Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449240 | G7JZK4 | 41.346 | 104 | 61 | 0 | 77 | 180 | 167 | 270 | 1.37e-18 | 90.5 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1449240 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449240 | MtrunA17_Chr6g0459981 | 32.026 | 153 | 84 | 7 | 24 | 169 | 10 | 149 | 8.93e-18 | 76.3 |
| Msa1449240 | MtrunA17_Chr5g0430431 | 36.538 | 104 | 57 | 1 | 77 | 180 | 165 | 259 | 2.33e-15 | 71.6 |
| Msa1449240 | MtrunA17_Chr2g0281511 | 22.881 | 118 | 89 | 1 | 61 | 178 | 4 | 119 | 4.54e-13 | 62.8 |
| Msa1449240 | MtrunA17_Chr2g0309121 | 25.833 | 120 | 84 | 3 | 62 | 179 | 3 | 119 | 2.30e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 41 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTAACATTGGAAGAATTC+AGG | 0.266356 | tig0032471:+33121 | Msa1449240:intergenic |
| GACATTGATCGAGATCATAT+TGG | 0.339155 | tig0032471:+32289 | Msa1449240:intergenic |
| GGACAGTGATGCTTCTTCTA+AGG | 0.346242 | tig0032471:-32897 | Msa1449240:CDS |
| GATCTCGATCAATGTCATTC+AGG | 0.365018 | tig0032471:-32282 | Msa1449240:CDS |
| ACTTTCACACATCTTCCATT+TGG | 0.383331 | tig0032471:+33058 | Msa1449240:intergenic |
| GCAAACTTATCACTTCAGAT+AGG | 0.394974 | tig0032471:-32205 | Msa1449240:CDS |
| ACAAGAGAGCATTACATTGC+AGG | 0.413415 | tig0032471:-32255 | Msa1449240:CDS |
| AGAGCATTACATTGCAGGAT+TGG | 0.423640 | tig0032471:-32250 | Msa1449240:CDS |
| ACATTGATCGAGATCATATT+GGG | 0.436470 | tig0032471:+32290 | Msa1449240:intergenic |
| TAGCTTGGTCTTTGATCTTG+AGG | 0.448184 | tig0032471:-32111 | Msa1449240:CDS |
| AGCATCCATATGCATGGCTC+AGG | 0.448739 | tig0032471:-33084 | Msa1449240:CDS |
| AGTAACATTGGAAGAATTCA+GGG | 0.456268 | tig0032471:+33122 | Msa1449240:intergenic |
| CAAACTTATCACTTCAGATA+GGG | 0.464365 | tig0032471:-32204 | Msa1449240:CDS |
| ACATTGCAGGATTGGAATAC+CGG | 0.468840 | tig0032471:-32242 | Msa1449240:CDS |
| TGAAATTGACTCAGATTCAG+AGG | 0.498340 | tig0032471:-32849 | Msa1449240:CDS |
| GGATTTGTTTCATTTCGAAA+AGG | 0.505147 | tig0032471:-32804 | Msa1449240:CDS |
| TTAATTTGTTAAAGTAACAT+TGG | 0.515283 | tig0032471:+33110 | Msa1449240:intergenic |
| TTTCGAAATGAAACAAATCC+GGG | 0.524270 | tig0032471:+32807 | Msa1449240:intergenic |
| GGATCCCTGAGCCATGCATA+TGG | 0.528571 | tig0032471:+33079 | Msa1449240:intergenic |
| GTTCAAGATAGCTGAGGTGT+TGG | 0.530806 | tig0032471:-32918 | Msa1449240:intron |
| AGGATAGTAAATTGCGTCAA+GGG | 0.534984 | tig0032471:-32136 | Msa1449240:CDS |
| TGCTTCTTCTAAGGAGGTGA+TGG | 0.536719 | tig0032471:-32888 | Msa1449240:CDS |
| CAAACACAAATCTCAAATGA+TGG | 0.537582 | tig0032471:-32759 | Msa1449240:intron |
