AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1454050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1454050 MtrunA17_Chr6g0486611 99.281 417 3 0 1 417 1 417 0.0 864
Msa1454050 MtrunA17_Chr8g0390211 80.336 417 79 3 1 416 1 415 0.0 695
Msa1454050 MtrunA17_Chr3g0140071 64.532 406 134 4 1 398 1 404 0.0 524
Msa1454050 MtrunA17_Chr4g0071031 63.636 418 143 4 1 411 1 416 0.0 520
Msa1454050 MtrunA17_Chr2g0329981 63.246 419 138 7 1 411 1 411 0.0 520
Msa1454050 MtrunA17_Chr1g0166821 75.625 320 75 2 1 317 2 321 0.0 518
Msa1454050 MtrunA17_Chr1g0183631 76.299 308 73 0 1 308 1 308 1.14e-178 506
Msa1454050 MtrunA17_Chr8g0342821 77.926 299 65 1 1 299 1 298 1.77e-178 506
Msa1454050 MtrunA17_Chr1g0146151 60.526 418 149 5 1 411 1 409 6.53e-177 500
Msa1454050 MtrunA17_Chr1g0187571 72.586 321 85 2 1 318 2 322 2.03e-176 501
Msa1454050 MtrunA17_Chr7g0261501 76.094 297 71 0 1 297 1 297 1.86e-174 496
Msa1454050 MtrunA17_Chr2g0299661 73.579 299 79 0 1 299 1 299 3.02e-171 488
Msa1454050 MtrunA17_Chr1g0167261 69.000 300 91 1 1 298 2 301 2.83e-154 440
Msa1454050 MtrunA17_Chr7g0214531 36.268 284 164 5 9 278 37 317 1.26e-55 193
Msa1454050 MtrunA17_Chr1g0213321 37.818 275 157 6 9 273 119 389 6.13e-54 190
Msa1454050 MtrunA17_Chr1g0146301 36.996 273 161 5 9 273 124 393 3.60e-53 188
Msa1454050 MtrunA17_Chr7g0253211 36.749 283 161 6 9 277 324 602 2.67e-52 188
Msa1454050 MtrunA17_Chr3g0140431 36.264 273 163 5 9 273 38 307 2.84e-52 184
Msa1454050 MtrunA17_Chr8g0340491 34.043 282 164 6 9 273 128 404 2.43e-47 172
Msa1454050 MtrunA17_Chr7g0245031 26.050 238 158 5 3 236 142 365 3.06e-13 71.2
Msa1454050 MtrunA17_Chr5g0428981 25.000 288 151 9 2 249 756 1018 5.69e-13 71.2
Msa1454050 MtrunA17_Chr4g0018201 25.091 275 147 8 2 236 752 1007 8.30e-13 70.5
Msa1454050 MtrunA17_Chr8g0387671 31.132 212 128 8 9 213 66 266 1.13e-12 69.7
Msa1454050 MtrunA17_Chr5g0397101 29.384 211 133 6 9 213 67 267 7.20e-12 67.0
Msa1454050 MtrunA17_Chr1g0205931 26.818 220 134 8 8 213 54 260 7.77e-12 67.4
Msa1454050 MtrunA17_Chr7g0272841 26.364 220 135 7 8 213 67 273 9.07e-12 67.0
Msa1454050 MtrunA17_Chr4g0059951 30.968 155 100 4 5 153 69 222 1.83e-11 65.9
Msa1454050 MtrunA17_Chr4g0075541 29.412 170 103 4 100 269 185 337 2.33e-11 65.1
Msa1454050 MtrunA17_Chr8g0374701 27.803 223 134 9 6 213 122 332 3.80e-11 65.1
Msa1454050 MtrunA17_Chr3g0098951 26.316 228 149 6 9 230 84 298 4.41e-11 64.7
Msa1454050 MtrunA17_Chr3g0127571 28.767 219 134 7 6 213 135 342 4.82e-11 64.7
Msa1454050 MtrunA17_Chr4g0045261 26.728 217 141 5 6 213 134 341 6.54e-11 64.3
Msa1454050 MtrunA17_Chr6g0455651 27.652 264 164 9 15 267 122 369 6.78e-11 63.9
Msa1454050 MtrunA17_Chr4g0033371 28.509 228 134 9 5 219 68 279 7.05e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1454050 AT4G28880.3 70.883 419 107 4 1 410 1 413 0.0 611
Msa1454050 AT4G28880.2 70.883 419 107 4 1 410 1 413 0.0 611
Msa1454050 AT4G28880.1 70.883 419 107 4 1 410 1 413 0.0 611
Msa1454050 AT4G28880.4 70.883 419 107 4 1 410 1 413 0.0 611
Msa1454050 AT4G28860.1 71.801 422 102 7 1 416 1 411 0.0 606
Msa1454050 AT4G28860.2 79.339 363 68 3 1 358 1 361 0.0 602
Msa1454050 AT4G26100.1 72.000 325 90 1 1 325 1 324 1.94e-179 508
Msa1454050 AT5G57015.1 71.875 320 90 0 1 320 1 320 1.63e-177 503
Msa1454050 AT1G72710.1 69.275 345 103 3 1 345 1 342 1.17e-176 502
Msa1454050 AT2G19470.1 68.452 336 96 3 1 327 1 335 2.88e-175 497
Msa1454050 AT1G03930.1 75.084 297 74 0 1 297 1 297 1.68e-174 496
Msa1454050 AT4G28540.1 75.503 298 73 0 1 298 5 302 1.72e-174 497
Msa1454050 AT5G44100.1 69.394 330 90 1 1 319 1 330 6.29e-174 495
Msa1454050 AT5G44100.2 69.394 330 90 1 1 319 1 330 6.29e-174 495
Msa1454050 AT3G23340.1 72.756 312 84 1 1 312 1 311 1.23e-173 493
Msa1454050 AT5G43320.1 56.720 439 164 7 1 418 1 434 4.36e-170 486
Msa1454050 AT4G14340.1 71.474 312 88 1 1 312 7 317 1.31e-169 483
Msa1454050 AT1G04440.1 69.018 326 93 2 1 318 1 326 4.93e-169 483
Msa1454050 AT4G14340.2 71.474 312 88 1 1 312 7 317 6.87e-169 478
Msa1454050 AT5G43320.2 73.737 297 78 0 1 297 1 297 5.30e-168 476
Msa1454050 AT5G43320.3 73.737 297 78 0 1 297 1 297 5.30e-168 476
Msa1454050 AT3G23340.2 69.231 312 81 2 1 312 1 297 9.35e-161 460
Msa1454050 AT4G08800.1 62.585 294 78 2 1 294 1 262 8.64e-135 389
Msa1454050 AT2G25760.2 38.214 280 158 4 9 273 107 386 9.39e-57 198
Msa1454050 AT3G03940.1 37.809 283 158 6 9 277 140 418 2.90e-55 194
Msa1454050 AT2G25760.1 37.857 280 156 5 9 273 107 383 1.43e-54 192
Msa1454050 AT5G18190.2 36.842 285 162 6 9 279 130 410 9.22e-54 190
Msa1454050 AT5G18190.1 36.842 285 162 6 9 279 130 410 9.22e-54 190
Msa1454050 AT3G13670.1 35.211 284 167 5 9 278 137 417 2.72e-53 189
Msa1454050 AT4G23650.1 29.384 211 133 6 9 213 78 278 5.66e-13 71.2
Msa1454050 AT1G54960.1 27.064 218 136 7 8 213 67 273 1.31e-12 70.1
Msa1454050 AT1G54960.2 27.064 218 136 7 8 213 67 273 1.31e-12 70.1
Msa1454050 AT3G23000.1 30.303 231 140 9 3 224 19 237 2.55e-12 68.6
Msa1454050 AT3G06030.1 26.147 218 138 7 8 213 67 273 2.86e-12 68.9
Msa1454050 AT2G46700.1 26.267 217 142 4 6 213 140 347 4.87e-12 68.2
Msa1454050 AT2G41860.1 27.907 215 139 6 5 213 50 254 7.71e-12 67.4
Msa1454050 AT3G08720.1 24.370 238 160 6 4 236 134 356 7.88e-12 67.4
Msa1454050 AT3G08720.3 24.370 238 160 6 4 236 134 356 7.88e-12 67.4
Msa1454050 AT3G08720.4 24.370 238 160 6 4 236 134 356 7.88e-12 67.4
Msa1454050 AT3G08720.2 24.370 238 160 6 4 236 134 356 7.88e-12 67.4
Msa1454050 AT3G50530.1 27.064 218 139 7 6 213 145 352 1.02e-11 67.4
Msa1454050 AT1G09000.1 27.189 217 135 7 9 213 69 274 1.17e-11 67.0
Msa1454050 AT2G41860.2 27.907 215 139 6 5 213 50 254 1.26e-11 67.0
Msa1454050 AT1G09000.2 27.189 217 135 7 9 213 69 274 1.44e-11 67.0
Msa1454050 AT3G17850.1 24.627 268 158 8 2 236 875 1131 1.56e-11 67.0
Msa1454050 AT1G74740.1 27.442 215 140 6 5 213 55 259 1.65e-11 66.6
Msa1454050 AT3G08730.1 23.790 248 169 6 4 246 128 360 2.03e-11 66.2
Msa1454050 AT3G08730.2 23.790 248 169 6 4 246 128 360 2.03e-11 66.2
Msa1454050 AT3G20410.2 27.511 229 145 7 9 230 91 305 2.10e-11 66.2
Msa1454050 AT3G20410.1 27.511 229 145 7 9 230 91 305 2.10e-11 66.2
Msa1454050 AT2G17890.1 25.116 215 145 5 8 215 107 312 3.25e-11 65.5
Msa1454050 AT4G24400.1 27.686 242 126 9 8 227 8 222 6.10e-11 64.3
Msa1454050 AT3G49370.1 28.571 217 133 7 8 213 141 346 6.13e-11 64.7
Msa1454050 AT1G18890.1 28.182 220 132 7 5 213 59 263 6.48e-11 64.7
Msa1454050 AT4G24400.2 27.686 242 126 9 8 227 8 222 6.67e-11 64.3
Msa1454050 AT1G50700.3 27.273 231 149 7 9 233 73 290 8.40e-11 64.3
