chr6g0464171	69.098	987	300	2	2	983	37	1023	1358
Msa1448900	MtrunA17_Chr6g0464211	68.426	1004	305	4	2	1000	37	1033	1357
Msa1448900	MtrunA17_Chr2g0300201	69.675	986	294	2	2	982	37	1022	1357
Msa1448900	MtrunA17_Chr5g0408801	70.254	985	288	2	4	983	39	1023	1354
Msa1448900	MtrunA17_Chr5g0408811	69.145	982	300	1	2	983	13	991	1353
Msa1448900	MtrunA17_Chr6g0464141	68.927	988	301	3	2	983	37	1024	1350
Msa1448900	MtrunA17_Chr5g0408581	68.554	989	307	1	1	985	37	1025	1348
Msa1448900	MtrunA17_Chr5g0408511	71.501	986	270	3	1	982	34	1012	1340
Msa1448900	MtrunA17_Chr5g0408431	68.357	986	308	1	2	983	36	1021	1308
Msa1448900	MtrunA17_Chr5g0407241	67.546	986	316	1	1	982	42	1027	1296

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1448900	AT3G47570.1	46.270	992	506	7	5	981	22	1001	0.0	859
Msa1448900	AT3G47090.1	44.960	992	520	9	5	982	22	1001	0.0	802
Msa1448900	AT3G47580.1	43.675	996	529	10	5	982	22	1003	0.0	786
Msa1448900	AT5G20480.1	43.769	1003	520	13	5	987	28	1006	0.0	778
Msa1448900	AT5G20480.2	43.769	1003	520	13	5	987	28	1006	0.0	778
Msa1448900	AT3G47110.1	45.080	996	519	10	6	984	38	1022	0.0	759
Msa1448900	AT2G24130.2	34.712	1040	525	23	6	983	30	977	1.39e-165	512
Msa1448900	AT2G24130.1	34.665	1001	508	22	37	983	54	962	7.09e-163	505
Msa1448900	AT5G46330.2	33.804	991	552	20	58	978	201	1157	6.30e-150	476
Msa1448900	AT5G46330.2	35.148	643	355	11	11	601	33	665	1.94e-85	300

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Find 207 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGAATGAATATTA+TGG	0.295162	tig0032348:-3107	Msa1448900:CDS
AAAAGAGATTGGGGAGAGTG+TGG	0.486604	tig0032348:+5389	Msa1448900:intergenic
AAAATCTCTTTAATATTATC+AGG	0.328465	tig0032348:+3262	Msa1448900:intergenic
AAAATGGAAGCTTAGAACAA+TGG	0.622145	tig0032348:-3818	Msa1448900:CDS
AAACTGGTCTCAACCGCCTG+TGG	0.598525	tig0032348:-3594	Msa1448900:CDS
AAAGGTTTCCTATAGATGGT+GGG	0.596257	tig0032348:+5620	Msa1448900:intergenic
AAATATACAAAGGTTGGACT+TGG	0.507708	tig0032348:-4927	Msa1448900:CDS
AAATGTACCAGAAAATTTGT+TGG	0.498116	tig0032348:+5498	Msa1448900:intergenic
AAATGTACTAGTATTGCCAC+AGG	0.606946	tig0032348:+3578	Msa1448900:intergenic
AACAATTGATCAACTAGCAA+AGG	0.534363	tig0032348:-4126	Msa1448900:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGTATGATATTCTAGATTCT+TGG	-	tig0032348:2933-2952	Msa1448900:intron	30.0%
TTAGAAGGAAACAATATGAC+CGG	-	tig0032348:3247-3266	Msa1448900:CDS	30.0%
TAAAATGTGTAAGGGAAGAA+AGG	+	tig0032348:3369-3388	Msa1448900:intergenic	30.0%
TTGCAAAGTAAAAGAGATTG+GGG	+	tig0032348:3591-3610	Msa1448900:intergenic	30.0%
TAAAAACTCCAAATCCTTAG+TGG	+	tig0032348:3782-3801	Msa1448900:intergenic	30.0%
TTCTAAATAAGTGAGTTTGG+TGG	+	tig0032348:3896-3915	Msa1448900:intergenic	30.0%
AAATATACAAAGGTTGGACT+TGG	-	tig0032348:4041-4060	Msa1448900:CDS	30.0%
CTCAGTCAGCTATATTATTT+GGG	-	tig0032348:4108-4127	Msa1448900:CDS	30.0%
GGAAATACTCAAAATCTCTA+AGG	+	tig0032348:4238-4257	Msa1448900:intergenic	30.0%
CTTTCAAGAAATCAACTGTA+TGG	-	tig0032348:4495-4514	Msa1448900:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0032348	gene	2866	6124	2866	ID=Msa1448900;Name=Msa1448900
tig0032348	mRNA	2866	6124	2866	ID=Msa1448900-mRNA-1;Parent=Msa1448900;Name=Msa1448900-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0\|0\|0\|0.33\|1\|1\|3\|0\|1009
tig0032348	exon	3544	6124	3544	ID=Msa1448900-mRNA-1:exon:16699;Parent=Msa1448900-mRNA-1
tig0032348	exon	3062	3430	3062	ID=Msa1448900-mRNA-1:exon:16698;Parent=Msa1448900-mRNA-1
tig0032348	exon	2866	2945	2866	ID=Msa1448900-mRNA-1:exon:16697;Parent=Msa1448900-mRNA-1
tig0032348	CDS	3544	6124	3544	ID=Msa1448900-mRNA-1:cds;Parent=Msa1448900-mRNA-1
tig0032348	CDS	3062	3430	3062	ID=Msa1448900-mRNA-1:cds;Parent=Msa1448900-mRNA-1
tig0032348	CDS	2866	2945	2866	ID=Msa1448900-mRNA-1:cds;Parent=Msa1448900-mRNA-1