| ATCTCAACAAATAGTGAGCT+AGG | 0.546375 | tig0032471:+32083 | Msa1449240:intergenic |
| GCATGGCTCAGGGATCCAAA+TGG | 0.548473 | tig0032471:-33073 | Msa1449240:CDS |
| ATTGCGTCAAGGGGATAGCT+TGG | 0.561752 | tig0032471:-32126 | Msa1449240:CDS |
| CAACAAATAGTGAGCTAGGA+GGG | 0.574806 | tig0032471:+32087 | Msa1449240:intergenic |
| TAAAGAAGCATCCATATGCA+TGG | 0.595215 | tig0032471:-33090 | Msa1449240:CDS |
| CAGTGATGCTTCTTCTAAGG+AGG | 0.608346 | tig0032471:-32894 | Msa1449240:CDS |
| AGATTGGCACAAATTTCTGA+AGG | 0.609933 | tig0032471:-32156 | Msa1449240:CDS |
| CTATTTACTATTCTTACTGG+CGG | 0.613688 | tig0032471:+32057 | Msa1449240:intergenic |
| AAACTTATCACTTCAGATAG+GGG | 0.614454 | tig0032471:-32203 | Msa1449240:CDS |
| AAGGATAGTAAATTGCGTCA+AGG | 0.616877 | tig0032471:-32137 | Msa1449240:CDS |
| GAAATTGACTCAGATTCAGA+GGG | 0.620804 | tig0032471:-32848 | Msa1449240:CDS |
| CATTGAAGACTATTACGACC+CGG | 0.622500 | tig0032471:-32825 | Msa1449240:CDS |
| GGATAGTAAATTGCGTCAAG+GGG | 0.623780 | tig0032471:-32135 | Msa1449240:CDS |
| GCATCCATATGCATGGCTCA+GGG | 0.630334 | tig0032471:-33083 | Msa1449240:CDS |
| TCAACAAATAGTGAGCTAGG+AGG | 0.650664 | tig0032471:+32086 | Msa1449240:intergenic |
| TAATAGGTTCAAGATAGCTG+AGG | 0.651869 | tig0032471:-32924 | Msa1449240:intron |
| GGAGATGGCATCAACTGTGG+CGG | 0.665013 | tig0032471:-35086 | None:intergenic |
| TTGGGAGATGGCATCAACTG+TGG | 0.667314 | tig0032471:-35089 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAAAAATCATTTCTT+AGG | + | tig0032471:33135-33154 | Msa1449240:intergenic | 10.0% |
| !! | AATATAGAAAGAAAAAAAAA+AGG | + | tig0032471:33911-33930 | Msa1449240:intergenic | 10.0% |
| !!! | TTGTATATTTTGAATTAAAT+TGG | - | tig0032471:33931-33950 | Msa1449240:intron | 10.0% |
| !! | TTAATATTGAATAACTAAAT+CGG | + | tig0032471:34799-34818 | Msa1449240:intergenic | 10.0% |
| !! | GAATATAATTATACTAAACT+TGG | - | tig0032471:32997-33016 | Msa1449240:intron | 15.0% |
| !!! | TCATAAATTTTCATTATGAT+TGG | + | tig0032471:33368-33387 | Msa1449240:intergenic | 15.0% |
| !! | TTATAAGATATATTAAGAAG+TGG | + | tig0032471:33722-33741 | Msa1449240:intergenic | 15.0% |
| !! | ATAATATAAATTTCATGCAA+TGG | + | tig0032471:33857-33876 | Msa1449240:intergenic | 15.0% |
| !!! | TTAATTTGTTAAAGTAACAT+TGG | + | tig0032471:34045-34064 | Msa1449240:intergenic | 15.0% |
| !! | TTAGTTATTCAATATTAAGT+TGG | - | tig0032471:34801-34820 | Msa1449240:intron | 15.0% |
| !! | TAGAAAATTAAATAAGCTTC+TGG | - | tig0032471:32335-32354 | Msa1449240:intron | 20.0% |
| !! | ATATATATGATATTCTGTGT+TGG | - | tig0032471:33021-33040 | Msa1449240:intron | 20.0% |