Msa1454050 AT1G50700.1 27.273 231 149 7 9 233 73 290 9.07e-11 64.3

Find 152 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGTATATGTAATTGATTT+TGG 0.199306 tig0035015:+6530 Msa1454050:intron
ATTCTTGAGGCGCCTATTTC+GGG 0.201735 tig0035015:+7366 Msa1454050:CDS
GATTCTTGAGGCGCCTATTT+CGG 0.235818 tig0035015:+7365 Msa1454050:CDS
GCAAGACTATTGCATTTATA+TGG 0.237509 tig0035015:+9930 Msa1454050:three_prime_UTR
TTTGATCAGCGACCTGATTA+TGG 0.244829 tig0035015:+7343 Msa1454050:CDS
GAGCAAATAACTCCCGAAAT+AGG 0.299908 tig0035015:-7378 None:intergenic
GCTTCTTTGTCGCAGCCTTT+AGG 0.310608 tig0035015:-7128 None:intergenic
AGAATGCACATACTCTATTC+TGG 0.314521 tig0035015:-6316 None:intergenic
ACAAAGCCGCCGGGATGATT+TGG 0.324631 tig0035015:+6943 Msa1454050:CDS
AATTTGATTATGTATTTGAT+TGG 0.332820 tig0035015:+7892 Msa1454050:CDS
TTGGGCTTGCAAAACGATAT+CGG 0.336257 tig0035015:+6549 Msa1454050:CDS
TACCGCCTGATGATTTAAAC+TGG 0.353819 tig0035015:-8266 None:intergenic
TCAAAAGAGTGTGAAGTAGA+AGG 0.355419 tig0035015:-8504 None:intergenic
TCAGACAATGCCGCTTCTTC+CGG 0.363687 tig0035015:+8234 Msa1454050:CDS
GGAAGACAATGTGCTTGTTA+TGG 0.374985 tig0035015:+6023 Msa1454050:CDS
AAGTTCCAGTTTAAATCATC+AGG 0.379006 tig0035015:+8261 Msa1454050:CDS
GCAAGCTGCAATACTCATCT+TGG 0.385425 tig0035015:+6829 Msa1454050:CDS
TTGAAAAGGAGAAAGAATTC+AGG 0.399931 tig0035015:+10127 Msa1454050:three_prime_UTR
TGCTCCCTTGCCCATGCCTA+TGG 0.400254 tig0035015:-8578 None:intergenic
GCCCGATTGTTGCTCGCTAC+AGG 0.409927 tig0035015:-8073 None:intergenic
TTCCTGTAGCGAGCAACAAT+CGG 0.414919 tig0035015:+8071 Msa1454050:CDS
TTGGCTTCTGAGAATCATCT+TGG 0.415195 tig0035015:+8294 Msa1454050:CDS
GGGCAGATGCTTACCTCAAT+AGG 0.418445 tig0035015:-7189 None:intergenic
CGCCTCAAGAATCCATAATC+AGG 0.420387 tig0035015:-7355 None:intergenic
TGTGCTTGTTATGGATTTGT+TGG 0.425675 tig0035015:+6032 Msa1454050:CDS
TAGAAAGTTCAAAACCTGTA+TGG 0.426001 tig0035015:-6596 None:intergenic
ATCGGTGATAAATTCAAGTT+AGG 0.432066 tig0035015:+4508 Msa1454050:CDS
CCGTCAATGCGGATAATACT+AGG 0.432268 tig0035015:+10349 Msa1454050:three_prime_UTR
CGGGATGATTTGGAGTCTCT+TGG 0.432361 tig0035015:+6953 Msa1454050:CDS
ATTTCGGTCCTCACGGGTTG+AGG 0.433376 tig0035015:-10245 None:intergenic
CCTCAAAACTGTCTTGATGT+TGG 0.434362 tig0035015:+6101 Msa1454050:CDS
TGGGCTTGCAAAACGATATC+GGG 0.435539 tig0035015:+6550 Msa1454050:CDS
TGGGATGTGGCGATTGGTTG+TGG 0.437079 tig0035015:-6576 None:intergenic
GGGCAAGGGAGCAGTAAAAT+TGG 0.439859 tig0035015:+8588 Msa1454050:CDS
GAGGATCATATGTATGAAGA+AGG 0.443268 tig0035015:-10226 None:intergenic
GTGCTTGTTATGGATTTGTT+GGG 0.443410 tig0035015:+6033 Msa1454050:CDS
CGAGTAATATCTCAGATTCA+TGG 0.446754 tig0035015:+4477 Msa1454050:exon
CACCACTCCATCTTATGCTT+GGG 0.449410 tig0035015:-5993 None:intergenic
TTGAAGAATATTATAGAGCT+TGG 0.455654 tig0035015:-5433 None:intergenic
ATAGAGTATGTGCATTCTAA+AGG 0.458276 tig0035015:+6321 Msa1454050:CDS
CTTGATGTTGGCTGATCAAA+TGG 0.461622 tig0035015:+6113 Msa1454050:CDS
ACATTCATCCGACTGCTTGA+AGG 0.461732 tig0035015:-8612 None:intergenic
AGTAGCCACCGCAATGGAAA+AGG 0.463846 tig0035015:-4401 None:intergenic
TACTTACGGATATGTGAGGC+TGG 0.464438 tig0035015:-7953 None:intergenic
TCATGAAAGATGGAAATATG+AGG 0.469388 tig0035015:+10177 Msa1454050:three_prime_UTR
GAATTCAACACGCGGACGGA+TGG 0.475714 tig0035015:-4361 None:intergenic
GGTTCAAGCACCAACCTTGT+TGG 0.476423 tig0035015:-8117 None:intergenic
CCTCCATAGGGATATAAAAC+CGG 0.477649 tig0035015:+6347 Msa1454050:CDS
ATTCTAAAGGGTTCCTCCAT+AGG 0.479961 tig0035015:+6334 Msa1454050:CDS
TGCAATACTCATCTTGGGAT+TGG 0.480350 tig0035015:+6835 Msa1454050:CDS
TCTGTTGTGTTGCAGGAGAC+TGG 0.481529 tig0035015:+5378 Msa1454050:intron
CCTAGTATTATCCGCATTGA+CGG 0.483380 tig0035015:-10349 None:intergenic
CAAGCTGCAATACTCATCTT+GGG 0.484146 tig0035015:+6830 Msa1454050:CDS
AAGCTCTATAATATTCTTCA+AGG 0.485336 tig0035015:+5435 Msa1454050:CDS
CTAGTATTATCCGCATTGAC+GGG 0.487663 tig0035015:-10348 None:intergenic
TAAGATGGAGTGGTGTAGAC+GGG 0.495163 tig0035015:+6001 Msa1454050:CDS
AGTGGACGCGGAAGGCTTCA+AGG 0.495368 tig0035015:-8544 None:intergenic
ACACCACTCCATCTTATGCT+TGG 0.495604 tig0035015:-5994 None:intergenic
TTGTTGGTTATCAATATCCA+TGG 0.497091 tig0035015:-8101 None:intergenic
AACTAAAATCTTAATGTCAC+AGG 0.497589 tig0035015:-10323 None:intergenic
AGGTCAAAGAATGGCAGTAA+TGG 0.499416 tig0035015:-7321 None:intergenic
TCCTGTAGCGAGCAACAATC+GGG 0.501671 tig0035015:+8072 Msa1454050:CDS
TTGTTGCTCGCTACAGGAAC+CGG 0.502364 tig0035015:-8067 None:intergenic
GCTTGCATAACGCGCAGTCC+CGG 0.502927 tig0035015:-6812 None:intergenic
ATGTAGAGTAAATGACATCT+AGG 0.503049 tig0035015:+10020 Msa1454050:three_prime_UTR
TAGAGTATGTGCATTCTAAA+GGG 0.503360 tig0035015:+6322 Msa1454050:CDS
GGGAGGGAGTATAAGTAAGG+GGG 0.503526 tig0035015:+4290 None:intergenic
CCTTCCCTGGCAAAACCTAA+AGG 0.504434 tig0035015:+7113 Msa1454050:CDS
TGCGGATAATACTAGGTCAC+CGG 0.506596 tig0035015:+10356 Msa1454050:three_prime_UTR
AATGTCCACATCCATTGAAA+AGG 0.507973 tig0035015:+10113 Msa1454050:three_prime_UTR
TAATTGTGTTTAGCCTTCCC+TGG 0.508361 tig0035015:+7100 Msa1454050:intron
CTAAGTAATATCTCTTCATA+CGG 0.509034 tig0035015:+10055 Msa1454050:three_prime_UTR
ACTTGGTCGGAAGGCAAACC+TGG 0.509382 tig0035015:+6386 Msa1454050:CDS
GAAAGTATCAACTCCTATTG+AGG 0.519371 tig0035015:+7176 Msa1454050:CDS
AATTCTTATTTCGGTCCTCA+CGG 0.521349 tig0035015:-10252 None:intergenic
TTAGGACGCAAGATCGGAAG+TGG 0.521534 tig0035015:+4526 Msa1454050:CDS
TTTCATTCTTTAACCCATGT+AGG 0.521760 tig0035015:-9996 None:intergenic
TTCTAAAGGGTTCCTCCATA+GGG 0.522924 tig0035015:+6335 Msa1454050:CDS
CATGAAAGATGGAAATATGA+GGG 0.523975 tig0035015:+10178 Msa1454050:three_prime_UTR
AAGATCGGAAGTGGATCCTT+CGG 0.526716 tig0035015:+4535 Msa1454050:CDS
AGAAAGTTCAAAACCTGTAT+GGG 0.527700 tig0035015:-6595 None:intergenic
CGGGAGTTATTTGCTCGAGA+AGG 0.530876 tig0035015:+7385 Msa1454050:CDS
GTGGTATCCCAAGCATAAGA+TGG 0.531050 tig0035015:+5986 Msa1454050:CDS
TCAACACGCGGACGGATGGA+CGG 0.532198 tig0035015:-4357 None:intergenic
ATGGTGGAGATCATGAAAGA+TGG 0.532717 tig0035015:+10167 Msa1454050:three_prime_UTR
CAAAAGAGTGTGAAGTAGAA+GGG 0.533732 tig0035015:-8503 None:intergenic
CCAATCGCCACATCCCATAC+AGG 0.535975 tig0035015:+6582 Msa1454050:CDS
ATTCTTATTTCGGTCCTCAC+GGG 0.537660 tig0035015:-10251 None:intergenic
GATAACTTTCTCATGGGACT+TGG 0.540360 tig0035015:+6369 Msa1454050:CDS
AAGTACGAAGCAAACTCTAC+AGG 0.544026 tig0035015:-7298 None:intergenic
ATATCTCTTCATACGGGCGA+TGG 0.546786 tig0035015:+10062 Msa1454050:three_prime_UTR
AGGGAGGGAGTATAAGTAAG+GGG 0.546891 tig0035015:+4289 None:intergenic