Gene Sequence

>Msa1448900

ATGGCACAAGGAAACCAAACCGATCATTTGGCTTTGCTCCAATTCAAGCAATTAATATCTAGTGACCCGTATGATATTCTAGATTCTTGGAATAGTTCAACTCACTTTTGCAATTGGCATGGAATCATATGCAGTCTCAAGCATCAAAGAGTTACCAAGTTGAAGCTGCAAGGATACAAGTTGCGGGGATCCATATCTCCATATATTGGTAATCTTTCTCATTTGAGATTCCTCAACCTTGGAAACAACGGCTTCTACGGAAACATTCCACAAGAATCTGGTCGTTTGTCACGATTAAGATATTTTCATCTACTCAACAACTCGCTGGTTGGAGAATTTCCTATAAACTTGACAAAGTGCTCTGAGCTCAAAAGCATACGTTTAGAAGGAAACAATATGACCGGAAGAATACCAAGCCAAATTGGTTTTCTTCATAATCTTCAATATTTCAAATTGAGAAAAAACAAATTATCCGGAAAAATCCCACCATCTATAGGAAACCTTTCTTCCCTTACACATTTTAATATGGCTTACAATAACTTGGAGGGAAATTTTCCAAAAGAAATGTGTTTCCTAAAAAAGTTGAAGAATATAGCAGTGACTGCCAACAAATTTTCTGGTACATTTCCTTCTTGTCTTTATAATATGTCATCTCTAAATGAGTTGTCAGCTCCAATGAATAACTTTAGCGGCTCTTTTCCACCCAATATGTTCCACACTCTCCCCAATCTCTTTTACTTTGCAAATGGAGGAAATCAATTCTCTGGTAAAATCCCAATTTCCATTACAAATGCTTCAAGCTTGACGGTTATTGATATCAGTTGGAACCATTTTGTCGGACAAGTTCCGTCTCTAGGGAAGCTACAAGGACTTAGGTATCTAGCTTTGCAAGTAAACAACTTAGGTGACAATTCCACTAAGGATTTGGAGTTTTTAAAATCATTGACAAACTGTAGTAAGTTGCTAGTTCTCGATTTGTCCGTTAATAATTTTGGAGATAGTTTGCCAAATTTTGTTGGTAATTTATCCACCAAACTCACTTATTTAGAAATTACGGACAATCAAATATATGGAAAAATTCCTATAGAATTAGGAAATCTAATTAGCTTGAGTCTCTTGTCTATGTCTGGTAATCATTTGGAAGGAACGATTCCAACAACTTTTGGGAAGTTTCAAAATATACAAAGGTTGGACTTGGAACAAAACAGGTTATCAGGGGATATACCGGCCTTCATAGGCAACCTCAGTCAGCTATATTATTTGGGACTTGGTGTAAATAAATTAGAAGGGAATATTCCTCCAAATATAGGAAAATGTCAAAAGTTACAATACCTAAACTTTTCACAAAACAACCTTGCAGGATCTATACCCTTAGAGATTTTGAGTATTTCCACTTTGACAAATTCACTCGACTTGTCAAAAAACTTATTGAGTGGTAGCTTACCAAAAGAAGTGGGTATGCTAAAGAATATTGATTGGCTAGATGTCTCTGAGAATCATTTGAATGGGGACATTCCTAGAACCATTGGTGAATGCATAAGCTTAGAATACCTTTTTTTGCAAGGGAACTCCTTCAATGGAACAATACCATCCTCTTTGGCTGCTCTCAAAGGTCTACGATATTTAGATCTTTCAAGAAATCAACTGTATGGACCAATTCCTGATGCTTTGCATAATATCTCCGACTTAGAATACTTGAATGTTTCTTTTAACATGTTGGAAGGTGAGGTACCAACAAAGGGTGTCTTTGGAAATGCATCCCAAGTAGCAATAATTGGAAACAATAAGCTTTGTGGAGGTATTTCAGAGTTACATCTACCACCATGCCCTATCAAGGGTAAGAAACACAGCAAAAACCATAATTTCAAGTTGATTGCAGTGATAGTTAGCGTGGTTTTTTTTCTTCTCATACTTTCATTAATTATAGCTATCTACTGGATGAGTAAAAGAAACCAAACACCATGTTTTGATTCACCAACAATTGATCAACTAGCAAAGGTTTCATACCAAGAACTGCACCAAGGAACTGATGGGTTCTCGAATAGAAACATAATCGGATCAGGAAGTTTTGGTTCTGTGTACAAAGGAAATCTTGTTTCAGAAGATAATGTTGTTGCAGTCAAGGTCTTGAACCTCCAAAAGAAGGGAGCTCACAAGAGTTTCATTGTTGAATGTAATGCACTCAAAAATATTCAACACCGAAATTTAGTTAAGGTTTTAACATGTTGTTCGAGTACAGATTACAAAGGTCAAGAGTTTAAAGCTCTGATGTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCTGAGATTTTAAATGAAGAGCATCCAACAACATTAGACTTGGGTCATAGATTAAACATTATTATCGATGTTTCTTCAGCAATACATTATCTTCATCAAGAATGTGAGAATTGTGTTGTTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTTGATGATGACATGATTGCTCATGTGAGTGATTTTGGCATTGCAAAACTGGTCTCAACCGCCTGTGGCAATACTAGTACATTTGGAATAAAAGGAACCATTGGCTATGCTCCTCCAGAGTATGGAATGGGTTCTGAAGTGTCTACATGTGGTGACATGTATAGCTTTGGAATCCTTATTCTGGAAATGCTTACGGGTAGAAGACCCACTGATGAACTTTTTAAAGATGGTCAAAATCTGCATAACTTTGTAGCAACTTCATTTCCTGATAATATTAAAGAGATTTTGGACCCACGCCTTGTAGAAAGAGATGTAGAAGTAGCAATAGAAGATGGAAATCGTGCGAATCTTATTCCATGGGTAGGGGAATCCTTAGTTTCACTTTTTAGAATTGGACTTATTTGTTCAATGGAATCACCAAAAGAAAGAATGAATATTATGGATGTTACTAAAGAGCTTAACGCAATCCGAAAGGCCTTTCTCGCTGAATTTACAAGTCATTATGGAAAGAGAGGTTTTGCATCATGTACTTTTCTGAAGAAAATGCATGGTCCAGGTGGAACATGA