| !!! | TTCTTTGAAAAATTAGCAAT+TGG | + | tig0032471:33191-33210 | Msa1449240:intergenic | 20.0% |
| !! | ATAGTGAATGGAAATAAAAT+GGG | + | tig0032471:33465-33484 | Msa1449240:intergenic | 20.0% |
| !! | TATAGTGAATGGAAATAAAA+TGG | + | tig0032471:33466-33485 | Msa1449240:intergenic | 20.0% |
| !!! | ATTTTATTTCCATTCACTAT+AGG | - | tig0032471:33465-33484 | Msa1449240:intron | 20.0% |
| !!! | GTAACTGATTTATGTTTTTA+GGG | + | tig0032471:33535-33554 | Msa1449240:intergenic | 20.0% |
| !!! | TGTAACTGATTTATGTTTTT+AGG | + | tig0032471:33536-33555 | Msa1449240:intergenic | 20.0% |
| !! | ATTATGCGTTTATAAGATAT+AGG | + | tig0032471:33646-33665 | Msa1449240:intergenic | 20.0% |
| !!! | GCTTTTCAATGATTAAAATT+AGG | - | tig0032471:33829-33848 | Msa1449240:intron | 20.0% |
| !! | AGTTTACTGGTAAATTTAAT+AGG | - | tig0032471:34212-34231 | Msa1449240:intron | 20.0% |
| !!! | GTTCTAGATATTAAATATGA+AGG | + | tig0032471:34440-34459 | Msa1449240:intergenic | 20.0% |
| !! | TAAAATGATAAATTGGTAAG+AGG | + | tig0032471:34524-34543 | Msa1449240:intergenic | 20.0% |
| !!! | TCTTACCAATTTATCATTTT+AGG | - | tig0032471:34523-34542 | Msa1449240:intron | 20.0% |
| !! | TACTTCCTAAAATGATAAAT+TGG | + | tig0032471:34531-34550 | Msa1449240:intergenic | 20.0% |
| !!! | TATGATAATTTGAGACTTTT+AGG | + | tig0032471:34771-34790 | Msa1449240:intergenic | 20.0% |
| !! | GTATGCAATAATAGTTTTCA+TGG | - | tig0032471:32276-32295 | Msa1449240:CDS | 25.0% |
| ! | TGATCATATAACTGAAACTT+TGG | + | tig0032471:32444-32463 | Msa1449240:intergenic | 25.0% |
| ! | AACATCAATTGTAGATTTGT+AGG | - | tig0032471:32597-32616 | Msa1449240:intron | 25.0% |
| !!! | TTTTCATTATGATTGGTGAT+TGG | + | tig0032471:33361-33380 | Msa1449240:intergenic | 25.0% |
| ! | TAGTGAATGGAAATAAAATG+GGG | + | tig0032471:33464-33483 | Msa1449240:intergenic | 25.0% |
| ! | CATTTATATTCATCTGACTT+TGG | + | tig0032471:33569-33588 | Msa1449240:intergenic | 25.0% |
| ! | AAGATATATTAAGAAGTGGA+AGG | + | tig0032471:33718-33737 | Msa1449240:intergenic | 25.0% |
| ! | AATGTTAAGTTAGAGTTTAC+TGG | - | tig0032471:34199-34218 | Msa1449240:intron | 25.0% |
| !! | TTTTCGAAATGAAACAAATC+CGG | + | tig0032471:34349-34368 | Msa1449240:intergenic | 25.0% |
| ! | GATATTAAATATGAAGGTGA+TGG | + | tig0032471:34434-34453 | Msa1449240:intergenic | 25.0% |
| !! | TTAATATCTAGAACTTGCTT+TGG | - | tig0032471:34446-34465 | Msa1449240:intron | 25.0% |
| !!! | ATCATTTTAGGAAGTAATTG+AGG | - | tig0032471:34535-34554 | Msa1449240:intron | 25.0% |
| ! | GTCCGAATGAAAAATATTTA+GGG | - | tig0032471:34971-34990 | Msa1449240:intron | 25.0% |
| ! | TCCGAATGAAAAATATTTAG+GGG | - | tig0032471:34972-34991 | Msa1449240:intron | 25.0% |