CCTATGGTTTGCAGCTTCAG+TGG 0.548768 tig0035015:-8562 None:intergenic
ATGGATCCTCTCGTGTCATG+AGG 0.549642 tig0035015:+10081 Msa1454050:three_prime_UTR
TCCTTCGGTGAAATCTATCT+CGG 0.549980 tig0035015:+4550 Msa1454050:CDS
TTCAAGTTAGGACGCAAGAT+CGG 0.551617 tig0035015:+4520 Msa1454050:CDS
TTCAAAACCTGTATGGGATG+TGG 0.553955 tig0035015:-6589 None:intergenic
CAACAATCGGGCAATGCCCA+TGG 0.556507 tig0035015:+8084 Msa1454050:CDS
TTTGTTGGGCCCTAGTCTTG+AGG 0.561115 tig0035015:+6047 Msa1454050:CDS
AAACCGGATAACTTTCTCAT+GGG 0.561522 tig0035015:+6363 Msa1454050:CDS
AGGATCATATGTATGAAGAA+GGG 0.561771 tig0035015:-10225 None:intergenic
AAATGAATTCAACACGCGGA+CGG 0.563130 tig0035015:-4365 None:intergenic
GAAGAGAGTAGCCACCGCAA+TGG 0.564031 tig0035015:-4407 None:intergenic
GCAAACCATAGGCATGGGCA+AGG 0.564524 tig0035015:+8573 Msa1454050:CDS
TCTCATGGGACTTGGTCGGA+AGG 0.565028 tig0035015:+6377 Msa1454050:CDS
GAAGCTGCAAACCATAGGCA+TGG 0.565598 tig0035015:+8567 Msa1454050:CDS
AGATTCATGGATCGAATCAT+CGG 0.566316 tig0035015:+4490 Msa1454050:exon
GCAGCTTCAGTGGACGCGGA+AGG 0.566995 tig0035015:-8552 None:intergenic
ATAAGATGGAGTGGTGTAGA+CGG 0.572946 tig0035015:+6000 Msa1454050:CDS
ATAATCAGGTCGCTGATCAA+AGG 0.572957 tig0035015:-7341 None:intergenic
AAAACCGGATAACTTTCTCA+TGG 0.575825 tig0035015:+6362 Msa1454050:CDS
CCACTGAAGCTGCAAACCAT+AGG 0.576164 tig0035015:+8562 Msa1454050:CDS
AGTCCCATGAGAAAGTTATC+CGG 0.577140 tig0035015:-6366 None:intergenic
GTTTGCAGCTTCAGTGGACG+CGG 0.581258 tig0035015:-8556 None:intergenic
GGATCATATGTATGAAGAAG+GGG 0.581680 tig0035015:-10224 None:intergenic
TTGGCTTCATAAAGCAATTG+TGG 0.582787 tig0035015:-5414 None:intergenic
GCTGATCAAAGGTCAAAGAA+TGG 0.590024 tig0035015:-7330 None:intergenic
TGGATCCTCTCGTGTCATGA+GGG 0.590161 tig0035015:+10082 Msa1454050:three_prime_UTR
ACTTTCTCATGGGACTTGGT+CGG 0.592057 tig0035015:+6373 Msa1454050:CDS
ACGAAGCAAACTCTACAGGA+TGG 0.592572 tig0035015:-7294 None:intergenic
TAAGTAATATCTCTTCATAC+GGG 0.594223 tig0035015:+10056 Msa1454050:three_prime_UTR
AAGCTGCAAACCATAGGCAT+GGG 0.597512 tig0035015:+8568 Msa1454050:CDS
ATTTGTAGAACAAAGCCGCC+GGG 0.602617 tig0035015:+6934 Msa1454050:intron
CCTGTATGGGATGTGGCGAT+TGG 0.602796 tig0035015:-6582 None:intergenic
TGTTGGTTATCAATATCCAT+GGG 0.604040 tig0035015:-8100 None:intergenic
GAACTTAACACCGGAAGAAG+CGG 0.606399 tig0035015:-8244 None:intergenic
CGAAGCAAACTCTACAGGAT+GGG 0.611082 tig0035015:-7293 None:intergenic
GCGGATAATACTAGGTCACC+GGG 0.617014 tig0035015:+10357 Msa1454050:three_prime_UTR
ATCCCAAGCATAAGATGGAG+TGG 0.620505 tig0035015:+5991 Msa1454050:CDS
ACCGAGATAGATTTCACCGA+AGG 0.620573 tig0035015:-4551 None:intergenic
AAATTGGTCCTTCAAGCAGT+CGG 0.622441 tig0035015:+8604 Msa1454050:CDS
CAAGAGACTCCAAATCATCC+CGG 0.622494 tig0035015:-6952 None:intergenic
TTTAAACTGGAACTTAACAC+CGG 0.623764 tig0035015:-8253 None:intergenic
TTCCAGTTTAAATCATCAGG+CGG 0.630569 tig0035015:+8264 Msa1454050:CDS
ACTTACGGATATGTGAGGCT+GGG 0.634330 tig0035015:-7952 None:intergenic
CTCTATAATATTCTTCAAGG+AGG 0.636528 tig0035015:+5438 Msa1454050:CDS
TATTTGTAGAACAAAGCCGC+CGG 0.642128 tig0035015:+6933 Msa1454050:intron
CAAACCATAGGCATGGGCAA+GGG 0.646006 tig0035015:+8574 Msa1454050:CDS
CTTGACAGCAACGATCTCGA+AGG 0.646641 tig0035015:-4700 None:intergenic
ACAAGAACTAGCACAAGACC+CGG 0.647326 tig0035015:-10375 None:intergenic
TAGTATTATCCGCATTGACG+GGG 0.650990 tig0035015:-10347 None:intergenic
AATATACTTACGGATATGTG+AGG 0.660737 tig0035015:-7957 None:intergenic
AAGATGGAGTGGTGTAGACG+GGG 0.662328 tig0035015:+6002 Msa1454050:CDS
GACCTGATTATGGATTCTTG+AGG 0.667363 tig0035015:+7353 Msa1454050:CDS
TAGAGTAAATGACATCTAGG+TGG 0.693050 tig0035015:+10023 Msa1454050:three_prime_UTR
GAATGCCATACCTTCCTCTG+AGG 0.704652 tig0035015:-6994 None:intergenic
ATAGACCCTCATGACACGAG+AGG 0.706477 tig0035015:-10087 None:intergenic
TTATACAGGGGATGTCTCAG+CGG 0.711079 tig0035015:+8200 Msa1454050:intron
ATGGATATTGATAACCAACA+AGG 0.718739 tig0035015:+8103 Msa1454050:CDS
CATATGATCCTCAACCCGTG+AGG 0.733034 tig0035015:+10237 Msa1454050:three_prime_UTR
GAGACTCCAAATCATCCCGG+CGG 0.750112 tig0035015:-6949 None:intergenic
AATGAAATGAATTCAACACG+CGG 0.778440 tig0035015:-4369 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTAATTT+GGG + tig0035015:6284-6303 Msa1454050:intron 0.0%
!! AAATATGAAAATTAAAGAAT+TGG - tig0035015:4740-4759 None:intergenic 10.0%
!!! ATTCATTAAGTATTAATTTT+GGG - tig0035015:6763-6782 None:intergenic 10.0%
!!! AATTCATTAAGTATTAATTT+TGG - tig0035015:6764-6783 None:intergenic 10.0%
!!! AAAAAATTAATATTTTCAGA+TGG - tig0035015:8037-8056 None:intergenic 10.0%
!! ATAAACAACATATTAAAATT+TGG - tig0035015:8452-8471 None:intergenic 10.0%
!!! TTATTATTTTTGTAGATTTT+TGG + tig0035015:8468-8487 Msa1454050:intron 10.0%
!!! AAAAAATTTGTTTAGCTTAT+TGG + tig0035015:4909-4928 Msa1454050:intron 15.0%
!!! ATTTTTTATGAATGAAGTTT+AGG - tig0035015:7688-7707 None:intergenic 15.0%
!! AATTTGATTATGTATTTGAT+TGG + tig0035015:7892-7911 Msa1454050:CDS 15.0%
!!! GGTTTAAATTTTGTTATTAA+AGG + tig0035015:9554-9573 Msa1454050:intron 15.0%
!!! TCTTTTTTTTCTAATCTATA+TGG + tig0035015:9892-9911 Msa1454050:CDS 15.0%
!!! ATCAAAAACAATTCTTATTT+CGG - tig0035015:10264-10283 None:intergenic 15.0%
!!! AAATTTGTTGAAAGTATGTT+TGG - tig0035015:5015-5034 None:intergenic 20.0%
!! ATGAGTCAAACAATAAATTT+CGG - tig0035015:5171-5190 None:intergenic 20.0%
!! ACAACAATGAAAATAATGAA+AGG - tig0035015:5480-5499 None:intergenic 20.0%
!!! TTTCATTATTTTCATTGTTG+TGG + tig0035015:5479-5498 Msa1454050:intron 20.0%
!!! TTCATTATTTTCATTGTTGT+GGG + tig0035015:5480-5499 Msa1454050:intron 20.0%
!!! TCCCTAAAAATTGTATTTTT+AGG + tig0035015:5585-5604 Msa1454050:intron 20.0%
!!! CCCTAAAAATACAATTTTTA+GGG - tig0035015:5589-5608 None:intergenic 20.0%
!!! CCCTAAAAATTGTATTTTTA+GGG + tig0035015:5586-5605 Msa1454050:intron 20.0%
!!! TCCCTAAAAATACAATTTTT+AGG - tig0035015:5590-5609 None:intergenic 20.0%
!!! TTTTAGGGATATTTTAGTTA+AGG + tig0035015:5601-5620 Msa1454050:intron 20.0%
!!! GATTTTTGTTTAATTAATGC+AGG + tig0035015:5964-5983 Msa1454050:intron 20.0%
!!! AGGTATATGTAATTGATTTT+GGG + tig0035015:6531-6550 Msa1454050:intron 20.0%
!! TAAAGTGAATGAATTAACAA+CGG - tig0035015:6632-6651 None:intergenic 20.0%
!!! TTAATTTTGGGTATTTCTAA+GGG - tig0035015:6751-6770 None:intergenic 20.0%
!!! ATTAATTTTGGGTATTTCTA+AGG - tig0035015:6752-6771 None:intergenic 20.0%
!!! TTAATGAATTTTACAACACA+GGG + tig0035015:6774-6793 Msa1454050:intron 20.0%
!!! AGTATATGTTCTGATTTTTA+CGG + tig0035015:7070-7089 Msa1454050:intron 20.0%
!! ATAACAAAGAAATAAGCATT+TGG - tig0035015:7226-7245 None:intergenic 20.0%
