Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450650 | sp|O48686|SNL3_ARATH | 52.778 | 72 | 32 | 1 | 8 | 77 | 13 | 84 | 3.27e-13 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450650 | A0A2Z6N6C3 | 58.864 | 440 | 146 | 11 | 10 | 436 | 23 | 440 | 5.18e-161 | 471 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1450650 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450650 | MtrunA17_Chr7g0252101 | 58.575 | 449 | 155 | 14 | 1 | 436 | 2 | 432 | 3.83e-160 | 459 |
| Msa1450650 | MtrunA17_Chr3g0093911 | 64.820 | 361 | 109 | 10 | 83 | 436 | 1 | 350 | 5.22e-144 | 414 |
| Msa1450650 | MtrunA17_Chr1g0207351 | 63.812 | 362 | 108 | 11 | 87 | 436 | 16 | 366 | 9.26e-142 | 409 |
| Msa1450650 | MtrunA17_Chr4g0075971 | 54.214 | 439 | 180 | 10 | 9 | 436 | 174 | 602 | 2.81e-137 | 406 |
| Msa1450650 | MtrunA17_Chr3g0077801 | 54.039 | 359 | 147 | 7 | 83 | 433 | 1 | 349 | 4.79e-117 | 346 |
| Msa1450650 | MtrunA17_Chr6g0488101 | 46.137 | 453 | 200 | 12 | 15 | 436 | 16 | 455 | 5.75e-116 | 347 |
| Msa1450650 | MtrunA17_Chr6g0488271 | 46.729 | 428 | 191 | 11 | 33 | 436 | 1 | 415 | 3.96e-112 | 335 |
| Msa1450650 | MtrunA17_Chr3g0077901 | 51.515 | 363 | 162 | 6 | 79 | 435 | 17 | 371 | 3.23e-111 | 332 |
| Msa1450650 | MtrunA17_Chr1g0209051 | 60.727 | 275 | 96 | 5 | 166 | 435 | 3 | 270 | 8.40e-104 | 309 |
| Msa1450650 | MtrunA17_Chr3g0077851 | 51.020 | 343 | 154 | 6 | 99 | 435 | 1 | 335 | 1.31e-103 | 311 |
| Msa1450650 | MtrunA17_Chr7g0243331 | 51.966 | 356 | 153 | 7 | 88 | 436 | 6 | 350 | 7.17e-103 | 310 |
| Msa1450650 | MtrunA17_Chr3g0112311 | 48.501 | 367 | 162 | 9 | 83 | 434 | 1 | 355 | 3.29e-96 | 293 |
| Msa1450650 | MtrunA17_Chr3g0122991 | 42.813 | 327 | 119 | 6 | 88 | 403 | 5 | 274 | 1.07e-71 | 227 |
| Msa1450650 | MtrunA17_Chr6g0452641 | 46.626 | 326 | 148 | 8 | 126 | 436 | 26 | 340 | 1.21e-70 | 226 |
| Msa1450650 | MtrunA17_Chr3g0123471 | 48.120 | 266 | 122 | 6 | 168 | 428 | 5 | 259 | 2.72e-64 | 207 |
| Msa1450650 | MtrunA17_Chr1g0202841 | 58.065 | 186 | 64 | 6 | 258 | 436 | 1 | 179 | 6.85e-60 | 193 |
| Msa1450650 | MtrunA17_Chr4g0075861 | 55.446 | 202 | 81 | 4 | 9 | 203 | 174 | 373 | 2.25e-53 | 182 |
| Msa1450650 | MtrunA17_Chr7g0243391 | 47.887 | 213 | 107 | 3 | 79 | 290 | 14 | 223 | 2.76e-45 | 157 |
| Msa1450650 | MtrunA17_Chr1g0196231 | 61.486 | 148 | 50 | 4 | 80 | 225 | 224 | 366 | 1.62e-42 | 153 |
| Msa1450650 | MtrunA17_Chr1g0206951 | 57.724 | 123 | 49 | 3 | 86 | 206 | 2 | 123 | 1.65e-36 | 130 |
| Msa1450650 | MtrunA17_Chr1g0187941 | 52.778 | 144 | 57 | 4 | 258 | 397 | 1 | 137 | 6.53e-36 | 129 |
| Msa1450650 | MtrunA17_Chr1g0196241 | 68.182 | 88 | 27 | 1 | 334 | 420 | 1 | 88 | 6.40e-35 | 124 |
| Msa1450650 | MtrunA17_Chr6g0486591 | 46.707 | 167 | 66 | 7 | 285 | 436 | 1 | 159 | 1.59e-33 | 123 |
| Msa1450650 | MtrunA17_Chr1g0209061 | 53.226 | 124 | 38 | 4 | 1 | 122 | 2 | 107 | 5.73e-31 | 115 |
| Msa1450650 | MtrunA17_Chr1g0209191 | 58.586 | 99 | 32 | 2 | 345 | 435 | 1 | 98 | 6.93e-30 | 111 |
| Msa1450650 | MtrunA17_Chr6g0459061 | 27.457 | 346 | 233 | 9 | 91 | 432 | 18 | 349 | 3.85e-27 | 111 |
| Msa1450650 | MtrunA17_Chr7g0238781 | 37.778 | 135 | 80 | 4 | 115 | 248 | 27 | 158 | 2.99e-15 | 73.2 |
| Msa1450650 | MtrunA17_Chr5g0415031 | 48.810 | 84 | 34 | 2 | 4 | 78 | 31 | 114 | 5.79e-14 | 74.3 |
| Msa1450650 | MtrunA17_Chr1g0206781 | 47.297 | 74 | 39 | 0 | 15 | 88 | 19 | 92 | 6.37e-14 | 68.2 |
| Msa1450650 | MtrunA17_Chr1g0206771 | 52.308 | 65 | 31 | 0 | 10 | 74 | 98 | 162 | 8.58e-13 | 66.6 |
| Msa1450650 | MtrunA17_Chr8g0364231 | 38.938 | 113 | 52 | 3 | 8 | 118 | 41 | 138 | 1.36e-12 | 70.1 |
| Msa1450650 | MtrunA17_Chr8g0364021 | 47.222 | 72 | 36 | 1 | 7 | 76 | 42 | 113 | 3.04e-12 | 66.2 |
| Msa1450650 | MtrunA17_Chr1g0205811 | 42.708 | 96 | 46 | 2 | 9 | 95 | 14 | 109 | 3.77e-12 | 63.2 |
| Msa1450650 | MtrunA17_Chr1g0205861 | 42.308 | 78 | 45 | 0 | 10 | 87 | 19 | 96 | 8.66e-12 | 62.0 |
| Msa1450650 | MtrunA17_Chr3g0077941 | 63.265 | 49 | 18 | 0 | 26 | 74 | 118 | 166 | 1.46e-11 | 62.8 |
| Msa1450650 | MtrunA17_Chr3g0077911 | 56.716 | 67 | 26 | 2 | 9 | 72 | 90 | 156 | 1.66e-11 | 62.4 |
| Msa1450650 | MtrunA17_Chr3g0077861 | 66.667 | 48 | 16 | 0 | 23 | 70 | 107 | 154 | 2.16e-11 | 62.4 |
| Msa1450650 | MtrunA17_Chr1g0209201 | 49.180 | 61 | 30 | 1 | 15 | 75 | 24 | 83 | 4.72e-11 | 60.8 |
| Msa1450650 | MtrunA17_Chr6g0452001 | 47.222 | 72 | 36 | 1 | 8 | 77 | 62 | 133 | 6.21e-11 | 64.7 |
| Msa1450650 | MtrunA17_Chr1g0205821 | 52.113 | 71 | 32 | 1 | 8 | 76 | 12 | 82 | 7.21e-11 | 60.8 |
| Msa1450650 | MtrunA17_Chr3g0077891 | 48.485 | 66 | 34 | 0 | 11 | 76 | 13 | 78 | 7.29e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450650 | AT1G24190.2 | 52.778 | 72 | 32 | 1 | 8 | 77 | 13 | 84 | 3.32e-14 | 75.5 |
| Msa1450650 | AT1G24190.1 | 52.778 | 72 | 32 | 1 | 8 | 77 | 13 | 84 | 3.32e-14 | 75.5 |
| Msa1450650 | AT1G24190.3 | 52.778 | 72 | 32 | 1 | 8 | 77 | 13 | 84 | 3.48e-14 | 75.5 |
| Msa1450650 | AT1G70060.2 | 54.286 | 70 | 30 | 1 | 9 | 76 | 14 | 83 | 1.62e-12 | 70.5 |
| Msa1450650 | AT1G70060.1 | 54.286 | 70 | 30 | 1 | 9 | 76 | 14 | 83 | 1.62e-12 | 70.5 |
| Msa1450650 | AT3G01320.2 | 38.017 | 121 | 56 | 4 | 8 | 126 | 56 | 159 | 4.72e-12 | 68.9 |
| Msa1450650 | AT3G01320.1 | 38.017 | 121 | 56 | 4 | 8 | 126 | 56 | 159 | 5.21e-12 | 68.6 |
| Msa1450650 | AT1G59890.4 | 47.436 | 78 | 39 | 1 | 9 | 84 | 45 | 122 | 1.38e-11 | 67.4 |
| Msa1450650 | AT1G59890.1 | 47.436 | 78 | 39 | 1 | 9 | 84 | 45 | 122 | 1.46e-11 | 67.4 |