| !! | TCCCCTAAATATTTTTCATT+CGG | + | tig0032471:34976-34995 | Msa1449240:intergenic | 25.0% |
| ! | AAAAATATTTAGGGGAAGAT+TGG | - | tig0032471:34980-34999 | Msa1449240:intron | 25.0% |
| GCTTTCACTTAAATCATTAC+AGG | - | tig0032471:32140-32159 | Msa1449240:CDS | 30.0% | |
| !! | GGCTAGAAATTTGTTATGTT+AGG | - | tig0032471:32161-32180 | Msa1449240:CDS | 30.0% |
| ATAAGGAAATAAGTGGTTTC+AGG | - | tig0032471:32212-32231 | Msa1449240:CDS | 30.0% | |
| TAAGGAAATAAGTGGTTTCA+GGG | - | tig0032471:32213-32232 | Msa1449240:CDS | 30.0% | |
| AGCCTATATTTACATGTACT+CGG | - | tig0032471:32469-32488 | Msa1449240:intron | 30.0% | |
| AACCGAGTACATGTAAATAT+AGG | + | tig0032471:32474-32493 | Msa1449240:intergenic | 30.0% | |
| ATCCTAAAAGGTTCTCTAAA+TGG | + | tig0032471:32548-32567 | Msa1449240:intergenic | 30.0% | |
| !!! | AGAACCTTTTAGGATTCTAA+TGG | - | tig0032471:32553-32572 | Msa1449240:intron | 30.0% |
| !!! | GAACCTTTTAGGATTCTAAT+GGG | - | tig0032471:32554-32573 | Msa1449240:intron | 30.0% |
| !!! | AACCTTTTAGGATTCTAATG+GGG | - | tig0032471:32555-32574 | Msa1449240:intron | 30.0% |
| ATCAATTGTAGATTTGTAGG+TGG | - | tig0032471:32600-32619 | Msa1449240:intron | 30.0% | |
| !! | GGTAATTCATTGATTTCAGA+TGG | - | tig0032471:32621-32640 | Msa1449240:intron | 30.0% |
| TTTATAGGATACCATGATGA+TGG | - | tig0032471:32791-32810 | Msa1449240:CDS | 30.0% | |
| TTATAGGATACCATGATGAT+GGG | - | tig0032471:32792-32811 | Msa1449240:CDS | 30.0% | |
| !! | ACAAAGCGTTTTCAGTTTTT+AGG | + | tig0032471:32920-32939 | Msa1449240:intergenic | 30.0% |
| TTGGTATAATTAGGACTACA+CGG | + | tig0032471:33342-33361 | Msa1449240:intergenic | 30.0% | |
| ! | GATTGGTGATTGGTATAATT+AGG | + | tig0032471:33351-33370 | Msa1449240:intergenic | 30.0% |
| CTCTTAAATCCTATAGTGAA+TGG | + | tig0032471:33477-33496 | Msa1449240:intergenic | 30.0% | |
| !!! | ACTGATTTATGTTTTTAGGG+AGG | + | tig0032471:33532-33551 | Msa1449240:intergenic | 30.0% |
| GAACATATCTTTGGCAAAAT+CGG | + | tig0032471:33687-33706 | Msa1449240:intergenic | 30.0% | |
| AGTAACATTGGAAGAATTCA+GGG | + | tig0032471:34033-34052 | Msa1449240:intergenic | 30.0% | |
| AAGTAACATTGGAAGAATTC+AGG | + | tig0032471:34034-34053 | Msa1449240:intergenic | 30.0% | |
| AGATGTGTGAAAGTTAGATT+TGG | - | tig0032471:34103-34122 | Msa1449240:intron | 30.0% | |
| AAACAAAATTCTATGACCTC+TGG | - | tig0032471:34136-34155 | Msa1449240:intron | 30.0% | |
| AGCAGAATTCCAATAAAAGA+AGG | - | tig0032471:34171-34190 | Msa1449240:intron | 30.0% | |
| ! | CATTAGTTGCCTTCTTTTAT+TGG | + | tig0032471:34183-34202 | Msa1449240:intergenic | 30.0% |