Protein sequence

>Msa1448900

MAQGNQTDHLALLQFKQLISSDPYDILDSWNSSTHFCNWHGIICSLKHQRVTKLKLQGYKLRGSISPYIGNLSHLRFLNLGNNGFYGNIPQESGRLSRLRYFHLLNNSLVGEFPINLTKCSELKSIRLEGNNMTGRIPSQIGFLHNLQYFKLRKNKLSGKIPPSIGNLSSLTHFNMAYNNLEGNFPKEMCFLKKLKNIAVTANKFSGTFPSCLYNMSSLNELSAPMNNFSGSFPPNMFHTLPNLFYFANGGNQFSGKIPISITNASSLTVIDISWNHFVGQVPSLGKLQGLRYLALQVNNLGDNSTKDLEFLKSLTNCSKLLVLDLSVNNFGDSLPNFVGNLSTKLTYLEITDNQIYGKIPIELGNLISLSLLSMSGNHLEGTIPTTFGKFQNIQRLDLEQNRLSGDIPAFIGNLSQLYYLGLGVNKLEGNIPPNIGKCQKLQYLNFSQNNLAGSIPLEILSISTLTNSLDLSKNLLSGSLPKEVGMLKNIDWLDVSENHLNGDIPRTIGECISLEYLFLQGNSFNGTIPSSLAALKGLRYLDLSRNQLYGPIPDALHNISDLEYLNVSFNMLEGEVPTKGVFGNASQVAIIGNNKLCGGISELHLPPCPIKGKKHSKNHNFKLIAVIVSVVFFLLILSLIIAIYWMSKRNQTPCFDSPTIDQLAKVSYQELHQGTDGFSNRNIIGSGSFGSVYKGNLVSEDNVVAVKVLNLQKKGAHKSFIVECNALKNIQHRNLVKVLTCCSSTDYKGQEFKALMFDYMKNGSLEQWLHPEILNEEHPTTLDLGHRLNIIIDVSSAIHYLHQECENCVVHCDLKPSNVLLDDDMIAHVSDFGIAKLVSTACGNTSTFGIKGTIGYAPPEYGMGSEVSTCGDMYSFGILILEMLTGRRPTDELFKDGQNLHNFVATSFPDNIKEILDPRLVERDVEVAIEDGNRANLIPWVGESLVSLFRIGLICSMESPKERMNIMDVTKELNAIRKAFLAEFTSHYGKRGFASCTFLKKMHGPGGT*