AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1453990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1453990 MtrunA17_Chr8g0355091 89.873 237 24 0 1 237 1 237 1.25e-159 441
Msa1453990 MtrunA17_Chr1g0206701 90.717 237 22 0 1 237 1 237 7.39e-155 429
Msa1453990 MtrunA17_Chr2g0292791 91.561 237 20 0 1 237 1 237 4.37e-152 422
Msa1453990 MtrunA17_Chr1g0206721 91.781 219 18 0 1 219 1 219 6.63e-152 422
Msa1453990 MtrunA17_Chr3g0099421 87.671 219 27 0 1 219 26 244 1.39e-144 404
Msa1453990 MtrunA17_Chr1g0149391 88.608 237 27 0 1 237 1 237 1.80e-144 403
Msa1453990 MtrunA17_Chr1g0206691 82.727 220 38 0 18 237 1 220 2.99e-135 379
Msa1453990 MtrunA17_Chr3g0099411 81.279 219 22 1 1 219 1 200 2.06e-126 357
Msa1453990 MtrunA17_Chr5g0422941 68.354 237 75 0 1 237 1 237 3.64e-121 344
Msa1453990 MtrunA17_Chr2g0300441 71.308 237 67 1 1 237 1 236 2.76e-120 342
Msa1453990 MtrunA17_Chr3g0089141 73.191 235 45 3 1 225 1 227 1.09e-119 340
Msa1453990 MtrunA17_Chr1g0188671 72.000 225 63 0 1 225 39 263 1.97e-119 341
Msa1453990 MtrunA17_Chr1g0208561 73.617 235 44 3 1 225 1 227 2.12e-119 339
Msa1453990 MtrunA17_Chr2g0317451 67.797 236 76 0 1 236 1 236 4.56e-119 338
Msa1453990 MtrunA17_Chr2g0317481 67.797 236 76 0 1 236 1 236 1.18e-118 338
Msa1453990 MtrunA17_Chr1g0206991 88.462 182 21 0 1 182 1 182 1.86e-118 335
Msa1453990 MtrunA17_Chr1g0187361 71.556 225 64 0 1 225 1 225 1.15e-117 335
Msa1453990 MtrunA17_Chr2g0325971 72.766 235 46 3 1 225 1 227 3.50e-117 333
Msa1453990 MtrunA17_Chr5g0419601 70.464 237 70 0 1 237 1 237 3.04e-115 329
Msa1453990 MtrunA17_Chr1g0208581 70.638 235 51 3 1 225 1 227 1.87e-113 324
Msa1453990 MtrunA17_Chr5g0422421 68.889 225 70 0 1 225 1 225 8.26e-113 323
Msa1453990 MtrunA17_Chr7g0238991 63.983 236 83 2 3 237 14 248 1.77e-101 295
Msa1453990 MtrunA17_Chr2g0300421 78.906 128 27 0 1 128 1 128 3.20e-68 207
Msa1453990 MtrunA17_Chr3g0085241 52.381 189 80 1 3 191 35 213 4.80e-67 207
Msa1453990 MtrunA17_Chr3g0089151 75.969 129 31 0 1 129 1 129 2.42e-65 199
Msa1453990 MtrunA17_Chr3g0119901 56.024 166 73 0 7 172 7 172 3.30e-65 201
Msa1453990 MtrunA17_Chr3g0111931 69.608 102 31 0 21 122 2 103 4.04e-47 151
Msa1453990 MtrunA17_Chr2g0333981 38.728 173 96 2 5 174 8 173 2.50e-40 136
Msa1453990 MtrunA17_Chr8g0379021 40.964 166 88 2 5 167 8 166 3.06e-40 136
Msa1453990 MtrunA17_Chr1g0187351 81.818 66 12 0 18 83 1 66 2.41e-34 118
Msa1453990 MtrunA17_Chr4g0018951 43.871 155 75 3 5 159 8 150 4.39e-34 120
Msa1453990 MtrunA17_Chr4g0071601 36.957 184 96 4 5 175 8 184 1.80e-30 111
Msa1453990 MtrunA17_Chr3g0111841 83.051 59 10 0 15 73 2 60 1.33e-29 105
Msa1453990 MtrunA17_Chr1g0175601 46.847 111 56 2 9 118 2 110 1.32e-25 99.0
Msa1453990 MtrunA17_Chr1g0169761 62.319 69 26 0 9 77 2 70 1.05e-24 96.3
Msa1453990 MtrunA17_Chr8g0376821 62.319 69 26 0 9 77 2 70 2.32e-24 95.5
Msa1453990 MtrunA17_Chr3g0111831 68.852 61 19 0 16 76 11 71 4.87e-24 92.0
Msa1453990 MtrunA17_Chr4g0074101 40.517 116 54 2 9 109 2 117 5.07e-24 95.1
Msa1453990 MtrunA17_Chr1g0175611 46.535 101 52 1 9 109 2 100 1.09e-23 93.6
Msa1453990 MtrunA17_Chr8g0357771 42.857 126 67 2 9 131 2 125 1.23e-23 93.6
Msa1453990 MtrunA17_Chr1g0180591 48.544 103 51 2 9 109 2 104 1.24e-23 93.6
Msa1453990 MtrunA17_Chr8g0356071 40.152 132 67 3 9 135 2 126 1.00e-22 90.9
Msa1453990 MtrunA17_Chr4g0052061 40.708 113 64 2 9 120 2 112 1.03e-20 85.5
Msa1453990 MtrunA17_Chr3g0077501 52.941 68 32 0 9 76 2 69 3.31e-19 83.2
Msa1453990 MtrunA17_Chr3g0097101 42.453 106 51 1 3 108 11 106 4.38e-19 83.2