| TTTCGAAATGAAACAAATCC+GGG | + | tig0032471:34348-34367 | Msa1449240:intergenic | 30.0% | |
| ! | GGATTTGTTTCATTTCGAAA+AGG | - | tig0032471:34348-34367 | Msa1449240:intron | 30.0% |
| CAAACACAAATCTCAAATGA+TGG | - | tig0032471:34393-34412 | Msa1449240:intron | 30.0% | |
| AACTGAACCCTAAAAATCAT+AGG | + | tig0032471:34591-34610 | Msa1449240:intergenic | 30.0% | |
| CTATAATCAGAATTGCATCA+TGG | - | tig0032471:34731-34750 | Msa1449240:intron | 30.0% | |
| ACATTGATCGAGATCATATT+GGG | + | tig0032471:34865-34884 | Msa1449240:intergenic | 30.0% | |
| !!! | TTTGCACTCATATTTTTTGC+CGG | + | tig0032471:34932-34951 | Msa1449240:intergenic | 30.0% |
| CAAACTTATCACTTCAGATA+GGG | - | tig0032471:34948-34967 | Msa1449240:intron | 30.0% | |
| AAACTTATCACTTCAGATAG+GGG | - | tig0032471:34949-34968 | Msa1449240:intron | 30.0% | |
| GGTCCGAATGAAAAATATTT+AGG | - | tig0032471:34970-34989 | Msa1449240:intron | 30.0% | |
| TTGACAACAACTCAAACACT+CGG | - | tig0032471:32186-32205 | Msa1449240:CDS | 35.0% | |
| TCGGTGAATAAGGAAATAAG+TGG | - | tig0032471:32205-32224 | Msa1449240:CDS | 35.0% | |
| AAGGAATCGTCTTATAGCAT+CGG | + | tig0032471:32244-32263 | Msa1449240:intergenic | 35.0% | |
| ATGCTATAAGACGATTCCTT+TGG | - | tig0032471:32244-32263 | Msa1449240:CDS | 35.0% | |
| CAAACTATTGTAGATCTAGC+AGG | - | tig0032471:32300-32319 | Msa1449240:intron | 35.0% | |
| CTAAATCTTGAAGTTCTACC+TGG | + | tig0032471:32524-32543 | Msa1449240:intergenic | 35.0% | |
| ! | GTCCATTTAGAGAACCTTTT+AGG | - | tig0032471:32543-32562 | Msa1449240:intron | 35.0% |
| AAGGTTGAACATTCCATTGT+GGG | - | tig0032471:32663-32682 | Msa1449240:intron | 35.0% | |
| CGATTATGGAGTTTAGCTAA+AGG | - | tig0032471:32701-32720 | Msa1449240:intron | 35.0% | |
| AAGCCATGTTATCACATCTA+AGG | - | tig0032471:32764-32783 | Msa1449240:CDS | 35.0% | |
| TGACCTTAGATGTGATAACA+TGG | + | tig0032471:32770-32789 | Msa1449240:intergenic | 35.0% | |
| ! | CACATCTAAGGTCACTTTAT+AGG | - | tig0032471:32776-32795 | Msa1449240:CDS | 35.0% |
| GACTATTACGAAACATGCAT+AGG | - | tig0032471:32819-32838 | Msa1449240:CDS | 35.0% | |
| GTATATTCCCCTATGCTTAT+AGG | + | tig0032471:32880-32899 | Msa1449240:intergenic | 35.0% | |
| TGCATGAACTCAGTTATACA+TGG | - | tig0032471:32965-32984 | Msa1449240:intron | 35.0% | |
| ! | TCTCACAAAAGATTTTGCGA+TGG | - | tig0032471:33396-33415 | Msa1449240:intron | 35.0% |
| TGGAAATAAAATGGGGCTAA+TGG | + | tig0032471:33457-33476 | Msa1449240:intergenic | 35.0% | |
| AAGGATTGTGAGTAGTGTAT+TGG | + | tig0032471:33500-33519 | Msa1449240:intergenic | 35.0% | |
| TTTAGGGAGGAAAATCATCA+AGG | + | tig0032471:33519-33538 | Msa1449240:intergenic | 35.0% | |