| Msa1450650 | AT1G59890.3 | 47.436 | 78 | 39 | 1 | 9 | 84 | 45 | 122 | 1.48e-11 | 67.4 |
| Msa1450650 | AT1G59890.2 | 47.436 | 78 | 39 | 1 | 9 | 84 | 45 | 122 | 1.52e-11 | 67.0 |
| Msa1450650 | AT5G15020.2 | 45.349 | 86 | 42 | 2 | 8 | 88 | 51 | 136 | 1.56e-11 | 67.4 |
| Msa1450650 | AT5G15020.1 | 45.349 | 86 | 42 | 2 | 8 | 88 | 51 | 136 | 1.60e-11 | 67.0 |
| Msa1450650 | AT1G70030.3 | 44.444 | 63 | 35 | 0 | 14 | 76 | 29 | 91 | 4.34e-11 | 60.8 |
| Msa1450650 | AT1G70030.2 | 38.554 | 83 | 47 | 1 | 14 | 92 | 29 | 111 | 4.92e-11 | 60.8 |
Find 90 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGCATACTGATTTAATTT+TGG | 0.112441 | tig0033035:+23635 | Msa1450650:CDS |
| ACCTTCTTTATTCTTGTAAA+TGG | 0.131332 | tig0033035:-28153 | None:intergenic |
| CTCTCATATCCCCACTTATT+CGG | 0.195575 | tig0033035:-28684 | None:intergenic |
| TAAGAAACTTGAAGAATTAA+TGG | 0.210838 | tig0033035:-27976 | None:intergenic |
| CTCTGAGGAATTTGTCTTGA+TGG | 0.261294 | tig0033035:+28248 | Msa1450650:CDS |
| ATGAAATACCCTCAACCTTT+AGG | 0.276024 | tig0033035:+28478 | Msa1450650:CDS |
| CTCTGAAATCAAGCCTTATA+TGG | 0.300310 | tig0033035:+28191 | Msa1450650:CDS |
| AGAGTCAAGCAGCTGCTTAA+AGG | 0.323406 | tig0033035:+23615 | Msa1450650:CDS |
| GCAAAATGTAGTGTGTATTC+CGG | 0.338701 | tig0033035:+28741 | Msa1450650:CDS |
| TAAACATAGATGAGTGCTTC+TGG | 0.348959 | tig0033035:+28055 | Msa1450650:CDS |
| AAAGGTTGAGGGTATTTCAT+TGG | 0.363083 | tig0033035:-28475 | None:intergenic |
| TCTCATATCCCCACTTATTC+GGG | 0.366790 | tig0033035:-28683 | None:intergenic |
| TAAGGGATGTGTACAGGATA+AGG | 0.368086 | tig0033035:+28553 | Msa1450650:CDS |
| CATATTCCTACACGTTTGAT+TGG | 0.378889 | tig0033035:+28811 | Msa1450650:CDS |
| CCCTTTCCTCCGTATCCTTA+CGG | 0.387410 | tig0033035:+23317 | Msa1450650:five_prime_UTR |
| CAAAATGTAGTGTGTATTCC+GGG | 0.390668 | tig0033035:+28742 | Msa1450650:CDS |
| TTATGTCAAACTGGAAACTT+TGG | 0.395167 | tig0033035:+28608 | Msa1450650:CDS |
| AACCATGAGTTATGTCAAAC+TGG | 0.399495 | tig0033035:+28599 | Msa1450650:CDS |
| AGTTTGATTTGATGTTCCTT+TGG | 0.399942 | tig0033035:-23675 | None:intergenic |
| CACAGTTCGCCGTAAGGATA+CGG | 0.402347 | tig0033035:-23326 | None:intergenic |
| AGTCATCAAAATCTAATGTT+TGG | 0.409906 | tig0033035:-27873 | None:intergenic |
| GTTGTGATCTAAAGGGAAAA+AGG | 0.417556 | tig0033035:+27795 | Msa1450650:intron |
| GAGTCAAGCAGCTGCTTAAA+GGG | 0.418662 | tig0033035:+23616 | Msa1450650:CDS |
| TTGGTCGGGTATGCTGATAA+AGG | 0.422181 | tig0033035:-28016 | None:intergenic |
| AAGGTTGAGGGTATTTCATT+GGG | 0.422234 | tig0033035:-28474 | None:intergenic |
| ATATGGATCTTAACCGTGCT+TGG | 0.424144 | tig0033035:+28208 | Msa1450650:CDS |
| GCACGGTTAAGATCCATATA+AGG | 0.426694 | tig0033035:-28204 | None:intergenic |
| TTGCCGGTGTGTGCAAGAAT+TGG | 0.432034 | tig0033035:+27905 | Msa1450650:CDS |
| TGCATTATGCTTCCAGCTCA+TGG | 0.442339 | tig0033035:+28786 | Msa1450650:CDS |
| TGATTTGATGTTCCTTTGGC+AGG | 0.443659 | tig0033035:-23671 | None:intergenic |
| TGGGTTACTTATTCGACAAT+GGG | 0.449270 | tig0033035:+28324 | Msa1450650:CDS |
| AATATCCAAGTCACTCAACT+AGG | 0.457567 | tig0033035:-28869 | None:intergenic |
| ATTACAATTAACCAACCTAA+AGG | 0.459909 | tig0033035:-28493 | None:intergenic |
| TTGGCAGCGATTGTACAAGC+TGG | 0.463810 | tig0033035:+23501 | Msa1450650:CDS |
| AAGCTGGGTTTCAAGATAAG+AGG | 0.471098 | tig0033035:+23517 | Msa1450650:CDS |
| AAGGGATGTGTACAGGATAA+GGG | 0.471486 | tig0033035:+28554 | Msa1450650:CDS |
| AATATATGTTGTCACTTTCG+AGG | 0.471894 | tig0033035:+28389 | Msa1450650:CDS |
| ATCAATCTCGAAATTGTGGT+TGG | 0.483573 | tig0033035:+28304 | Msa1450650:CDS |
| TATGTCAAACTGGAAACTTT+GGG | 0.486945 | tig0033035:+28609 | Msa1450650:CDS |
| ATAAAATAAGGGATGTGTAC+AGG | 0.487509 | tig0033035:+28547 | Msa1450650:CDS |
| TAGGAATATGCTCCATGAGC+TGG | 0.492289 | tig0033035:-28798 | None:intergenic |
| GTCACTTTCGAGGGCAACAT+AGG | 0.493506 | tig0033035:+28399 | Msa1450650:CDS |
| TCCATTTACAAGAATAAAGA+AGG | 0.500617 | tig0033035:+28152 | Msa1450650:CDS |
| TCAATCTCGAAATTGTGGTT+GGG | 0.502080 | tig0033035:+28305 | Msa1450650:CDS |
| TGATAGACATGCAAGATCTC+AGG | 0.503913 | tig0033035:-28285 | None:intergenic |
| GAGCATACTATTGGAGGGGC+AGG | 0.506739 | tig0033035:-23357 | None:intergenic |
| TGGCAGCGATTGTACAAGCT+GGG | 0.511829 | tig0033035:+23502 | Msa1450650:CDS |
| CCGTAAGGATACGGAGGAAA+GGG | 0.515415 | tig0033035:-23317 | None:intergenic |
| AGCTGGGTTTCAAGATAAGA+GGG | 0.518029 | tig0033035:+23518 | Msa1450650:CDS |
| CATTGAGCAACCCGAATAAG+TGG | 0.521050 | tig0033035:+28673 | Msa1450650:CDS |
| GTCTATCAATCTCGAAATTG+TGG | 0.522717 | tig0033035:+28300 | Msa1450650:CDS |
| ATTAACCAACCTAAAGGTTG+AGG | 0.523383 | tig0033035:-28487 | None:intergenic |
| TCACTTTCGAGGGCAACATA+GGG | 0.529869 | tig0033035:+28400 | Msa1450650:CDS |
| AATACCCTCAACCTTTAGGT+TGG | 0.533454 | tig0033035:+28482 | Msa1450650:CDS |
| AATGATATCAAGCACATCAC+AGG | 0.534113 | tig0033035:-27848 | None:intergenic |
| CCGGTGTGTGCAAGAATTGG+AGG | 0.534247 | tig0033035:+27908 | Msa1450650:CDS |
| TTCCAGTTTGACATAACTCA+TGG | 0.536068 | tig0033035:-28601 | None:intergenic |
| ATATATGTTGTCACTTTCGA+GGG | 0.539644 | tig0033035:+28390 | Msa1450650:CDS |
| AAAACTCCTAAAAGATGTCA+AGG | 0.541090 | tig0033035:+23560 | Msa1450650:CDS |
| CATATAAGGCTTGATTTCAG+AGG | 0.542743 | tig0033035:-28190 | None:intergenic |
| TTGATGTTCCTTTGGCAGGA+AGG | 0.546048 | tig0033035:-23667 | None:intergenic |
| TTGGGTTACTTATTCGACAA+TGG | 0.547533 | tig0033035:+28323 | Msa1450650:CDS |