Msa1453990 MtrunA17_Chr4g0049901 57.576 66 28 0 10 75 29 94 8.18e-19 82.4
Msa1453990 MtrunA17_Chr4g0052081 41.509 106 61 1 9 113 2 107 1.16e-18 80.5
Msa1453990 MtrunA17_Chr4g0057151 50.685 73 36 0 10 82 3 75 2.21e-18 80.5
Msa1453990 MtrunA17_Chr8g0351051 33.929 168 95 5 9 167 2 162 1.33e-17 79.3
Msa1453990 MtrunA17_Chr5g0427401 51.471 68 33 0 9 76 2 69 1.42e-17 78.6
Msa1453990 MtrunA17_Chr8g0345001 32.911 158 93 3 8 159 17 167 1.90e-17 77.4
Msa1453990 MtrunA17_Chr2g0284911 41.346 104 60 1 9 112 17 119 2.08e-17 79.0
Msa1453990 MtrunA17_Chr8g0380021 51.471 68 33 0 9 76 18 85 2.27e-17 78.6
Msa1453990 MtrunA17_Chr8g0351041 47.436 78 41 0 10 87 3 80 2.48e-17 76.6
Msa1453990 MtrunA17_Chr6g0474371 49.275 69 34 1 9 76 2 70 2.84e-17 77.0
Msa1453990 MtrunA17_Chr3g0134451 42.308 104 57 3 9 111 2 103 4.47e-17 78.6
Msa1453990 MtrunA17_Chr5g0412461 29.108 213 127 6 9 201 2 210 6.90e-17 76.6
Msa1453990 MtrunA17_Chr4g0061691 47.826 69 35 1 9 76 2 70 1.10e-16 76.3
Msa1453990 MtrunA17_Chr5g0412271 48.529 68 35 0 9 76 2 69 1.18e-16 76.3
Msa1453990 MtrunA17_Chr8g0351031 47.436 78 41 0 10 87 3 80 1.24e-16 76.3
Msa1453990 MtrunA17_Chr2g0279821 48.529 68 35 0 9 76 2 69 1.30e-16 76.3
Msa1453990 MtrunA17_Chr7g0246431 38.182 110 66 1 10 119 3 110 1.35e-16 75.9
Msa1453990 MtrunA17_Chr1g0204111 50.000 68 34 0 9 76 18 85 2.66e-16 75.9
Msa1453990 MtrunA17_Chr3g0093131 34.266 143 77 4 26 159 36 170 2.89e-16 74.3
Msa1453990 MtrunA17_Chr4g0020221 42.683 82 47 0 9 90 2 83 4.84e-16 75.1
Msa1453990 MtrunA17_Chr4g0049541 47.059 68 36 0 9 76 2 69 9.51e-16 73.6
Msa1453990 MtrunA17_Chr6g0455511 49.275 69 34 1 9 76 2 70 9.99e-16 73.9
Msa1453990 MtrunA17_Chr7g0220111 49.275 69 34 1 9 76 2 70 1.09e-15 73.9
Msa1453990 MtrunA17_Chr8g0366231 40.964 83 46 1 9 91 2 81 1.26e-15 73.6
Msa1453990 MtrunA17_Chr5g0411691 48.529 68 35 0 9 76 2 69 1.37e-15 73.6
Msa1453990 MtrunA17_Chr1g0173161 52.459 61 29 0 9 69 2 62 2.28e-15 69.3
Msa1453990 MtrunA17_Chr5g0420081 45.070 71 36 1 9 79 2 69 3.78e-15 72.4
Msa1453990 MtrunA17_Chr5g0425191 56.604 53 23 0 9 61 2 54 4.17e-15 68.9
Msa1453990 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 4.58e-15 72.0
Msa1453990 MtrunA17_Chr2g0308251 47.826 69 36 0 9 77 2 70 5.80e-15 68.2
Msa1453990 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 7.88e-15 70.9
Msa1453990 MtrunA17_Chr7g0246381 48.485 66 29 1 9 69 2 67 1.19e-14 67.0
Msa1453990 MtrunA17_Chr4g0044071 52.632 57 27 0 9 65 2 58 1.27e-14 68.2
Msa1453990 MtrunA17_Chr8g0377561 53.571 56 26 0 9 64 2 57 1.75e-14 67.0
Msa1453990 MtrunA17_Chr3g0122251 41.237 97 54 1 9 105 2 95 1.90e-14 70.5
Msa1453990 MtrunA17_Chr7g0220121 43.478 69 38 1 9 76 2 70 2.03e-14 70.5
Msa1453990 MtrunA17_Chr1g0164791 47.143 70 35 1 9 76 2 71 2.40e-14 70.1
Msa1453990 MtrunA17_Chr5g0427921 49.123 57 29 0 9 65 2 58 3.21e-14 65.5
Msa1453990 MtrunA17_Chr4g0061671 50.877 57 28 0 9 65 2 58 3.62e-14 68.6
Msa1453990 MtrunA17_Chr3g0125241 44.286 70 37 1 9 76 27 96 4.26e-14 68.9
Msa1453990 MtrunA17_Chr1g0159661 46.970 66 34 1 9 74 2 66 4.53e-14 68.2
Msa1453990 MtrunA17_Chr3g0142191 47.619 63 33 0 9 71 2 64 1.63e-13 67.8
Msa1453990 MtrunA17_Chr4g0025531 30.542 203 110 6 5 198 5 185 4.75e-12 63.5
Msa1453990 MtrunA17_Chr5g0417661 42.029 69 34 1 9 77 57 119 1.30e-11 60.5
Msa1453990 MtrunA17_Chr4g0018421 40.000 70 41 1 9 77 2 71 2.23e-11 61.2
Msa1453990 MtrunA17_Chr4g0060841 38.202 89 50 3 9 93 2 89 2.32e-11 62.8
Msa1453990 MtrunA17_Chr2g0302091 30.675 163 85 7 7 159 36 180 2.35e-11 61.2
