Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451090 | sp|Q500W4|PLI2C_ARATH | 54.930 | 213 | 87 | 3 | 2 | 210 | 3 | 210 | 2.73e-78 | 236 |
| Msa1451090 | sp|Q500W4|PLI2C_ARATH | 53.425 | 73 | 34 | 0 | 93 | 165 | 2 | 74 | 1.33e-20 | 89.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451090 | A0A072U5A9 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 2.68e-151 | 427 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1451090 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451090 | MtrunA17_Chr8g0386501 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 5.17e-155 | 427 |
| Msa1451090 | MtrunA17_Chr3g0113051 | 60.656 | 183 | 64 | 1 | 1 | 175 | 1 | 183 | 2.74e-76 | 228 |
| Msa1451090 | MtrunA17_Chr8g0349391 | 59.538 | 173 | 68 | 1 | 1 | 171 | 1 | 173 | 8.41e-74 | 222 |
| Msa1451090 | MtrunA17_Chr7g0247111 | 53.302 | 212 | 95 | 2 | 1 | 208 | 1 | 212 | 8.41e-73 | 219 |
| Msa1451090 | MtrunA17_Chr1g0152431 | 55.367 | 177 | 67 | 4 | 1 | 167 | 1 | 175 | 1.68e-61 | 190 |
| Msa1451090 | MtrunA17_Chr4g0059371 | 52.000 | 175 | 77 | 2 | 2 | 169 | 3 | 177 | 4.95e-61 | 188 |
| Msa1451090 | MtrunA17_Chr4g0059371 | 50.704 | 71 | 35 | 0 | 93 | 163 | 2 | 72 | 3.28e-18 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451090 | AT3G61230.1 | 54.930 | 213 | 87 | 3 | 2 | 210 | 3 | 210 | 2.77e-79 | 236 |
| Msa1451090 | AT3G61230.1 | 53.425 | 73 | 34 | 0 | 93 | 165 | 2 | 74 | 1.35e-21 | 89.0 |
| Msa1451090 | AT2G45800.1 | 56.250 | 208 | 85 | 3 | 1 | 202 | 1 | 208 | 1.80e-77 | 232 |
| Msa1451090 | AT2G39900.1 | 61.538 | 182 | 63 | 2 | 1 | 175 | 1 | 182 | 4.22e-77 | 230 |
| Msa1451090 | AT3G55770.3 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.69e-75 | 226 |
| Msa1451090 | AT3G55770.5 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.69e-75 | 226 |
| Msa1451090 | AT3G55770.2 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.69e-75 | 226 |
| Msa1451090 | AT3G55770.1 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.69e-75 | 226 |
| Msa1451090 | AT1G01780.1 | 53.659 | 205 | 88 | 2 | 1 | 203 | 1 | 200 | 3.38e-74 | 223 |
| Msa1451090 | AT3G55770.7 | 48.927 | 233 | 79 | 2 | 1 | 193 | 1 | 233 | 5.59e-68 | 208 |
| Msa1451090 | AT1G10200.1 | 54.802 | 177 | 68 | 4 | 1 | 167 | 1 | 175 | 1.68e-61 | 190 |
| Msa1451090 | AT2G45800.2 | 54.217 | 166 | 70 | 3 | 43 | 202 | 12 | 177 | 3.71e-53 | 169 |
| Msa1451090 | AT2G45800.2 | 48.438 | 64 | 33 | 0 | 3 | 66 | 68 | 131 | 5.50e-15 | 70.9 |
| Msa1451090 | AT3G55770.4 | 53.906 | 128 | 53 | 1 | 1 | 122 | 1 | 128 | 4.31e-42 | 139 |
| Msa1451090 | AT3G55770.4 | 46.392 | 97 | 41 | 1 | 95 | 191 | 3 | 88 | 3.04e-23 | 91.3 |
| Msa1451090 | AT3G55770.6 | 54.098 | 122 | 50 | 1 | 1 | 116 | 1 | 122 | 4.15e-39 | 131 |
| Msa1451090 | AT3G55770.6 | 46.392 | 97 | 41 | 1 | 95 | 191 | 3 | 88 | 2.28e-23 | 91.3 |
| Msa1451090 | AT1G10200.2 | 51.145 | 131 | 54 | 3 | 46 | 167 | 4 | 133 | 1.36e-37 | 128 |
| Msa1451090 | AT1G10200.2 | 45.455 | 66 | 36 | 0 | 3 | 68 | 61 | 126 | 7.70e-15 | 69.3 |