| GATGAGGAGCATACTATTGG+AGG | 0.549807 | tig0033035:-23363 | None:intergenic |
| ATATCCAAGTCACTCAACTA+GGG | 0.561752 | tig0033035:-28868 | None:intergenic |
| ACCTATGTTACGTCTTCTAA+CGG | 0.564873 | tig0033035:+28084 | Msa1450650:CDS |
| TTAACCAACCTAAAGGTTGA+GGG | 0.566777 | tig0033035:-28486 | None:intergenic |
| CAAATCAAACTTGAGACCAC+TGG | 0.570634 | tig0033035:+23687 | Msa1450650:CDS |
| ATATAAGGCTTGATTTCAGA+GGG | 0.576887 | tig0033035:-28189 | None:intergenic |
| TATTTGCACAGTTCGCCGTA+AGG | 0.578894 | tig0033035:-23332 | None:intergenic |
| GCACATCACAGGGAAGTTCA+CGG | 0.580584 | tig0033035:-27837 | None:intergenic |
| GCCGTAAGGATACGGAGGAA+AGG | 0.582507 | tig0033035:-23318 | None:intergenic |
| ATGAGGAGCATACTATTGGA+GGG | 0.590734 | tig0033035:-23362 | None:intergenic |
| AGTAAGAGTTGTTGACGCTG+TGG | 0.603128 | tig0033035:+28353 | Msa1450650:CDS |
| CAGCTGCTTGACTCTTGCCG+CGG | 0.614341 | tig0033035:-23607 | None:intergenic |
| ATTCAACACCTTCCTGCCAA+AGG | 0.618562 | tig0033035:+23659 | Msa1450650:CDS |
| CACTTTCGAGGGCAACATAG+GGG | 0.620239 | tig0033035:+28401 | Msa1450650:CDS |
| ATTGAGCAACCCGAATAAGT+GGG | 0.621690 | tig0033035:+28674 | Msa1450650:CDS |
| CGGTGTGTGCAAGAATTGGA+GGG | 0.623193 | tig0033035:+27909 | Msa1450650:CDS |
| TGTCAAAAGCAAGCCAAGCA+CGG | 0.623330 | tig0033035:-28221 | None:intergenic |
| TCCGTTAGAAGACGTAACAT+AGG | 0.634163 | tig0033035:-28085 | None:intergenic |
| AAAACACCAATCAAACGTGT+AGG | 0.635770 | tig0033035:-28817 | None:intergenic |
| TGAGGAGCATACTATTGGAG+GGG | 0.644201 | tig0033035:-23361 | None:intergenic |
| ATGATATCAAGCACATCACA+GGG | 0.647975 | tig0033035:-27847 | None:intergenic |
| AATTTACACAAGAGATGCCG+CGG | 0.649048 | tig0033035:+23590 | Msa1450650:CDS |
| CCTCCAATTCTTGCACACAC+CGG | 0.651110 | tig0033035:-27908 | None:intergenic |
| TTGAGCAACCCGAATAAGTG+GGG | 0.684144 | tig0033035:+28675 | Msa1450650:CDS |
| AGTTCGCCGTAAGGATACGG+AGG | 0.701972 | tig0033035:-23323 | None:intergenic |
| GCTGGGTTTCAAGATAAGAG+GGG | 0.722942 | tig0033035:+23519 | Msa1450650:CDS |
| TCGCTGCCAACGCATCATCG+CGG | 0.747815 | tig0033035:-23488 | None:intergenic |
| AAAATGTAGTGTGTATTCCG+GGG | 0.780507 | tig0033035:+28743 | Msa1450650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTCTGTTAAAAAAAAT+TGG | - | tig0033035:24866-24885 | None:intergenic | 10.0% |
| !! | AAATATAACTTAGTAAAATA+TGG | - | tig0033035:25155-25174 | None:intergenic | 10.0% |
| !! | TATATAAATAAATAAATAGG+GGG | - | tig0033035:25205-25224 | None:intergenic | 10.0% |
| !! | CTATATAAATAAATAAATAG+GGG | - | tig0033035:25206-25225 | None:intergenic | 10.0% |
| !! | GCTATATAAATAAATAAATA+GGG | - | tig0033035:25207-25226 | None:intergenic | 10.0% |
| !! | TTCATAGATTAAAAAAAAAA+AGG | + | tig0033035:27375-27394 | Msa1450650:intron | 10.0% |
| !!! | ATTAATTTTGTGAATAAAGA+TGG | + | tig0033035:23452-23471 | Msa1450650:intron | 15.0% |
| !! | GCTATATATATATAATTCTA+TGG | + | tig0033035:23781-23800 | Msa1450650:intron | 15.0% |
| !! | AGTTCAATTATATTATGTTA+TGG | + | tig0033035:23958-23977 | Msa1450650:intron | 15.0% |
| !! | AATACAACATAGATATTTAT+GGG | - | tig0033035:24103-24122 | None:intergenic | 15.0% |
| !! | AAATACAACATAGATATTTA+TGG | - | tig0033035:24104-24123 | None:intergenic | 15.0% |
| !!! | TTTTTGCTCTTAAAAAAATT+TGG | - | tig0033035:24697-24716 | None:intergenic | 15.0% |
| !! | TAAAAAAAATTGGATAACTA+AGG | - | tig0033035:24856-24875 | None:intergenic | 15.0% |
| !!! | TTTTTTTAACAGAAAATAGA+AGG | + | tig0033035:24868-24887 | Msa1450650:intron | 15.0% |
| !!! | TTTTTTAACAGAAAATAGAA+GGG | + | tig0033035:24869-24888 | Msa1450650:intron | 15.0% |
| !! | ATATAAATAAATAAATAGGG+GGG | - | tig0033035:25204-25223 | None:intergenic | 15.0% |
| !! | CGCTATATAAATAAATAAAT+AGG | - | tig0033035:25208-25227 | None:intergenic | 15.0% |
| !! | TTTATTTATTTATATAGCGA+AGG | + | tig0033035:25209-25228 | Msa1450650:intron | 15.0% |
| !! | TTATAGAATCAATTAATGTT+TGG | - | tig0033035:25677-25696 | None:intergenic | 15.0% |
| !!! | ATACATTTTTTATATCTGAA+TGG | + | tig0033035:25712-25731 | Msa1450650:intron | 15.0% |
| !! | AATTAGATATTAGATATACA+TGG | + | tig0033035:26103-26122 | Msa1450650:intron | 15.0% |
| !!! | TTTTCATTTTTCTTTTTGTT+GGG | + | tig0033035:27477-27496 | Msa1450650:intron | 15.0% |
| !! | TGTTTCAGAAATAAATAAAA+AGG | + | tig0033035:27740-27759 | Msa1450650:intron | 15.0% |
| !!! | ATTTTAGGTACAATAAAATA+AGG | + | tig0033035:28535-28554 | Msa1450650:CDS | 15.0% |
| !!! | TTTTAGGTACAATAAAATAA+GGG | + | tig0033035:28536-28555 | Msa1450650:CDS | 15.0% |
| !!! | TGGGAAAATTTTATTACTAT+AGG | - | tig0033035:24388-24407 | None:intergenic | 20.0% |
| !! | AGAAATTTACACAACAATTT+CGG | - | tig0033035:25131-25150 | None:intergenic | 20.0% |
| !! | TATAAATAAATAAATAGGGG+GGG | - | tig0033035:25203-25222 | None:intergenic | 20.0% |
| !!! | AATTTTTTATAGGGTTAAAG+AGG | - | tig0033035:25562-25581 | None:intergenic | 20.0% |
| !!! | AAATGTATGTTTCTATGTAT+GGG | - | tig0033035:25700-25719 | None:intergenic | 20.0% |
| !!! | AAAATGTATGTTTCTATGTA+TGG | - | tig0033035:25701-25720 | None:intergenic | 20.0% |
| !!! | ATTTTTTATATCTGAATGGA+TGG | + | tig0033035:25716-25735 | Msa1450650:intron | 20.0% |
| !!! | TTATAAGCATTTTCATAATC+AGG | + | tig0033035:26038-26057 | Msa1450650:intron | 20.0% |
| !! | AAACACAATTACAATTTAGT+TGG | - | tig0033035:26135-26154 | None:intergenic | 20.0% |
| !! | ACTGAGAAAATAAATCTTAA+TGG | + | tig0033035:26189-26208 | Msa1450650:intron | 20.0% |