Msa1453990 MtrunA17_Chr1g0166611 36.190 105 58 2 20 123 17 113 7.06e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1453990 AT5G60440.1 55.376 186 76 3 5 187 3 184 2.28e-63 200
Msa1453990 AT2G24840.1 50.000 164 71 4 6 163 60 218 1.23e-45 153
Msa1453990 AT1G65360.1 40.088 227 121 6 5 225 3 220 1.08e-42 144
Msa1453990 AT1G01530.1 42.632 190 101 3 4 192 2 184 2.08e-42 144
Msa1453990 AT4G36590.1 46.951 164 77 4 5 160 3 164 3.15e-40 139
Msa1453990 AT2G34440.1 38.816 152 81 4 9 155 2 146 7.69e-27 102
Msa1453990 AT3G04100.1 32.716 162 105 3 2 159 7 168 7.91e-26 100
Msa1453990 AT3G66656.1 43.697 119 63 1 9 123 2 120 1.24e-25 99.4
Msa1453990 AT1G72350.1 35.526 152 65 4 9 160 43 161 1.88e-22 92.0
Msa1453990 AT1G28460.1 29.586 169 115 2 5 169 4 172 2.69e-20 85.1
Msa1453990 AT4G22950.2 49.351 77 39 0 10 86 3 79 2.05e-19 82.8
Msa1453990 AT4G09960.2 46.512 86 45 1 9 93 2 87 2.38e-19 83.6
Msa1453990 AT4G09960.1 46.512 86 45 1 9 93 2 87 2.83e-19 83.6
Msa1453990 AT4G09960.6 46.512 86 45 1 9 93 3 88 3.00e-19 83.6
Msa1453990 AT1G29962.1 29.651 172 114 4 5 169 4 175 3.34e-19 82.4
Msa1453990 AT4G09960.5 46.512 86 45 1 9 93 12 97 4.15e-19 83.6
Msa1453990 AT4G22950.3 40.909 110 62 1 10 119 3 109 5.11e-19 82.8
Msa1453990 AT4G22950.1 40.909 110 62 1 10 119 3 109 5.11e-19 82.8
Msa1453990 AT4G09960.3 46.512 86 45 1 9 93 28 113 6.00e-19 83.2
Msa1453990 AT2G45660.2 52.941 68 32 0 10 77 3 70 1.16e-18 80.5
Msa1453990 AT2G45650.1 52.941 68 32 0 9 76 2 69 1.19e-18 82.4
Msa1453990 AT4G18960.1 30.120 249 126 11 5 226 15 242 1.36e-18 82.4
Msa1453990 AT4G09960.4 46.512 86 45 1 9 93 97 182 1.63e-18 83.2
Msa1453990 AT2G22540.3 39.855 138 63 5 9 132 2 133 3.23e-18 80.9
Msa1453990 AT2G22540.1 39.855 138 63 5 9 132 2 133 3.23e-18 80.9
Msa1453990 AT2G45660.1 52.941 68 32 0 10 77 3 70 3.30e-18 80.5
Msa1453990 AT5G51870.2 53.731 67 31 0 10 76 3 69 3.25e-17 77.0
Msa1453990 AT3G57230.2 47.059 68 36 0 9 76 2 69 3.68e-17 75.9
Msa1453990 AT2G42830.2 47.368 76 40 0 1 76 9 84 3.72e-17 78.2
Msa1453990 AT2G42830.1 47.368 76 40 0 1 76 9 84 3.76e-17 78.2
Msa1453990 AT3G58780.1 50.704 71 35 0 6 76 14 84 4.16e-17 78.2
Msa1453990 AT5G51870.1 53.731 67 31 0 10 76 3 69 4.53e-17 77.4
Msa1453990 AT3G58780.5 50.704 71 35 0 6 76 20 90 4.65e-17 78.2
Msa1453990 AT3G61120.1 51.471 68 33 0 9 76 2 69 5.42e-17 77.8
Msa1453990 AT5G51870.5 50.000 72 36 0 5 76 21 92 6.83e-17 76.6
Msa1453990 AT4G24540.1 51.471 68 33 0 9 76 2 69 8.37e-17 77.0
Msa1453990 AT5G51870.4 53.731 67 31 0 10 76 3 69 8.40e-17 76.6
Msa1453990 AT3G58780.4 50.704 71 35 0 6 76 14 84 8.58e-17 77.8
Msa1453990 AT1G17310.1 36.310 168 66 5 8 170 47 178 9.36e-17 76.6
Msa1453990 AT5G51870.3 53.731 67 31 0 10 76 13 79 9.85e-17 76.6
Msa1453990 AT3G57390.3 50.000 68 34 0 9 76 2 69 1.11e-16 76.6
Msa1453990 AT1G17310.2 36.310 168 66 5 8 170 58 189 1.16e-16 76.6
Msa1453990 AT5G10140.2 50.725 69 33 1 9 76 2 70 1.27e-16 75.1
Msa1453990 AT5G62165.14 49.254 67 34 0 10 76 3 69 1.36e-16 73.6
Msa1453990 AT4G37940.4 48.529 68 35 0 9 76 2 69 1.64e-16 75.9
Msa1453990 AT5G62165.17 49.254 67 34 0 10 76 3 69 1.68e-16 74.7
Msa1453990 AT5G62165.12 49.254 67 34 0 10 76 3 69 1.68e-16 74.7
Msa1453990 AT5G62165.11 49.254 67 34 0 10 76 3 69 1.68e-16 74.7
Msa1453990 AT1G22130.1 37.143 105 65 1 9 112 2 106 1.72e-16 77.8
Msa1453990 AT4G37940.1 48.529 68 35 0 9 76 2 69 1.77e-16 76.3
Msa1453990 AT5G13790.2 43.011 93 44 1 9 101 2 85 1.80e-16 77.0
Msa1453990 AT4G37940.3 48.529 68 35 0 9 76 2 69 1.84e-16 75.1