!!! ATTAATATTTTCAGATGGAT+TGG - tig0035015:8032-8051 None:intergenic 20.0%
!! TTATGCAGAAGAAAAAAATA+TGG - tig0035015:8141-8160 None:intergenic 20.0%
!!! TTGTAGATAATTTTCAAGTA+TGG + tig0035015:9004-9023 Msa1454050:intron 20.0%
!!! TTGATAATATTACAAATTGC+AGG + tig0035015:9153-9172 Msa1454050:intron 20.0%
!! CCTAAAGTTTAAATATTAAG+AGG - tig0035015:9536-9555 None:intergenic 20.0%
!! CCTCTTAATATTTAAACTTT+AGG + tig0035015:9533-9552 Msa1454050:intron 20.0%
!!! TATTAAAGGAACATTTTCAA+AGG + tig0035015:9568-9587 Msa1454050:intron 20.0%
!! AATGACAATACAAATTAATC+TGG - tig0035015:9731-9750 None:intergenic 20.0%
!!! TTAATTTGTATTGTCATTCT+TGG + tig0035015:9733-9752 Msa1454050:intron 20.0%
!!! TAATTTGTATTGTCATTCTT+GGG + tig0035015:9734-9753 Msa1454050:intron 20.0%
!!! GGAAAAAAATTGAGTTTTAA+TGG + tig0035015:10148-10167 Msa1454050:three_prime_UTR 20.0%
!!! AAAAAATTGAGTTTTAATGG+TGG + tig0035015:10151-10170 Msa1454050:three_prime_UTR 20.0%
!!! TTTTTGATCATAATGTTTGT+TGG + tig0035015:10276-10295 Msa1454050:three_prime_UTR 20.0%
! ATGAGAATTTGATTGATTGA+AGG - tig0035015:4582-4601 None:intergenic 25.0%
! TTAGTGTATGTTTGATATCA+CGG + tig0035015:4803-4822 Msa1454050:intron 25.0%
!! TAAGACATTGAAAGTATGTT+TGG - tig0035015:4888-4907 None:intergenic 25.0%
! TTGAAGAATATTATAGAGCT+TGG - tig0035015:5436-5455 None:intergenic 25.0%
! AAGCTCTATAATATTCTTCA+AGG + tig0035015:5435-5454 Msa1454050:CDS 25.0%
!!! TCCTCTAAAATGTCAAATAT+CGG - tig0035015:5637-5656 None:intergenic 25.0%
! TCATTTCTCTTGGATTAAAT+AGG + tig0035015:5672-5691 Msa1454050:intron 25.0%
!! TTGCTATTGTTATTGTTGTT+GGG + tig0035015:5923-5942 Msa1454050:intron 25.0%
! TGGGATTTAATTGAAAATGT+TGG + tig0035015:5942-5961 Msa1454050:intron 25.0%
!!! TTTTGTTTAATTAATGCAGG+TGG + tig0035015:5967-5986 Msa1454050:intron 25.0%
!!! CAGGTATATGTAATTGATTT+TGG + tig0035015:6530-6549 Msa1454050:intron 25.0%
!! CTTAATGAATTTTACAACAC+AGG + tig0035015:6773-6792 Msa1454050:intron 25.0%
!! AGCATTTGGAATAGTTATAT+GGG - tig0035015:7212-7231 None:intergenic 25.0%
!! AAGCATTTGGAATAGTTATA+TGG - tig0035015:7213-7232 None:intergenic 25.0%
!! TTTTATGAATGAAGTTTAGG+TGG - tig0035015:7685-7704 None:intergenic 25.0%
! CACACACATAAATATACTTA+CGG - tig0035015:7970-7989 None:intergenic 25.0%
!!! TAATTTTTTCTTATTGCAGC+CGG + tig0035015:8048-8067 Msa1454050:intron 25.0%
!! TTCACAAGTTTGAAACATAA+AGG - tig0035015:8410-8429 None:intergenic 25.0%
! TGCTAAATAAATGCTGAATA+TGG + tig0035015:8650-8669 Msa1454050:intron 25.0%
! TGAGTACTATTGTCTATATA+TGG + tig0035015:8707-8726 Msa1454050:intron 25.0%
! TGTAAAATTAATGTGTGATG+TGG + tig0035015:9058-9077 Msa1454050:intron 25.0%
! TTGAGAAGAAACCATTATTT+CGG - tig0035015:9425-9444 None:intergenic 25.0%
!!! TCAAACATTTCTTGATTTGT+AGG + tig0035015:9686-9705 Msa1454050:intron 25.0%
!!! TTTACATTTGTTTCTTTTGC+AGG + tig0035015:9867-9886 Msa1454050:intron 25.0%
!! TTTTCTAATCTATATGGCAA+TGG + tig0035015:9898-9917 Msa1454050:CDS 25.0%
! CCAAAAAGAAAAAATGTAGA+TGG - tig0035015:9959-9978 None:intergenic 25.0%
!!! CCATCTACATTTTTTCTTTT+TGG + tig0035015:9956-9975 Msa1454050:three_prime_UTR 25.0%
!!! TCTACATTTTTTCTTTTTGG+AGG + tig0035015:9959-9978 Msa1454050:three_prime_UTR 25.0%
!!! ATTTCCTTTTTTAACCTACA+TGG + tig0035015:9982-10001 Msa1454050:three_prime_UTR 25.0%
!!! TTTCCTTTTTTAACCTACAT+GGG + tig0035015:9983-10002 Msa1454050:three_prime_UTR 25.0%
! CTAAGTAATATCTCTTCATA+CGG + tig0035015:10055-10074 Msa1454050:three_prime_UTR 25.0%
! TAAGTAATATCTCTTCATAC+GGG + tig0035015:10056-10075 Msa1454050:three_prime_UTR 25.0%
! AACTAAAATCTTAATGTCAC+AGG - tig0035015:10326-10345 None:intergenic 25.0%
AATGAAATGAATTCAACACG+CGG - tig0035015:4372-4391 None:intergenic 30.0%
! ATAGTTTTCCTTTTCCATTG+CGG + tig0035015:4393-4412 Msa1454050:five_prime_UTR 30.0%
! ATCGGTGATAAATTCAAGTT+AGG + tig0035015:4508-4527 Msa1454050:CDS 30.0%
! TATTGGCATGTTTTGTATCA+TGG + tig0035015:4926-4945 Msa1454050:intron 30.0%
AAGTATGTTTGGTATCACTA+TGG - tig0035015:5004-5023 None:intergenic 30.0%
! TTTTGACGTGTTTATTGTTC+TGG + tig0035015:5100-5119 Msa1454050:intron 30.0%
! TGTGATACCAAACATACTTT+TGG + tig0035015:5325-5344 Msa1454050:intron 30.0%
! GCTAAAACCAAAAGTATGTT+TGG - tig0035015:5335-5354 None:intergenic 30.0%
CTCTATAATATTCTTCAAGG+AGG + tig0035015:5438-5457 Msa1454050:CDS 30.0%
! TCCGATATTTGACATTTTAG+AGG + tig0035015:5633-5652 Msa1454050:intron 30.0%
! TCGACATTTTTCATTTCTCT+TGG + tig0035015:5662-5681 Msa1454050:intron 30.0%
AATGTTGTCAATTGCAGATT+GGG - tig0035015:5852-5871 None:intergenic 30.0%
!! CTTGCTATTGTTATTGTTGT+TGG + tig0035015:5922-5941 Msa1454050:intron 30.0%
ACTGACTAAAAAACATCACA+AGG - tig0035015:6173-6192 None:intergenic 30.0%
ATAGAGTATGTGCATTCTAA+AGG + tig0035015:6321-6340 Msa1454050:CDS 30.0%
TAGAGTATGTGCATTCTAAA+GGG + tig0035015:6322-6341 Msa1454050:CDS 30.0%
ATCAGTCAATTCTAAATGCA+GGG - tig0035015:6440-6459 None:intergenic 30.0%
AGAAAGTTCAAAACCTGTAT+GGG - tig0035015:6598-6617 None:intergenic 30.0%
TAGAAAGTTCAAAACCTGTA+TGG - tig0035015:6599-6618 None:intergenic 30.0%
!! GAATTAACAACGGATTACAA+TGG - tig0035015:6622-6641 None:intergenic 30.0%
TTCAACATTAACATCAAACC+CGG - tig0035015:6675-6694 None:intergenic 30.0%
! TGCAATTTGTTTGATGTGAA+GGG - tig0035015:6884-6903 None:intergenic 30.0%
! TTGCAATTTGTTTGATGTGA+AGG - tig0035015:6885-6904 None:intergenic 30.0%
GGCATTCTTATCTAGTTATT+TGG + tig0035015:7010-7029 Msa1454050:intron 30.0%
ATACTTATGTTGCTCTCAAT+AGG - tig0035015:7055-7074 None:intergenic 30.0%
!!! ATTTGTCTGTTGTTTTGTGT+AGG + tig0035015:7258-7277 Msa1454050:intron 30.0%
! AATATGAATTTTGCGTATGG+AGG - tig0035015:7781-7800 None:intergenic 30.0%
! CAGAATATGAATTTTGCGTA+TGG - tig0035015:7784-7803 None:intergenic 30.0%
GCAAAATTCATATTCTGTTG+TGG + tig0035015:7787-7806 Msa1454050:intron 30.0%
AATATACTTACGGATATGTG+AGG - tig0035015:7960-7979 None:intergenic 30.0%
! TGTTGGTTATCAATATCCAT+GGG - tig0035015:8103-8122 None:intergenic 30.0%
! TTGTTGGTTATCAATATCCA+TGG - tig0035015:8104-8123 None:intergenic 30.0%
! ATGGATATTGATAACCAACA+AGG + tig0035015:8103-8122 Msa1454050:CDS 30.0%
! ATATTGATAACCAACAAGGT+TGG + tig0035015:8107-8126 Msa1454050:intron 30.0%
TTTAAACTGGAACTTAACAC+CGG - tig0035015:8256-8275 None:intergenic 30.0%
AAGTTCCAGTTTAAATCATC+AGG + tig0035015:8261-8280 Msa1454050:CDS 30.0%
TTCAAACTTGTGAAATAGAC+TGG + tig0035015:8416-8435 Msa1454050:intron 30.0%
! TGCTGAATATGGTAATTTTC+TGG + tig0035015:8661-8680 Msa1454050:intron 30.0%
! ATTTCTTAGCTCATCTTTTG+AGG + tig0035015:8894-8913 Msa1454050:intron 30.0%
CTATGTCACCACTTATTATA+CGG - tig0035015:9118-9137 None:intergenic 30.0%
TAATAAGTGGTGACATAGTT+TGG + tig0035015:9120-9139 Msa1454050:intron 30.0%