Find 47 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCTATGCTGCTCTTGA+TGG | 0.220465 | tig0033204:-2080 | Msa1451090:CDS |
| ATTACCCGTCTGGGGTTTCT+TGG | 0.257758 | tig0033204:+2833 | None:intergenic |
| AAACTTTCTGCTTTCTTCTC+AGG | 0.328680 | tig0033204:-2547 | Msa1451090:CDS |
| TTTACCACAAGTCATGCTTT+AGG | 0.384207 | tig0033204:-2133 | Msa1451090:CDS |
| CACAAGCCTTGCATTTCTGT+TGG | 0.387121 | tig0033204:+3461 | None:intergenic |
| AAAGGATCTTATTACCCGTC+TGG | 0.392398 | tig0033204:+2823 | None:intergenic |
| ACAAGCCTTGCATTTCTGTT+GGG | 0.412168 | tig0033204:+3462 | None:intergenic |
| TCTGTCTCTGTGTCTGATGC+TGG | 0.438805 | tig0033204:+1924 | None:intergenic |
| TCTCAGTTGTTTAAGGCAAA+AGG | 0.442224 | tig0033204:-2032 | Msa1451090:CDS |
| AAGGATCTTATTACCCGTCT+GGG | 0.445643 | tig0033204:+2824 | None:intergenic |
| ACCCGTCTGGGGTTTCTTGG+AGG | 0.447284 | tig0033204:+2836 | None:intergenic |
| AGAAAGCAGAAAGTTTGCTT+GGG | 0.452697 | tig0033204:+2554 | None:intergenic |
| GAAAGTTTGCTTGGGGCCCT+AGG | 0.452962 | tig0033204:+2562 | None:intergenic |
| AGCAGGAAAGCCTAGTGAAC+TGG | 0.468952 | tig0033204:-2695 | Msa1451090:intron |
| AACTTTCTGCTTTCTTCTCA+GGG | 0.473345 | tig0033204:-2546 | Msa1451090:CDS |
| TCAATAACCATGTCTTTCAC+TGG | 0.477166 | tig0033204:-3487 | None:intergenic |
| CAAGAAAACTGTATATCCAT+TGG | 0.479463 | tig0033204:-2500 | Msa1451090:CDS |
| AAGAAAGCAGAAAGTTTGCT+TGG | 0.480734 | tig0033204:+2553 | None:intergenic |
| AACTGTATATCCATTGGAAA+AGG | 0.494668 | tig0033204:-2494 | Msa1451090:intron |
| TCAAGAGCAGCATAGGATGA+AGG | 0.519729 | tig0033204:+2083 | None:intergenic |
| CTGGGGTTTCTTGGAGGCGA+AGG | 0.523891 | tig0033204:+2842 | None:intergenic |
| CTTAAACAACTGAGAAAAGT+GGG | 0.527258 | tig0033204:+2040 | None:intergenic |
| GAATCCATCAAGAGCAGCAT+AGG | 0.537698 | tig0033204:+2076 | None:intergenic |
| GTTGATACGTTATCTGCTGA+TGG | 0.547689 | tig0033204:-3421 | Msa1451090:CDS |
| AGAATACACACCAGTTCACT+AGG | 0.547764 | tig0033204:+2685 | None:intergenic |
| CCTTAAACAACTGAGAAAAG+TGG | 0.548044 | tig0033204:+2039 | None:intergenic |
| TCATGCTTTAGGTGCACACA+TGG | 0.562402 | tig0033204:-2122 | Msa1451090:CDS |
| TACACCTCTTGTGTAACAGC+AGG | 0.567186 | tig0033204:+1882 | None:intergenic |
| CAAGAGCAGCATAGGATGAA+GGG | 0.580724 | tig0033204:+2084 | None:intergenic |
| TTGTGATAAAACTGTTCACT+TGG | 0.580761 | tig0033204:-3443 | Msa1451090:CDS |
| GCCTCCAAGAAACCCCAGAC+GGG | 0.596184 | tig0033204:-2837 | Msa1451090:intron |
| TGATCCTGCTGTTACACAAG+AGG | 0.603788 | tig0033204:-1886 | Msa1451090:CDS |
| AGACACAGAGACAGAGACAA+AGG | 0.606794 | tig0033204:-1916 | Msa1451090:CDS |
| CGCCTCCAAGAAACCCCAGA+CGG | 0.608247 | tig0033204:-2838 | Msa1451090:CDS |
| AGTAACTATCAATCAATCGA+AGG | 0.610154 | tig0033204:-2909 | Msa1451090:CDS |
| TTCAGATGTAATCAATGCAA+TGG | 0.611041 | tig0033204:-3376 | Msa1451090:CDS |
| CGTATGTATATACCGCGAGA+AGG | 0.635292 | tig0033204:+3353 | None:intergenic |
| TTATGACAGTTGACAGTGGA+AGG | 0.635630 | tig0033204:-2161 | Msa1451090:intron |
| AGGATCTTATTACCCGTCTG+GGG | 0.640198 | tig0033204:+2825 | None:intergenic |