Msa1453990 AT5G10140.4 50.725 69 33 1 9 76 2 70 2.04e-16 75.1
Msa1453990 AT5G62165.6 49.254 67 34 0 10 76 3 69 2.07e-16 74.3
Msa1453990 AT5G62165.9 49.254 67 34 0 10 76 3 69 2.07e-16 74.3
Msa1453990 AT5G62165.7 49.254 67 34 0 10 76 3 69 2.07e-16 74.3
Msa1453990 AT5G62165.8 49.254 67 34 0 10 76 3 69 2.07e-16 74.3
Msa1453990 AT5G62165.13 49.254 67 34 0 10 76 3 69 2.07e-16 74.3
Msa1453990 AT3G57230.1 47.059 68 36 0 9 76 2 69 2.07e-16 76.3
Msa1453990 AT3G57230.4 47.059 68 36 0 9 76 2 69 2.07e-16 76.3
Msa1453990 AT1G77980.1 38.095 105 64 1 9 112 2 106 2.21e-16 77.4
Msa1453990 AT5G10140.1 50.725 69 33 1 9 76 2 70 2.23e-16 75.1
Msa1453990 AT1G28450.1 27.950 161 110 3 5 159 4 164 2.47e-16 74.7
Msa1453990 AT5G10140.3 50.725 69 33 1 9 76 2 70 2.52e-16 74.7
Msa1453990 AT5G13790.1 51.471 68 33 0 9 76 2 69 2.69e-16 76.3
Msa1453990 AT3G57390.1 50.000 68 34 0 9 76 2 69 2.75e-16 76.3
Msa1453990 AT4G11880.2 48.611 72 36 1 10 80 3 74 3.98e-16 73.9
Msa1453990 AT4G11880.3 48.611 72 36 1 10 80 3 74 3.98e-16 73.9
Msa1453990 AT1G69120.2 43.373 83 44 1 9 91 2 81 4.71e-16 75.1
Msa1453990 AT5G51860.2 52.239 67 32 0 10 76 3 69 4.86e-16 74.3
Msa1453990 AT5G62165.10 49.254 67 34 0 10 76 3 69 6.69e-16 73.9
Msa1453990 AT5G62165.4 49.254 67 34 0 10 76 3 69 6.69e-16 73.9
Msa1453990 AT5G62165.3 49.254 67 34 0 10 76 3 69 6.88e-16 74.3
Msa1453990 AT5G62165.1 49.254 67 34 0 10 76 3 69 6.88e-16 74.3
Msa1453990 AT5G62165.2 49.254 67 34 0 10 76 3 69 6.88e-16 74.3
Msa1453990 AT5G60910.1 49.296 71 33 1 9 79 2 69 7.14e-16 74.7
Msa1453990 AT5G51860.1 52.239 67 32 0 10 76 3 69 7.29e-16 73.9
Msa1453990 AT1G77950.3 46.053 76 39 2 9 83 2 76 7.74e-16 74.7
Msa1453990 AT1G77950.2 46.053 76 39 2 9 83 2 76 7.74e-16 74.7
Msa1453990 AT1G77950.1 46.053 76 39 2 9 83 2 76 7.74e-16 74.7
Msa1453990 AT1G77950.4 46.053 76 39 2 9 83 2 76 7.74e-16 74.7
Msa1453990 AT4G11880.4 48.611 72 36 1 10 80 3 74 8.38e-16 74.3
Msa1453990 AT4G11880.1 48.611 72 36 1 10 80 3 74 8.38e-16 74.3
Msa1453990 AT2G22630.1 47.059 68 36 0 9 76 2 69 9.04e-16 74.3
Msa1453990 AT2G22630.2 47.059 68 36 0 9 76 2 69 9.04e-16 74.3
Msa1453990 AT1G69120.1 40.659 91 51 1 9 99 2 89 9.60e-16 74.7
Msa1453990 AT1G26310.1 47.826 69 35 1 9 76 2 70 1.27e-15 74.3
Msa1453990 AT2G22540.2 39.130 138 59 6 9 132 2 128 1.42e-15 73.9
Msa1453990 AT3G30260.1 46.377 69 36 1 9 76 2 70 1.68e-15 73.9
Msa1453990 AT3G54340.1 47.143 70 35 1 9 76 2 71 1.71e-15 73.6
Msa1453990 AT1G24260.3 29.583 240 135 9 9 234 2 221 2.39e-15 73.2
Msa1453990 AT5G15800.1 49.275 69 34 1 9 76 2 70 2.91e-15 73.2
Msa1453990 AT5G15800.2 49.275 69 34 1 9 76 2 70 5.05e-15 72.8
Msa1453990 AT5G20240.2 47.143 70 35 1 9 76 2 71 5.28e-15 70.5
Msa1453990 AT2G14210.1 46.377 69 36 1 9 76 2 70 5.40e-15 72.0
Msa1453990 AT5G20240.1 47.143 70 35 1 9 76 2 71 7.15e-15 71.2
Msa1453990 AT2G14210.2 46.377 69 36 1 9 76 2 70 7.27e-15 72.0
Msa1453990 AT1G24260.2 29.200 250 137 10 9 234 2 235 8.78e-15 72.0
Msa1453990 AT5G65050.2 46.377 69 36 1 9 76 2 70 1.65e-14 69.7
Msa1453990 AT5G23260.4 43.299 97 47 3 2 90 9 105 1.71e-14 71.2
Msa1453990 AT5G23260.1 43.299 97 47 3 2 90 9 105 1.73e-14 71.2
Msa1453990 AT3G02310.2 47.826 69 35 1 9 76 2 70 1.89e-14 70.1
Msa1453990 AT3G58780.2 52.459 61 29 0 6 66 14 74 1.90e-14 70.9
Msa1453990 AT3G58780.3 52.459 61 29 0 6 66 14 74 2.73e-14 70.9
Msa1453990 AT5G65050.5 46.377 69 36 1 9 76 2 70 2.83e-14 69.3
Msa1453990 AT5G65050.3 46.377 69 36 1 9 76 2 70 3.14e-14 69.3
Msa1453990 AT5G23260.2 44.318 88 43 2 9 90 2 89 3.20e-14 70.5