TGAATCATCAATCCATGAAA+TGG + tig0035015:9320-9339 Msa1454050:intron 30.0%
! TGAATCAGATGCAAAAGTTT+TGG + tig0035015:9388-9407 Msa1454050:intron 30.0%
TGAGAAGAAACCATTATTTC+GGG - tig0035015:9424-9443 None:intergenic 30.0%
! TCAAACATCAAAGGTAGTTT+TGG + tig0035015:9441-9460 Msa1454050:intron 30.0%
!!! GTTTTATTTCAATGTGACCA+AGG + tig0035015:9774-9793 Msa1454050:intron 30.0%
!! ATTTGCAATTAGCTTTACAC+AGG - tig0035015:9829-9848 None:intergenic 30.0%
GCAAGACTATTGCATTTATA+TGG + tig0035015:9930-9949 Msa1454050:three_prime_UTR 30.0%
TAACCCATGTAGGTTAAAAA+AGG - tig0035015:9989-10008 None:intergenic 30.0%
TTTCATTCTTTAACCCATGT+AGG - tig0035015:9999-10018 None:intergenic 30.0%
ATGTAGAGTAAATGACATCT+AGG + tig0035015:10020-10039 Msa1454050:three_prime_UTR 30.0%
! GAATTCTTTCTCCTTTTCAA+TGG - tig0035015:10127-10146 None:intergenic 30.0%
TTGAAAAGGAGAAAGAATTC+AGG + tig0035015:10127-10146 Msa1454050:three_prime_UTR 30.0%
TCATGAAAGATGGAAATATG+AGG + tig0035015:10177-10196 Msa1454050:three_prime_UTR 30.0%
CATGAAAGATGGAAATATGA+GGG + tig0035015:10178-10197 Msa1454050:three_prime_UTR 30.0%
AGGATCATATGTATGAAGAA+GGG - tig0035015:10228-10247 None:intergenic 30.0%
CGAGTAATATCTCAGATTCA+TGG + tig0035015:4477-4496 Msa1454050:exon 35.0%
AGATTCATGGATCGAATCAT+CGG + tig0035015:4490-4509 Msa1454050:exon 35.0%
AAAGTATGTTTGGTATCACC+GGG - tig0035015:4878-4897 None:intergenic 35.0%
! GAAAGTATGTTTGGTATCAC+CGG - tig0035015:4879-4898 None:intergenic 35.0%
TCATGGTTCACTATGATTCT+TGG - tig0035015:4960-4979 None:intergenic 35.0%
!! TCGAACTACATTGATTTGCA+TGG + tig0035015:5277-5296 Msa1454050:intron 35.0%
! TTGATTTTCTGTTGTGTTGC+AGG + tig0035015:5371-5390 Msa1454050:intron 35.0%
TTGGCTTCATAAAGCAATTG+TGG - tig0035015:5417-5436 None:intergenic 35.0%
AGGTGTTCATGTATTTACTC+AGG + tig0035015:5692-5711 Msa1454050:intron 35.0%
CAATGTTGTCAATTGCAGAT+TGG - tig0035015:5853-5872 None:intergenic 35.0%
!! TGTGCTTGTTATGGATTTGT+TGG + tig0035015:6032-6051 Msa1454050:CDS 35.0%
!! GTGCTTGTTATGGATTTGTT+GGG + tig0035015:6033-6052 Msa1454050:CDS 35.0%
CAAAAAGATCCTCAAGACTA+GGG - tig0035015:6059-6078 None:intergenic 35.0%
ACAAAAAGATCCTCAAGACT+AGG - tig0035015:6060-6079 None:intergenic 35.0%
!! GAGGATCTTTTTGTTTACTG+TGG + tig0035015:6066-6085 Msa1454050:CDS 35.0%
!! CAACATCAAGACAGTTTTGA+GGG - tig0035015:6103-6122 None:intergenic 35.0%
GCACAAATGACATATACTCT+GGG - tig0035015:6196-6215 None:intergenic 35.0%
AGAATGCACATACTCTATTC+TGG - tig0035015:6319-6338 None:intergenic 35.0%
!! TATCCGGTTTTATATCCCTA+TGG - tig0035015:6353-6372 None:intergenic 35.0%
AAAACCGGATAACTTTCTCA+TGG + tig0035015:6362-6381 Msa1454050:CDS 35.0%
AAACCGGATAACTTTCTCAT+GGG + tig0035015:6363-6382 Msa1454050:CDS 35.0%
AAACTGTATATTCACTCACC+AGG - tig0035015:6407-6426 None:intergenic 35.0%
GATCAGTCAATTCTAAATGC+AGG - tig0035015:6441-6460 None:intergenic 35.0%
AAACCCGGTAAAAAAAAGAG+GGG - tig0035015:6660-6679 None:intergenic 35.0%
CAAACCCGGTAAAAAAAAGA+GGG - tig0035015:6661-6680 None:intergenic 35.0%
TCAAACCCGGTAAAAAAAAG+AGG - tig0035015:6662-6681 None:intergenic 35.0%
AGGGAGAACAAAAACTTAAC+CGG + tig0035015:6793-6812 Msa1454050:intron 35.0%
!! GAAAGTATCAACTCCTATTG+AGG + tig0035015:7176-7195 Msa1454050:CDS 35.0%
TATTCCATTCCACAAAGATG+TGG + tig0035015:7541-7560 Msa1454050:intron 35.0%
ATTCCATTCCACAAAGATGT+GGG + tig0035015:7542-7561 Msa1454050:intron 35.0%
TCATAAACCAGAAATGAGTG+GGG - tig0035015:7863-7882 None:intergenic 35.0%
GTCATAAACCAGAAATGAGT+GGG - tig0035015:7864-7883 None:intergenic 35.0%
TGTCATAAACCAGAAATGAG+TGG - tig0035015:7865-7884 None:intergenic 35.0%
!! ACTCATTTCTGGTTTATGAC+AGG + tig0035015:7864-7883 Msa1454050:intron 35.0%
TTCCAGTTTAAATCATCAGG+CGG + tig0035015:8264-8283 Msa1454050:CDS 35.0%
ATCATCAGGCGGTAAAAATT+TGG + tig0035015:8275-8294 Msa1454050:CDS 35.0%
AGAATGTAAGTCGTCTTACT+TGG + tig0035015:8319-8338 Msa1454050:intron 35.0%
TCGTCTTACTTGGAGTAAAA+AGG + tig0035015:8329-8348 Msa1454050:intron 35.0%
! CAAAAGAGTGTGAAGTAGAA+GGG - tig0035015:8506-8525 None:intergenic 35.0%
! TCAAAAGAGTGTGAAGTAGA+AGG - tig0035015:8507-8526 None:intergenic 35.0%
!!! ACTCTTTTGAAGCATCAAGA+AGG + tig0035015:8517-8536 Msa1454050:CDS 35.0%
GTATACTGTGCTATGTTTCT+AGG + tig0035015:8754-8773 Msa1454050:intron 35.0%
AAACATGGAGCTGCATATTA+TGG + tig0035015:8813-8832 Msa1454050:intron 35.0%
AACATGGAGCTGCATATTAT+GGG + tig0035015:8814-8833 Msa1454050:intron 35.0%
AATCATTTGCAGTCACCTTA+GGG - tig0035015:8943-8962 None:intergenic 35.0%
GTATAAAATACAGACTGCAC+AGG + tig0035015:8968-8987 Msa1454050:intron 35.0%
GATTTGTGCCGTATAATAAG+TGG + tig0035015:9107-9126 Msa1454050:intron 35.0%
! GGTCATACATTCTGAAAACA+AGG - tig0035015:9364-9383 None:intergenic 35.0%
! CTTTTGCATCTGATTCATTG+TGG - tig0035015:9385-9404 None:intergenic 35.0%
GGTTTCTTCTCAAACATCAA+AGG + tig0035015:9432-9451 Msa1454050:intron 35.0%
!!! AACATCAAAGGTAGTTTTGG+TGG + tig0035015:9444-9463 Msa1454050:intron 35.0%
AAACCACACAATCGAATGTT+TGG - tig0035015:9486-9505 None:intergenic 35.0%
TAGAGTAAATGACATCTAGG+TGG + tig0035015:10023-10042 Msa1454050:three_prime_UTR 35.0%
AATGTCCACATCCATTGAAA+AGG + tig0035015:10113-10132 Msa1454050:three_prime_UTR 35.0%
! TTTCTCCTTTTCAATGGATG+TGG - tig0035015:10121-10140 None:intergenic 35.0%
GGATCATATGTATGAAGAAG+GGG - tig0035015:10227-10246 None:intergenic 35.0%
GAGGATCATATGTATGAAGA+AGG - tig0035015:10229-10248 None:intergenic 35.0%
! AATTCTTATTTCGGTCCTCA+CGG - tig0035015:10255-10274 None:intergenic 35.0%
AAATGAATTCAACACGCGGA+CGG - tig0035015:4368-4387 None:intergenic 40.0%
! TTCAAGTTAGGACGCAAGAT+CGG + tig0035015:4520-4539 Msa1454050:CDS 40.0%
TCCTTCGGTGAAATCTATCT+CGG + tig0035015:4550-4569 Msa1454050:CDS 40.0%
TGTACGAGATACTGTGATTC+TGG + tig0035015:4846-4865 Msa1454050:intron 40.0%
AAGTATGTTTGGTATCACCG+GGG - tig0035015:4877-4896 None:intergenic 40.0%
ACCATGAGATACTGTGATTC+TGG + tig0035015:4973-4992 Msa1454050:intron 40.0%
TTGTTACCGCAATGCATGTT+TGG + tig0035015:5228-5247 Msa1454050:intron 40.0%
TTTAGGGACAATTGAGACGT+TGG - tig0035015:5573-5592 None:intergenic 40.0%
TTGTCAAGTATCCGCTATAG+TGG + tig0035015:5717-5736 Msa1454050:intron 40.0%
ATAAGATGGAGTGGTGTAGA+CGG + tig0035015:6000-6019 Msa1454050:CDS 40.0%
! GGAAGACAATGTGCTTGTTA+TGG + tig0035015:6023-6042 Msa1454050:CDS 40.0%
! CCAACATCAAGACAGTTTTG+AGG - tig0035015:6104-6123 None:intergenic 40.0%
CCTCAAAACTGTCTTGATGT+TGG + tig0035015:6101-6120 Msa1454050:CDS 40.0%
! CTTGATGTTGGCTGATCAAA+TGG + tig0035015:6113-6132 Msa1454050:CDS 40.0%
TACGAAAGCCGGAACTAAAA+GGG - tig0035015:6149-6168 None:intergenic 40.0%
