AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1453970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1453970 MtrunA17_Chr8g0355091 92.827 237 17 0 1 237 1 237 1.04e-164 454
Msa1453970 MtrunA17_Chr1g0206701 96.429 224 8 0 1 224 1 224 1.22e-162 449
Msa1453970 MtrunA17_Chr1g0206721 90.868 219 20 0 1 219 1 219 3.67e-150 417
Msa1453970 MtrunA17_Chr2g0292791 88.608 237 27 0 1 237 1 237 4.05e-149 415
Msa1453970 MtrunA17_Chr1g0149391 89.873 237 24 0 1 237 1 237 1.99e-147 410
Msa1453970 MtrunA17_Chr3g0099421 85.388 219 32 0 1 219 26 244 1.02e-141 397
Msa1453970 MtrunA17_Chr1g0206691 85.455 220 32 0 18 237 1 220 1.19e-139 390
Msa1453970 MtrunA17_Chr3g0099411 80.365 219 24 1 1 219 1 200 1.63e-124 352
Msa1453970 MtrunA17_Chr2g0300441 71.730 237 66 1 1 237 1 236 2.01e-121 345
Msa1453970 MtrunA17_Chr3g0089141 73.077 234 45 3 1 224 1 226 7.07e-118 335
Msa1453970 MtrunA17_Chr1g0208561 73.077 234 45 3 1 224 1 226 7.78e-117 333
Msa1453970 MtrunA17_Chr1g0206991 86.813 182 24 0 1 182 1 182 1.90e-116 330
Msa1453970 MtrunA17_Chr5g0422941 65.823 237 81 0 1 237 1 237 2.33e-115 329
Msa1453970 MtrunA17_Chr2g0325971 72.650 234 46 3 1 224 1 226 2.86e-115 328
Msa1453970 MtrunA17_Chr1g0188671 68.889 225 70 0 1 225 39 263 3.40e-114 328
Msa1453970 MtrunA17_Chr2g0317451 65.678 236 81 0 1 236 1 236 1.46e-113 325
Msa1453970 MtrunA17_Chr2g0317481 65.678 236 81 0 1 236 1 236 3.36e-113 324
Msa1453970 MtrunA17_Chr1g0187361 69.196 224 69 0 1 224 1 224 9.11e-113 323
Msa1453970 MtrunA17_Chr1g0208581 74.537 216 47 1 1 216 1 208 4.29e-112 321
Msa1453970 MtrunA17_Chr5g0422421 68.304 224 71 0 1 224 1 224 3.89e-111 318
Msa1453970 MtrunA17_Chr5g0419601 68.354 237 75 0 1 237 1 237 1.01e-110 317
Msa1453970 MtrunA17_Chr7g0238991 65.471 223 75 2 16 237 27 248 3.51e-99 289
Msa1453970 MtrunA17_Chr2g0300421 65.644 163 55 1 1 162 1 163 3.23e-68 207
Msa1453970 MtrunA17_Chr3g0085241 51.323 189 82 1 3 191 35 213 1.15e-65 204
Msa1453970 MtrunA17_Chr3g0119901 52.778 180 84 1 7 186 7 185 8.25e-65 200
Msa1453970 MtrunA17_Chr3g0089151 75.194 129 32 0 1 129 1 129 1.71e-64 196
Msa1453970 MtrunA17_Chr3g0111931 67.647 102 33 0 21 122 2 103 1.11e-45 148
Msa1453970 MtrunA17_Chr2g0333981 40.351 171 92 2 5 172 8 171 2.68e-41 139
Msa1453970 MtrunA17_Chr8g0379021 42.169 166 86 2 5 167 8 166 5.27e-41 138
Msa1453970 MtrunA17_Chr4g0018951 45.161 155 73 3 5 159 8 150 2.38e-35 123
Msa1453970 MtrunA17_Chr1g0187351 81.818 66 12 0 18 83 1 66 3.71e-33 115
Msa1453970 MtrunA17_Chr4g0071601 39.227 181 90 4 5 172 8 181 5.28e-32 115
Msa1453970 MtrunA17_Chr3g0111841 86.441 59 8 0 15 73 2 60 9.80e-31 108
Msa1453970 MtrunA17_Chr3g0111831 72.131 61 17 0 16 76 11 71 3.87e-25 94.7
Msa1453970 MtrunA17_Chr1g0175601 45.946 111 57 2 9 118 2 110 2.74e-24 95.5
Msa1453970 MtrunA17_Chr1g0169761 60.870 69 27 0 9 77 2 70 1.41e-23 93.6
Msa1453970 MtrunA17_Chr8g0376821 60.870 69 27 0 9 77 2 70 3.40e-23 92.4
Msa1453970 MtrunA17_Chr4g0074101 40.517 116 54 3 9 109 2 117 8.25e-23 92.0
Msa1453970 MtrunA17_Chr8g0357771 42.063 126 68 2 9 131 2 125 1.89e-22 90.5
Msa1453970 MtrunA17_Chr1g0175611 45.545 101 53 1 9 109 2 100 1.95e-22 90.1
Msa1453970 MtrunA17_Chr1g0180591 45.536 112 56 3 9 118 2 110 2.07e-22 90.5
Msa1453970 MtrunA17_Chr8g0356071 40.171 117 63 2 9 125 2 111 2.80e-21 87.0
Msa1453970 MtrunA17_Chr4g0052061 41.509 106 60 1 9 114 2 105 2.46e-20 84.3