Msa1453990 AT5G23260.3 44.318 88 43 2 9 90 2 89 3.36e-14 70.1
Msa1453990 AT5G65050.1 46.377 69 36 1 9 76 2 70 3.38e-14 68.9
Msa1453990 AT1G24260.1 29.365 252 133 11 9 234 2 234 4.08e-14 70.1
Msa1453990 AT2G03710.3 53.571 56 26 0 9 64 2 57 4.64e-14 68.6
Msa1453990 AT3G02310.1 47.826 69 35 1 9 76 2 70 4.94e-14 69.7
Msa1453990 AT5G65060.2 46.377 69 36 1 9 76 2 70 5.21e-14 68.6
Msa1453990 AT5G65060.3 46.377 69 36 1 9 76 2 70 5.25e-14 68.6
Msa1453990 AT5G65060.1 46.377 69 36 1 9 76 2 70 6.03e-14 68.6
Msa1453990 AT1G47760.1 34.483 116 61 3 9 123 2 103 7.09e-14 68.2
Msa1453990 AT2G03710.2 45.714 70 36 1 9 76 2 71 1.03e-13 68.9
Msa1453990 AT2G03710.1 45.714 70 36 1 9 76 2 71 1.04e-13 68.9
Msa1453990 AT1G71692.1 44.286 70 38 1 9 77 2 71 2.29e-13 67.4
Msa1453990 AT5G65070.4 42.029 69 39 1 9 76 2 70 2.71e-13 65.9
Msa1453990 AT5G65070.1 42.029 69 39 1 9 76 2 70 5.67e-13 65.9
Msa1453990 AT5G65070.2 42.029 69 39 1 9 76 2 70 1.01e-12 65.9
Msa1453990 AT5G65070.5 42.029 69 39 1 9 76 2 70 1.06e-12 65.5
Msa1453990 AT1G18750.4 27.053 207 129 7 9 195 2 206 1.40e-12 66.6
Msa1453990 AT1G18750.1 27.053 207 129 7 9 195 2 206 1.44e-12 66.6
Msa1453990 AT5G65070.3 47.368 57 30 0 9 65 2 58 5.15e-12 63.9
Msa1453990 AT1G18750.3 38.667 75 44 1 9 81 2 76 5.55e-12 65.1
Msa1453990 AT1G46408.1 36.134 119 67 4 10 119 5 123 1.17e-11 63.2
Msa1453990 AT1G69540.1 33.636 110 65 3 9 117 2 104 1.19e-11 63.9
Msa1453990 AT1G69540.2 33.636 110 65 3 9 117 2 104 1.45e-11 63.5
Msa1453990 AT5G65080.3 42.667 75 40 2 5 76 3 77 2.59e-11 61.2
Msa1453990 AT4G37435.1 40.278 72 42 1 9 79 2 73 2.93e-11 60.8
Msa1453990 AT2G26320.1 40.000 70 40 1 9 76 18 87 4.63e-11 58.5
Msa1453990 AT5G65080.2 43.548 62 35 0 1 62 1 62 6.81e-11 60.5
Msa1453990 AT2G03060.3 27.485 171 107 7 9 164 2 170 7.03e-11 61.6
Msa1453990 AT2G03060.7 27.485 171 107 7 9 164 2 170 7.03e-11 61.6
Msa1453990 AT2G03060.1 27.485 171 107 7 9 164 2 170 7.03e-11 61.6
Msa1453990 AT5G27130.1 40.000 85 47 2 2 82 6 90 7.21e-11 61.2
Msa1453990 AT2G03060.2 27.485 171 107 7 9 164 2 170 7.81e-11 61.6

Find 62 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTGGTTTCAACAATA+TGG 0.234944 tig0034984:-12471 Msa1453990:CDS
AGGCGACCGAAACTCAATTT+TGG 0.290261 tig0034984:-12742 Msa1453990:CDS
CTTGTGGAGGATTTGGTTGA+TGG 0.298622 tig0034984:+12543 None:intergenic
ATCTGAGCTTGTGGAGGATT+TGG 0.314155 tig0034984:+12536 None:intergenic
TGGTGGGCTGGTCCCGTTGA+TGG 0.316276 tig0034984:-12722 Msa1453990:CDS
ATTGCATGGTACCATTGTTT+TGG 0.328016 tig0034984:+12879 None:intergenic
TTGTTTGGTTTCAACAATAT+GGG 0.345119 tig0034984:-12470 Msa1453990:CDS
TGACTTATTCAAGAAGGCTT+TGG 0.367517 tig0034984:-12681 Msa1453990:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 tig0034984:-12630 Msa1453990:CDS
ATGTTGCAACCTCATTTGTT+TGG 0.384083 tig0034984:-12485 Msa1453990:CDS
TTGTTGCTCATCATGCTGAT+AGG 0.403840 tig0034984:-12643 Msa1453990:CDS
TCTTCTCGATGTCCAGTAGT+TGG 0.408924 tig0034984:+12795 None:intergenic
GTCCCGTTGATGGGATGAAT+AGG 0.432754 tig0034984:-12712 Msa1453990:CDS
TCTATGACCGTATCAACATT+GGG 0.442152 tig0034984:+12926 None:intergenic
CACTTGCAAGTTGCTTTCGT+TGG 0.444023 tig0034984:+13069 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 tig0034984:-12721 Msa1453990:CDS
TCCCGTTGATGGGATGAATA+GGG 0.453040 tig0034984:-12711 Msa1453990:CDS
AGCCCACCAAAATTGAGTTT+CGG 0.472023 tig0034984:+12736 None:intergenic
CTTCTTGAATAAGTCAAGTT+GGG 0.478689 tig0034984:+12688 None:intergenic
GCCCTATTCATCCCATCAAC+GGG 0.481029 tig0034984:+12710 None:intergenic