GGCACAAATGACATATACTC+TGG - tig0035015:6197-6216 None:intergenic 40.0%
ATAACCACATGACAAGACAG+TGG - tig0035015:6218-6237 None:intergenic 40.0%
! CGGGAAGTGTGCAATTATAA+AGG + tig0035015:6247-6266 Msa1454050:intron 40.0%
! ATTCTAAAGGGTTCCTCCAT+AGG + tig0035015:6334-6353 Msa1454050:CDS 40.0%
! TTCTAAAGGGTTCCTCCATA+GGG + tig0035015:6335-6354 Msa1454050:CDS 40.0%
CCTCCATAGGGATATAAAAC+CGG + tig0035015:6347-6366 Msa1454050:CDS 40.0%
AGTCCCATGAGAAAGTTATC+CGG - tig0035015:6369-6388 None:intergenic 40.0%
GATAACTTTCTCATGGGACT+TGG + tig0035015:6369-6388 Msa1454050:CDS 40.0%
TCGATGAAACAACTAGCTCA+AGG - tig0035015:6472-6491 None:intergenic 40.0%
TTGGGCTTGCAAAACGATAT+CGG + tig0035015:6549-6568 Msa1454050:CDS 40.0%
TTCAAAACCTGTATGGGATG+TGG - tig0035015:6592-6611 None:intergenic 40.0%
!!! TTCCCCCCTCTTTTTTTTAC+CGG + tig0035015:6653-6672 Msa1454050:intron 40.0%
AACCCGGTAAAAAAAAGAGG+GGG - tig0035015:6659-6678 None:intergenic 40.0%
GGGAGAACAAAAACTTAACC+GGG + tig0035015:6794-6813 Msa1454050:intron 40.0%
CAAGCTGCAATACTCATCTT+GGG + tig0035015:6830-6849 Msa1454050:CDS 40.0%
TGCAATACTCATCTTGGGAT+TGG + tig0035015:6835-6854 Msa1454050:CDS 40.0%
TATTTGTAGAACAAAGCCGC+CGG + tig0035015:6933-6952 Msa1454050:intron 40.0%
! TTTTGTACTTCCTCAGAGGA+AGG + tig0035015:6984-7003 Msa1454050:CDS 40.0%
! TAATTGTGTTTAGCCTTCCC+TGG + tig0035015:7100-7119 Msa1454050:intron 40.0%
AAGTACGAAGCAAACTCTAC+AGG - tig0035015:7301-7320 None:intergenic 40.0%
AGGTCAAAGAATGGCAGTAA+TGG - tig0035015:7324-7343 None:intergenic 40.0%
GCTGATCAAAGGTCAAAGAA+TGG - tig0035015:7333-7352 None:intergenic 40.0%
ATAATCAGGTCGCTGATCAA+AGG - tig0035015:7344-7363 None:intergenic 40.0%
TTTGATCAGCGACCTGATTA+TGG + tig0035015:7343-7362 Msa1454050:CDS 40.0%
GACCTGATTATGGATTCTTG+AGG + tig0035015:7353-7372 Msa1454050:CDS 40.0%
GAGCAAATAACTCCCGAAAT+AGG - tig0035015:7381-7400 None:intergenic 40.0%
!! GAATGTTGGTTCAGTTGGTA+TGG + tig0035015:7508-7527 Msa1454050:intron 40.0%
TGATTTGAGGACTCTGATAG+TGG + tig0035015:7580-7599 Msa1454050:intron 40.0%
GATTTGAGGACTCTGATAGT+GGG + tig0035015:7581-7600 Msa1454050:intron 40.0%
ATGTGTTATGGAAAGCCTCA+AGG - tig0035015:7641-7660 None:intergenic 40.0%
CATAACACATATTGAGCCTG+CGG + tig0035015:7651-7670 Msa1454050:intron 40.0%
ATAACACATATTGAGCCTGC+GGG + tig0035015:7652-7671 Msa1454050:intron 40.0%
TGAGTGGGGATGTTACATTT+CGG - tig0035015:7849-7868 None:intergenic 40.0%
! ATTGACAATGCCGCTTATAC+AGG + tig0035015:8186-8205 Msa1454050:intron 40.0%
! TTGACAATGCCGCTTATACA+GGG + tig0035015:8187-8206 Msa1454050:intron 40.0%
TACCGCCTGATGATTTAAAC+TGG - tig0035015:8269-8288 None:intergenic 40.0%
! TTGGCTTCTGAGAATCATCT+TGG + tig0035015:8294-8313 Msa1454050:CDS 40.0%
ATTCCTTGCTACTGAATCTG+CGG + tig0035015:8356-8375 Msa1454050:intron 40.0%
AAATTGGTCCTTCAAGCAGT+CGG + tig0035015:8604-8623 Msa1454050:CDS 40.0%
CAGTGGTCAATGATATGAGT+GGG - tig0035015:8733-8752 None:intergenic 40.0%
TCCATGTTTGTATGCATGCA+GGG - tig0035015:8802-8821 None:intergenic 40.0%
ACATGGAGCTGCATATTATG+GGG + tig0035015:8815-8834 Msa1454050:intron 40.0%
TAGCACATTAGTAGTCTCCA+CGG - tig0035015:8862-8881 None:intergenic 40.0%
GAGACTACTAATGTGCTACA+AGG + tig0035015:8864-8883 Msa1454050:intron 40.0%
GGGAAATGAGCAACATAAAC+TGG - tig0035015:8920-8939 None:intergenic 40.0%
ATCATTTGCAGTCACCTTAG+GGG - tig0035015:8942-8961 None:intergenic 40.0%
CAATCATTTGCAGTCACCTT+AGG - tig0035015:8944-8963 None:intergenic 40.0%
GGTGACTGCAAATGATTGTT+TGG + tig0035015:8946-8965 Msa1454050:intron 40.0%
ACAAATCACAAGTGGCAAGA+GGG - tig0035015:9094-9113 None:intergenic 40.0%
TATACGGCACAAATCACAAG+TGG - tig0035015:9102-9121 None:intergenic 40.0%
AAGTGCACTGTATCTTATGC+AGG - tig0035015:9271-9290 None:intergenic 40.0%
ACAAGCTGCTTACCATTTCA+TGG - tig0035015:9335-9354 None:intergenic 40.0%
TGAAATGGTAAGCAGCTTGT+CGG + tig0035015:9335-9354 Msa1454050:intron 40.0%
CAAGATGACTCCCGAAATAA+TGG + tig0035015:9411-9430 Msa1454050:intron 40.0%
CTTCCAAACATTCGATTGTG+TGG + tig0035015:9480-9499 Msa1454050:intron 40.0%
! TGTGGTTTAACGTTAGTCTG+AGG + tig0035015:9498-9517 Msa1454050:intron 40.0%
ATTTCAATGTGACCAAGGTG+TGG + tig0035015:9779-9798 Msa1454050:intron 40.0%
! ATGGTGGAGATCATGAAAGA+TGG + tig0035015:10167-10186 Msa1454050:three_prime_UTR 40.0%
! ATTCTTATTTCGGTCCTCAC+GGG - tig0035015:10254-10273 None:intergenic 40.0%
!!! TTTTAGTTTCCCCGTCAATG+CGG + tig0035015:10338-10357 Msa1454050:three_prime_UTR 40.0%
! TAGTATTATCCGCATTGACG+GGG - tig0035015:10350-10369 None:intergenic 40.0%
! CTAGTATTATCCGCATTGAC+GGG - tig0035015:10351-10370 None:intergenic 40.0%
CCTAGTATTATCCGCATTGA+CGG - tig0035015:10352-10371 None:intergenic 40.0%
! GTTTTCCTTTTCCATTGCGG+TGG + tig0035015:4396-4415 Msa1454050:five_prime_UTR 45.0%
AAGATCGGAAGTGGATCCTT+CGG + tig0035015:4535-4554 Msa1454050:CDS 45.0%
ACCGAGATAGATTTCACCGA+AGG - tig0035015:4554-4573 None:intergenic 45.0%
GCCAGAATCACAGTATCTCA+TGG - tig0035015:4977-4996 None:intergenic 45.0%
CTGACACCAAACATGCATTG+CGG - tig0035015:5237-5256 None:intergenic 45.0%
!! TATAGTGGTGCTATAGCGCT+GGG + tig0035015:5732-5751 Msa1454050:intron 45.0%
GTGGTATCCCAAGCATAAGA+TGG + tig0035015:5986-6005 Msa1454050:CDS 45.0%
ATCCCAAGCATAAGATGGAG+TGG + tig0035015:5991-6010 Msa1454050:CDS 45.0%
CACCACTCCATCTTATGCTT+GGG - tig0035015:5996-6015 None:intergenic 45.0%
ACACCACTCCATCTTATGCT+TGG - tig0035015:5997-6016 None:intergenic 45.0%
TAAGATGGAGTGGTGTAGAC+GGG + tig0035015:6001-6020 Msa1454050:CDS 45.0%
AAGCCGGAACTAAAAGGGAT+GGG - tig0035015:6144-6163 None:intergenic 45.0%
AAAGCCGGAACTAAAAGGGA+TGG - tig0035015:6145-6164 None:intergenic 45.0%
CTACGAAAGCCGGAACTAAA+AGG - tig0035015:6150-6169 None:intergenic 45.0%
CATGTGGTTATGATGCCAAG+CGG + tig0035015:6227-6246 Msa1454050:intron 45.0%
ATGTGGTTATGATGCCAAGC+GGG + tig0035015:6228-6247 Msa1454050:intron 45.0%
ATAATTGCACACTTCCCGCT+TGG - tig0035015:6245-6264 None:intergenic 45.0%
!! CCGGTTTTATATCCCTATGG+AGG - tig0035015:6350-6369 None:intergenic 45.0%
! ACTTTCTCATGGGACTTGGT+CGG + tig0035015:6373-6392 Msa1454050:CDS 45.0%
CAACTAGCTCAAGGAATGAC+AGG - tig0035015:6463-6482 None:intergenic 45.0%
TGGGCTTGCAAAACGATATC+GGG + tig0035015:6550-6569 Msa1454050:CDS 45.0%
!!! TCCCCCCTCTTTTTTTTACC+GGG + tig0035015:6654-6673 Msa1454050:intron 45.0%
ACCCGGTAAAAAAAAGAGGG+GGG - tig0035015:6658-6677 None:intergenic 45.0%
GATGAGAAGAGCAGAGGTAA+AGG - tig0035015:6729-6748 None:intergenic 45.0%
GCAAGCTGCAATACTCATCT+TGG + tig0035015:6829-6848 Msa1454050:CDS 45.0%
ATTTGTAGAACAAAGCCGCC+GGG + tig0035015:6934-6953 Msa1454050:intron 45.0%
CAAGAGACTCCAAATCATCC+CGG - tig0035015:6955-6974 None:intergenic 45.0%