Msa1453970 MtrunA17_Chr4g0049901 33.526 173 88 4 10 161 29 195 1.51e-19 84.3
Msa1453970 MtrunA17_Chr3g0077501 52.941 68 32 0 9 76 2 69 4.75e-19 82.4
Msa1453970 MtrunA17_Chr3g0097101 42.453 106 51 1 3 108 11 106 9.27e-19 82.4
Msa1453970 MtrunA17_Chr4g0052081 41.509 106 61 1 9 113 2 107 2.04e-18 79.7
Msa1453970 MtrunA17_Chr4g0057151 50.685 73 36 0 10 82 3 75 3.78e-18 79.7
Msa1453970 MtrunA17_Chr8g0351051 33.533 167 97 4 9 167 2 162 8.42e-18 79.7
Msa1453970 MtrunA17_Chr5g0427401 51.471 68 33 0 9 76 2 69 1.17e-17 79.0
Msa1453970 MtrunA17_Chr6g0474371 49.275 69 34 1 9 76 2 70 1.64e-17 77.8
Msa1453970 MtrunA17_Chr2g0284911 30.270 185 100 4 9 167 17 198 2.28e-17 78.6
Msa1453970 MtrunA17_Chr3g0134451 33.333 171 90 6 9 162 2 165 2.41e-17 79.3
Msa1453970 MtrunA17_Chr8g0351041 47.436 78 41 0 10 87 3 80 3.38e-17 76.3
Msa1453970 MtrunA17_Chr8g0380021 51.471 68 33 0 9 76 18 85 4.01e-17 77.8
Msa1453970 MtrunA17_Chr5g0412271 29.384 211 130 6 9 201 2 211 8.69e-17 76.6
Msa1453970 MtrunA17_Chr2g0279821 48.529 68 35 0 9 76 2 69 1.02e-16 76.6
Msa1453970 MtrunA17_Chr4g0061691 47.826 69 35 1 9 76 2 70 1.11e-16 76.3
Msa1453970 MtrunA17_Chr5g0412461 48.529 68 35 0 9 76 2 69 1.20e-16 76.3
Msa1453970 MtrunA17_Chr1g0204111 50.000 68 34 0 9 76 18 85 1.35e-16 76.6
Msa1453970 MtrunA17_Chr8g0351031 47.436 78 41 0 10 87 3 80 1.64e-16 75.9
Msa1453970 MtrunA17_Chr8g0345001 32.911 158 93 3 8 159 17 167 1.81e-16 74.7
Msa1453970 MtrunA17_Chr7g0246431 38.182 110 66 1 10 119 3 110 1.82e-16 75.5
Msa1453970 MtrunA17_Chr7g0220121 26.291 213 143 5 9 207 2 214 3.96e-16 75.1
Msa1453970 MtrunA17_Chr4g0020221 51.471 68 33 0 9 76 2 69 5.19e-16 75.1
Msa1453970 MtrunA17_Chr4g0049541 47.059 68 36 0 9 76 2 69 6.47e-16 73.9
Msa1453970 MtrunA17_Chr6g0455511 49.275 69 34 1 9 76 2 70 9.40e-16 74.3
Msa1453970 MtrunA17_Chr8g0366231 40.964 83 46 1 9 91 2 81 9.49e-16 73.9
Msa1453970 MtrunA17_Chr7g0220111 49.275 69 34 1 9 76 2 70 1.04e-15 73.9
Msa1453970 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 1.72e-15 73.2
Msa1453970 MtrunA17_Chr5g0411691 48.529 68 35 0 9 76 2 69 2.02e-15 73.2
Msa1453970 MtrunA17_Chr1g0173161 52.459 61 29 0 9 69 2 62 2.10e-15 69.3
Msa1453970 MtrunA17_Chr5g0420081 45.070 71 36 1 9 79 2 69 2.63e-15 72.8
Msa1453970 MtrunA17_Chr5g0425191 56.604 53 23 0 9 61 2 54 3.21e-15 69.3
Msa1453970 MtrunA17_Chr3g0093131 33.566 143 78 4 26 159 36 170 3.21e-15 71.6
Msa1453970 MtrunA17_Chr2g0308251 47.826 69 36 0 9 77 2 70 3.78e-15 68.6
Msa1453970 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 6.91e-15 71.2
Msa1453970 MtrunA17_Chr4g0044071 52.632 57 27 0 9 65 2 58 8.72e-15 68.6
Msa1453970 MtrunA17_Chr8g0377561 53.571 56 26 0 9 64 2 57 1.56e-14 67.4
Msa1453970 MtrunA17_Chr3g0122251 41.237 97 54 1 9 105 2 95 1.90e-14 70.5
Msa1453970 MtrunA17_Chr1g0164791 47.143 70 35 1 9 76 2 71 2.52e-14 70.1
Msa1453970 MtrunA17_Chr3g0125241 44.286 70 37 1 9 76 27 96 2.54e-14 69.3
Msa1453970 MtrunA17_Chr1g0159661 46.970 66 34 1 9 74 2 66 2.75e-14 68.9
Msa1453970 MtrunA17_Chr4g0061671 50.877 57 28 0 9 65 2 58 3.14e-14 68.9
Msa1453970 MtrunA17_Chr7g0246381 52.632 57 27 0 9 65 2 58 5.36e-14 65.1
Msa1453970 MtrunA17_Chr5g0427921 49.123 57 29 0 9 65 2 58 6.18e-14 64.7
Msa1453970 MtrunA17_Chr3g0142191 47.619 63 33 0 9 71 2 64 1.27e-13 67.8
Msa1453970 MtrunA17_Chr4g0025531 32.278 158 95 3 5 162 5 150 1.04e-12 65.5