| GAAAGCAGAAAGTTTGCTTG+GGG | 0.651424 | tig0033204:+2555 | None:intergenic |
| TGGAACCCAACAGAAATGCA+AGG | 0.666590 | tig0033204:-3467 | Msa1451090:CDS |
| TGCTTTAGGTGCACACATGG+AGG | 0.676247 | tig0033204:-2119 | Msa1451090:CDS |
| CTGTTTATGACAGTTGACAG+TGG | 0.680767 | tig0033204:-2165 | Msa1451090:intron |
| TTAAACAACTGAGAAAAGTG+GGG | 0.688189 | tig0033204:+2041 | None:intergenic |
| TTGGGTTCCAGTGAAAGACA+TGG | 0.695332 | tig0033204:+3480 | None:intergenic |
| TCAATGCAATGGCCTTCTCG+CGG | 0.702963 | tig0033204:-3365 | Msa1451090:intron |
| TGCACCTAAAGCATGACTTG+TGG | 0.763367 | tig0033204:+2129 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATCAAAGA+TGG | - | tig0033204:2093-2112 | Msa1451090:CDS | 10.0% |
| !! | TATATATATATATCAAAGAT+GGG | - | tig0033204:2094-2113 | Msa1451090:CDS | 10.0% |
| !!! | TTATCTATGTTTAATTTTTT+TGG | - | tig0033204:2233-2252 | Msa1451090:intron | 10.0% |
| !! | AAATTCCTATTATTATAATT+TGG | + | tig0033204:2584-2603 | None:intergenic | 10.0% |
| !! | ATATATATATATATCAAAGA+TGG | - | tig0033204:2093-2112 | Msa1451090:CDS | 10.0% |
| !! | TATATATATATATCAAAGAT+GGG | - | tig0033204:2094-2113 | Msa1451090:CDS | 10.0% |
| !!! | TTATCTATGTTTAATTTTTT+TGG | - | tig0033204:2233-2252 | Msa1451090:intron | 10.0% |
| !! | AAATTCCTATTATTATAATT+TGG | + | tig0033204:2584-2603 | None:intergenic | 10.0% |
| !!! | ATTTTTACAAGTAAAAGTTT+AGG | + | tig0033204:2366-2385 | None:intergenic | 15.0% |
| !! | ATCACTAATAATAACATAAA+TGG | - | tig0033204:2407-2426 | Msa1451090:intron | 15.0% |
| !! | GACAAGTATATAAAAAAAAA+AGG | + | tig0033204:2557-2576 | None:intergenic | 15.0% |
| !! | CTATACCAAATTATAATAAT+AGG | - | tig0033204:2576-2595 | Msa1451090:intron | 15.0% |
| !! | ATATATATGATCAGAAAAAA+GGG | + | tig0033204:2980-2999 | None:intergenic | 15.0% |
| !! | TATATATATGATCAGAAAAA+AGG | + | tig0033204:2981-3000 | None:intergenic | 15.0% |
| !!! | ATTTTTACAAGTAAAAGTTT+AGG | + | tig0033204:2366-2385 | None:intergenic | 15.0% |
| !! | ATCACTAATAATAACATAAA+TGG | - | tig0033204:2407-2426 | Msa1451090:intron | 15.0% |
| !! | GACAAGTATATAAAAAAAAA+AGG | + | tig0033204:2557-2576 | None:intergenic | 15.0% |
| !! | CTATACCAAATTATAATAAT+AGG | - | tig0033204:2576-2595 | Msa1451090:intron | 15.0% |
| !! | ATATATATGATCAGAAAAAA+GGG | + | tig0033204:2980-2999 | None:intergenic | 15.0% |
| !! | TATATATATGATCAGAAAAA+AGG | + | tig0033204:2981-3000 | None:intergenic | 15.0% |
| !! | TATATATAGAACATAAACGA+GGG | + | tig0033204:2080-2099 | None:intergenic | 20.0% |
| !! | ATATATATAGAACATAAACG+AGG | + | tig0033204:2081-2100 | None:intergenic | 20.0% |
| !! | TTTATGAAACACAAAATGAT+AGG | - | tig0033204:2147-2166 | Msa1451090:CDS | 20.0% |
| !! | TTATGAAACACAAAATGATA+GGG | - | tig0033204:2148-2167 | Msa1451090:CDS | 20.0% |
| !!! | ATTGGAAAAGGTATATATTT+GGG | - | tig0033204:2877-2896 | Msa1451090:CDS | 20.0% |
| !!! | ATATAGTTCTATTGTTTTAG+TGG | + | tig0033204:2924-2943 | None:intergenic | 20.0% |
| !! | TATATATAGAACATAAACGA+GGG | + | tig0033204:2080-2099 | None:intergenic | 20.0% |