| !! | ATCGTCAATATAAAGATTAT+AGG | + | tig0033035:26476-26495 | Msa1450650:intron | 20.0% |
| !! | TCGTCAATATAAAGATTATA+GGG | + | tig0033035:26477-26496 | Msa1450650:intron | 20.0% |
| !! | TACTAATAAAACTGAAGAAT+TGG | - | tig0033035:27131-27150 | None:intergenic | 20.0% |
| !! | CAACAAAAAGAAAAATGAAA+AGG | - | tig0033035:27478-27497 | None:intergenic | 20.0% |
| !!! | CTTTTCATTTTTCTTTTTGT+TGG | + | tig0033035:27476-27495 | Msa1450650:intron | 20.0% |
| !!! | TTTCATTTTTCTTTTTGTTG+GGG | + | tig0033035:27478-27497 | Msa1450650:intron | 20.0% |
| !! | TAAGAAACTTGAAGAATTAA+TGG | - | tig0033035:27979-27998 | None:intergenic | 20.0% |
| !!! | TTAAGCGATAATTAACTTTT+TGG | - | tig0033035:28038-28057 | None:intergenic | 20.0% |
| ! | AAAATCAATAATTCGAGTGA+AGG | - | tig0033035:23388-23407 | None:intergenic | 25.0% |
| ! | AATGATAAATTACTAACCAG+TGG | - | tig0033035:23706-23725 | None:intergenic | 25.0% |
| ! | AGTACAATCATACTAAATGT+TGG | + | tig0033035:24039-24058 | Msa1450650:intron | 25.0% |
| ! | ATAGTATCTCAATACAATGA+AGG | + | tig0033035:24072-24091 | Msa1450650:intron | 25.0% |
| ! | TAGTATCTCAATACAATGAA+GGG | + | tig0033035:24073-24092 | Msa1450650:intron | 25.0% |
| ! | AATAACCTACAATGTGATAA+AGG | - | tig0033035:24152-24171 | None:intergenic | 25.0% |
| !! | TTTGTCTTTGATAGCATAAA+TGG | + | tig0033035:24176-24195 | Msa1450650:intron | 25.0% |
| !!! | AACAACCTTATTTGCTATAT+CGG | + | tig0033035:24310-24329 | Msa1450650:intron | 25.0% |
| !!! | CTATTTTTATATCAAACCCT+TGG | - | tig0033035:24340-24359 | None:intergenic | 25.0% |
| ! | TCCATCAGTTAATTACTAAT+GGG | - | tig0033035:24407-24426 | None:intergenic | 25.0% |
| ! | TTCCATCAGTTAATTACTAA+TGG | - | tig0033035:24408-24427 | None:intergenic | 25.0% |
| !!! | TAGAAGCATTGATTAAACTT+AGG | - | tig0033035:24474-24493 | None:intergenic | 25.0% |
| !!! | TAGAAGCATTGATTAAACTT+AGG | - | tig0033035:24474-24493 | None:intergenic | 25.0% |
| !! | AATCTTTATGAACATGCTTT+TGG | - | tig0033035:25020-25039 | None:intergenic | 25.0% |
| ! | TTCATAAAGATTGTCTCATT+AGG | + | tig0033035:25028-25047 | Msa1450650:intron | 25.0% |
| ! | TCATAAAGATTGTCTCATTA+GGG | + | tig0033035:25029-25048 | Msa1450650:intron | 25.0% |
| !!! | TTGGTTTTCCAATTTTAGAT+AGG | - | tig0033035:25429-25448 | None:intergenic | 25.0% |
| ! | AAACATATATTAATGAGCCA+AGG | - | tig0033035:25458-25477 | None:intergenic | 25.0% |
| ! | TAATATATGTTTACTCCCAA+TGG | + | tig0033035:25466-25485 | Msa1450650:intron | 25.0% |
| ! | ACCCTATAAAAAATTGTGTT+TGG | + | tig0033035:25567-25586 | Msa1450650:intron | 25.0% |
| !!! | GCCAAACACAATTTTTTATA+GGG | - | tig0033035:25571-25590 | None:intergenic | 25.0% |
| !!! | AGCCAAACACAATTTTTTAT+AGG | - | tig0033035:25572-25591 | None:intergenic | 25.0% |
| ! | AAAACATAAGCTATAAGTCA+TGG | + | tig0033035:26245-26264 | Msa1450650:intron | 25.0% |
| ! | TGATAAATCGTTACAAAACT+TGG | + | tig0033035:26556-26575 | Msa1450650:intron | 25.0% |
| ! | ACAACATTAATGAGACATAA+TGG | + | tig0033035:26863-26882 | Msa1450650:intron | 25.0% |
| ! | GGAAATTAGTATAGCAATTA+GGG | + | tig0033035:27023-27042 | Msa1450650:intron | 25.0% |
| !! | ACTTACTCTAAAAGCTAATT+AGG | - | tig0033035:27065-27084 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTGAGAAGTCTTA+TGG | + | tig0033035:27222-27241 | Msa1450650:intron | 25.0% |
| !!! | TATGGGTTATTTTAAAACGA+TGG | - | tig0033035:27293-27312 | None:intergenic | 25.0% |
| ! | AGAAAAATGAAAAGGATTAG+AGG | - | tig0033035:27470-27489 | None:intergenic | 25.0% |
| !!! | ATCTATTGTTTGCTATACAT+TGG | + | tig0033035:27600-27619 | Msa1450650:intron | 25.0% |
| ! | AGTCATCAAAATCTAATGTT+TGG | - | tig0033035:27876-27895 | None:intergenic | 25.0% |
| !!! | TTCTAACGGATATTTTATCT+CGG | + | tig0033035:28098-28117 | Msa1450650:CDS | 25.0% |
| ! | TCCATTTACAAGAATAAAGA+AGG | + | tig0033035:28152-28171 | Msa1450650:CDS | 25.0% |
| ! | ACCTTCTTTATTCTTGTAAA+TGG | - | tig0033035:28156-28175 | None:intergenic | 25.0% |
| ! | ATTACAATTAACCAACCTAA+AGG | - | tig0033035:28496-28515 | None:intergenic | 25.0% |
| !!! | TTTCAATTTTTTATCATCCC+CGG | - | tig0033035:28763-28782 | None:intergenic | 25.0% |
| !! | TTTTAGACATCAACAATATG+AGG | + | tig0033035:28836-28855 | Msa1450650:CDS | 25.0% |
| AAAACTCCTAAAAGATGTCA+AGG | + | tig0033035:23560-23579 | Msa1450650:CDS | 30.0% | |
| ! | TTTGATCCTTGACATCTTTT+AGG | - | tig0033035:23569-23588 | None:intergenic | 30.0% |
| !!! | AGGGCATACTGATTTAATTT+TGG | + | tig0033035:23635-23654 | Msa1450650:CDS | 30.0% |
| !!! | GGGCATACTGATTTAATTTT+GGG | + | tig0033035:23636-23655 | Msa1450650:CDS | 30.0% |
| !! | AGTTTGATTTGATGTTCCTT+TGG | - | tig0033035:23678-23697 | None:intergenic | 30.0% |
| TATGTTATGGTTGTTTGTGA+TGG | + | tig0033035:23971-23990 | Msa1450650:intron | 30.0% | |
| TAAGACCTTTATCACATTGT+AGG | + | tig0033035:24144-24163 | Msa1450650:intron | 30.0% | |
| AGTAGAGTGTAATCATTGAA+GGG | - | tig0033035:24222-24241 | None:intergenic | 30.0% | |
| TAGTAGAGTGTAATCATTGA+AGG | - | tig0033035:24223-24242 | None:intergenic | 30.0% | |
| TAACAACCATATTTACTAGC+TGG | - | tig0033035:24279-24298 | None:intergenic | 30.0% | |
| TCCCATTAGTAATTAACTGA+TGG | + | tig0033035:24403-24422 | Msa1450650:intron | 30.0% | |
| CTTAGCTTAAAACATTTCGA+TGG | - | tig0033035:24813-24832 | None:intergenic | 30.0% | |
| !! | TTATTTATGATGGGCTTTCA+AGG | - | tig0033035:25280-25299 | None:intergenic | 30.0% |
| TTGAAAGCCCATCATAAATA+AGG | + | tig0033035:25279-25298 | Msa1450650:intron | 30.0% | |