Msa1453970 MtrunA17_Chr4g0060841 26.738 187 115 7 9 183 2 178 5.34e-12 64.7
Msa1453970 MtrunA17_Chr5g0417661 42.029 69 34 1 9 77 57 119 5.99e-12 61.2
Msa1453970 MtrunA17_Chr4g0018421 40.000 70 41 1 9 77 2 71 1.09e-11 62.0
Msa1453970 MtrunA17_Chr2g0302091 31.875 160 81 7 7 156 36 177 1.28e-11 62.0
Msa1453970 MtrunA17_Chr1g0166611 34.513 113 64 2 20 132 17 119 5.48e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1453970 AT5G60440.1 54.255 188 79 3 5 189 3 186 1.51e-61 195
Msa1453970 AT2G24840.1 49.693 163 71 4 6 162 60 217 6.34e-44 149
Msa1453970 AT1G01530.1 40.476 210 102 4 4 192 2 209 2.16e-40 139
Msa1453970 AT1G65360.1 38.222 225 124 6 5 223 3 218 1.69e-39 136
Msa1453970 AT4G36590.1 45.732 164 79 4 5 160 3 164 1.58e-38 134
Msa1453970 AT2G34440.1 45.299 117 55 2 9 121 2 113 7.37e-27 102
Msa1453970 AT3G66656.1 41.985 131 71 2 9 134 2 132 7.52e-26 99.8
Msa1453970 AT3G04100.1 31.579 152 100 2 2 149 7 158 9.45e-25 97.8
Msa1453970 AT1G72350.1 35.374 147 62 3 9 155 43 156 9.16e-23 92.8
Msa1453970 AT1G28460.1 30.636 173 110 3 5 174 4 169 2.63e-20 85.5
Msa1453970 AT4G22950.2 49.351 77 39 0 10 86 3 79 3.15e-19 82.0
Msa1453970 AT4G09960.2 46.512 86 45 1 9 93 2 87 4.21e-19 82.8
Msa1453970 AT4G09960.1 46.512 86 45 1 9 93 2 87 4.79e-19 83.2
Msa1453970 AT4G18960.1 28.689 244 136 8 5 226 15 242 4.87e-19 83.6
Msa1453970 AT4G09960.6 46.512 86 45 1 9 93 3 88 5.03e-19 83.2
Msa1453970 AT1G29962.1 29.651 172 114 4 5 169 4 175 6.79e-19 81.6
Msa1453970 AT4G09960.5 46.512 86 45 1 9 93 12 97 6.80e-19 82.8
Msa1453970 AT4G09960.3 46.512 86 45 1 9 93 28 113 8.85e-19 82.8
Msa1453970 AT2G45650.1 52.941 68 32 0 9 76 2 69 1.13e-18 82.4
Msa1453970 AT2G45660.2 52.941 68 32 0 10 77 3 70 1.29e-18 80.1
Msa1453970 AT4G22950.3 50.000 76 38 0 10 85 3 78 1.36e-18 81.6
Msa1453970 AT4G22950.1 50.000 76 38 0 10 85 3 78 1.36e-18 81.6
Msa1453970 AT4G09960.4 46.512 86 45 1 9 93 97 182 3.08e-18 82.4
Msa1453970 AT2G45660.1 52.941 68 32 0 10 77 3 70 3.37e-18 80.5
Msa1453970 AT2G22540.3 51.471 68 33 0 9 76 2 69 1.82e-17 79.0
Msa1453970 AT2G22540.1 51.471 68 33 0 9 76 2 69 1.82e-17 79.0
Msa1453970 AT5G51870.2 53.731 67 31 0 10 76 3 69 2.40e-17 77.0
Msa1453970 AT4G24540.1 36.486 148 77 5 9 156 2 132 2.60e-17 78.2
Msa1453970 AT5G51870.1 53.731 67 31 0 10 76 3 69 2.85e-17 77.8
Msa1453970 AT3G57230.2 47.059 68 36 0 9 76 2 69 4.35e-17 75.9
Msa1453970 AT2G42830.1 47.368 76 40 0 1 76 9 84 5.10e-17 77.8
Msa1453970 AT5G51870.5 50.000 72 36 0 5 76 21 92 5.73e-17 76.6
Msa1453970 AT2G42830.2 47.368 76 40 0 1 76 9 84 5.88e-17 77.8
Msa1453970 AT1G22130.1 36.441 118 73 2 9 125 2 118 6.11e-17 79.0
Msa1453970 AT3G58780.1 50.704 71 35 0 6 76 14 84 6.71e-17 77.8
Msa1453970 AT5G51870.4 53.731 67 31 0 10 76 3 69 6.77e-17 77.0
Msa1453970 AT3G58780.5 50.704 71 35 0 6 76 20 90 6.90e-17 77.8
Msa1453970 AT3G61120.1 51.471 68 33 0 9 76 2 69 8.15e-17 77.4
Msa1453970 AT5G51870.3 53.731 67 31 0 10 76 13 79 8.28e-17 77.0
Msa1453970 AT5G10140.2 50.725 69 33 1 9 76 2 70 8.49e-17 75.5
Msa1453970 AT3G57390.3 50.000 68 34 0 9 76 2 69 8.69e-17 77.0
Msa1453970 AT4G37940.4 48.529 68 35 0 9 76 2 69 9.64e-17 76.6
Msa1453970 AT5G62165.14 49.254 67 34 0 10 76 3 69 9.82e-17 73.9
Msa1453970 AT4G37940.1 48.529 68 35 0 9 76 2 69 1.04e-16 76.6
Msa1453970 AT1G77980.1 38.095 105 64 1 9 112 2 106 1.19e-16 78.2