| !! | ATATATATAGAACATAAACG+AGG | + | tig0033204:2081-2100 | None:intergenic | 20.0% |
| !! | TTTATGAAACACAAAATGAT+AGG | - | tig0033204:2147-2166 | Msa1451090:CDS | 20.0% |
| !! | TTATGAAACACAAAATGATA+GGG | - | tig0033204:2148-2167 | Msa1451090:CDS | 20.0% |
| !!! | ATTGGAAAAGGTATATATTT+GGG | - | tig0033204:2877-2896 | Msa1451090:CDS | 20.0% |
| !!! | ATATAGTTCTATTGTTTTAG+TGG | + | tig0033204:2924-2943 | None:intergenic | 20.0% |
| !!! | ACGTATCTTAATTTGTTTTC+TGG | - | tig0033204:2026-2045 | Msa1451090:CDS | 25.0% |
| !!! | ACCAATTTGTTTTTGCTATA+TGG | - | tig0033204:2053-2072 | Msa1451090:CDS | 25.0% |
| ! | ACCATATAGCAAAAACAAAT+TGG | + | tig0033204:2057-2076 | None:intergenic | 25.0% |
| !! | CAAATATATACCTTTTCCAA+TGG | + | tig0033204:2878-2897 | None:intergenic | 25.0% |
| !! | CATTGGAAAAGGTATATATT+TGG | - | tig0033204:2876-2895 | Msa1451090:CDS | 25.0% |
| ! | ACTATATAATCAAACAATGC+TGG | - | tig0033204:2937-2956 | Msa1451090:intron | 25.0% |
| !!! | ACGTATCTTAATTTGTTTTC+TGG | - | tig0033204:2026-2045 | Msa1451090:CDS | 25.0% |
| !!! | ACCAATTTGTTTTTGCTATA+TGG | - | tig0033204:2053-2072 | Msa1451090:CDS | 25.0% |
| ! | ACCATATAGCAAAAACAAAT+TGG | + | tig0033204:2057-2076 | None:intergenic | 25.0% |
| !! | CAAATATATACCTTTTCCAA+TGG | + | tig0033204:2878-2897 | None:intergenic | 25.0% |
| !! | CATTGGAAAAGGTATATATT+TGG | - | tig0033204:2876-2895 | Msa1451090:CDS | 25.0% |
| ! | ACTATATAATCAAACAATGC+TGG | - | tig0033204:2937-2956 | Msa1451090:intron | 25.0% |
| TTGTGATAAAACTGTTCACT+TGG | - | tig0033204:1916-1935 | Msa1451090:CDS | 30.0% | |
| TTCAGATGTAATCAATGCAA+TGG | - | tig0033204:1983-2002 | Msa1451090:CDS | 30.0% | |
| TTGCATAATCATAAACGACA+TGG | - | tig0033204:2294-2313 | Msa1451090:intron | 30.0% | |
| TGCATAATCATAAACGACAT+GGG | - | tig0033204:2295-2314 | Msa1451090:intron | 30.0% | |
| ! | GACAGTATAAGTACTTTTCT+AGG | - | tig0033204:2323-2342 | Msa1451090:intron | 30.0% |
| ! | TTTAGGTGAGTTGAATATGT+TGG | + | tig0033204:2349-2368 | None:intergenic | 30.0% |
| AGTAACTATCAATCAATCGA+AGG | - | tig0033204:2450-2469 | Msa1451090:intron | 30.0% | |
| !!! | AGGAATTTATGTGCTGTTTT+TGG | - | tig0033204:2596-2615 | Msa1451090:intron | 30.0% |
| !!! | GGAATTTATGTGCTGTTTTT+GGG | - | tig0033204:2597-2616 | Msa1451090:intron | 30.0% |
| !!! | GAATTTATGTGCTGTTTTTG+GGG | - | tig0033204:2598-2617 | Msa1451090:intron | 30.0% |
| ! | TTTCATGATTTTCAAACAGC+AGG | - | tig0033204:2647-2666 | Msa1451090:intron | 30.0% |
| TTTCATATGTTTACAGCCTA+GGG | - | tig0033204:2781-2800 | Msa1451090:intron | 30.0% | |
| CAAGAAAACTGTATATCCAT+TGG | - | tig0033204:2859-2878 | Msa1451090:CDS | 30.0% | |
| AACTGTATATCCATTGGAAA+AGG | - | tig0033204:2865-2884 | Msa1451090:CDS | 30.0% | |
| TATATATACTCCAACAATGC+TGG | - | tig0033204:2993-3012 | Msa1451090:intron | 30.0% | |
| GTATAAAATGTCACAATGTC+TGG | - | tig0033204:3121-3140 | Msa1451090:intron | 30.0% | |
| TTAAACAACTGAGAAAAGTG+GGG | + | tig0033204:3321-3340 | None:intergenic | 30.0% | |
| CTTAAACAACTGAGAAAAGT+GGG | + | tig0033204:3322-3341 | None:intergenic | 30.0% | |