| CTGTACAACAACTAATGTAT+AGG | - | tig0033035:25365-25384 | None:intergenic | 30.0% | |
| AAACGCATGAACATATACAT+TGG | + | tig0033035:25610-25629 | Msa1450650:intron | 30.0% | |
| ATATACATTGGAGAGTTTGT+TGG | + | tig0033035:25622-25641 | Msa1450650:intron | 30.0% | |
| TTTAACACATGTCTGTTACT+TGG | + | tig0033035:25804-25823 | Msa1450650:intron | 30.0% | |
| ATTAATGTGACAAGCCAATA+AGG | + | tig0033035:25840-25859 | Msa1450650:intron | 30.0% | |
| !! | CATATAGCAAGTTTTGTAAG+TGG | - | tig0033035:25868-25887 | None:intergenic | 30.0% |
| TGTGTGTATAATATTGCATG+TGG | - | tig0033035:25937-25956 | None:intergenic | 30.0% | |
| CATCATACATTTGCTCTATA+AGG | + | tig0033035:26309-26328 | Msa1450650:intron | 30.0% | |
| !!! | ACTTATTTTTGTGTAAGAGC+AGG | + | tig0033035:26416-26435 | Msa1450650:intron | 30.0% |
| ! | ATGTTTTCATCGTTGTTGTA+GGG | - | tig0033035:26648-26667 | None:intergenic | 30.0% |
| ! | TATGTTTTCATCGTTGTTGT+AGG | - | tig0033035:26649-26668 | None:intergenic | 30.0% |
| CACATAAGCAAATAGAATGA+AGG | + | tig0033035:26697-26716 | Msa1450650:intron | 30.0% | |
| !! | TGTAGCTGGCTTTATAAATA+TGG | - | tig0033035:26752-26771 | None:intergenic | 30.0% |
| GATGCATTTAGTTAAGTAGT+TGG | + | tig0033035:26812-26831 | Msa1450650:intron | 30.0% | |
| AATGAGACATAATGGCTTAT+TGG | + | tig0033035:26871-26890 | Msa1450650:intron | 30.0% | |
| GGGAAATTAGTATAGCAATT+AGG | + | tig0033035:27022-27041 | Msa1450650:intron | 30.0% | |
| !!! | GTTATTTTAAAACGATGGCA+TGG | - | tig0033035:27288-27307 | None:intergenic | 30.0% |
| GAAGTGTAGTTGTAACTTAT+GGG | - | tig0033035:27310-27329 | None:intergenic | 30.0% | |
| TGAAGTGTAGTTGTAACTTA+TGG | - | tig0033035:27311-27330 | None:intergenic | 30.0% | |
| TACATTGGCATGAAAAAAAG+AGG | + | tig0033035:27615-27634 | Msa1450650:intron | 30.0% | |
| ATCACAACAATGACAACATT+AGG | - | tig0033035:27783-27802 | None:intergenic | 30.0% | |
| TTGTCATTGTTGTGATCTAA+AGG | + | tig0033035:27787-27806 | Msa1450650:intron | 30.0% | |
| TGTCATTGTTGTGATCTAAA+GGG | + | tig0033035:27788-27807 | Msa1450650:intron | 30.0% | |
| !!! | AATTCACCGGAGAAATTTTT+TGG | + | tig0033035:27942-27961 | Msa1450650:CDS | 30.0% |
| !! | CGATAATTAACTTTTTGGTC+GGG | - | tig0033035:28033-28052 | None:intergenic | 30.0% |
| !! | GCGATAATTAACTTTTTGGT+CGG | - | tig0033035:28034-28053 | None:intergenic | 30.0% |
| ATATAAGGCTTGATTTCAGA+GGG | - | tig0033035:28192-28211 | None:intergenic | 30.0% | |
| !! | AATATATGTTGTCACTTTCG+AGG | + | tig0033035:28389-28408 | Msa1450650:CDS | 30.0% |
| !! | ATATATGTTGTCACTTTCGA+GGG | + | tig0033035:28390-28409 | Msa1450650:CDS | 30.0% |
| ! | AACTTGTAGTGCTTGATTTT+AGG | + | tig0033035:28520-28539 | Msa1450650:CDS | 30.0% |
| ATAAAATAAGGGATGTGTAC+AGG | + | tig0033035:28547-28566 | Msa1450650:CDS | 30.0% | |
| TTATGTCAAACTGGAAACTT+TGG | + | tig0033035:28608-28627 | Msa1450650:CDS | 30.0% | |
| TATGTCAAACTGGAAACTTT+GGG | + | tig0033035:28609-28628 | Msa1450650:CDS | 30.0% | |
| AATAATTCGAGTGAAGGATG+AGG | - | tig0033035:23382-23401 | None:intergenic | 35.0% | |
| GTCATACCAGCTAGTAAATA+TGG | + | tig0033035:24270-24289 | Msa1450650:intron | 35.0% | |
| ! | CACATGGACGATTTTCTTTT+AGG | + | tig0033035:24563-24582 | Msa1450650:intron | 35.0% |
| !! | AAATTTGGTGTTGCACATGT+TGG | - | tig0033035:24682-24701 | None:intergenic | 35.0% |
| !!! | ATAGCGCTATTTTTTGGTGA+AGG | - | tig0033035:24729-24748 | None:intergenic | 35.0% |
| !!! | ACACTGATAGCGCTATTTTT+TGG | - | tig0033035:24735-24754 | None:intergenic | 35.0% |
| TGTTGTACATCTGTGAAGTT+AGG | - | tig0033035:24945-24964 | None:intergenic | 35.0% | |
| TATATGGTGCATAACTGACA+AGG | - | tig0033035:25059-25078 | None:intergenic | 35.0% | |
| TCAGTTATGCACCATATATG+AGG | + | tig0033035:25061-25080 | Msa1450650:intron | 35.0% | |
| !! | CACAGAGCCTTATTTATGAT+GGG | - | tig0033035:25289-25308 | None:intergenic | 35.0% |
| !! | TCACAGAGCCTTATTTATGA+TGG | - | tig0033035:25290-25309 | None:intergenic | 35.0% |
| GTGCATGTCTAATACATGTT+GGG | - | tig0033035:25316-25335 | None:intergenic | 35.0% | |
| AGTGCATGTCTAATACATGT+TGG | - | tig0033035:25317-25336 | None:intergenic | 35.0% | |
| CATTCCAATTGTTCATGAGT+AGG | - | tig0033035:25520-25539 | None:intergenic | 35.0% | |
| ! | GCGTTTTGCACATTAAATGA+GGG | - | tig0033035:25596-25615 | None:intergenic | 35.0% |
| ! | TGCGTTTTGCACATTAAATG+AGG | - | tig0033035:25597-25616 | None:intergenic | 35.0% |
| ! | TTTTGTAAGTGGCTCCTTAT+TGG | - | tig0033035:25857-25876 | None:intergenic | 35.0% |
| TGATTAAGCACATTCTTTCC+TGG | + | tig0033035:26282-26301 | Msa1450650:intron | 35.0% | |
| GCAAATGTATGATGATAACC+AGG | - | tig0033035:26303-26322 | None:intergenic | 35.0% | |
| ! | TGCTCTATAAGGATGCATTT+TGG | + | tig0033035:26320-26339 | Msa1450650:intron | 35.0% |
| TACTCATGAACAGAAAGCAA+GGG | - | tig0033035:26371-26390 | None:intergenic | 35.0% | |
| ! | TGTCTACATTTTCAAACAGC+TGG | - | tig0033035:26450-26469 | None:intergenic | 35.0% |
| TGACACTTAATAGAAAGCTG+CGG | + | tig0033035:26616-26635 | Msa1450650:intron | 35.0% | |
| AGCAAATAGAATGAAGGAGT+TGG | + | tig0033035:26703-26722 | Msa1450650:intron | 35.0% | |
| GCAAATAGAATGAAGGAGTT+GGG | + | tig0033035:26704-26723 | Msa1450650:intron | 35.0% | |
| !! | AGCTGGCTTTATAAATATGG+AGG | - | tig0033035:26749-26768 | None:intergenic | 35.0% |
| !! | TGACCTTTGTTATTCCAACT+AGG | - | tig0033035:26902-26921 | None:intergenic | 35.0% |
| CACTCTTTGGTTAAGTACTT+TGG | + | tig0033035:26998-27017 | Msa1450650:intron | 35.0% | |
| TCTTTGGTTAAGTACTTTGG+AGG | + | tig0033035:27001-27020 | Msa1450650:intron | 35.0% | |