GTGGAGGATTTGGTTGATGG+TGG 0.481407 tig0034984:+12546 None:intergenic
AACAAATGAGGTTGCAACAT+AGG 0.496587 tig0034984:+12488 None:intergenic
CCAACTTGACTTATTCAAGA+AGG 0.497643 tig0034984:-12687 Msa1453990:CDS
AGTATTGAGCTCGCGCACAT+TGG 0.504609 tig0034984:+12835 None:intergenic
ATCTATGACCGTATCAACAT+TGG 0.506195 tig0034984:+12925 None:intergenic
CCTTCTTGAATAAGTCAAGT+TGG 0.508816 tig0034984:+12687 None:intergenic
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 tig0034984:+13009 None:intergenic
ACAAATGAGGTTGCAACATA+GGG 0.527904 tig0034984:+12489 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 tig0034984:+12709 None:intergenic
GACTCAGATCAACCAACTAC+TGG 0.537057 tig0034984:-12807 Msa1453990:CDS
AGAGCTGAGCGACTTGCGCA+AGG 0.537990 tig0034984:-12762 Msa1453990:CDS
GGGCTCGGATCAAAAGAATC+CGG 0.538178 tig0034984:+12424 None:intergenic
TGGCCACCCCAATGTTGATA+CGG 0.542985 tig0034984:-12933 Msa1453990:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 tig0034984:-13045 Msa1453990:CDS
TGTTTGGTTTCAACAATATG+GGG 0.556331 tig0034984:-12469 Msa1453990:CDS
TTGTTGAAACCAAACAAATG+AGG 0.558095 tig0034984:+12476 None:intergenic
GGAGGTGGATATGGACCCTC+CGG 0.560213 tig0034984:-12443 Msa1453990:CDS
CTTCAACCATGTCGAGTGGA+AGG 0.562158 tig0034984:-13132 None:intergenic
AACGAAAATACCTTCTCCCC+AGG 0.564049 tig0034984:+12956 None:intergenic
GCTGGAAACATCTGAGCTTG+TGG 0.568464 tig0034984:+12527 None:intergenic
GGATTTGGTTGATGGTGGAG+AGG 0.568530 tig0034984:+12551 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 tig0034984:-13046 Msa1453990:CDS
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 tig0034984:-13007 Msa1453990:CDS
ATGGTGGAGAGGCATGTTCG+AGG 0.589348 tig0034984:+12562 None:intergenic
AGCAACATCTGCACCACAGA+GGG 0.595144 tig0034984:+12994 None:intergenic
TGCGCTTCAACCATGTCGAG+TGG 0.601726 tig0034984:-13136 None:intergenic
TGGTTTGAGTAGGAGCACCC+TGG 0.605264 tig0034984:+12612 None:intergenic
GTTTGGTTTCAACAATATGG+GGG 0.607401 tig0034984:-12468 Msa1453990:CDS
CGAGTCCCGCCCCAAAACAA+TGG 0.608244 tig0034984:-12890 Msa1453990:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 tig0034984:+13032 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 tig0034984:-12629 Msa1453990:CDS
TGGTGGAGAGGCATGTTCGA+GGG 0.636955 tig0034984:+12563 None:intergenic
TTTGGTTTCAACAATATGGG+GGG 0.638238 tig0034984:-12467 Msa1453990:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 tig0034984:-12870 Msa1453990:CDS
GGAAACATCTGAGCTTGTGG+AGG 0.645017 tig0034984:+12530 None:intergenic
CTCGGATCAAAAGAATCCGG+AGG 0.655674 tig0034984:+12427 None:intergenic
TGACCGTATCAACATTGGGG+TGG 0.665619 tig0034984:+12930 None:intergenic
TCGGATCAAAAGAATCCGGA+GGG 0.678771 tig0034984:+12428 None:intergenic
ATGAGCCTCAATGAATTGCA+TGG 0.679678 tig0034984:+12865 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 tig0034984:-13121 Msa1453990:CDS
CTATGACCGTATCAACATTG+GGG 0.709949 tig0034984:+12927 None:intergenic
GAGCAACATCTGCACCACAG+AGG 0.729838 tig0034984:+12993 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG + tig0034984:12465-12484 None:intergenic 20.0%
!!! ATTCAGTTTTTTGTTGGAAA+CGG - tig0034984:12967-12986 Msa1453990:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG - tig0034984:13086-13105 Msa1453990:CDS 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG - tig0034984:13087-13106 Msa1453990:CDS 25.0%
CTTCTTGAATAAGTCAAGTT+GGG + tig0034984:12872-12891 None:intergenic 30.0%
AAAAACTGAATGGTTTGAGT+AGG + tig0034984:12958-12977 None:intergenic 30.0%
