AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1452340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1452340 MtrunA17_Chr8g0357771 94.475 181 10 0 1 181 1 181 1.66e-124 348
Msa1452340 MtrunA17_Chr1g0169761 59.429 175 71 0 1 175 1 175 1.32e-72 216
Msa1452340 MtrunA17_Chr8g0356071 63.314 169 56 2 1 169 1 163 1.76e-69 208
Msa1452340 MtrunA17_Chr1g0180591 56.000 175 77 0 1 175 1 175 2.01e-68 206
Msa1452340 MtrunA17_Chr4g0074101 53.646 192 72 1 1 175 1 192 3.82e-67 203
Msa1452340 MtrunA17_Chr1g0175611 58.333 168 70 0 1 168 1 168 1.01e-66 201
Msa1452340 MtrunA17_Chr1g0175601 57.386 176 74 1 1 175 1 176 1.88e-66 201
Msa1452340 MtrunA17_Chr8g0376821 57.831 166 70 0 1 166 1 166 7.86e-66 199
Msa1452340 MtrunA17_Chr4g0052061 39.881 168 81 5 1 164 1 152 4.44e-29 105
Msa1452340 MtrunA17_Chr3g0119901 48.182 110 47 2 1 104 8 113 3.44e-25 96.7
Msa1452340 MtrunA17_Chr1g0206991 46.535 101 52 1 2 100 9 109 7.67e-25 95.1
Msa1452340 MtrunA17_Chr3g0085241 39.355 155 82 3 1 143 40 194 3.64e-24 95.1
Msa1452340 MtrunA17_Chr3g0099411 38.621 145 71 3 2 142 9 139 5.87e-24 94.0
Msa1452340 MtrunA17_Chr2g0333981 43.269 104 57 1 1 104 11 112 6.52e-24 92.4
Msa1452340 MtrunA17_Chr5g0419601 34.545 165 92 3 1 151 8 170 6.90e-24 94.0
Msa1452340 MtrunA17_Chr8g0379021 40.777 103 59 1 2 104 12 112 1.71e-23 91.7
Msa1452340 MtrunA17_Chr1g0208581 37.580 157 80 3 2 143 9 162 3.19e-23 92.0
Msa1452340 MtrunA17_Chr1g0206721 46.535 101 52 1 2 100 9 109 3.40e-23 92.4
Msa1452340 MtrunA17_Chr3g0099421 57.971 69 29 0 2 70 34 102 7.48e-23 91.7
Msa1452340 MtrunA17_Chr4g0052081 42.056 107 59 1 1 104 1 107 2.81e-22 88.6
Msa1452340 MtrunA17_Chr2g0292791 57.971 69 29 0 2 70 9 77 4.04e-22 89.4
Msa1452340 MtrunA17_Chr1g0206701 57.971 69 29 0 2 70 9 77 4.17e-22 89.4
Msa1452340 MtrunA17_Chr5g0422421 35.897 156 84 3 2 143 9 162 5.03e-22 89.4
Msa1452340 MtrunA17_Chr3g0089141 56.522 69 30 0 2 70 9 77 9.04e-22 88.2
Msa1452340 MtrunA17_Chr1g0208561 56.522 69 30 0 2 70 9 77 1.05e-21 88.2
Msa1452340 MtrunA17_Chr8g0355091 56.522 69 30 0 2 70 9 77 1.07e-21 88.2
Msa1452340 MtrunA17_Chr2g0325971 37.580 157 80 3 2 143 9 162 1.89e-21 87.4
Msa1452340 MtrunA17_Chr1g0149391 55.072 69 31 0 2 70 9 77 2.31e-21 87.4
Msa1452340 MtrunA17_Chr5g0422941 45.918 98 40 1 2 99 9 93 4.92e-21 86.7
Msa1452340 MtrunA17_Chr1g0188671 50.633 79 39 0 2 80 47 125 5.80e-21 87.0
Msa1452340 MtrunA17_Chr2g0317451 34.146 164 92 4 2 151 9 170 6.52e-21 86.3
Msa1452340 MtrunA17_Chr2g0317481 34.146 164 92 4 2 151 9 170 7.02e-21 86.3
Msa1452340 MtrunA17_Chr1g0187361 56.522 69 30 0 2 70 9 77 8.13e-21 85.9
Msa1452340 MtrunA17_Chr2g0300421 42.017 119 64 2 2 120 9 122 1.16e-20 84.0
Msa1452340 MtrunA17_Chr4g0018951 37.600 125 76 2 17 140 27 150 1.30e-20 84.0
Msa1452340 MtrunA17_Chr3g0089151 50.725 69 34 0 2 70 9 77 4.71e-20 81.3
Msa1452340 MtrunA17_Chr2g0300441 53.521 71 33 0 2 72 9 79 8.33e-20 83.2
Msa1452340 MtrunA17_Chr1g0187351 62.963 54 20 0 18 71 8 61 3.33e-19 77.4