| CTTTGGTTAAGTACTTTGGA+GGG | + | tig0033035:27002-27021 | Msa1450650:intron | 35.0% | |
| AAGGTTCTTCACATGATTGT+AGG | + | tig0033035:27394-27413 | Msa1450650:intron | 35.0% | |
| AGGTTCTTCACATGATTGTA+GGG | + | tig0033035:27395-27414 | Msa1450650:intron | 35.0% | |
| ! | ATGAAAAGGATTAGAGGCAT+AGG | - | tig0033035:27464-27483 | None:intergenic | 35.0% |
| ! | TTTTCTTTTTGTTGGGGAGT+AGG | + | tig0033035:27484-27503 | Msa1450650:intron | 35.0% |
| ! | TTTCTTTTTGTTGGGGAGTA+GGG | + | tig0033035:27485-27504 | Msa1450650:intron | 35.0% |
| AGAATGTGTTAATTTCCTCG+AGG | + | tig0033035:27568-27587 | Msa1450650:intron | 35.0% | |
| ATAGATATTCATCATCCTCG+AGG | - | tig0033035:27586-27605 | None:intergenic | 35.0% | |
| CATGAAAAAAAGAGGATCAC+AGG | + | tig0033035:27623-27642 | Msa1450650:intron | 35.0% | |
| ! | CAGGTATGTGTATTTTATGC+TGG | + | tig0033035:27642-27661 | Msa1450650:intron | 35.0% |
| ! | ATGTGTATTTTATGCTGGTC+TGG | + | tig0033035:27647-27666 | Msa1450650:intron | 35.0% |
| ! | TGGATGTTGTTTGTCGAAAA+TGG | + | tig0033035:27667-27686 | Msa1450650:intron | 35.0% |
| GTTGTGATCTAAAGGGAAAA+AGG | + | tig0033035:27795-27814 | Msa1450650:intron | 35.0% | |
| ATGATATCAAGCACATCACA+GGG | - | tig0033035:27850-27869 | None:intergenic | 35.0% | |
| AATGATATCAAGCACATCAC+AGG | - | tig0033035:27851-27870 | None:intergenic | 35.0% | |
| !!! | GATGACTTTTTTCAGTTTGC+CGG | + | tig0033035:27889-27908 | Msa1450650:CDS | 35.0% |
| ! | GGGCTTTTCATAAAATTCAC+CGG | + | tig0033035:27929-27948 | Msa1450650:CDS | 35.0% |
| TAAACATAGATGAGTGCTTC+TGG | + | tig0033035:28055-28074 | Msa1450650:CDS | 35.0% | |
| ACCTATGTTACGTCTTCTAA+CGG | + | tig0033035:28084-28103 | Msa1450650:CDS | 35.0% | |
| ! | AACGGATATTTTATCTCGGT+TGG | + | tig0033035:28102-28121 | Msa1450650:CDS | 35.0% |
| ! | ACGGATATTTTATCTCGGTT+GGG | + | tig0033035:28103-28122 | Msa1450650:CDS | 35.0% |
| CATATAAGGCTTGATTTCAG+AGG | - | tig0033035:28193-28212 | None:intergenic | 35.0% | |
| !! | CTCTGAAATCAAGCCTTATA+TGG | + | tig0033035:28191-28210 | Msa1450650:CDS | 35.0% |
| GTCTATCAATCTCGAAATTG+TGG | + | tig0033035:28300-28319 | Msa1450650:CDS | 35.0% | |
| ATCAATCTCGAAATTGTGGT+TGG | + | tig0033035:28304-28323 | Msa1450650:CDS | 35.0% | |
| TCAATCTCGAAATTGTGGTT+GGG | + | tig0033035:28305-28324 | Msa1450650:CDS | 35.0% | |
| TTGGGTTACTTATTCGACAA+TGG | + | tig0033035:28323-28342 | Msa1450650:CDS | 35.0% | |
| TGGGTTACTTATTCGACAAT+GGG | + | tig0033035:28324-28343 | Msa1450650:CDS | 35.0% | |
| !! | AAGGTTGAGGGTATTTCATT+GGG | - | tig0033035:28477-28496 | None:intergenic | 35.0% |
| !! | AAAGGTTGAGGGTATTTCAT+TGG | - | tig0033035:28478-28497 | None:intergenic | 35.0% |
| ATGAAATACCCTCAACCTTT+AGG | + | tig0033035:28478-28497 | Msa1450650:CDS | 35.0% | |
| TTAACCAACCTAAAGGTTGA+GGG | - | tig0033035:28489-28508 | None:intergenic | 35.0% | |
| ATTAACCAACCTAAAGGTTG+AGG | - | tig0033035:28490-28509 | None:intergenic | 35.0% | |
| AACCATGAGTTATGTCAAAC+TGG | + | tig0033035:28599-28618 | Msa1450650:CDS | 35.0% | |
| TTCCAGTTTGACATAACTCA+TGG | - | tig0033035:28604-28623 | None:intergenic | 35.0% | |
| GCAAAATGTAGTGTGTATTC+CGG | + | tig0033035:28741-28760 | Msa1450650:CDS | 35.0% | |
| CAAAATGTAGTGTGTATTCC+GGG | + | tig0033035:28742-28761 | Msa1450650:CDS | 35.0% | |
| AAAATGTAGTGTGTATTCCG+GGG | + | tig0033035:28743-28762 | Msa1450650:CDS | 35.0% | |
| CATATTCCTACACGTTTGAT+TGG | + | tig0033035:28811-28830 | Msa1450650:CDS | 35.0% | |
| AAAACACCAATCAAACGTGT+AGG | - | tig0033035:28820-28839 | None:intergenic | 35.0% | |
| ! | ATGAGGAGCATACTATTGGA+GGG | - | tig0033035:23365-23384 | None:intergenic | 40.0% |
| ! | AAGGATGAGGAGCATACTAT+TGG | - | tig0033035:23369-23388 | None:intergenic | 40.0% |
| AAGCTGGGTTTCAAGATAAG+AGG | + | tig0033035:23517-23536 | Msa1450650:CDS | 40.0% | |
| AGCTGGGTTTCAAGATAAGA+GGG | + | tig0033035:23518-23537 | Msa1450650:CDS | 40.0% | |
| AATTTACACAAGAGATGCCG+CGG | + | tig0033035:23590-23609 | Msa1450650:CDS | 40.0% | |
| TGATTTGATGTTCCTTTGGC+AGG | - | tig0033035:23674-23693 | None:intergenic | 40.0% | |
| CAAATCAAACTTGAGACCAC+TGG | + | tig0033035:23687-23706 | Msa1450650:CDS | 40.0% | |
| ! | TTGTGATGGAAAAGAACACG+AGG | + | tig0033035:23985-24004 | Msa1450650:intron | 40.0% |
| GCTGTCCGATATAGCAAATA+AGG | - | tig0033035:24318-24337 | None:intergenic | 40.0% | |
| ! | AGTGTTAGCTTGAGTCACAA+TGG | + | tig0033035:24750-24769 | Msa1450650:intron | 40.0% |
| !! | AAAATAGAAGGGCATCACCA+AGG | + | tig0033035:24880-24899 | Msa1450650:intron | 40.0% |
| TTGCAATCACATCTTAGCCT+TGG | - | tig0033035:24900-24919 | None:intergenic | 40.0% | |
| TGTACATCTGTGAAGTTAGG+TGG | - | tig0033035:24942-24961 | None:intergenic | 40.0% | |
| !!! | CATGCTTTTGGTTGATGAGA+AGG | - | tig0033035:25008-25027 | None:intergenic | 40.0% |
| TGCACCATATATGAGGTACA+CGG | + | tig0033035:25068-25087 | Msa1450650:intron | 40.0% | |
| TTGTCCGTGTACCTCATATA+TGG | - | tig0033035:25075-25094 | None:intergenic | 40.0% | |
| ACAATTTCGGCTATCTCAAG+TGG | - | tig0033035:25118-25137 | None:intergenic | 40.0% | |
| TAAATAGGGGGGGTTATTCA+TGG | - | tig0033035:25193-25212 | None:intergenic | 40.0% | |
| TTAGACATGCACTCCTAATG+AGG | + | tig0033035:25324-25343 | Msa1450650:intron | 40.0% | |
| CAGCATGCTTAATCCTCATT+AGG | - | tig0033035:25340-25359 | None:intergenic | 40.0% | |
| GCTTACATGAGATGTGGTTA+GGG | - | tig0033035:25399-25418 | None:intergenic | 40.0% | |
| TGCTTACATGAGATGTGGTT+AGG | - | tig0033035:25400-25419 | None:intergenic | 40.0% | |