| TTGTGATAAAACTGTTCACT+TGG | - | tig0033204:1916-1935 | Msa1451090:CDS | 30.0% | |
| TTCAGATGTAATCAATGCAA+TGG | - | tig0033204:1983-2002 | Msa1451090:CDS | 30.0% | |
| TTGCATAATCATAAACGACA+TGG | - | tig0033204:2294-2313 | Msa1451090:intron | 30.0% | |
| TGCATAATCATAAACGACAT+GGG | - | tig0033204:2295-2314 | Msa1451090:intron | 30.0% | |
| ! | GACAGTATAAGTACTTTTCT+AGG | - | tig0033204:2323-2342 | Msa1451090:intron | 30.0% |
| ! | TTTAGGTGAGTTGAATATGT+TGG | + | tig0033204:2349-2368 | None:intergenic | 30.0% |
| AGTAACTATCAATCAATCGA+AGG | - | tig0033204:2450-2469 | Msa1451090:intron | 30.0% | |
| !!! | AGGAATTTATGTGCTGTTTT+TGG | - | tig0033204:2596-2615 | Msa1451090:intron | 30.0% |
| !!! | GGAATTTATGTGCTGTTTTT+GGG | - | tig0033204:2597-2616 | Msa1451090:intron | 30.0% |
| !!! | GAATTTATGTGCTGTTTTTG+GGG | - | tig0033204:2598-2617 | Msa1451090:intron | 30.0% |
| ! | TTTCATGATTTTCAAACAGC+AGG | - | tig0033204:2647-2666 | Msa1451090:intron | 30.0% |
| TTTCATATGTTTACAGCCTA+GGG | - | tig0033204:2781-2800 | Msa1451090:intron | 30.0% | |
| CAAGAAAACTGTATATCCAT+TGG | - | tig0033204:2859-2878 | Msa1451090:CDS | 30.0% | |
| AACTGTATATCCATTGGAAA+AGG | - | tig0033204:2865-2884 | Msa1451090:CDS | 30.0% | |
| TATATATACTCCAACAATGC+TGG | - | tig0033204:2993-3012 | Msa1451090:intron | 30.0% | |
| GTATAAAATGTCACAATGTC+TGG | - | tig0033204:3121-3140 | Msa1451090:intron | 30.0% | |
| TTAAACAACTGAGAAAAGTG+GGG | + | tig0033204:3321-3340 | None:intergenic | 30.0% | |
| CTTAAACAACTGAGAAAAGT+GGG | + | tig0033204:3322-3341 | None:intergenic | 30.0% | |
| ATGGGTCAAATTGCATCTAA+AGG | - | tig0033204:2112-2131 | Msa1451090:CDS | 35.0% | |
| TACTCTCGATGATCTTAAGA+AGG | - | tig0033204:2268-2287 | Msa1451090:intron | 35.0% | |
| CTTTCATATGTTTACAGCCT+AGG | - | tig0033204:2780-2799 | Msa1451090:intron | 35.0% | |
| ! | AGAAAGCAGAAAGTTTGCTT+GGG | + | tig0033204:2808-2827 | None:intergenic | 35.0% |
| ! | AAGAAAGCAGAAAGTTTGCT+TGG | + | tig0033204:2809-2828 | None:intergenic | 35.0% |
| AAACTTTCTGCTTTCTTCTC+AGG | - | tig0033204:2812-2831 | Msa1451090:intron | 35.0% | |
| AACTTTCTGCTTTCTTCTCA+GGG | - | tig0033204:2813-2832 | Msa1451090:intron | 35.0% | |
| GGAAACGGGTGTATTATATA+CGG | + | tig0033204:3054-3073 | None:intergenic | 35.0% | |
| GTATATAATACACCCGTTTC+CGG | - | tig0033204:3053-3072 | Msa1451090:intron | 35.0% | |
| TAATCTAAACACACCGGAAA+CGG | + | tig0033204:3069-3088 | None:intergenic | 35.0% | |
| TCCTCATAATCTAAACACAC+CGG | + | tig0033204:3075-3094 | None:intergenic | 35.0% | |
| TTTACCACAAGTCATGCTTT+AGG | - | tig0033204:3226-3245 | Msa1451090:intron | 35.0% | |
| CCTTAAACAACTGAGAAAAG+TGG | + | tig0033204:3323-3342 | None:intergenic | 35.0% | |
| !! | CCACTTTTCTCAGTTGTTTA+AGG | - | tig0033204:3320-3339 | Msa1451090:intron | 35.0% |
| ! | TCTCAGTTGTTTAAGGCAAA+AGG | - | tig0033204:3327-3346 | Msa1451090:intron | 35.0% |
| ATGGGTCAAATTGCATCTAA+AGG | - | tig0033204:2112-2131 | Msa1451090:CDS | 35.0% | |
| TACTCTCGATGATCTTAAGA+AGG | - | tig0033204:2268-2287 | Msa1451090:intron | 35.0% | |