| GCAGTTTCAGAACATATCTT+TGG | + | tig0032471:33696-33715 | Msa1449240:intergenic | 35.0% | |
| TCATTCTGATCAAGAGAAAC+TGG | - | tig0032471:33780-33799 | Msa1449240:intron | 35.0% | |
| !! | TAAAGAAGCATCCATATGCA+TGG | - | tig0032471:34062-34081 | Msa1449240:intron | 35.0% |
| ACTTTCACACATCTTCCATT+TGG | + | tig0032471:34097-34116 | Msa1449240:intergenic | 35.0% | |
| TAATAGGTTCAAGATAGCTG+AGG | - | tig0032471:34228-34247 | Msa1449240:intron | 35.0% | |
| ! | TGAAATTGACTCAGATTCAG+AGG | - | tig0032471:34303-34322 | Msa1449240:intron | 35.0% |
| ! | GAAATTGACTCAGATTCAGA+GGG | - | tig0032471:34304-34323 | Msa1449240:intron | 35.0% |
| !! | AATATGAAGGTGATGGACTA+AGG | + | tig0032471:34427-34446 | Msa1449240:intergenic | 35.0% |
| ! | TAGTCGTGCCTATGATTTTT+AGG | - | tig0032471:34580-34599 | Msa1449240:intron | 35.0% |
| ! | AGTCGTGCCTATGATTTTTA+GGG | - | tig0032471:34581-34600 | Msa1449240:intron | 35.0% |
| ! | TTTAGGGTTCAGTTATTAGC+AGG | - | tig0032471:34597-34616 | Msa1449240:intron | 35.0% |
| TTTCCCTATTACCCATAACT+GGG | + | tig0032471:34623-34642 | Msa1449240:intergenic | 35.0% | |
| AGTTGGTTACTAAAGCATGT+TGG | - | tig0032471:34818-34837 | Msa1449240:intron | 35.0% | |
| GACATTGATCGAGATCATAT+TGG | + | tig0032471:34866-34885 | Msa1449240:intergenic | 35.0% | |
| GCAAACTTATCACTTCAGAT+AGG | - | tig0032471:34947-34966 | Msa1449240:intron | 35.0% | |
| AGATTGGCACAAATTTCTGA+AGG | - | tig0032471:34996-35015 | Msa1449240:intron | 35.0% | |
| AAGGATAGTAAATTGCGTCA+AGG | - | tig0032471:35015-35034 | Msa1449240:intron | 35.0% | |
| AGGATAGTAAATTGCGTCAA+GGG | - | tig0032471:35016-35035 | Msa1449240:intron | 35.0% | |
| ATCTCAACAAATAGTGAGCT+AGG | + | tig0032471:35072-35091 | Msa1449240:intergenic | 35.0% | |
| ! | ACTCAAACACTCGGTGAATA+AGG | - | tig0032471:32195-32214 | Msa1449240:CDS | 40.0% |
| ACGATTCCTTTGGTTGTTTG+AGG | - | tig0032471:32254-32273 | Msa1449240:CDS | 40.0% | |
| TGCATACCTCAAACAACCAA+AGG | + | tig0032471:32263-32282 | Msa1449240:intergenic | 40.0% | |
| !! | AGCTTCTGGAACTTGAGTTT+AGG | - | tig0032471:32349-32368 | Msa1449240:intron | 40.0% |
| GTCCCCATTAGAATCCTAAA+AGG | + | tig0032471:32560-32579 | Msa1449240:intergenic | 40.0% | |
| ! | TTTCTTTCTACGAGAGTGCA+AGG | - | tig0032471:32644-32663 | Msa1449240:intron | 40.0% |
| CAAGGTTGAACATTCCATTG+TGG | - | tig0032471:32662-32681 | Msa1449240:intron | 40.0% | |
| ATTCGCTCAAGACTCGATTA+TGG | - | tig0032471:32687-32706 | Msa1449240:intron | 40.0% | |
| GAGACGTTCCTATAAGCATA+GGG | - | tig0032471:32869-32888 | Msa1449240:CDS | 40.0% | |
| AGACGTTCCTATAAGCATAG+GGG | - | tig0032471:32870-32889 | Msa1449240:CDS | 40.0% | |