Msa1453970 AT4G37940.3 48.529 68 35 0 9 76 2 69 1.23e-16 75.5
Msa1453970 AT1G77950.3 47.368 76 38 2 9 83 2 76 1.24e-16 77.0
Msa1453970 AT1G77950.2 47.368 76 38 2 9 83 2 76 1.24e-16 77.0
Msa1453970 AT1G77950.1 47.368 76 38 2 9 83 2 76 1.24e-16 77.0
Msa1453970 AT1G77950.4 47.368 76 38 2 9 83 2 76 1.24e-16 77.0
Msa1453970 AT5G10140.4 50.725 69 33 1 9 76 2 70 1.31e-16 75.5
Msa1453970 AT3G58780.4 50.704 71 35 0 6 76 14 84 1.35e-16 77.4
Msa1453970 AT5G62165.6 49.254 67 34 0 10 76 3 69 1.56e-16 74.7
Msa1453970 AT5G62165.9 49.254 67 34 0 10 76 3 69 1.56e-16 74.7
Msa1453970 AT5G62165.7 49.254 67 34 0 10 76 3 69 1.56e-16 74.7
Msa1453970 AT5G62165.8 49.254 67 34 0 10 76 3 69 1.56e-16 74.7
Msa1453970 AT5G62165.13 49.254 67 34 0 10 76 3 69 1.56e-16 74.7
Msa1453970 AT5G10140.1 50.725 69 33 1 9 76 2 70 1.59e-16 75.5
Msa1453970 AT3G57230.1 47.059 68 36 0 9 76 2 69 1.61e-16 76.6
Msa1453970 AT3G57230.4 47.059 68 36 0 9 76 2 69 1.61e-16 76.6
Msa1453970 AT5G10140.3 50.725 69 33 1 9 76 2 70 1.67e-16 75.1
Msa1453970 AT5G62165.17 49.254 67 34 0 10 76 3 69 1.86e-16 74.3
Msa1453970 AT5G62165.12 49.254 67 34 0 10 76 3 69 1.86e-16 74.3
Msa1453970 AT5G62165.11 49.254 67 34 0 10 76 3 69 1.86e-16 74.3
Msa1453970 AT3G54340.1 30.128 156 85 3 9 162 2 135 1.89e-16 76.3
Msa1453970 AT5G13790.2 43.011 93 44 1 9 101 2 85 2.13e-16 76.6
Msa1453970 AT3G57390.1 50.000 68 34 0 9 76 2 69 2.20e-16 76.3
Msa1453970 AT5G13790.1 51.471 68 33 0 9 76 2 69 2.67e-16 76.3
Msa1453970 AT4G11880.2 48.611 72 36 1 10 80 3 74 3.82e-16 74.3
Msa1453970 AT4G11880.3 48.611 72 36 1 10 80 3 74 3.82e-16 74.3
Msa1453970 AT2G22630.1 47.059 68 36 0 9 76 2 69 3.89e-16 75.1
Msa1453970 AT2G22630.2 47.059 68 36 0 9 76 2 69 3.89e-16 75.1
Msa1453970 AT1G69120.2 40.659 91 51 1 9 99 2 89 4.05e-16 75.1
Msa1453970 AT5G51860.2 52.239 67 32 0 10 76 3 69 5.06e-16 74.3
Msa1453970 AT1G28450.1 29.371 143 95 3 5 141 4 146 5.81e-16 73.9
Msa1453970 AT5G51860.1 52.239 67 32 0 10 76 3 69 6.45e-16 74.3
Msa1453970 AT5G60910.1 49.296 71 33 1 9 79 2 69 6.85e-16 74.7
Msa1453970 AT5G62165.10 49.254 67 34 0 10 76 3 69 7.18e-16 73.9
Msa1453970 AT5G62165.4 49.254 67 34 0 10 76 3 69 7.18e-16 73.9
Msa1453970 AT5G62165.3 49.254 67 34 0 10 76 3 69 7.62e-16 73.9
Msa1453970 AT5G62165.1 49.254 67 34 0 10 76 3 69 7.62e-16 73.9
Msa1453970 AT5G62165.2 49.254 67 34 0 10 76 3 69 7.62e-16 73.9
Msa1453970 AT4G11880.4 48.611 72 36 1 10 80 3 74 9.00e-16 73.9
Msa1453970 AT4G11880.1 48.611 72 36 1 10 80 3 74 9.00e-16 73.9
Msa1453970 AT1G69120.1 40.659 91 51 1 9 99 2 89 9.60e-16 74.7
Msa1453970 AT1G26310.1 47.826 69 35 1 9 76 2 70 1.01e-15 74.7
Msa1453970 AT3G30260.1 46.377 69 36 1 9 76 2 70 1.32e-15 73.9
Msa1453970 AT5G23260.1 44.330 97 46 3 2 90 9 105 1.75e-15 73.9
Msa1453970 AT5G23260.4 44.330 97 46 3 2 90 9 105 2.06e-15 73.9
Msa1453970 AT5G20240.2 47.143 70 35 1 9 76 2 71 2.64e-15 71.2
Msa1453970 AT5G15800.1 49.275 69 34 1 9 76 2 70 2.71e-15 73.2
Msa1453970 AT5G23260.3 45.455 88 42 2 9 90 2 89 3.42e-15 72.8
Msa1453970 AT5G23260.2 45.455 88 42 2 9 90 2 89 3.79e-15 72.8
Msa1453970 AT2G22540.2 50.000 68 29 1 9 76 2 64 4.48e-15 72.4
Msa1453970 AT5G15800.2 49.275 69 34 1 9 76 2 70 4.62e-15 72.8
Msa1453970 AT5G20240.1 47.143 70 35 1 9 76 2 71 5.32e-15 71.6
Msa1453970 AT1G17310.1 51.899 79 36 1 8 86 47 123 6.11e-15 71.6
Msa1453970 AT2G14210.1 46.377 69 36 1 9 76 2 70 8.01e-15 71.6