!!! CAAACCATTCAGTTTTTTGT+TGG - tig0034984:12961-12980 Msa1453990:CDS 30.0%
GTTTCCAACAAAAAACTGAA+TGG + tig0034984:12968-12987 None:intergenic 30.0%
TTGTTGAAACCAAACAAATG+AGG + tig0034984:13084-13103 None:intergenic 30.0%
! TGTTTGGTTTCAACAATATG+GGG - tig0034984:13088-13107 Msa1453990:CDS 30.0%
TCTATGACCGTATCAACATT+GGG + tig0034984:12634-12653 None:intergenic 35.0%
ATCTATGACCGTATCAACAT+TGG + tig0034984:12635-12654 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG + tig0034984:12680-12699 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG + tig0034984:12681-12700 None:intergenic 35.0%
CCTTCTTGAATAAGTCAAGT+TGG + tig0034984:12873-12892 None:intergenic 35.0%
CCAACTTGACTTATTCAAGA+AGG - tig0034984:12870-12889 Msa1453990:CDS 35.0%
TGACTTATTCAAGAAGGCTT+TGG - tig0034984:12876-12895 Msa1453990:CDS 35.0%
ACAAATGAGGTTGCAACATA+GGG + tig0034984:13071-13090 None:intergenic 35.0%
AACAAATGAGGTTGCAACAT+AGG + tig0034984:13072-13091 None:intergenic 35.0%
ATGTTGCAACCTCATTTGTT+TGG - tig0034984:13072-13091 Msa1453990:CDS 35.0%
! GTTTGGTTTCAACAATATGG+GGG - tig0034984:13089-13108 Msa1453990:CDS 35.0%
! TTTGGTTTCAACAATATGGG+GGG - tig0034984:13090-13109 Msa1453990:CDS 35.0%
CTATGACCGTATCAACATTG+GGG + tig0034984:12633-12652 None:intergenic 40.0%
!! TGCATGGTACCATTGTTTTG+GGG + tig0034984:12679-12698 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG - tig0034984:12687-12706 Msa1453990:CDS 40.0%
ATGAGCCTCAATGAATTGCA+TGG + tig0034984:12695-12714 None:intergenic 40.0%
!! GACCGAAACTCAATTTTGGT+GGG - tig0034984:12819-12838 Msa1453990:CDS 40.0%
AGCCCACCAAAATTGAGTTT+CGG + tig0034984:12824-12843 None:intergenic 40.0%
TTGTTGCTCATCATGCTGAT+AGG - tig0034984:12914-12933 Msa1453990:CDS 40.0%
! TCTCAATCTTTTGGCGACCT+CGG + tig0034984:12456-12475 None:intergenic 45.0%
! CACTTGCAAGTTGCTTTCGT+TGG + tig0034984:12491-12510 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + tig0034984:12528-12547 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG - tig0034984:12584-12603 Msa1453990:CDS 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG - tig0034984:12585-12604 Msa1453990:CDS 45.0%
AACGAAAATACCTTCTCCCC+AGG + tig0034984:12604-12623 None:intergenic 45.0%
!!! GGGGAGAAGGTATTTTCGTT+TGG - tig0034984:12604-12623 Msa1453990:CDS 45.0%
!!! ATGGTACCATTGTTTTGGGG+CGG + tig0034984:12676-12695 None:intergenic 45.0%
GACTCAGATCAACCAACTAC+TGG - tig0034984:12750-12769 Msa1453990:CDS 45.0%
TCTTCTCGATGTCCAGTAGT+TGG + tig0034984:12765-12784 None:intergenic 45.0%
! AGGCGACCGAAACTCAATTT+TGG - tig0034984:12815-12834 Msa1453990:CDS 45.0%
! CGACCGAAACTCAATTTTGG+TGG - tig0034984:12818-12837 Msa1453990:CDS 45.0%
!! GAAACTCAATTTTGGTGGGC+TGG - tig0034984:12823-12842 Msa1453990:CDS 45.0%
! TCCCGTTGATGGGATGAATA+GGG - tig0034984:12846-12865 Msa1453990:CDS 45.0%
TGCTGATAGGCTTGTAATCC+AGG - tig0034984:12927-12946 Msa1453990:CDS 45.0%
GCTGATAGGCTTGTAATCCA+GGG - tig0034984:12928-12947 Msa1453990:CDS 45.0%
! CTTGTGGAGGATTTGGTTGA+TGG + tig0034984:13017-13036 None:intergenic 45.0%
ATCTGAGCTTGTGGAGGATT+TGG + tig0034984:13024-13043 None:intergenic 45.0%
!! GGGTTCTGAAAAAACTGTGC+TGG + tig0034984:13051-13070 None:intergenic 45.0%
AGCAACATCTGCACCACAGA+GGG + tig0034984:12566-12585 None:intergenic 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - tig0034984:12583-12602 Msa1453990:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG - tig0034984:12591-12610 Msa1453990:CDS 50.0%
TGGCCACCCCAATGTTGATA+CGG - tig0034984:12624-12643 Msa1453990:CDS 50.0%
TGACCGTATCAACATTGGGG+TGG + tig0034984:12630-12649 None:intergenic 50.0%