Msa1452340 MtrunA17_Chr1g0206691 37.589 141 70 3 18 143 8 145 8.29e-19 80.5
Msa1452340 MtrunA17_Chr2g0279821 52.174 69 33 0 1 69 1 69 1.33e-18 80.1
Msa1452340 MtrunA17_Chr7g0238991 58.333 60 25 0 13 72 32 91 1.51e-18 80.1
Msa1452340 MtrunA17_Chr2g0284911 35.115 131 81 2 1 130 16 143 2.54e-18 79.7
Msa1452340 MtrunA17_Chr5g0427401 46.377 69 37 0 1 69 1 69 7.93e-18 77.8
Msa1452340 MtrunA17_Chr4g0071601 48.101 79 41 0 1 79 11 89 9.54e-18 76.6
Msa1452340 MtrunA17_Chr5g0411691 50.725 69 34 0 1 69 1 69 1.05e-17 77.8
Msa1452340 MtrunA17_Chr8g0351041 35.714 112 70 2 1 112 1 110 1.89e-17 75.5
Msa1452340 MtrunA17_Chr4g0049541 47.826 69 36 0 1 69 1 69 2.49e-17 76.3
Msa1452340 MtrunA17_Chr3g0142191 37.778 135 77 3 1 134 1 129 2.50e-17 76.6
Msa1452340 MtrunA17_Chr4g0020221 50.725 69 34 0 1 69 1 69 2.54e-17 77.0
Msa1452340 MtrunA17_Chr3g0111841 62.500 48 18 0 18 65 12 59 4.11e-17 72.0
Msa1452340 MtrunA17_Chr5g0427921 56.667 60 26 0 1 60 1 60 6.09e-17 71.2
Msa1452340 MtrunA17_Chr5g0420081 46.479 71 35 1 1 71 1 68 6.98e-17 75.5
Msa1452340 MtrunA17_Chr8g0351051 44.000 75 42 0 1 75 1 75 7.41e-17 75.5
Msa1452340 MtrunA17_Chr8g0380021 35.714 112 69 1 1 112 17 125 7.99e-17 75.5
Msa1452340 MtrunA17_Chr1g0204111 42.667 75 43 0 1 75 17 91 8.33e-17 75.5
Msa1452340 MtrunA17_Chr4g0049901 37.857 140 71 3 1 132 27 158 8.40e-17 75.5
Msa1452340 MtrunA17_Chr8g0351031 36.538 104 64 2 1 104 1 102 8.88e-17 75.1
Msa1452340 MtrunA17_Chr7g0246431 46.377 69 37 0 1 69 1 69 1.08e-16 74.7
Msa1452340 MtrunA17_Chr3g0097101 49.275 69 35 0 1 69 16 84 1.44e-16 74.7
Msa1452340 MtrunA17_Chr3g0077501 44.928 69 38 0 1 69 1 69 3.77e-16 73.2
Msa1452340 MtrunA17_Chr8g0366231 46.479 71 35 1 1 71 1 68 3.84e-16 73.6
Msa1452340 MtrunA17_Chr6g0474371 31.655 139 85 4 1 134 1 134 5.51e-16 72.4
Msa1452340 MtrunA17_Chr7g0246381 50.000 68 29 1 1 63 1 68 6.07e-16 68.9
Msa1452340 MtrunA17_Chr4g0061691 46.479 71 35 1 1 71 1 68 6.14e-16 72.8
Msa1452340 MtrunA17_Chr5g0420091 52.632 57 27 0 1 57 1 57 6.56e-16 72.4
Msa1452340 MtrunA17_Chr7g0220111 50.820 61 30 0 1 61 1 61 6.97e-16 73.2
Msa1452340 MtrunA17_Chr5g0404951 48.387 62 32 0 1 62 1 62 7.59e-16 72.8
Msa1452340 MtrunA17_Chr4g0057151 46.377 69 37 0 1 69 1 69 8.40e-16 72.0
Msa1452340 MtrunA17_Chr4g0061671 46.774 62 33 0 1 62 1 62 1.64e-15 70.9
Msa1452340 MtrunA17_Chr7g0220121 41.429 70 40 1 1 69 1 70 2.54e-15 71.6
Msa1452340 MtrunA17_Chr4g0044071 53.448 58 27 0 1 58 1 58 2.82e-15 68.6
Msa1452340 MtrunA17_Chr1g0173161 54.386 57 26 0 1 57 1 57 3.01e-15 67.4
Msa1452340 MtrunA17_Chr6g0455511 31.609 174 102 5 1 164 1 167 3.30e-15 71.2
Msa1452340 MtrunA17_Chr3g0122251 52.459 61 29 0 1 61 1 61 3.30e-15 71.2
Msa1452340 MtrunA17_Chr2g0308251 43.662 71 39 1 1 70 1 71 4.49e-15 67.0
Msa1452340 MtrunA17_Chr8g0377561 52.632 57 27 0 1 57 1 57 4.63e-15 67.4
Msa1452340 MtrunA17_Chr5g0412461 44.615 65 36 0 1 65 1 65 5.11e-15 70.5
Msa1452340 MtrunA17_Chr4g0018421 54.545 55 25 0 1 55 1 55 6.30e-15 69.7