Msa1453970 AT1G17310.2 51.899 79 36 1 8 86 58 134 8.11e-15 71.6
Msa1453970 AT2G14210.2 46.377 69 36 1 9 76 2 70 1.04e-14 71.2
Msa1453970 AT5G65050.5 28.646 192 120 9 9 193 2 183 1.21e-14 70.1
Msa1453970 AT1G24260.3 29.114 237 140 8 9 234 2 221 1.74e-14 70.9
Msa1453970 AT3G58780.2 53.333 60 28 0 6 65 14 73 1.82e-14 70.9
Msa1453970 AT3G02310.2 47.826 69 35 1 9 76 2 70 2.05e-14 70.1
Msa1453970 AT5G65050.2 46.377 69 36 1 9 76 2 70 2.08e-14 69.3
Msa1453970 AT3G58780.3 53.333 60 28 0 6 65 14 73 2.43e-14 70.9
Msa1453970 AT5G65050.1 29.897 194 112 7 9 193 2 180 2.51e-14 69.3
Msa1453970 AT1G24260.2 27.490 251 140 9 9 234 2 235 3.13e-14 70.5
Msa1453970 AT5G65050.3 46.377 69 36 1 9 76 2 70 4.05e-14 68.9
Msa1453970 AT2G03710.3 47.143 70 35 2 9 76 2 71 4.07e-14 68.9
Msa1453970 AT3G02310.1 47.826 69 35 1 9 76 2 70 4.89e-14 69.7
Msa1453970 AT2G03710.2 47.143 70 35 2 9 76 2 71 7.68e-14 69.3
Msa1453970 AT5G65060.3 46.377 69 36 1 9 76 2 70 7.88e-14 68.2
Msa1453970 AT5G65060.2 46.377 69 36 1 9 76 2 70 8.16e-14 68.2
Msa1453970 AT2G03710.1 47.143 70 35 2 9 76 2 71 8.24e-14 69.3
Msa1453970 AT1G24260.1 53.571 56 26 0 9 64 2 57 9.62e-14 68.9
Msa1453970 AT5G65060.1 46.377 69 36 1 9 76 2 70 9.81e-14 68.2
Msa1453970 AT1G47760.1 34.127 126 66 4 9 131 2 113 1.07e-13 67.8
Msa1453970 AT1G71692.1 44.286 70 38 1 9 77 2 71 1.34e-13 67.8
Msa1453970 AT5G65070.4 42.029 69 39 1 9 76 2 70 3.36e-13 65.5
Msa1453970 AT5G65070.1 42.029 69 39 1 9 76 2 70 6.20e-13 65.9
Msa1453970 AT5G65070.5 42.029 69 39 1 9 76 2 70 1.09e-12 65.5
Msa1453970 AT5G65070.2 42.029 69 39 1 9 76 2 70 1.21e-12 65.5
Msa1453970 AT5G65070.3 47.368 57 30 0 9 65 2 58 5.58e-12 63.9
Msa1453970 AT1G18750.4 25.806 186 119 6 9 177 2 185 9.55e-12 64.3
Msa1453970 AT1G18750.1 25.806 186 119 6 9 177 2 185 1.09e-11 64.3
Msa1453970 AT1G69540.1 32.727 110 66 3 9 117 2 104 1.45e-11 63.5
Msa1453970 AT1G69540.2 32.727 110 66 3 9 117 2 104 1.63e-11 63.5
Msa1453970 AT4G37435.1 40.278 72 42 1 9 79 2 73 1.77e-11 61.6
Msa1453970 AT1G18750.3 37.333 75 45 1 9 81 2 76 3.59e-11 62.8
Msa1453970 AT2G26320.1 40.000 70 40 1 9 76 18 87 4.06e-11 58.9
Msa1453970 AT5G65080.3 42.029 69 39 1 9 76 9 77 5.59e-11 60.5
Msa1453970 AT2G03060.2 39.286 84 48 3 9 90 2 84 6.00e-11 62.0
Msa1453970 AT2G03060.3 39.286 84 48 3 9 90 2 84 6.23e-11 62.0
Msa1453970 AT2G03060.7 39.286 84 48 3 9 90 2 84 6.23e-11 62.0
Msa1453970 AT2G03060.1 39.286 84 48 3 9 90 2 84 6.23e-11 62.0
Msa1453970 AT5G65080.2 43.548 62 35 0 1 62 1 62 8.30e-11 60.1

Find 53 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGAGTTTGCGGAGGATT+TGG 0.289021 tig0034984:+820 None:intergenic
TGGTGGGCTGGTCCCGTTGA+TGG 0.303436 tig0034984:-1006 Msa1453970:CDS
GATCAACCAGCTACTGGATA+TGG 0.309226 tig0034984:-1085 Msa1453970:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 tig0034984:+1163 None:intergenic
ATGTTGCAACCTCACTTGTT+TGG 0.376512 tig0034984:-769 Msa1453970:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 tig0034984:-914 Msa1453970:CDS
GAGGAGACTAAGAAACTTGT+TGG 0.386198 tig0034984:-943 Msa1453970:CDS
TTGTTGGACATCATGCTGAT+AGG 0.402994 tig0034984:-927 Msa1453970:CDS
GGGCTCAGATCAAAAGAATC+TGG 0.407516 tig0034984:+708 None:intergenic
CTTGTTTGGCTTCAACAATA+CGG 0.429938 tig0034984:-755 Msa1453970:CDS
GTCCCGTTGATGGGATGAAT+AGG 0.432754 tig0034984:-996 Msa1453970:CDS