| ! | CATGCAGGCCTATCTAAAAT+TGG | + | tig0033035:25418-25437 | Msa1450650:intron | 40.0% |
| TGGAAAACCAAATGCTTCCT+TGG | + | tig0033035:25438-25457 | Msa1450650:intron | 40.0% | |
| !! | TAATGAGCCAAGGAAGCATT+TGG | - | tig0033035:25448-25467 | None:intergenic | 40.0% |
| TAGGCATGCTCATTGTTGAT+TGG | - | tig0033035:25501-25520 | None:intergenic | 40.0% | |
| CATGCCTACTCATGAACAAT+TGG | + | tig0033035:25513-25532 | Msa1450650:intron | 40.0% | |
| ATCTGAATGGATGGATAGCT+TGG | + | tig0033035:25725-25744 | Msa1450650:intron | 40.0% | |
| CAACAAAACAGAATTCCGCT+TGG | + | tig0033035:25903-25922 | Msa1450650:intron | 40.0% | |
| CTACTCATGAACAGAAAGCA+AGG | - | tig0033035:26372-26391 | None:intergenic | 40.0% | |
| CTTGCTTTCTGTTCATGAGT+AGG | + | tig0033035:26370-26389 | Msa1450650:intron | 40.0% | |
| CGTTACAAAACTTGGCACAA+TGG | + | tig0033035:26564-26583 | Msa1450650:intron | 40.0% | |
| ! | GCCAGCTACATTGATTATTG+AGG | + | tig0033035:26762-26781 | Msa1450650:intron | 40.0% |
| GCCTCAATAATCAATGTAGC+TGG | - | tig0033035:26766-26785 | None:intergenic | 40.0% | |
| ACGCCTAGTTGGAATAACAA+AGG | + | tig0033035:26896-26915 | Msa1450650:intron | 40.0% | |
| AAAGGTCACATGTGCTCATT+AGG | + | tig0033035:26914-26933 | Msa1450650:intron | 40.0% | |
| ! | AGAGTGCTTTGCAAGCTAAT+GGG | - | tig0033035:26984-27003 | None:intergenic | 40.0% |
| !! | AAGAGTGCTTTGCAAGCTAA+TGG | - | tig0033035:26985-27004 | None:intergenic | 40.0% |
| !! | TTAGCTTGCAAAGCACTCTT+TGG | + | tig0033035:26985-27004 | Msa1450650:intron | 40.0% |
| GGTTCTTCACATGATTGTAG+GGG | + | tig0033035:27396-27415 | Msa1450650:intron | 40.0% | |
| ATGATTGTAGGGGAATTGCA+TGG | + | tig0033035:27406-27425 | Msa1450650:intron | 40.0% | |
| ! | TTCTTTTTGTTGGGGAGTAG+GGG | + | tig0033035:27486-27505 | Msa1450650:intron | 40.0% |
| GCGATGCCAAAAAATTTCTC+CGG | - | tig0033035:27951-27970 | None:intergenic | 40.0% | |
| TCCGTTAGAAGACGTAACAT+AGG | - | tig0033035:28088-28107 | None:intergenic | 40.0% | |
| GCACGGTTAAGATCCATATA+AGG | - | tig0033035:28207-28226 | None:intergenic | 40.0% | |
| ATATGGATCTTAACCGTGCT+TGG | + | tig0033035:28208-28227 | Msa1450650:CDS | 40.0% | |
| ! | TGCTTTTGACAAATGCTCTG+AGG | + | tig0033035:28233-28252 | Msa1450650:CDS | 40.0% |
| ! | CTCTGAGGAATTTGTCTTGA+TGG | + | tig0033035:28248-28267 | Msa1450650:CDS | 40.0% |
| TGATAGACATGCAAGATCTC+AGG | - | tig0033035:28288-28307 | None:intergenic | 40.0% | |
| AATACCCTCAACCTTTAGGT+TGG | + | tig0033035:28482-28501 | Msa1450650:CDS | 40.0% | |
| TAAGGGATGTGTACAGGATA+AGG | + | tig0033035:28553-28572 | Msa1450650:CDS | 40.0% | |
| AAGGGATGTGTACAGGATAA+GGG | + | tig0033035:28554-28573 | Msa1450650:CDS | 40.0% | |
| ATTGAGCAACCCGAATAAGT+GGG | + | tig0033035:28674-28693 | Msa1450650:CDS | 40.0% | |
| TCTCATATCCCCACTTATTC+GGG | - | tig0033035:28686-28705 | None:intergenic | 40.0% | |
| CTCTCATATCCCCACTTATT+CGG | - | tig0033035:28687-28706 | None:intergenic | 40.0% | |
| TATTTGCACAGTTCGCCGTA+AGG | - | tig0033035:23335-23354 | None:intergenic | 45.0% | |
| ! | TGAGGAGCATACTATTGGAG+GGG | - | tig0033035:23364-23383 | None:intergenic | 45.0% |
| ! | GATGAGGAGCATACTATTGG+AGG | - | tig0033035:23366-23385 | None:intergenic | 45.0% |
| !!! | ACGCATCATCGCGGTTTTTT+GGG | - | tig0033035:23482-23501 | None:intergenic | 45.0% |
| !!! | AACGCATCATCGCGGTTTTT+TGG | - | tig0033035:23483-23502 | None:intergenic | 45.0% |
| AAAAAACCGCGATGATGCGT+TGG | + | tig0033035:23482-23501 | Msa1450650:CDS | 45.0% | |
| GCTGGGTTTCAAGATAAGAG+GGG | + | tig0033035:23519-23538 | Msa1450650:CDS | 45.0% | |
| AGAGTCAAGCAGCTGCTTAA+AGG | + | tig0033035:23615-23634 | Msa1450650:CDS | 45.0% | |
| GAGTCAAGCAGCTGCTTAAA+GGG | + | tig0033035:23616-23635 | Msa1450650:CDS | 45.0% | |
| ATTCAACACCTTCCTGCCAA+AGG | + | tig0033035:23659-23678 | Msa1450650:CDS | 45.0% | |
| TTGATGTTCCTTTGGCAGGA+AGG | - | tig0033035:23670-23689 | None:intergenic | 45.0% | |
| GTCTGTGTTAAAACCCTAGC+CGG | + | tig0033035:23817-23836 | Msa1450650:intron | 45.0% | |
| AACAAAAGTCAAGACGACGC+CGG | - | tig0033035:23839-23858 | None:intergenic | 45.0% | |
| ! | TTTGCTATATCGGACAGCCA+AGG | + | tig0033035:24320-24339 | Msa1450650:intron | 45.0% |
| TTGCTATATCGGACAGCCAA+GGG | + | tig0033035:24321-24340 | Msa1450650:intron | 45.0% | |
| TTCGTCCTTCACAAAGCACA+TGG | + | tig0033035:24496-24515 | Msa1450650:intron | 45.0% | |
| TTCCTCCTTCACAAAGCACA+TGG | + | tig0033035:24547-24566 | Msa1450650:intron | 45.0% | |
| ATCGTCCATGTGCTTTGTGA+AGG | - | tig0033035:24555-24574 | None:intergenic | 45.0% | |
| CTGCATGCTTACATGAGATG+TGG | - | tig0033035:25405-25424 | None:intergenic | 45.0% | |
| CACATCTCATGTAAGCATGC+AGG | + | tig0033035:25403-25422 | Msa1450650:intron | 45.0% | |
| GATTGGCAGTTGAGACCATT+GGG | - | tig0033035:25484-25503 | None:intergenic | 45.0% | |
| TGATTGGCAGTTGAGACCAT+TGG | - | tig0033035:25485-25504 | None:intergenic | 45.0% | |
| TGGAGCAGCCCTCAATAATT+TGG | + | tig0033035:25745-25764 | Msa1450650:intron | 45.0% | |
| GGAGCAGCCCTCAATAATTT+GGG | + | tig0033035:25746-25765 | Msa1450650:intron | 45.0% | |
| TGCGCCACCCAAATTATTGA+GGG | - | tig0033035:25756-25775 | None:intergenic | 45.0% | |
| ATGCGCCACCCAAATTATTG+AGG | - | tig0033035:25757-25776 | None:intergenic | 45.0% | |
| TGGCGCATGCTTATATGCAT+GGG | + | tig0033035:25769-25788 | Msa1450650:intron | 45.0% | |
| CATGTGGTGTATAGTCCAAG+CGG | - | tig0033035:25921-25940 | None:intergenic | 45.0% | |
| GTCACATGTGCTCATTAGGA+GGG | + | tig0033035:26918-26937 | Msa1450650:intron | 45.0% | |