Msa1452340 MtrunA17_Chr5g0412271 44.615 65 36 0 1 65 1 65 6.92e-15 70.1
Msa1452340 MtrunA17_Chr1g0164791 43.662 71 38 1 1 69 1 71 1.48e-14 69.3
Msa1452340 MtrunA17_Chr3g0111931 50.943 53 26 0 18 70 6 58 1.51e-14 66.2
Msa1452340 MtrunA17_Chr3g0134451 31.765 170 83 5 1 144 1 163 4.51e-14 68.9
Msa1452340 MtrunA17_Chr1g0159661 41.935 62 36 0 1 62 1 62 1.36e-13 65.5
Msa1452340 MtrunA17_Chr5g0425191 53.448 58 27 0 1 58 1 58 1.73e-13 63.5
Msa1452340 MtrunA17_Chr3g0111831 56.250 48 21 0 18 65 20 67 1.75e-13 62.8
Msa1452340 MtrunA17_Chr3g0125241 41.935 62 36 0 1 62 26 87 3.24e-13 65.1
Msa1452340 MtrunA17_Chr1g0166611 66.667 42 14 0 17 58 21 62 3.90e-13 63.5
Msa1452340 MtrunA17_Chr3g0093131 34.459 148 58 5 19 140 36 170 1.04e-12 63.5
Msa1452340 MtrunA17_Chr5g0417661 50.000 54 27 0 1 54 56 109 3.33e-12 60.8
Msa1452340 MtrunA17_Chr4g0060841 28.743 167 88 4 1 139 1 164 3.70e-12 63.5
Msa1452340 MtrunA17_Chr8g0345001 48.148 54 28 0 20 73 36 89 2.95e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1452340 AT2G34440.1 42.775 173 87 4 1 162 1 172 7.54e-34 118
Msa1452340 AT3G66656.1 40.341 176 88 4 1 160 1 175 8.83e-31 110
Msa1452340 AT2G24840.1 37.805 164 87 4 1 150 62 224 1.91e-30 112
Msa1452340 AT5G60440.1 43.558 163 65 6 2 143 7 163 8.88e-28 105
Msa1452340 AT1G01530.1 46.018 113 58 3 1 112 6 116 7.95e-23 92.0
Msa1452340 AT1G47760.1 55.882 68 30 0 1 68 1 68 3.31e-22 88.6
Msa1452340 AT3G57230.2 47.674 86 38 1 1 86 1 79 1.28e-20 83.6
Msa1452340 AT4G36590.1 57.353 68 29 0 2 69 7 74 1.28e-20 85.9
Msa1452340 AT3G57230.1 47.674 86 38 1 1 86 1 79 3.10e-20 84.7
Msa1452340 AT3G57230.4 47.674 86 38 1 1 86 1 79 3.10e-20 84.7
Msa1452340 AT1G65360.1 53.623 69 32 0 1 69 6 74 8.04e-20 83.6
Msa1452340 AT2G22630.1 53.623 69 32 0 1 69 1 69 2.62e-19 82.0
Msa1452340 AT2G22630.2 53.623 69 32 0 1 69 1 69 2.62e-19 82.0
Msa1452340 AT4G37940.1 53.623 69 32 0 1 69 1 69 4.18e-19 81.6
Msa1452340 AT4G37940.4 53.623 69 32 0 1 69 1 69 6.00e-19 80.9
Msa1452340 AT3G61120.1 44.872 78 43 0 1 78 1 78 9.33e-19 80.9
Msa1452340 AT4G37940.3 53.623 69 32 0 1 69 1 69 1.17e-18 79.3
Msa1452340 AT1G29962.1 48.611 72 37 0 2 73 8 79 1.49e-18 79.3
Msa1452340 AT3G04100.1 36.691 139 65 3 2 135 14 134 2.82e-18 79.0
Msa1452340 AT1G28460.1 47.222 72 38 0 2 73 8 79 5.16e-18 77.8
Msa1452340 AT2G03710.3 35.088 171 89 6 1 158 1 162 1.34e-17 76.6
Msa1452340 AT2G45660.2 33.036 112 72 1 1 112 1 109 1.81e-17 75.9
Msa1452340 AT1G71692.1 42.553 94 50 2 1 93 1 91 1.93e-17 77.0
Msa1452340 AT5G15800.2 34.320 169 93 4 1 158 1 162 3.72e-17 77.0
Msa1452340 AT5G15800.1 34.320 169 93 4 1 158 1 162 3.93e-17 76.6
Msa1452340 AT4G24540.1 35.088 114 70 1 1 110 1 114 4.79e-17 75.9
Msa1452340 AT2G45650.1 46.377 69 37 0 1 69 1 69 5.48e-17 76.3
Msa1452340 AT5G13790.1 40.741 108 53 2 1 106 1 99 5.64e-17 76.6
Msa1452340 AT2G45660.1 45.714 70 38 0 1 70 1 70 6.36e-17 75.5
Msa1452340 AT1G26310.1 30.667 150 102 1 1 150 1 148 7.78e-17 75.9
Msa1452340 AT3G57390.3 47.826 69 36 0 1 69 1 69 8.15e-17 75.5