GCGGAGGATTTGGTTGATGA+TGG 0.439291 tig0034984:+830 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 tig0034984:-1005 Msa1453970:CDS
TCCCGTTGATGGGATGAATA+GGG 0.453040 tig0034984:-995 Msa1453970:CDS
TCTTCTCCATATCCAGTAGC+TGG 0.455839 tig0034984:+1079 None:intergenic
AGGCGACCGAGAGTCAGTTT+TGG 0.458130 tig0034984:-1026 Msa1453970:CDS
TTGTTTGGCTTCAACAATAC+GGG 0.463078 tig0034984:-754 Msa1453970:CDS
GCCCTATTCATCCCATCAAC+GGG 0.481029 tig0034984:+994 None:intergenic
AGTATTGAGCTCGCGCACAT+TGG 0.504609 tig0034984:+1119 None:intergenic
GTTGGAAACATTTGAGTTTG+CGG 0.508183 tig0034984:+811 None:intergenic
GACTCAGATCAACCAGCTAC+TGG 0.508380 tig0034984:-1091 Msa1453970:CDS
GTCTATGACCGTATCAACAT+TGG 0.509296 tig0034984:+1209 None:intergenic
GCAGAGAGTGCAAAGCTCAC+TGG 0.516982 tig0034984:+1293 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 tig0034984:+993 None:intergenic
AACAAGTGAGGTTGCAACAT+AGG 0.539918 tig0034984:+772 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.542196 tig0034984:+1210 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 tig0034984:-1217 Msa1453970:CDS
GCTCGCGCACATTGGCGCTA+CGG 0.552531 tig0034984:+1127 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 tig0034984:-1329 Msa1453970:CDS
CTTCAACCATGTCGAGTGGA+AGG 0.555433 tig0034984:-1416 None:intergenic
GTGGGACTCGAGAGAGATAA+CGG 0.555728 tig0034984:+1187 None:intergenic
AGCCCACCAAAACTGACTCT+CGG 0.565176 tig0034984:+1020 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 tig0034984:-1330 Msa1453970:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 tig0034984:+1240 None:intergenic
AGAGCTGAGCAACTTGCGCA+AGG 0.589828 tig0034984:-1046 Msa1453970:CDS
TGACCGTATCAACATTGGGT+TGG 0.600758 tig0034984:+1214 None:intergenic
AGGTTTGAGTAGGAGCACCC+TGG 0.605264 tig0034984:+896 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 tig0034984:+1316 None:intergenic
GGATTTGGTTGATGATGGAG+AGG 0.611456 tig0034984:+835 None:intergenic
TGTTTGGCTTCAACAATACG+GGG 0.616084 tig0034984:-753 Msa1453970:CDS
AGTGAGCTTTGCACTCTCTG+CGG 0.622154 tig0034984:-1291 Msa1453970:CDS
TGAGCTTCAACCATGTCGAG+TGG 0.629588 tig0034984:-1420 None:intergenic
CTCAGATCAAAAGAATCTGG+AGG 0.633945 tig0034984:+711 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 tig0034984:-913 Msa1453970:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 tig0034984:-1154 Msa1453970:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 tig0034984:-1174 Msa1453970:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 tig0034984:+1149 None:intergenic
GGAAACATTTGAGTTTGCGG+AGG 0.647148 tig0034984:+814 None:intergenic
TTGTTGAAGCCAAACAAGTG+AGG 0.651690 tig0034984:+760 None:intergenic
TCAGATCAAAAGAATCTGGA+GGG 0.666536 tig0034984:+712 None:intergenic
TTTGGCTTCAACAATACGGG+GGG 0.687957 tig0034984:-751 Msa1453970:CDS
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 tig0034984:-1405 Msa1453970:CDS
GTTTGGCTTCAACAATACGG+GGG 0.701007 tig0034984:-752 Msa1453970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG + tig0034984:749-768 None:intergenic 20.0%
!!! CTTTTTGAAAAATTCAAGTT+GGG + tig0034984:1156-1175 None:intergenic 20.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG + tig0034984:1157-1176 None:intergenic 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG - tig0034984:1154-1173 Msa1453970:CDS 25.0%
!!! TGAATTTTTCAAAAAGGCTT+TGG - tig0034984:1160-1179 Msa1453970:CDS 25.0%
! AAAAATTGAAAGGTTTGAGT+AGG + tig0034984:1242-1261 None:intergenic 25.0%