| GTGACTCGAATCTTGTATGA+AGG | - | tig0032471:33104-33123 | Msa1449240:CDS | 40.0% | |
| ! | AAAGATTTTGCGATGGTTGC+AGG | - | tig0032471:33403-33422 | Msa1449240:intron | 40.0% |
| AATGGTGTATGGGAATTTGG+TGG | + | tig0032471:33439-33458 | Msa1449240:intergenic | 40.0% | |
| GCTAATGGTGTATGGGAATT+TGG | + | tig0032471:33442-33461 | Msa1449240:intergenic | 40.0% | |
| AAATGGGGCTAATGGTGTAT+GGG | + | tig0032471:33449-33468 | Msa1449240:intergenic | 40.0% | |
| AAAATGGGGCTAATGGTGTA+TGG | + | tig0032471:33450-33469 | Msa1449240:intergenic | 40.0% | |
| CATTGAAGACTATTACGACC+CGG | - | tig0032471:34327-34346 | Msa1449240:intron | 40.0% | |
| !! | TTGCTTTGGAGTCCATTCAA+GGG | - | tig0032471:34460-34479 | Msa1449240:intron | 40.0% |
| ATCGTTTCTGTTCCCTTGAA+TGG | + | tig0032471:34475-34494 | Msa1449240:intergenic | 40.0% | |
| CGATGTAGCTACTAGAAATG+AGG | - | tig0032471:34491-34510 | Msa1449240:intron | 40.0% | |
| TTATTAGCAGGCCCAGTTAT+GGG | - | tig0032471:34609-34628 | Msa1449240:intron | 40.0% | |
| GTTTCCCTATTACCCATAAC+TGG | + | tig0032471:34624-34643 | Msa1449240:intergenic | 40.0% | |
| GATCTCGATCAATGTCATTC+AGG | - | tig0032471:34870-34889 | Msa1449240:intron | 40.0% | |
| !! | ACAAGAGAGCATTACATTGC+AGG | - | tig0032471:34897-34916 | Msa1449240:intron | 40.0% |
| ! | AGAGCATTACATTGCAGGAT+TGG | - | tig0032471:34902-34921 | Msa1449240:intron | 40.0% |
| ACATTGCAGGATTGGAATAC+CGG | - | tig0032471:34910-34929 | Msa1449240:intron | 40.0% | |
| GGATAGTAAATTGCGTCAAG+GGG | - | tig0032471:35017-35036 | Msa1449240:intron | 40.0% | |
| ! | TAGCTTGGTCTTTGATCTTG+AGG | - | tig0032471:35041-35060 | Msa1449240:intron | 40.0% |
| CAACAAATAGTGAGCTAGGA+GGG | + | tig0032471:35068-35087 | Msa1449240:intergenic | 40.0% | |
| TCAACAAATAGTGAGCTAGG+AGG | + | tig0032471:35069-35088 | Msa1449240:intergenic | 40.0% | |
| !!! | CTGTGGCGGTAGTTTTATTG+AGG | - | tig0032471:32080-32099 | Msa1449240:CDS | 45.0% |
| GTTCTTACCCGCAGCTAAAA+TGG | - | tig0032471:32491-32510 | Msa1449240:intron | 45.0% | |
| !!! | CACTTCTCCATTTTAGCTGC+GGG | + | tig0032471:32501-32520 | Msa1449240:intergenic | 45.0% |
| !!! | GCACTTCTCCATTTTAGCTG+CGG | + | tig0032471:32502-32521 | Msa1449240:intergenic | 45.0% |
| !! | AGCTAAAATGGAGAAGTGCC+AGG | - | tig0032471:32503-32522 | Msa1449240:intron | 45.0% |
| TCTTGAGCGAATTCCCACAA+TGG | + | tig0032471:32679-32698 | Msa1449240:intergenic | 45.0% | |
| ! | GGCTGAAATCGCATCTCTTT+TGG | - | tig0032471:32840-32859 | Msa1449240:CDS | 45.0% |
| ! | AATCGCATCTCTTTTGGCAG+AGG | - | tig0032471:32846-32865 | Msa1449240:CDS | 45.0% |
| ! | ATCGCATCTCTTTTGGCAGA+GGG | - | tig0032471:32847-32866 | Msa1449240:CDS | 45.0% |