Msa1452340 AT2G03710.1 35.088 171 89 6 1 158 1 162 8.88e-17 75.9
Msa1452340 AT1G72350.1 53.623 69 30 1 2 70 43 109 9.56e-17 75.1
Msa1452340 AT4G22950.2 47.826 69 36 0 1 69 1 69 9.59e-17 74.3
Msa1452340 AT5G13790.2 40.367 109 55 3 1 106 1 102 1.02e-16 75.9
Msa1452340 AT1G69120.2 49.296 71 33 1 1 71 1 68 1.02e-16 75.5
Msa1452340 AT2G03710.2 35.088 171 89 6 1 158 1 162 1.03e-16 75.9
Msa1452340 AT3G58780.1 31.169 154 101 2 1 154 16 164 1.10e-16 75.5
Msa1452340 AT3G58780.5 31.169 154 101 2 1 154 22 170 1.15e-16 75.5
Msa1452340 AT4G09960.2 33.929 112 71 1 1 112 1 109 1.29e-16 74.7
Msa1452340 AT4G09960.1 33.929 112 71 1 1 112 1 109 1.39e-16 75.1
Msa1452340 AT4G09960.6 33.929 112 71 1 1 112 2 110 1.43e-16 75.1
Msa1452340 AT3G57390.1 47.826 69 36 0 1 69 1 69 1.58e-16 75.1
Msa1452340 AT4G09960.5 33.929 112 71 1 1 112 11 119 1.80e-16 74.7
Msa1452340 AT4G09960.3 33.929 112 71 1 1 112 27 135 2.27e-16 74.7
Msa1452340 AT2G22540.3 49.231 65 33 0 1 65 1 65 2.35e-16 74.3
Msa1452340 AT2G22540.1 49.231 65 33 0 1 65 1 65 2.35e-16 74.3
Msa1452340 AT1G69120.1 49.296 71 33 1 1 71 1 68 2.51e-16 74.7
Msa1452340 AT1G24260.2 35.503 169 92 5 1 157 1 164 3.01e-16 74.3
Msa1452340 AT4G09960.4 33.929 112 71 1 1 112 96 204 3.08e-16 75.5
Msa1452340 AT2G14210.1 54.098 61 28 0 1 61 1 61 3.11e-16 73.9
Msa1452340 AT3G02310.2 34.857 175 96 5 1 164 1 168 3.24e-16 73.6
Msa1452340 AT1G22130.1 50.704 71 34 1 1 70 1 71 3.35e-16 75.1
Msa1452340 AT3G58780.4 34.821 112 70 1 1 112 16 124 3.65e-16 74.7
Msa1452340 AT5G60910.1 46.479 71 35 1 1 71 1 68 3.72e-16 73.9
Msa1452340 AT2G14210.2 54.098 61 28 0 1 61 1 61 4.18e-16 73.9
Msa1452340 AT3G30260.1 54.386 57 26 0 1 57 1 57 5.70e-16 73.6
Msa1452340 AT4G22950.3 47.826 69 36 0 1 69 1 69 6.32e-16 73.2
Msa1452340 AT4G22950.1 47.826 69 36 0 1 69 1 69 6.32e-16 73.2
Msa1452340 AT1G77980.1 48.101 79 36 2 1 78 1 75 1.06e-15 73.9
Msa1452340 AT3G54340.1 50.000 62 31 0 1 62 1 62 1.06e-15 72.8
Msa1452340 AT4G11880.2 35.897 117 50 2 1 116 1 93 1.17e-15 71.6
Msa1452340 AT4G11880.3 35.897 117 50 2 1 116 1 93 1.17e-15 71.6
Msa1452340 AT2G42830.2 30.968 155 100 3 1 154 16 164 1.21e-15 72.8
Msa1452340 AT2G42830.1 31.126 151 97 3 1 150 16 160 1.24e-15 72.8
Msa1452340 AT3G02310.1 34.857 175 96 6 1 164 1 168 1.27e-15 72.8
Msa1452340 AT1G24260.1 35.882 170 89 7 1 157 1 163 1.31e-15 72.8
Msa1452340 AT4G18960.1 34.615 130 81 2 2 130 18 144 1.35e-15 72.8
Msa1452340 AT1G46408.1 50.633 79 33 3 1 73 1 79 1.82e-15 72.4
Msa1452340 AT5G65070.4 35.115 131 79 3 1 127 1 129 2.19e-15 70.1
Msa1452340 AT5G51860.2 43.662 71 40 0 1 71 1 71 2.89e-15 70.9
Msa1452340 AT5G51860.1 43.662 71 40 0 1 71 1 71 3.19e-15 70.9
Msa1452340 AT4G11880.4 35.897 117 50 2 1 116 1 93 4.28e-15 70.9
Msa1452340 AT4G11880.1 35.897 117 50 2 1 116 1 93 4.28e-15 70.9
Msa1452340 AT5G10140.2 52.632 57 27 0 1 57 1 57 4.79e-15 69.7
Msa1452340 AT5G65070.1 35.115 131 79 3 1 127 1 129 5.97e-15 70.1
Msa1452340 AT5G10140.4 52.632 57 27 0 1 57 1 57 6.09e-15 69.7