!!! ACTCAAACCTTTCAATTTTT+TGG - tig0034984:1242-1261 Msa1453970:CDS 25.0%
! ATTTCCACCAAAAAATTGAA+AGG + tig0034984:1252-1271 None:intergenic 25.0%
!!! TTTCAATTTTTTGGTGGAAA+TGG - tig0034984:1251-1270 Msa1453970:CDS 25.0%
!! ATTTTTCAAAAAGGCTTTGG+AGG - tig0034984:1163-1182 Msa1453970:CDS 30.0%
!!! CAAACCTTTCAATTTTTTGG+TGG - tig0034984:1245-1264 Msa1453970:CDS 30.0%
TCTATGACCGTATCAACATT+GGG + tig0034984:918-937 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG + tig0034984:964-983 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG + tig0034984:965-984 None:intergenic 35.0%
! GTTGGAAACATTTGAGTTTG+CGG + tig0034984:1317-1336 None:intergenic 35.0%
! GGATTCTGAAAAAACTGTGT+TGG + tig0034984:1335-1354 None:intergenic 35.0%
! CTTGTTTGGCTTCAACAATA+CGG - tig0034984:1370-1389 Msa1453970:CDS 35.0%
! TTGTTTGGCTTCAACAATAC+GGG - tig0034984:1371-1390 Msa1453970:CDS 35.0%
AATGAAAATACCTTCTCCCC+AGG + tig0034984:888-907 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG - tig0034984:888-907 Msa1453970:CDS 40.0%
GTCTATGACCGTATCAACAT+TGG + tig0034984:919-938 None:intergenic 40.0%
!! TGCATGGTACCATTGTTTTG+GGG + tig0034984:963-982 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG - tig0034984:971-990 Msa1453970:CDS 40.0%
GAGGAGACTAAGAAACTTGT+TGG - tig0034984:1182-1201 Msa1453970:CDS 40.0%
TTGTTGGACATCATGCTGAT+AGG - tig0034984:1198-1217 Msa1453970:CDS 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG + tig0034984:1308-1327 None:intergenic 40.0%
AACAAGTGAGGTTGCAACAT+AGG + tig0034984:1356-1375 None:intergenic 40.0%
ATGTTGCAACCTCACTTGTT+TGG - tig0034984:1356-1375 Msa1453970:CDS 40.0%
TTGTTGAAGCCAAACAAGTG+AGG + tig0034984:1368-1387 None:intergenic 40.0%
! TGTTTGGCTTCAACAATACG+GGG - tig0034984:1372-1391 Msa1453970:CDS 40.0%
! TCTCAATCTTTTGGCGACCT+CGG + tig0034984:740-759 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + tig0034984:812-831 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG - tig0034984:868-887 Msa1453970:CDS 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG - tig0034984:869-888 Msa1453970:CDS 45.0%
TGGCCAACCCAATGTTGATA+CGG - tig0034984:908-927 Msa1453970:CDS 45.0%
TGACCGTATCAACATTGGGT+TGG + tig0034984:914-933 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG + tig0034984:959-978 None:intergenic 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG + tig0034984:960-979 None:intergenic 45.0%
GTGAGCCTCAATGAATTGCA+TGG + tig0034984:979-998 None:intergenic 45.0%
GATCAACCAGCTACTGGATA+TGG - tig0034984:1040-1059 Msa1453970:CDS 45.0%
TCTTCTCCATATCCAGTAGC+TGG + tig0034984:1049-1068 None:intergenic 45.0%
! TCCCGTTGATGGGATGAATA+GGG - tig0034984:1130-1149 Msa1453970:CDS 45.0%
TGCTGATAGGCTTGTAATCC+AGG - tig0034984:1211-1230 Msa1453970:CDS 45.0%
GCTGATAGGCTTGTAATCCA+GGG - tig0034984:1212-1231 Msa1453970:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG + tig0034984:1293-1312 None:intergenic 45.0%
! GGAAACATTTGAGTTTGCGG+AGG + tig0034984:1314-1333 None:intergenic 45.0%
! GTTTGGCTTCAACAATACGG+GGG - tig0034984:1373-1392 Msa1453970:CDS 45.0%
! TTTGGCTTCAACAATACGGG+GGG - tig0034984:1374-1393 Msa1453970:CDS 45.0%
AGTGAGCTTTGCACTCTCTG+CGG - tig0034984:834-853 Msa1453970:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - tig0034984:867-886 Msa1453970:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG - tig0034984:875-894 Msa1453970:CDS 50.0%