| CTTTCATATGTTTACAGCCT+AGG | - | tig0033204:2780-2799 | Msa1451090:intron | 35.0% | |
| ! | AGAAAGCAGAAAGTTTGCTT+GGG | + | tig0033204:2808-2827 | None:intergenic | 35.0% |
| ! | AAGAAAGCAGAAAGTTTGCT+TGG | + | tig0033204:2809-2828 | None:intergenic | 35.0% |
| AAACTTTCTGCTTTCTTCTC+AGG | - | tig0033204:2812-2831 | Msa1451090:intron | 35.0% | |
| AACTTTCTGCTTTCTTCTCA+GGG | - | tig0033204:2813-2832 | Msa1451090:intron | 35.0% | |
| GGAAACGGGTGTATTATATA+CGG | + | tig0033204:3054-3073 | None:intergenic | 35.0% | |
| GTATATAATACACCCGTTTC+CGG | - | tig0033204:3053-3072 | Msa1451090:intron | 35.0% | |
| TAATCTAAACACACCGGAAA+CGG | + | tig0033204:3069-3088 | None:intergenic | 35.0% | |
| TCCTCATAATCTAAACACAC+CGG | + | tig0033204:3075-3094 | None:intergenic | 35.0% | |
| TTTACCACAAGTCATGCTTT+AGG | - | tig0033204:3226-3245 | Msa1451090:intron | 35.0% | |
| CCTTAAACAACTGAGAAAAG+TGG | + | tig0033204:3323-3342 | None:intergenic | 35.0% | |
| !! | CCACTTTTCTCAGTTGTTTA+AGG | - | tig0033204:3320-3339 | Msa1451090:intron | 35.0% |
| ! | TCTCAGTTGTTTAAGGCAAA+AGG | - | tig0033204:3327-3346 | Msa1451090:intron | 35.0% |
| ACAAGCCTTGCATTTCTGTT+GGG | + | tig0033204:1900-1919 | None:intergenic | 40.0% | |
| GTTGATACGTTATCTGCTGA+TGG | - | tig0033204:1938-1957 | Msa1451090:CDS | 40.0% | |
| AAGGATCTTATTACCCGTCT+GGG | + | tig0033204:2538-2557 | None:intergenic | 40.0% | |
| AAAGGATCTTATTACCCGTC+TGG | + | tig0033204:2539-2558 | None:intergenic | 40.0% | |
| AGAATACACACCAGTTCACT+AGG | + | tig0033204:2677-2696 | None:intergenic | 40.0% | |
| ! | GAAAGCAGAAAGTTTGCTTG+GGG | + | tig0033204:2807-2826 | None:intergenic | 40.0% |
| TACTCCAACAATGCTGGATT+TGG | - | tig0033204:2999-3018 | Msa1451090:intron | 40.0% | |
| AATCTAAACACACCGGAAAC+GGG | + | tig0033204:3068-3087 | None:intergenic | 40.0% | |
| TCCGGTGTGTTTAGATTATG+AGG | - | tig0033204:3071-3090 | Msa1451090:intron | 40.0% | |
| CTGTTTATGACAGTTGACAG+TGG | - | tig0033204:3194-3213 | Msa1451090:intron | 40.0% | |
| TTATGACAGTTGACAGTGGA+AGG | - | tig0033204:3198-3217 | Msa1451090:intron | 40.0% | |
| ACAAGCCTTGCATTTCTGTT+GGG | + | tig0033204:1900-1919 | None:intergenic | 40.0% | |
| GTTGATACGTTATCTGCTGA+TGG | - | tig0033204:1938-1957 | Msa1451090:CDS | 40.0% | |
| AAGGATCTTATTACCCGTCT+GGG | + | tig0033204:2538-2557 | None:intergenic | 40.0% | |
| AAAGGATCTTATTACCCGTC+TGG | + | tig0033204:2539-2558 | None:intergenic | 40.0% | |
| AGAATACACACCAGTTCACT+AGG | + | tig0033204:2677-2696 | None:intergenic | 40.0% | |
| ! | GAAAGCAGAAAGTTTGCTTG+GGG | + | tig0033204:2807-2826 | None:intergenic | 40.0% |
| TACTCCAACAATGCTGGATT+TGG | - | tig0033204:2999-3018 | Msa1451090:intron | 40.0% | |
| AATCTAAACACACCGGAAAC+GGG | + | tig0033204:3068-3087 | None:intergenic | 40.0% | |
| TCCGGTGTGTTTAGATTATG+AGG | - | tig0033204:3071-3090 | Msa1451090:intron | 40.0% | |
| CTGTTTATGACAGTTGACAG+TGG | - | tig0033204:3194-3213 | Msa1451090:intron | 40.0% | |
| TTATGACAGTTGACAGTGGA+AGG | - | tig0033204:3198-3217 | Msa1451090:intron | 40.0% | |