! GTGCTTTTGTACTTCCTCAG+AGG + tig0035015:6980-6999 Msa1454050:CDS 45.0%
TACTTCCTCAGAGGAAGGTA+TGG + tig0035015:6989-7008 Msa1454050:intron 45.0%
CGAAGCAAACTCTACAGGAT+GGG - tig0035015:7296-7315 None:intergenic 45.0%
ACGAAGCAAACTCTACAGGA+TGG - tig0035015:7297-7316 None:intergenic 45.0%
CGCCTCAAGAATCCATAATC+AGG - tig0035015:7358-7377 None:intergenic 45.0%
! GATTCTTGAGGCGCCTATTT+CGG + tig0035015:7365-7384 Msa1454050:CDS 45.0%
! ATTCTTGAGGCGCCTATTTC+GGG + tig0035015:7366-7385 Msa1454050:CDS 45.0%
! CATTCGTTGGCTGGTGATTT+AGG - tig0035015:7493-7512 None:intergenic 45.0%
AATCACCAGCCAACGAATGT+TGG + tig0035015:7494-7513 Msa1454050:intron 45.0%
CCAACTGAACCAACATTCGT+TGG - tig0035015:7506-7525 None:intergenic 45.0%
!! CCAACGAATGTTGGTTCAGT+TGG + tig0035015:7503-7522 Msa1454050:intron 45.0%
GAACCCACATCTTTGTGGAA+TGG - tig0035015:7548-7567 None:intergenic 45.0%
CATTCGAACCCACATCTTTG+TGG - tig0035015:7553-7572 None:intergenic 45.0%
GGCTCAATAAGCGCTTATAG+AGG - tig0035015:7620-7639 None:intergenic 45.0%
TAAGCGCTTATTGAGCCTTG+AGG + tig0035015:7623-7642 Msa1454050:intron 45.0%
CGCAGGCTCAATATGTGTTA+TGG - tig0035015:7653-7672 None:intergenic 45.0%
GTAACATCCCCACTCATTTC+TGG + tig0035015:7853-7872 Msa1454050:intron 45.0%
! CTCTACTCTTTTGTGACTGC+TGG - tig0035015:7932-7951 None:intergenic 45.0%
ACTTACGGATATGTGAGGCT+GGG - tig0035015:7955-7974 None:intergenic 45.0%
TACTTACGGATATGTGAGGC+TGG - tig0035015:7956-7975 None:intergenic 45.0%
GTGTGTGTGTGTGTGTAGAT+TGG + tig0035015:7995-8014 Msa1454050:intron 45.0%
TTCCTGTAGCGAGCAACAAT+CGG + tig0035015:8071-8090 Msa1454050:CDS 45.0%
! TGACAATGCCGCTTATACAG+GGG + tig0035015:8188-8207 Msa1454050:intron 45.0%
TGAGACATCCCCTGTATAAG+CGG - tig0035015:8199-8218 None:intergenic 45.0%
TTATACAGGGGATGTCTCAG+CGG + tig0035015:8200-8219 Msa1454050:intron 45.0%
GAACTTAACACCGGAAGAAG+CGG - tig0035015:8247-8266 None:intergenic 45.0%
AAGCTGCAAACCATAGGCAT+GGG + tig0035015:8568-8587 Msa1454050:CDS 45.0%
ACATTCATCCGACTGCTTGA+AGG - tig0035015:8615-8634 None:intergenic 45.0%
TACTCAATGCAGCACATGTG+CGG - tig0035015:8693-8712 None:intergenic 45.0%
GCAGTGGTCAATGATATGAG+TGG - tig0035015:8734-8753 None:intergenic 45.0%
ACATAGCACAGTATACGCAG+TGG - tig0035015:8750-8769 None:intergenic 45.0%
TCCCTGCATGCATACAAACA+TGG + tig0035015:8798-8817 Msa1454050:intron 45.0%
CTCCATGTTTGTATGCATGC+AGG - tig0035015:8803-8822 None:intergenic 45.0%
AGCACATTAGTAGTCTCCAC+GGG - tig0035015:8861-8880 None:intergenic 45.0%
TCATTTGCAGTCACCTTAGG+GGG - tig0035015:8941-8960 None:intergenic 45.0%
AAATACAGACTGCACAGGCT+TGG + tig0035015:8973-8992 Msa1454050:intron 45.0%
CAAATCACAAGTGGCAAGAG+GGG - tig0035015:9093-9112 None:intergenic 45.0%
CACAAATCACAAGTGGCAAG+AGG - tig0035015:9095-9114 None:intergenic 45.0%
ATTGCAGTTTGTCCACACCT+TGG - tig0035015:9794-9813 None:intergenic 45.0%
ATATCTCTTCATACGGGCGA+TGG + tig0035015:10062-10081 Msa1454050:three_prime_UTR 45.0%
CCGTCAATGCGGATAATACT+AGG + tig0035015:10349-10368 Msa1454050:three_prime_UTR 45.0%
TGCGGATAATACTAGGTCAC+CGG + tig0035015:10356-10375 Msa1454050:three_prime_UTR 45.0%
ACAAGAACTAGCACAAGACC+CGG - tig0035015:10378-10397 None:intergenic 45.0%
!!! GTTTTTTTTTTTTTTTAATT+TGG + tig0035015:6283-6302 Msa1454050:intron 5.0%
AGTAGCCACCGCAATGGAAA+AGG - tig0035015:4404-4423 None:intergenic 50.0%
TTAGGACGCAAGATCGGAAG+TGG + tig0035015:4526-4545 Msa1454050:CDS 50.0%
CTTGACAGCAACGATCTCGA+AGG - tig0035015:4703-4722 None:intergenic 50.0%
CTGTGATTCTGGCATATCCC+CGG + tig0035015:4857-4876 Msa1454050:intron 50.0%
TCTGTTGTGTTGCAGGAGAC+TGG + tig0035015:5378-5397 Msa1454050:intron 50.0%
AGGGACAATTGAGACGTTGG+AGG - tig0035015:5570-5589 None:intergenic 50.0%
GCGCTATAGCACCACTATAG+CGG - tig0035015:5731-5750 None:intergenic 50.0%
!! CTATAGTGGTGCTATAGCGC+TGG + tig0035015:5731-5750 Msa1454050:intron 50.0%
!! ATAGTGGTGCTATAGCGCTG+GGG + tig0035015:5733-5752 Msa1454050:intron 50.0%
AAGATGGAGTGGTGTAGACG+GGG + tig0035015:6002-6021 Msa1454050:CDS 50.0%
!! TTTGTTGGGCCCTAGTCTTG+AGG + tig0035015:6047-6066 Msa1454050:CDS 50.0%
!!! ACCCCCATCCCTTTTAGTTC+CGG + tig0035015:6138-6157 Msa1454050:intron 50.0%
AGCCGGAACTAAAAGGGATG+GGG - tig0035015:6143-6162 None:intergenic 50.0%
CATCACAAGGCTACGAAAGC+CGG - tig0035015:6160-6179 None:intergenic 50.0%
! TGTGCCACTGTCTTGTCATG+TGG + tig0035015:6211-6230 Msa1454050:intron 50.0%
GTGCTTGTGCTGTACATGTC+AGG + tig0035015:6511-6530 Msa1454050:intron 50.0%
CTAAGGGATGAGAAGAGCAG+AGG - tig0035015:6735-6754 None:intergenic 50.0%
! CGGGATGATTTGGAGTCTCT+TGG + tig0035015:6953-6972 Msa1454050:CDS 50.0%
GAATGCCATACCTTCCTCTG+AGG - tig0035015:6997-7016 None:intergenic 50.0%
!! CCTTTAGGTTTTGCCAGGGA+AGG - tig0035015:7116-7135 None:intergenic 50.0%
CCTTCCCTGGCAAAACCTAA+AGG + tig0035015:7113-7132 Msa1454050:CDS 50.0%
!! GCAGCCTTTAGGTTTTGCCA+GGG - tig0035015:7120-7139 None:intergenic 50.0%
GCTTCTTTGTCGCAGCCTTT+AGG - tig0035015:7131-7150 None:intergenic 50.0%
GGGCAGATGCTTACCTCAAT+AGG - tig0035015:7192-7211 None:intergenic 50.0%
CGGGAGTTATTTGCTCGAGA+AGG + tig0035015:7385-7404 Msa1454050:CDS 50.0%
CTGAACCAACATTCGTTGGC+TGG - tig0035015:7502-7521 None:intergenic 50.0%
CAGAGTCCTCAAATCAGCCA+CGG - tig0035015:7576-7595 None:intergenic 50.0%
TTGTTGCTCGCTACAGGAAC+CGG - tig0035015:8070-8089 None:intergenic 50.0%
TCCTGTAGCGAGCAACAATC+GGG + tig0035015:8072-8091 Msa1454050:CDS 50.0%
GGTTCAAGCACCAACCTTGT+TGG - tig0035015:8120-8139 None:intergenic 50.0%
! TCAGACAATGCCGCTTCTTC+CGG + tig0035015:8234-8253 Msa1454050:CDS 50.0%
GTTCCGCAGATTCAGTAGCA+AGG - tig0035015:8362-8381 None:intergenic 50.0%
! CCTATGGTTTGCAGCTTCAG+TGG - tig0035015:8565-8584 None:intergenic 50.0%
CCACTGAAGCTGCAAACCAT+AGG + tig0035015:8562-8581 Msa1454050:CDS 50.0%
GAAGCTGCAAACCATAGGCA+TGG + tig0035015:8567-8586 Msa1454050:CDS 50.0%
CAAACCATAGGCATGGGCAA+GGG + tig0035015:8574-8593 Msa1454050:CDS 50.0%
GGGCAAGGGAGCAGTAAAAT+TGG + tig0035015:8588-8607 Msa1454050:CDS 50.0%
TGTTGCTCATTTCCCCCCTA+AGG + tig0035015:8925-8944 Msa1454050:intron 50.0%
CATTTGCAGTCACCTTAGGG+GGG - tig0035015:8940-8959 None:intergenic 50.0%
ATGGATCCTCTCGTGTCATG+AGG + tig0035015:10081-10100 Msa1454050:three_prime_UTR 50.0%
TGGATCCTCTCGTGTCATGA+GGG + tig0035015:10082-10101 Msa1454050:three_prime_UTR 50.0%
ATAGACCCTCATGACACGAG+AGG - tig0035015:10090-10109 None:intergenic 50.0%
CATATGATCCTCAACCCGTG+AGG + tig0035015:10237-10256 Msa1454050:three_prime_UTR 50.0%
GCGGATAATACTAGGTCACC+GGG + tig0035015:10357-10376 Msa1454050:three_prime_UTR 50.0%
GAATTCAACACGCGGACGGA+TGG - tig0035015:4364-4383 None:intergenic 55.0%
GAAGAGAGTAGCCACCGCAA+TGG - tig0035015:4410-4429 None:intergenic 55.0%