Msa1452340 AT3G58780.2 30.519 154 95 2 1 154 16 157 6.70e-15 70.5
Msa1452340 AT5G65070.3 43.590 78 41 2 1 76 1 77 6.70e-15 70.5
Msa1452340 AT1G24260.3 41.935 93 49 1 1 93 1 88 6.75e-15 70.5
Msa1452340 AT5G10140.1 52.632 57 27 0 1 57 1 57 7.45e-15 69.7
Msa1452340 AT5G51870.1 42.029 69 40 0 1 69 1 69 7.67e-15 69.7
Msa1452340 AT4G37435.1 28.814 177 93 4 1 150 1 171 8.00e-15 69.3
Msa1452340 AT5G10140.3 51.724 58 28 0 1 58 1 58 9.75e-15 69.3
Msa1452340 AT5G51870.3 30.189 159 89 3 1 150 11 156 1.32e-14 69.7
Msa1452340 AT5G51870.4 30.189 159 89 3 1 150 1 146 1.36e-14 69.3
Msa1452340 AT5G51870.2 42.029 69 40 0 1 69 1 69 1.40e-14 68.6
Msa1452340 AT1G28450.1 43.056 72 41 0 2 73 8 79 1.66e-14 68.6
Msa1452340 AT5G51870.5 30.323 155 86 3 1 146 24 165 1.90e-14 68.6
Msa1452340 AT2G22540.2 50.877 57 28 0 1 57 1 57 1.91e-14 69.3
Msa1452340 AT5G20240.2 47.619 63 33 0 1 63 1 63 2.07e-14 67.4
Msa1452340 AT3G58780.3 50.820 61 30 0 1 61 16 76 2.30e-14 69.7
Msa1452340 AT5G65070.2 42.857 70 39 1 1 69 1 70 3.40e-14 68.6
Msa1452340 AT5G20240.1 47.619 63 33 0 1 63 1 63 3.75e-14 68.2
Msa1452340 AT5G49490.1 41.176 102 45 2 3 100 46 136 6.40e-14 68.6
Msa1452340 AT5G65070.5 42.857 70 39 1 1 69 1 70 7.87e-14 67.0
Msa1452340 AT5G23260.4 56.140 57 25 0 1 57 17 73 8.26e-14 68.2
Msa1452340 AT5G23260.2 34.731 167 91 7 1 157 1 159 8.46e-14 67.8
Msa1452340 AT5G23260.1 56.140 57 25 0 1 57 17 73 9.05e-14 67.8
Msa1452340 AT5G23260.3 36.129 155 85 6 1 149 1 147 9.53e-14 67.4
Msa1452340 AT5G65050.2 52.727 55 26 0 1 55 1 55 9.62e-14 66.2
Msa1452340 AT5G62165.17 39.130 69 42 0 1 69 1 69 1.23e-13 65.5
Msa1452340 AT5G62165.12 39.130 69 42 0 1 69 1 69 1.23e-13 65.5
Msa1452340 AT5G62165.11 39.130 69 42 0 1 69 1 69 1.23e-13 65.5
Msa1452340 AT1G18750.4 28.409 176 85 4 1 138 1 173 1.35e-13 68.2
Msa1452340 AT1G18750.1 28.409 176 85 4 1 138 1 173 1.44e-13 68.2
Msa1452340 AT5G65080.3 44.286 70 38 1 1 69 8 77 1.50e-13 66.2
Msa1452340 AT5G65060.3 54.545 55 25 0 1 55 1 55 1.72e-13 65.9
Msa1452340 AT1G17310.1 57.407 54 21 1 17 70 63 114 1.88e-13 66.2
Msa1452340 AT5G65060.1 54.545 55 25 0 1 55 1 55 2.20e-13 65.9
Msa1452340 AT5G62165.6 39.130 69 42 0 1 69 1 69 2.31e-13 64.7
Msa1452340 AT5G62165.9 39.130 69 42 0 1 69 1 69 2.31e-13 64.7
Msa1452340 AT5G62165.7 39.130 69 42 0 1 69 1 69 2.31e-13 64.7
Msa1452340 AT5G62165.8 39.130 69 42 0 1 69 1 69 2.31e-13 64.7
Msa1452340 AT5G62165.13 39.130 69 42 0 1 69 1 69 2.31e-13 64.7
Msa1452340 AT1G17310.2 57.407 54 21 1 17 70 74 125 2.42e-13 66.2
Msa1452340 AT5G65060.2 54.545 55 25 0 1 55 1 55 2.52e-13 65.5
Msa1452340 AT5G62165.3 39.130 69 42 0 1 69 1 69 2.76e-13 65.9
Msa1452340 AT5G62165.1 39.130 69 42 0 1 69 1 69 2.76e-13 65.9
Msa1452340 AT5G62165.2 39.130 69 42 0 1 69 1 69 2.76e-13 65.9
Msa1452340 AT5G62165.14 30.693 101 59 1 1 90 1 101 2.99e-13 63.2
Msa1452340 AT5G62165.10 39.130 69 42 0 1 69 1 69 3.03e-13 65.5
Msa1452340 AT5G62165.4 39.130 69 42 0 1 69 1 69 3.03e-13 65.5