| GGAGACGTTCCTATAAGCAT+AGG | - | tig0032471:32868-32887 | Msa1449240:CDS | 45.0% | |
| GTTCAAGATAGCTGAGGTGT+TGG | - | tig0032471:34234-34253 | Msa1449240:intron | 45.0% | |
| GGACAGTGATGCTTCTTCTA+AGG | - | tig0032471:34255-34274 | Msa1449240:intron | 45.0% | |
| ! | CAGTGATGCTTCTTCTAAGG+AGG | - | tig0032471:34258-34277 | Msa1449240:intron | 45.0% |
| ! | TGCTTCTTCTAAGGAGGTGA+TGG | - | tig0032471:34264-34283 | Msa1449240:intron | 45.0% |
| !! | CTTGCTTTGGAGTCCATTCA+AGG | - | tig0032471:34459-34478 | Msa1449240:intron | 45.0% |
| GTTATTAGCAGGCCCAGTTA+TGG | - | tig0032471:34608-34627 | Msa1449240:intron | 45.0% | |
| AGGCCCAGTTATGGGTAATA+GGG | - | tig0032471:34617-34636 | Msa1449240:intron | 45.0% | |
| ATAGTCAGCGCCCATCATCA+TGG | + | tig0032471:32805-32824 | Msa1449240:intergenic | 50.0% | |
| AGCATCCATATGCATGGCTC+AGG | - | tig0032471:34068-34087 | Msa1449240:intron | 50.0% | |
| GCATCCATATGCATGGCTCA+GGG | - | tig0032471:34069-34088 | Msa1449240:intron | 50.0% | |
| CAGGCCCAGTTATGGGTAAT+AGG | - | tig0032471:34616-34635 | Msa1449240:intron | 50.0% | |
| ATTGCGTCAAGGGGATAGCT+TGG | - | tig0032471:35026-35045 | Msa1449240:intron | 50.0% | |
| GGATCCCTGAGCCATGCATA+TGG | + | tig0032471:34076-34095 | Msa1449240:intergenic | 55.0% | |
| GCATGGCTCAGGGATCCAAA+TGG | - | tig0032471:34079-34098 | Msa1449240:intron | 55.0% | |
| TGCTGCAACATCTCTGCCAG+AGG | + | tig0032471:34155-34174 | Msa1449240:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0032471 | gene | 32070 | 35104 | 32070 | ID=Msa1449240;Name=Msa1449240 |
| tig0032471 | mRNA | 32070 | 35104 | 32070 | ID=Msa1449240-mRNA-1;Parent=Msa1449240;Name=Msa1449240-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|0.25|1|1|4|0|180 |
| tig0032471 | exon | 35087 | 35104 | 35087 | ID=Msa1449240-mRNA-1:exon:16849;Parent=Msa1449240-mRNA-1 |
| tig0032471 | exon | 33060 | 33161 | 33060 | ID=Msa1449240-mRNA-1:exon:16848;Parent=Msa1449240-mRNA-1 |
| tig0032471 | exon | 32760 | 32933 | 32760 | ID=Msa1449240-mRNA-1:exon:16847;Parent=Msa1449240-mRNA-1 |
| tig0032471 | exon | 32070 | 32318 | 32070 | ID=Msa1449240-mRNA-1:exon:16846;Parent=Msa1449240-mRNA-1 |
| tig0032471 | CDS | 35087 | 35104 | 35087 | ID=Msa1449240-mRNA-1:cds;Parent=Msa1449240-mRNA-1 |
| tig0032471 | CDS | 33060 | 33161 | 33060 | ID=Msa1449240-mRNA-1:cds;Parent=Msa1449240-mRNA-1 |
| tig0032471 | CDS | 32760 | 32933 | 32760 | ID=Msa1449240-mRNA-1:cds;Parent=Msa1449240-mRNA-1 |
| tig0032471 | CDS | 32070 | 32318 | 32070 | ID=Msa1449240-mRNA-1:cds;Parent=Msa1449240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