GTGGGACTCGAGAGAGATAA+CGG + tig0034984:941-960 None:intergenic 50.0%
! AGTATTGAGCTCGCGCACAT+TGG + tig0034984:1009-1028 None:intergenic 50.0%
GACTCAGATCAACCAGCTAC+TGG - tig0034984:1034-1053 Msa1453970:CDS 50.0%
!! GACCGAGAGTCAGTTTTGGT+GGG - tig0034984:1103-1122 Msa1453970:CDS 50.0%
! AGCCCACCAAAACTGACTCT+CGG + tig0034984:1108-1127 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG - tig0034984:1129-1148 Msa1453970:CDS 50.0%
GCCCTATTCATCCCATCAAC+GGG + tig0034984:1134-1153 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG + tig0034984:1135-1154 None:intergenic 50.0%
!! GCGGAGGATTTGGTTGATGA+TGG + tig0034984:1298-1317 None:intergenic 50.0%
TCGAGTGGAAGGAAAAGCCG+AGG - tig0034984:720-739 Msa1453970:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - tig0034984:795-814 Msa1453970:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - tig0034984:796-815 Msa1453970:CDS 55.0%
! GCAGAGAGTGCAAAGCTCAC+TGG + tig0034984:835-854 None:intergenic 55.0%
CGAGTCCCACCCCAAAACAA+TGG - tig0034984:951-970 Msa1453970:CDS 55.0%
AGAGCTGAGCAACTTGCGCA+AGG - tig0034984:1079-1098 Msa1453970:CDS 55.0%
! AGGCGACCGAGAGTCAGTTT+TGG - tig0034984:1099-1118 Msa1453970:CDS 55.0%
!! CGACCGAGAGTCAGTTTTGG+TGG - tig0034984:1102-1121 Msa1453970:CDS 55.0%
!! GAGAGTCAGTTTTGGTGGGC+TGG - tig0034984:1107-1126 Msa1453970:CDS 55.0%
!! AGGTTTGAGTAGGAGCACCC+TGG + tig0034984:1232-1251 None:intergenic 55.0%
GCTTCAACAATACGGGGGGA+GGG - tig0034984:1378-1397 Msa1453970:CDS 55.0%
CTTCAACAATACGGGGGGAG+GGG - tig0034984:1379-1398 Msa1453970:CDS 55.0%
TTCAACAATACGGGGGGAGG+GGG - tig0034984:1380-1399 Msa1453970:CDS 55.0%
GGCTTCAACAATACGGGGGG+AGG - tig0034984:1377-1396 Msa1453970:CDS 60.0%
GCTCGCGCACATTGGCGCTA+CGG + tig0034984:1001-1020 None:intergenic 65.0%
!! TGGTGGGCTGGTCCCGTTGA+TGG - tig0034984:1119-1138 Msa1453970:CDS 65.0%
!! GGTGGGCTGGTCCCGTTGAT+GGG - tig0034984:1120-1139 Msa1453970:CDS 65.0%
AACAATACGGGGGGAGGGGG+TGG - tig0034984:1383-1402 Msa1453970:CDS 65.0%
ACGGGGGGAGGGGGTGGATA+TGG - tig0034984:1389-1408 Msa1453970:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0034984 gene 717 1430 717 ID=Msa1453970;Name=Msa1453970
tig0034984 mRNA 717 1430 717 ID=Msa1453970-mRNA-1;Parent=Msa1453970;Name=Msa1453970-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|-1|0|1|-1|1|1|0|237
tig0034984 exon 717 1430 717 ID=Msa1453970-mRNA-1:exon:19433;Parent=Msa1453970-mRNA-1
tig0034984 CDS 717 1430 717 ID=Msa1453970-mRNA-1:cds;Parent=Msa1453970-mRNA-1
Gene Sequence

>Msa1453970

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGCGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGACCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAATGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAGCTACTGGATATGGAGAAGAAACGTGCTGAAGAGCTGAGCAACTTGCGCAAGGCGACCGAGAGTCAGTTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGAGGAGACTAAGAAACTTGTTGGACATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCTTTCAATTTTTTGGTGGAAATGGTTCATCTTCTAACATGCCTCTCCATCATCAACCAAATCCTCCGCAAACTCAAATGTTTCCAACACAGTTTTTTCAGAATCCTATGTTGCAACCTCACTTGTTTGGCTTCAACAATACGGGGGGAGGGGGTGGATATGGACCCTCCAGATTCTTTTGA
Protein sequence

>Msa1453970

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDMEKKRAEELSNLRKATESQFWWAGPVDGMNRAQLEFFKKALEETKKLVGHHADRLVIQGAPTQTFQFFGGNGSSSNMPLHHQPNPPQTQMFPTQFFQNPMLQPHLFGFNNTGGGGGYGPSRFF*