Msa1452340 AT1G77950.3 40.845 71 41 1 1 70 1 71 3.09e-13 66.2
Msa1452340 AT1G77950.2 40.845 71 41 1 1 70 1 71 3.09e-13 66.2
Msa1452340 AT1G77950.1 40.845 71 41 1 1 70 1 71 3.09e-13 66.2
Msa1452340 AT1G77950.4 40.845 71 41 1 1 70 1 71 3.09e-13 66.2
Msa1452340 AT5G65050.3 52.727 55 26 0 1 55 1 55 3.22e-13 65.5
Msa1452340 AT5G65050.1 52.727 55 26 0 1 55 1 55 3.86e-13 64.7
Msa1452340 AT5G65050.5 52.727 55 26 0 1 55 1 55 3.94e-13 64.7
Msa1452340 AT1G18750.3 43.662 71 38 1 1 69 1 71 4.69e-13 66.6
Msa1452340 AT5G65080.2 48.214 56 29 0 1 56 8 63 8.46e-13 64.3
Msa1452340 AT1G60920.1 43.421 76 38 2 3 73 5 80 1.03e-12 63.9
Msa1452340 AT1G31140.1 30.476 105 68 2 1 100 1 105 2.62e-12 63.2
Msa1452340 AT5G49420.1 45.333 75 37 1 3 73 8 82 2.99e-12 64.3
Msa1452340 AT5G38620.1 45.946 74 36 1 3 72 6 79 4.54e-12 63.5
Msa1452340 AT2G26320.1 45.902 61 33 0 1 61 17 77 8.37e-12 59.7
Msa1452340 AT1G69540.1 41.429 70 40 1 1 69 1 70 1.53e-11 62.0
Msa1452340 AT1G69540.2 41.429 70 40 1 1 69 1 70 2.24e-11 61.6
Msa1452340 AT5G04640.1 32.812 128 73 3 3 117 5 132 2.67e-11 61.2
Msa1452340 AT2G03060.2 33.083 133 59 4 1 106 1 130 2.76e-11 61.6
Msa1452340 AT2G03060.3 33.083 133 59 4 1 106 1 130 3.10e-11 61.2
Msa1452340 AT2G03060.7 33.083 133 59 4 1 106 1 130 3.10e-11 61.2
Msa1452340 AT2G03060.1 33.083 133 59 4 1 106 1 130 3.10e-11 61.2

Find 43 sgRNAs with CRISPR-Local

Find 43 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTCTCCTTCAAGAAATT+TGG 0.179978 tig0033833:-23098 Msa1452340:intergenic
GGAATAAGCCTTACTCTTTC+GGG 0.222535 tig0033833:+23050 Msa1452340:CDS
GGGAATAAGCCTTACTCTTT+CGG 0.264231 tig0033833:+23049 Msa1452340:CDS
CAGTTGGTTTGTATTCTTCT+AGG 0.270957 tig0033833:-23249 Msa1452340:intergenic
TGATTCAGATCCTCTCTGTT+TGG 0.338080 tig0033833:-23160 Msa1452340:intergenic
GCTATTGTTGTGTTCTCCCC+TGG 0.368488 tig0033833:+23028 Msa1452340:CDS
ACATTCTCTAAGCGTCGAAC+AGG 0.429261 tig0033833:+22956 Msa1452340:CDS
CTATGAAAATTCTAAAGCAT+TGG 0.429974 tig0033833:-23433 Msa1452340:intergenic
CTATTGTTGTGTTCTCCCCT+GGG 0.431123 tig0033833:+23029 Msa1452340:CDS
GTTACTTCTTGCAGAGAAAC+CGG 0.436314 tig0033833:+23366 Msa1452340:CDS
ATATCAGAAATTGAAGGAAA+TGG 0.441725 tig0033833:+23303 Msa1452340:CDS
GTTGCATCCAAATTTCTTGA+AGG 0.449324 tig0033833:+23091 Msa1452340:CDS
AATGTAACCTGCCTTATGAT+AGG 0.459002 tig0033833:-22938 Msa1452340:intergenic
AACAAAGTCGCAAGAAAGAA+AGG 0.460568 tig0033833:+23403 Msa1452340:CDS
ATGAACTTGCCATCTTGTGC+GGG 0.468340 tig0033833:+22996 Msa1452340:CDS
CTTGGGTGCCCGAAAGAGTA+AGG 0.491836 tig0033833:-23058 Msa1452340:intergenic
TCAAGTTGAGTGAGTTCAGT+TGG 0.504549 tig0033833:-23265 Msa1452340:intergenic
AGGAGGCTGAAAATGAAGCT+AGG 0.515324 tig0033833:+23212 Msa1452340:CDS
AGCTTCCTATGCCATCATCT+AGG 0.527794 tig0033833:-23123 Msa1452340:intergenic
AAAGAGTAAGGCTTATTCCC+AGG 0.528202 tig0033833:-23046 Msa1452340:intergenic
AATGAACTTGCCATCTTGTG+CGG 0.538350 tig0033833:+22995 Msa1452340:CDS
AACTGAACTCACTCAACTTG+AGG 0.538837 tig0033833:+23267 Msa1452340:CDS