GCCGGAACTAAAAGGGATGG+GGG - tig0035015:6142-6161 None:intergenic 55.0%
! TCTCATGGGACTTGGTCGGA+AGG + tig0035015:6377-6396 Msa1454050:CDS 55.0%
ACTTGGTCGGAAGGCAAACC+TGG + tig0035015:6386-6405 Msa1454050:CDS 55.0%
! TGGGATGTGGCGATTGGTTG+TGG - tig0035015:6579-6598 None:intergenic 55.0%
CCTGTATGGGATGTGGCGAT+TGG - tig0035015:6585-6604 None:intergenic 55.0%
CCAATCGCCACATCCCATAC+AGG + tig0035015:6582-6601 Msa1454050:CDS 55.0%
ACAAAGCCGCCGGGATGATT+TGG + tig0035015:6943-6962 Msa1454050:CDS 55.0%
GAGACTCCAAATCATCCCGG+CGG - tig0035015:6952-6971 None:intergenic 55.0%
!! CGCAGCCTTTAGGTTTTGCC+AGG - tig0035015:7121-7140 None:intergenic 55.0%
AGATGTGGGTTCGAATGCCG+TGG + tig0035015:7556-7575 Msa1454050:intron 55.0%
!! CGAATGCCGTGGCTGATTTG+AGG + tig0035015:7567-7586 Msa1454050:intron 55.0%
!! TTAGGTGGATTGAGTCCCGC+AGG - tig0035015:7670-7689 None:intergenic 55.0%
CAACAATCGGGCAATGCCCA+TGG + tig0035015:8084-8103 Msa1454050:CDS 55.0%
GTTTGCAGCTTCAGTGGACG+CGG - tig0035015:8559-8578 None:intergenic 55.0%
GCAAACCATAGGCATGGGCA+AGG + tig0035015:8573-8592 Msa1454050:CDS 55.0%
CAAGTGGCAAGAGGGGCAAA+TGG - tig0035015:9086-9105 None:intergenic 55.0%
! ATTTCGGTCCTCACGGGTTG+AGG - tig0035015:10248-10267 None:intergenic 55.0%
TCAACACGCGGACGGATGGA+CGG - tig0035015:4360-4379 None:intergenic 60.0%
GCTTGCATAACGCGCAGTCC+CGG - tig0035015:6815-6834 None:intergenic 60.0%
GCCCGATTGTTGCTCGCTAC+AGG - tig0035015:8076-8095 None:intergenic 60.0%
AGTGGACGCGGAAGGCTTCA+AGG - tig0035015:8547-8566 None:intergenic 60.0%
TGCTCCCTTGCCCATGCCTA+TGG - tig0035015:8581-8600 None:intergenic 60.0%
GCTTGCAAGTGATCTGCCCG+TGG + tig0035015:8842-8861 Msa1454050:intron 60.0%
GCAGCTTCAGTGGACGCGGA+AGG - tig0035015:8555-8574 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0035015 gene 4304 10419 4304 ID=Msa1454050;Name=Msa1454050
tig0035015 mRNA 4304 10419 4304 ID=Msa1454050-mRNA-1;Parent=Msa1454050;Name=Msa1454050-mRNA-1;_AED=0.19;_eAED=0.19;_QI=192|0.92|0.93|1|0.92|0.93|15|495|427
tig0035015 exon 4304 4571 4304 ID=Msa1454050-mRNA-1:exon:19475;Parent=Msa1454050-mRNA-1
tig0035015 exon 4685 4725 4685 ID=Msa1454050-mRNA-1:exon:19476;Parent=Msa1454050-mRNA-1
tig0035015 exon 5393 5462 5393 ID=Msa1454050-mRNA-1:exon:19477;Parent=Msa1454050-mRNA-1
tig0035015 exon 5986 6134 5986 ID=Msa1454050-mRNA-1:exon:19478;Parent=Msa1454050-mRNA-1
tig0035015 exon 6312 6407 6312 ID=Msa1454050-mRNA-1:exon:19479;Parent=Msa1454050-mRNA-1
tig0035015 exon 6533 6603 6533 ID=Msa1454050-mRNA-1:exon:19480;Parent=Msa1454050-mRNA-1
tig0035015 exon 6795 6856 6795 ID=Msa1454050-mRNA-1:exon:19481;Parent=Msa1454050-mRNA-1
tig0035015 exon 6942 7005 6942 ID=Msa1454050-mRNA-1:exon:19482;Parent=Msa1454050-mRNA-1
tig0035015 exon 7113 7197 7113 ID=Msa1454050-mRNA-1:exon:19483;Parent=Msa1454050-mRNA-1
tig0035015 exon 7280 7406 7280 ID=Msa1454050-mRNA-1:exon:19484;Parent=Msa1454050-mRNA-1
tig0035015 exon 7886 7968 7886 ID=Msa1454050-mRNA-1:exon:19485;Parent=Msa1454050-mRNA-1
tig0035015 exon 8067 8124 8067 ID=Msa1454050-mRNA-1:exon:19486;Parent=Msa1454050-mRNA-1
tig0035015 exon 8208 8323 8208 ID=Msa1454050-mRNA-1:exon:19487;Parent=Msa1454050-mRNA-1
tig0035015 exon 8483 8632 8483 ID=Msa1454050-mRNA-1:exon:19488;Parent=Msa1454050-mRNA-1
tig0035015 exon 9889 10419 9889 ID=Msa1454050-mRNA-1:exon:19489;Parent=Msa1454050-mRNA-1
tig0035015 five_prime_UTR 4304 4495 4304 ID=Msa1454050-mRNA-1:five_prime_utr;Parent=Msa1454050-mRNA-1
tig0035015 CDS 4496 4571 4496 ID=Msa1454050-mRNA-1:cds;Parent=Msa1454050-mRNA-1
tig0035015 CDS 4685 4725 4685 ID=Msa1454050-mRNA-1:cds;Parent=Msa1454050-mRNA-1
tig0035015 CDS 5393 5462 5393 ID=Msa1454050-mRNA-1:cds;Parent=Msa1454050-mRNA-1
tig0035015 CDS 5986 6134 5986 ID=Msa1454050-mRNA-1:cds;Parent=Msa1454050-mRNA-1
tig0035015 CDS 6312 6407 6312 ID=Msa1454050-mRNA-1:cds;Parent=Msa1454050-mRNA-1
tig0035015 CDS 6533 6603 6533 ID=Msa1454050-mRNA-1:cds;Parent=Msa1454050-mRNA-1
tig0035015 CDS 6795 6856 6795 ID=Msa1454050-mRNA-1:cds;Parent=Msa1454050-mRNA-1
tig0035015 CDS 6942 7005 6942 ID=Msa1454050-mRNA-1:cds;Parent=Msa1454050-mRNA-1
tig0035015 CDS 7113 7197 7113 ID=Msa1454050-mRNA-1:cds;Parent=Msa1454050-mRNA-1
tig0035015 CDS 7280 7406 7280 ID=Msa1454050-mRNA-1:cds;Parent=Msa1454050-mRNA-1
tig0035015 CDS 7886 7968 7886 ID=Msa1454050-mRNA-1:cds;Parent=Msa1454050-mRNA-1
tig0035015 CDS 8067 8124 8067 ID=Msa1454050-mRNA-1:cds;Parent=Msa1454050-mRNA-1
tig0035015 CDS 8208 8323 8208 ID=Msa1454050-mRNA-1:cds;Parent=Msa1454050-mRNA-1
tig0035015 CDS 8483 8632 8483 ID=Msa1454050-mRNA-1:cds;Parent=Msa1454050-mRNA-1
tig0035015 CDS 9889 9924 9889 ID=Msa1454050-mRNA-1:cds;Parent=Msa1454050-mRNA-1
tig0035015 three_prime_UTR 9925 10419 9925 ID=Msa1454050-mRNA-1:three_prime_utr;Parent=Msa1454050-mRNA-1
Gene Sequence

>Msa1454050

ATGGATCGAATCATCGGTGATAAATTCAAGTTAGGACGCAAGATCGGAAGTGGATCCTTCGGTGAAATCTATCTCGCTACTCATATTGATACCTTCGAGATCGTTGCTGTCAAGATCGAGACTGGTAAAACGAAGCATCCACAATTGCTTTATGAAGCCAAGCTCTATAATATTCTTCAAGGAGGAAGTGGTATCCCAAGCATAAGATGGAGTGGTGTAGACGGGGAAGACAATGTGCTTGTTATGGATTTGTTGGGCCCTAGTCTTGAGGATCTTTTTGTTTACTGTGGAAGAAAATTTTCCCTCAAAACTGTCTTGATGTTGGCTGATCAAATGATGACCAGAATAGAGTATGTGCATTCTAAAGGGTTCCTCCATAGGGATATAAAACCGGATAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCTGGTATATGTAATTGATTTTGGGCTTGCAAAACGATATCGGGACTCCACAACCAATCGCCACATCCCATACAGGGAGAACAAAAACTTAACCGGGACTGCGCGTTATGCAAGCTGCAATACTCATCTTGGGATTGAACAAAGCCGCCGGGATGATTTGGAGTCTCTTGGATACGTGCTTTTGTACTTCCTCAGAGGAAGCCTTCCCTGGCAAAACCTAAAGGCTGCGACAAAGAAGCAGAAGTATGATAAAATATGTGAAAAGAAAGTATCAACTCCTATTGAGGTTTTATGCAAATCCCATCCTGTAGAGTTTGCTTCGTACTTCCATTACTGCCATTCTTTGACCTTTGATCAGCGACCTGATTATGGATTCTTGAGGCGCCTATTTCGGGAGTTATTTGCTCGAGAAGGTTACAAATTTGATTATGTATTTGATTGGACAATTTTGAAGTACCAGCAGTCACAAAAGAGTAGAGCCCAGCCTCACATATCCCCGGTTCCTGTAGCGAGCAACAATCGGGCAATGCCCATGGATATTGATAACCAACAAGGGGATGTCTCAGCGGAGCAGATTAGATCAGACAATGCCGCTTCTTCCGGTGTTAAGTTCCAGTTTAAATCATCAGGCGGTAAAAATTTGGCTTCTGAGAATCATCTTGGCAAGAATATTTTTGGTGAAGCAACTATCCCTTCTACTTCACACTCTTTTGAAGCATCAAGAAGGAACTCCTTGAAGCCTTCCGCGTCCACTGAAGCTGCAAACCATAGGCATGGGCAAGGGAGCAGTAAAATTGGTCCTTCAAGCAGTCGGATGAATGTCTCTTTTTTTTCTAATCTATATGGCAATGGATGA
Protein sequence

>Msa1454050

MDRIIGDKFKLGRKIGSGSFGEIYLATHIDTFEIVAVKIETGKTKHPQLLYEAKLYNILQGGSGIPSIRWSGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANLVYVIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLRRLFRELFAREGYKFDYVFDWTILKYQQSQKSRAQPHISPVPVASNNRAMPMDIDNQQGDVSAEQIRSDNAASSGVKFQFKSSGGKNLASENHLGKNIFGEATIPSTSHSFEASRRNSLKPSASTEAANHRHGQGSSKIGPSSSRMNVSFFSNLYGNG*