| ACTCGTTAAATGCTGGTGCA+TGG | - | tig0033035:26960-26979 | None:intergenic | 45.0% | |
| AATGGGGACTCGTTAAATGC+TGG | - | tig0033035:26967-26986 | None:intergenic | 45.0% | |
| GAGTGCTTTGCAAGCTAATG+GGG | - | tig0033035:26983-27002 | None:intergenic | 45.0% | |
| ! | TGTTCAAGAGAGTGTGAGAG+GGG | - | tig0033035:27252-27271 | None:intergenic | 45.0% |
| ! | GTGTTCAAGAGAGTGTGAGA+GGG | - | tig0033035:27253-27272 | None:intergenic | 45.0% |
| ! | AGTGTTCAAGAGAGTGTGAG+AGG | - | tig0033035:27254-27273 | None:intergenic | 45.0% |
| ! | CGAGACACATGTTGCTTCTT+TGG | + | tig0033035:27336-27355 | Msa1450650:intron | 45.0% |
| TTGGTCGGGTATGCTGATAA+AGG | - | tig0033035:28019-28038 | None:intergenic | 45.0% | |
| TGTCAAAAGCAAGCCAAGCA+CGG | - | tig0033035:28224-28243 | None:intergenic | 45.0% | |
| AGTAAGAGTTGTTGACGCTG+TGG | + | tig0033035:28353-28372 | Msa1450650:CDS | 45.0% | |
| TCACTTTCGAGGGCAACATA+GGG | + | tig0033035:28400-28419 | Msa1450650:CDS | 45.0% | |
| CATTGAGCAACCCGAATAAG+TGG | + | tig0033035:28673-28692 | Msa1450650:CDS | 45.0% | |
| TTGAGCAACCCGAATAAGTG+GGG | + | tig0033035:28675-28694 | Msa1450650:CDS | 45.0% | |
| TGCATTATGCTTCCAGCTCA+TGG | + | tig0033035:28786-28805 | Msa1450650:CDS | 45.0% | |
| TAGGAATATGCTCCATGAGC+TGG | - | tig0033035:28801-28820 | None:intergenic | 45.0% | |
| CCGTAAGGATACGGAGGAAA+GGG | - | tig0033035:23320-23339 | None:intergenic | 50.0% | |
| CCCTTTCCTCCGTATCCTTA+CGG | + | tig0033035:23317-23336 | Msa1450650:five_prime_UTR | 50.0% | |
| CACAGTTCGCCGTAAGGATA+CGG | - | tig0033035:23329-23348 | None:intergenic | 50.0% | |
| TTGGCAGCGATTGTACAAGC+TGG | + | tig0033035:23501-23520 | Msa1450650:CDS | 50.0% | |
| TGGCAGCGATTGTACAAGCT+GGG | + | tig0033035:23502-23521 | Msa1450650:CDS | 50.0% | |
| ! | GGCGTCGTCTTGACTTTTGT+TGG | + | tig0033035:23838-23857 | Msa1450650:intron | 50.0% |
| GGTGTCCATGTGCTTTGTGA+AGG | - | tig0033035:24504-24523 | None:intergenic | 50.0% | |
| GTCCATGTGCTTTGTGAAGG+AGG | - | tig0033035:24501-24520 | None:intergenic | 50.0% | |
| GGCTATCTCAAGTGGCAAGA+AGG | - | tig0033035:25110-25129 | None:intergenic | 50.0% | |
| GGCTGCACACTCTAATTGCT+TGG | - | tig0033035:25656-25675 | None:intergenic | 50.0% | |
| GCAGCCCTCAATAATTTGGG+TGG | + | tig0033035:25749-25768 | Msa1450650:intron | 50.0% | |
| GTGGCGCATGCTTATATGCA+TGG | + | tig0033035:25768-25787 | Msa1450650:intron | 50.0% | |
| GGCGCATGCTTATATGCATG+GGG | + | tig0033035:25770-25789 | Msa1450650:intron | 50.0% | |
| TGGGCATACTTGCATGCGTA+TGG | + | tig0033035:26723-26742 | Msa1450650:intron | 50.0% | |
| GCTTATTGGACACGCCTAGT+TGG | + | tig0033035:26885-26904 | Msa1450650:intron | 50.0% | |
| GGTCACATGTGCTCATTAGG+AGG | + | tig0033035:26917-26936 | Msa1450650:intron | 50.0% | |
| GCACATCACAGGGAAGTTCA+CGG | - | tig0033035:27840-27859 | None:intergenic | 50.0% | |
| TTGCCGGTGTGTGCAAGAAT+TGG | + | tig0033035:27905-27924 | Msa1450650:CDS | 50.0% | |
| CCTCCAATTCTTGCACACAC+CGG | - | tig0033035:27911-27930 | None:intergenic | 50.0% | |
| CGGTGTGTGCAAGAATTGGA+GGG | + | tig0033035:27909-27928 | Msa1450650:CDS | 50.0% | |
| ! | GTCACTTTCGAGGGCAACAT+AGG | + | tig0033035:28399-28418 | Msa1450650:CDS | 50.0% |
| CACTTTCGAGGGCAACATAG+GGG | + | tig0033035:28401-28420 | Msa1450650:CDS | 50.0% | |
| GCCGTAAGGATACGGAGGAA+AGG | - | tig0033035:23321-23340 | None:intergenic | 55.0% | |
| AGTTCGCCGTAAGGATACGG+AGG | - | tig0033035:23326-23345 | None:intergenic | 55.0% | |
| GAGCATACTATTGGAGGGGC+AGG | - | tig0033035:23360-23379 | None:intergenic | 55.0% | |
| ACTAGCTGGTATGACCCGTG+CGG | - | tig0033035:24265-24284 | None:intergenic | 55.0% | |
| CCGGTGTGTGCAAGAATTGG+AGG | + | tig0033035:27908-27927 | Msa1450650:CDS | 55.0% | |
| TCGCTGCCAACGCATCATCG+CGG | - | tig0033035:23491-23510 | None:intergenic | 60.0% | |
| CAGCTGCTTGACTCTTGCCG+CGG | - | tig0033035:23610-23629 | None:intergenic | 60.0% | |
| ! | AGTCAAGACGACGCCGGCTA+GGG | - | tig0033035:23833-23852 | None:intergenic | 60.0% |
| ! | AAGTCAAGACGACGCCGGCT+AGG | - | tig0033035:23834-23853 | None:intergenic | 60.0% |
| TATGACCCGTGCGGAGCACA+CGG | - | tig0033035:24256-24275 | None:intergenic | 60.0% | |
| ATCGACCCGTGTGCTCCGCA+CGG | + | tig0033035:24247-24266 | Msa1450650:intron | 65.0% | |
| ATGACCCGTGCGGAGCACAC+GGG | - | tig0033035:24255-24274 | None:intergenic | 65.0% | |
| GTGCGGAGCACACGGGTCGA+TGG | - | tig0033035:24248-24267 | None:intergenic | 70.0% | |
| TCGACCCGTGTGCTCCGCAC+GGG | + | tig0033035:24248-24267 | Msa1450650:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0033035 | gene | 23284 | 28881 | 23284 | ID=Msa1450650;Name=Msa1450650 |
| tig0033035 | mRNA | 23284 | 28881 | 23284 | ID=Msa1450650-mRNA-1;Parent=Msa1450650;Name=Msa1450650-mRNA-1;_AED=0.25;_eAED=0.25;_QI=88|0.5|0.66|1|0.5|0.66|3|0|436 |
| tig0033035 | exon | 23284 | 23371 | 23284 | ID=Msa1450650-mRNA-1:exon:17576;Parent=Msa1450650-mRNA-1 |
| tig0033035 | exon | 23471 | 23708 | 23471 | ID=Msa1450650-mRNA-1:exon:17577;Parent=Msa1450650-mRNA-1 |
| tig0033035 | exon | 27809 | 28881 | 27809 | ID=Msa1450650-mRNA-1:exon:17578;Parent=Msa1450650-mRNA-1 |
| tig0033035 | five_prime_UTR | 23284 | 23371 | 23284 | ID=Msa1450650-mRNA-1:five_prime_utr;Parent=Msa1450650-mRNA-1 |
| tig0033035 | CDS | 23471 | 23708 | 23471 | ID=Msa1450650-mRNA-1:cds;Parent=Msa1450650-mRNA-1 |
| tig0033035 | CDS | 27809 | 28881 | 27809 | ID=Msa1450650-mRNA-1:cds;Parent=Msa1450650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