| TGGAACCCAACAGAAATGCA+AGG | - | tig0033204:1892-1911 | Msa1451090:CDS | 45.0% | |
| CACAAGCCTTGCATTTCTGT+TGG | + | tig0033204:1901-1920 | None:intergenic | 45.0% | |
| CGTATGTATATACCGCGAGA+AGG | + | tig0033204:2009-2028 | None:intergenic | 45.0% | |
| AGGATCTTATTACCCGTCTG+GGG | + | tig0033204:2537-2556 | None:intergenic | 45.0% | |
| ATGCTGGACCATGATTTCAG+TGG | - | tig0033204:2953-2972 | Msa1451090:intron | 45.0% | |
| TGCTGGACCATGATTTCAGT+GGG | - | tig0033204:2954-2973 | Msa1451090:intron | 45.0% | |
| AAAAGGGCCCACTGAAATCA+TGG | + | tig0033204:2964-2983 | None:intergenic | 45.0% | |
| GTGTCCAAATCCAGCATTGT+TGG | + | tig0033204:3006-3025 | None:intergenic | 45.0% | |
| TGCACCTAAAGCATGACTTG+TGG | + | tig0033204:3233-3252 | None:intergenic | 45.0% | |
| ! | TCATGCTTTAGGTGCACACA+TGG | - | tig0033204:3237-3256 | Msa1451090:intron | 45.0% |
| CAAGAGCAGCATAGGATGAA+GGG | + | tig0033204:3278-3297 | None:intergenic | 45.0% | |
| TCAAGAGCAGCATAGGATGA+AGG | + | tig0033204:3279-3298 | None:intergenic | 45.0% | |
| TCATCCTATGCTGCTCTTGA+TGG | - | tig0033204:3279-3298 | Msa1451090:intron | 45.0% | |
| GAATCCATCAAGAGCAGCAT+AGG | + | tig0033204:3286-3305 | None:intergenic | 45.0% | |
| AGACACAGAGACAGAGACAA+AGG | - | tig0033204:3443-3462 | Msa1451090:CDS | 45.0% | |
| TGATCCTGCTGTTACACAAG+AGG | - | tig0033204:3473-3492 | Msa1451090:CDS | 45.0% | |
| TACACCTCTTGTGTAACAGC+AGG | + | tig0033204:3480-3499 | None:intergenic | 45.0% | |
| TGGAACCCAACAGAAATGCA+AGG | - | tig0033204:1892-1911 | Msa1451090:CDS | 45.0% | |
| CACAAGCCTTGCATTTCTGT+TGG | + | tig0033204:1901-1920 | None:intergenic | 45.0% | |
| CGTATGTATATACCGCGAGA+AGG | + | tig0033204:2009-2028 | None:intergenic | 45.0% | |
| AGGATCTTATTACCCGTCTG+GGG | + | tig0033204:2537-2556 | None:intergenic | 45.0% | |
| ATGCTGGACCATGATTTCAG+TGG | - | tig0033204:2953-2972 | Msa1451090:intron | 45.0% | |
| TGCTGGACCATGATTTCAGT+GGG | - | tig0033204:2954-2973 | Msa1451090:intron | 45.0% | |
| AAAAGGGCCCACTGAAATCA+TGG | + | tig0033204:2964-2983 | None:intergenic | 45.0% | |
| GTGTCCAAATCCAGCATTGT+TGG | + | tig0033204:3006-3025 | None:intergenic | 45.0% | |
| TGCACCTAAAGCATGACTTG+TGG | + | tig0033204:3233-3252 | None:intergenic | 45.0% | |
| ! | TCATGCTTTAGGTGCACACA+TGG | - | tig0033204:3237-3256 | Msa1451090:intron | 45.0% |
| CAAGAGCAGCATAGGATGAA+GGG | + | tig0033204:3278-3297 | None:intergenic | 45.0% | |
| TCAAGAGCAGCATAGGATGA+AGG | + | tig0033204:3279-3298 | None:intergenic | 45.0% | |
| TCATCCTATGCTGCTCTTGA+TGG | - | tig0033204:3279-3298 | Msa1451090:intron | 45.0% | |
| GAATCCATCAAGAGCAGCAT+AGG | + | tig0033204:3286-3305 | None:intergenic | 45.0% | |
| AGACACAGAGACAGAGACAA+AGG | - | tig0033204:3443-3462 | Msa1451090:CDS | 45.0% | |
| TGATCCTGCTGTTACACAAG+AGG | - | tig0033204:3473-3492 | Msa1451090:CDS | 45.0% | |
| TACACCTCTTGTGTAACAGC+AGG | + | tig0033204:3480-3499 | None:intergenic | 45.0% | |
| TCAATGCAATGGCCTTCTCG+CGG | - | tig0033204:1994-2013 | Msa1451090:CDS | 50.0% | |
| ! | TCACGCTGAGCAGCTTTTCA+AGG | - | tig0033204:2491-2510 | Msa1451090:intron | 50.0% |