ATGTAACCTGCCTTATGATA+GGG 0.543825 tig0033833:-22937 Msa1452340:intergenic
GGGTGAGAGACCCTATCATA+AGG 0.546640 tig0033833:+22927 Msa1452340:CDS
GATGCAACATCATCAACACT+TGG 0.549337 tig0033833:-23076 Msa1452340:intergenic
AATTTCTGCCCCGCACAAGA+TGG 0.555860 tig0033833:-23005 Msa1452340:intergenic
CTTGCAGAGAAACCGGTGGT+TGG 0.563786 tig0033833:+23373 Msa1452340:CDS
GGAGAGCTCAACCTAGATGA+TGG 0.566220 tig0033833:+23112 Msa1452340:CDS
GGAGGCTGAAAATGAAGCTA+GGG 0.567281 tig0033833:+23213 Msa1452340:CDS
GTCGCAAAATTGCGATTGCG+AGG 0.570735 tig0033833:+22906 Msa1452340:CDS
GAGAGACCCTATCATAAGGC+AGG 0.574297 tig0033833:+22931 Msa1452340:CDS
AAGAGTAAGGCTTATTCCCA+GGG 0.598555 tig0033833:-23045 Msa1452340:intergenic
AGATGTGCTAGCTCAACTAA+AGG 0.611567 tig0033833:+23192 Msa1452340:CDS
AGATTCATATCAGAAATTGA+AGG 0.616331 tig0033833:+23297 Msa1452340:CDS
TCGCAAAATTGCGATTGCGA+GGG 0.641127 tig0033833:+22907 Msa1452340:CDS
TGTGCTAGCTCAACTAAAGG+AGG 0.641632 tig0033833:+23195 Msa1452340:CDS
TCGAACAGGATTATTCAAGA+AGG 0.647981 tig0033833:+22970 Msa1452340:CDS
CTCAACCTAGATGATGGCAT+AGG 0.656307 tig0033833:+23118 Msa1452340:CDS
ATGCAACATCATCAACACTT+GGG 0.663273 tig0033833:-23075 Msa1452340:intergenic
TGAACTTGCCATCTTGTGCG+GGG 0.674850 tig0033833:+22997 Msa1452340:CDS
TTCTGAAGTTCCAAACAGAG+AGG 0.695196 tig0033833:+23150 Msa1452340:CDS
ACTTCTTGCAGAGAAACCGG+TGG 0.709944 tig0033833:+23369 Msa1452340:CDS
AGAGTAAGGCTTATTCCCAG+GGG 0.760036 tig0033833:-23044 Msa1452330:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGATTCATATCAGAAATTGA+AGG + tig0033833:23297-23316 Msa1452340:CDS 25.0%
! ATATCAGAAATTGAAGGAAA+TGG + tig0033833:23303-23322 Msa1452340:CDS 25.0%
ATGTAACCTGCCTTATGATA+GGG - tig0033833:22940-22959 Msa1452340:intergenic 35.0%
AATGTAACCTGCCTTATGAT+AGG - tig0033833:22941-22960 Msa1452340:intergenic 35.0%
TCGAACAGGATTATTCAAGA+AGG + tig0033833:22970-22989 Msa1452340:CDS 35.0%
ATGCAACATCATCAACACTT+GGG - tig0033833:23078-23097 Msa1452340:intergenic 35.0%
GTTGCATCCAAATTTCTTGA+AGG + tig0033833:23091-23110 Msa1452340:CDS 35.0%
!! CAGTTGGTTTGTATTCTTCT+AGG - tig0033833:23252-23271 Msa1452340:intergenic 35.0%
!!! TTGTTTTTTGTTCCAACCAC+CGG - tig0033833:23388-23407 Msa1452340:intergenic 35.0%
AACAAAGTCGCAAGAAAGAA+AGG + tig0033833:23403-23422 Msa1452340:CDS 35.0%
AATGAACTTGCCATCTTGTG+CGG + tig0033833:22995-23014 Msa1452340:CDS 40.0%
AAGAGTAAGGCTTATTCCCA+GGG - tig0033833:23048-23067 Msa1452340:intergenic 40.0%
AAAGAGTAAGGCTTATTCCC+AGG - tig0033833:23049-23068 Msa1452340:intergenic 40.0%
GGGAATAAGCCTTACTCTTT+CGG + tig0033833:23049-23068 Msa1452340:CDS 40.0%
GGAATAAGCCTTACTCTTTC+GGG + tig0033833:23050-23069 Msa1452340:CDS 40.0%
GATGCAACATCATCAACACT+TGG - tig0033833:23079-23098 Msa1452340:intergenic 40.0%
GAGCTCTCCTTCAAGAAATT+TGG - tig0033833:23101-23120 Msa1452340:intergenic 40.0%
!! TTCTGAAGTTCCAAACAGAG+AGG + tig0033833:23150-23169 Msa1452340:CDS 40.0%
TGATTCAGATCCTCTCTGTT+TGG - tig0033833:23163-23182 Msa1452340:intergenic 40.0%