!!! TGGTACCATTGTTTTGGGGC+GGG + tig0034984:12675-12694 None:intergenic 50.0%
! AGTATTGAGCTCGCGCACAT+TGG + tig0034984:12725-12744 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG - tig0034984:12845-12864 Msa1453990:CDS 50.0%
GCCCTATTCATCCCATCAAC+GGG + tig0034984:12850-12869 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG + tig0034984:12851-12870 None:intergenic 50.0%
!! GGATTTGGTTGATGGTGGAG+AGG + tig0034984:13009-13028 None:intergenic 50.0%
!! GTGGAGGATTTGGTTGATGG+TGG + tig0034984:13014-13033 None:intergenic 50.0%
GGAAACATCTGAGCTTGTGG+AGG + tig0034984:13030-13049 None:intergenic 50.0%
GCTGGAAACATCTGAGCTTG+TGG + tig0034984:13033-13052 None:intergenic 50.0%
GGTTTCAACAATATGGGGGG+AGG - tig0034984:13093-13112 Msa1453990:CDS 50.0%
TTCAACAATATGGGGGGAGG+AGG - tig0034984:13096-13115 Msa1453990:CDS 50.0%
TCGAGTGGAAGGAAAAGCCG+AGG - tig0034984:12436-12455 Msa1453990:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - tig0034984:12511-12530 Msa1453990:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - tig0034984:12512-12531 Msa1453990:CDS 55.0%
! ACAGAGGGTGCAAAGCTCAC+TGG + tig0034984:12551-12570 None:intergenic 55.0%
AGTGAGCTTTGCACCCTCTG+TGG - tig0034984:12550-12569 Msa1453990:CDS 55.0%
GAGCAACATCTGCACCACAG+AGG + tig0034984:12567-12586 None:intergenic 55.0%
!! TGGTTTGAGTAGGAGCACCC+TGG + tig0034984:12948-12967 None:intergenic 55.0%
! TGGTGGAGAGGCATGTTCGA+GGG + tig0034984:12997-13016 None:intergenic 55.0%
! ATGGTGGAGAGGCATGTTCG+AGG + tig0034984:12998-13017 None:intergenic 55.0%
AACAATATGGGGGGAGGAGG+TGG - tig0034984:13099-13118 Msa1453990:CDS 55.0%
CGAGTCCCGCCCCAAAACAA+TGG - tig0034984:12667-12686 Msa1453990:CDS 60.0%
AGAGCTGAGCGACTTGCGCA+AGG - tig0034984:12795-12814 Msa1453990:CDS 60.0%
ATGGGGGGAGGAGGTGGATA+TGG - tig0034984:13105-13124 Msa1453990:CDS 60.0%
GGAGGTGGATATGGACCCTC+CGG - tig0034984:13114-13133 Msa1453990:CDS 60.0%
!! TGGTGGGCTGGTCCCGTTGA+TGG - tig0034984:12835-12854 Msa1453990:CDS 65.0%
!! GGTGGGCTGGTCCCGTTGAT+GGG - tig0034984:12836-12855 Msa1453990:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0034984 gene 12433 13146 12433 ID=Msa1453990;Name=Msa1453990
tig0034984 mRNA 12433 13146 12433 ID=Msa1453990-mRNA-1;Parent=Msa1453990;Name=Msa1453990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|-1|0|1|-1|1|1|0|237
tig0034984 exon 12433 13146 12433 ID=Msa1453990-mRNA-1:exon:19434;Parent=Msa1453990-mRNA-1
tig0034984 CDS 12433 13146 12433 ID=Msa1453990-mRNA-1:cds;Parent=Msa1453990-mRNA-1
Gene Sequence

>Msa1453990

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGACCAACGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCGTTTGGCCACCCCAATGTTGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCGCCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCATCGCAGCGCCAATGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAACTACTGGACATCGAGAAGAAACGTGCTGAAGAGCTGAGCGACTTGCGCAAGGCGACCGAAACTCAATTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGACTTATTCAAGAAGGCTTTGGATGAGCTTAAGAAACTTGTTGCTCATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCATTCAGTTTTTTGTTGGAAACGGTTCACCCTCGAACATGCCTCTCCACCATCAACCAAATCCTCCACAAGCTCAGATGTTTCCAGCACAGTTTTTTCAGAACCCTATGTTGCAACCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA
Protein sequence

>Msa1453990

MSSGRKSRGRQKIEMKKMTNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDIEKKRAEELSDLRKATETQFWWAGPVDGMNRAQLDLFKKALDELKKLVAHHADRLVIQGAPTQTIQFFVGNGSPSNMPLHHQPNPPQAQMFPAQFFQNPMLQPHLFGFNNMGGGGGYGPSGFF*