| ! | ATTACCCGTCTGGGGTTTCT+TGG | + | tig0033204:2529-2548 | None:intergenic | 50.0% |
| AGCAGGAAAGCCTAGTGAAC+TGG | - | tig0033204:2664-2683 | Msa1451090:intron | 50.0% | |
| ! | TGCTTTAGGTGCACACATGG+AGG | - | tig0033204:3240-3259 | Msa1451090:intron | 50.0% |
| TCTGTCTCTGTGTCTGATGC+TGG | + | tig0033204:3438-3457 | None:intergenic | 50.0% | |
| TCAATGCAATGGCCTTCTCG+CGG | - | tig0033204:1994-2013 | Msa1451090:CDS | 50.0% | |
| ! | TCACGCTGAGCAGCTTTTCA+AGG | - | tig0033204:2491-2510 | Msa1451090:intron | 50.0% |
| ! | ATTACCCGTCTGGGGTTTCT+TGG | + | tig0033204:2529-2548 | None:intergenic | 50.0% |
| AGCAGGAAAGCCTAGTGAAC+TGG | - | tig0033204:2664-2683 | Msa1451090:intron | 50.0% | |
| ! | TGCTTTAGGTGCACACATGG+AGG | - | tig0033204:3240-3259 | Msa1451090:intron | 50.0% |
| TCTGTCTCTGTGTCTGATGC+TGG | + | tig0033204:3438-3457 | None:intergenic | 50.0% | |
| ! | GAAAGTTTGCTTGGGGCCCT+AGG | + | tig0033204:2800-2819 | None:intergenic | 55.0% |
| ! | GAAAGTTTGCTTGGGGCCCT+AGG | + | tig0033204:2800-2819 | None:intergenic | 55.0% |
| CTGGGGTTTCTTGGAGGCGA+AGG | + | tig0033204:2520-2539 | None:intergenic | 60.0% | |
| CGCCTCCAAGAAACCCCAGA+CGG | - | tig0033204:2521-2540 | Msa1451090:CDS | 60.0% | |
| GCCTCCAAGAAACCCCAGAC+GGG | - | tig0033204:2522-2541 | Msa1451090:CDS | 60.0% | |
| ! | ACCCGTCTGGGGTTTCTTGG+AGG | + | tig0033204:2526-2545 | None:intergenic | 60.0% |
| CTGGGGTTTCTTGGAGGCGA+AGG | + | tig0033204:2520-2539 | None:intergenic | 60.0% | |
| CGCCTCCAAGAAACCCCAGA+CGG | - | tig0033204:2521-2540 | Msa1451090:CDS | 60.0% | |
| GCCTCCAAGAAACCCCAGAC+GGG | - | tig0033204:2522-2541 | Msa1451090:CDS | 60.0% | |
| ! | ACCCGTCTGGGGTTTCTTGG+AGG | + | tig0033204:2526-2545 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0033204 | gene | 1881 | 3500 | 1881 | ID=Msa1451090;Name=Msa1451090 |
| tig0033204 | mRNA | 1881 | 3500 | 1881 | ID=Msa1451090-mRNA-1;Parent=Msa1451090;Name=Msa1451090-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|1|5|0|211 |
| tig0033204 | exon | 3366 | 3500 | 3366 | ID=Msa1451090-mRNA-1:exon:17858;Parent=Msa1451090-mRNA-1 |
| tig0033204 | exon | 2838 | 2934 | 2838 | ID=Msa1451090-mRNA-1:exon:17857;Parent=Msa1451090-mRNA-1 |
| tig0033204 | exon | 2696 | 2715 | 2696 | ID=Msa1451090-mRNA-1:exon:17856;Parent=Msa1451090-mRNA-1 |
| tig0033204 | exon | 2495 | 2584 | 2495 | ID=Msa1451090-mRNA-1:exon:17855;Parent=Msa1451090-mRNA-1 |
| tig0033204 | exon | 1881 | 2174 | 1881 | ID=Msa1451090-mRNA-1:exon:17854;Parent=Msa1451090-mRNA-1 |
| tig0033204 | CDS | 3366 | 3500 | 3366 | ID=Msa1451090-mRNA-1:cds;Parent=Msa1451090-mRNA-1 |
| tig0033204 | CDS | 2838 | 2934 | 2838 | ID=Msa1451090-mRNA-1:cds;Parent=Msa1451090-mRNA-1 |
| tig0033204 | CDS | 2696 | 2715 | 2696 | ID=Msa1451090-mRNA-1:cds;Parent=Msa1451090-mRNA-1 |
| tig0033204 | CDS | 2495 | 2584 | 2495 | ID=Msa1451090-mRNA-1:cds;Parent=Msa1451090-mRNA-1 |
| tig0033204 | CDS | 1881 | 2174 | 1881 | ID=Msa1451090-mRNA-1:cds;Parent=Msa1451090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