AGATGTGCTAGCTCAACTAA+AGG + tig0033833:23192-23211 Msa1452340:CDS 40.0%
!! TCAAGTTGAGTGAGTTCAGT+TGG - tig0033833:23268-23287 Msa1452340:intergenic 40.0%
AACTGAACTCACTCAACTTG+AGG + tig0033833:23267-23286 Msa1452340:CDS 40.0%
GTTACTTCTTGCAGAGAAAC+CGG + tig0033833:23366-23385 Msa1452340:CDS 40.0%
TCGCAAAATTGCGATTGCGA+GGG + tig0033833:22907-22926 Msa1452340:CDS 45.0%
!! ACATTCTCTAAGCGTCGAAC+AGG + tig0033833:22956-22975 Msa1452340:CDS 45.0%
ATGAACTTGCCATCTTGTGC+GGG + tig0033833:22996-23015 Msa1452340:CDS 45.0%
CTATTGTTGTGTTCTCCCCT+GGG + tig0033833:23029-23048 Msa1452340:CDS 45.0%
AGAGTAAGGCTTATTCCCAG+GGG - tig0033833:23047-23066 Msa1452340:intergenic 45.0%
! CTCAACCTAGATGATGGCAT+AGG + tig0033833:23118-23137 Msa1452340:CDS 45.0%
AGCTTCCTATGCCATCATCT+AGG - tig0033833:23126-23145 Msa1452340:intergenic 45.0%
TGTGCTAGCTCAACTAAAGG+AGG + tig0033833:23195-23214 Msa1452340:CDS 45.0%
AGGAGGCTGAAAATGAAGCT+AGG + tig0033833:23212-23231 Msa1452340:CDS 45.0%
GGAGGCTGAAAATGAAGCTA+GGG + tig0033833:23213-23232 Msa1452340:CDS 45.0%
GTCGCAAAATTGCGATTGCG+AGG + tig0033833:22906-22925 Msa1452340:CDS 50.0%
GGGTGAGAGACCCTATCATA+AGG + tig0033833:22927-22946 Msa1452340:CDS 50.0%
GAGAGACCCTATCATAAGGC+AGG + tig0033833:22931-22950 Msa1452340:CDS 50.0%
TGAACTTGCCATCTTGTGCG+GGG + tig0033833:22997-23016 Msa1452340:CDS 50.0%
AATTTCTGCCCCGCACAAGA+TGG - tig0033833:23008-23027 Msa1452340:intergenic 50.0%
GCTATTGTTGTGTTCTCCCC+TGG + tig0033833:23028-23047 Msa1452340:CDS 50.0%
GGAGAGCTCAACCTAGATGA+TGG + tig0033833:23112-23131 Msa1452340:CDS 50.0%
ACTTCTTGCAGAGAAACCGG+TGG + tig0033833:23369-23388 Msa1452340:CDS 50.0%
CTTGGGTGCCCGAAAGAGTA+AGG - tig0033833:23061-23080 Msa1452340:intergenic 55.0%
CTTGCAGAGAAACCGGTGGT+TGG + tig0033833:23373-23392 Msa1452340:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0033833 gene 22899 23444 22899 ID=Msa1452340;Name=Msa1452340
tig0033833 mRNA 22899 23444 22899 ID=Msa1452340-mRNA-1;Parent=Msa1452340;Name=Msa1452340-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|181
tig0033833 exon 22899 23444 22899 ID=Msa1452340-mRNA-1:exon:18524;Parent=Msa1452340-mRNA-1
tig0033833 CDS 22899 23444 22899 ID=Msa1452340-mRNA-1:cds;Parent=Msa1452340-mRNA-1
Gene Sequence

>Msa1452340

ATGGGTCGTCGCAAAATTGCGATTGCGAGGGTGAGAGACCCTATCATAAGGCAGGTTACATTCTCTAAGCGTCGAACAGGATTATTCAAGAAGGCAAATGAACTTGCCATCTTGTGCGGGGCAGAAATTGCTATTGTTGTGTTCTCCCCTGGGAATAAGCCTTACTCTTTCGGGCACCCAAGTGTTGATGATGTTGCATCCAAATTTCTTGAAGGAGAGCTCAACCTAGATGATGGCATAGGAAGCTCATCTTCTGAAGTTCCAAACAGAGAGGATCTGAATCAACAACTTGAAGATGTGCTAGCTCAACTAAAGGAGGCTGAAAATGAAGCTAGGGCACATGATGAGATCCTAGAAGAATACAAACCAACTGAACTCACTCAACTTGAGGATTTGAAAGATTCATATCAGAAATTGAAGGAAATGGTGAGATCACGTCTTAGTGATTTAGAAACAACTGAATCTATGTTACTTCTTGCAGAGAAACCGGTGGTTGGAACAAAAAACAAAGTCGCAAGAAAGAAAGGAAAACAACCAATGCTTTAG
Protein sequence

>Msa1452340

MGRRKIAIARVRDPIIRQVTFSKRRTGLFKKANELAILCGAEIAIVVFSPGNKPYSFGHPSVDDVASKFLEGELNLDDGIGSSSSEVPNREDLNQQLEDVLAQLKEAENEARAHDEILEEYKPTELTQLEDLKDSYQKLKEMVRSRLSDLETTESMLLLAEKPVVGTKNKVARKKGKQPML*