Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454420 | sp|Q9ZWJ9|ARR2_ARATH | 82.581 | 155 | 24 | 1 | 21 | 172 | 14 | 168 | 2.93e-84 | 264 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454420 | A0A396IHJ8 | 100.000 | 176 | 0 | 0 | 1 | 176 | 1 | 176 | 1.82e-123 | 372 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1454420 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454420 | MtrunA17_Chr4g0067981 | 100.000 | 176 | 0 | 0 | 1 | 176 | 1 | 176 | 3.50e-127 | 372 |
| Msa1454420 | MtrunA17_Chr2g0294911 | 82.456 | 171 | 30 | 0 | 6 | 176 | 4 | 174 | 1.31e-98 | 296 |
| Msa1454420 | MtrunA17_Chr1g0161431 | 64.865 | 148 | 52 | 0 | 26 | 173 | 6 | 153 | 9.75e-65 | 209 |
| Msa1454420 | MtrunA17_Chr3g0137101 | 65.957 | 141 | 48 | 0 | 29 | 169 | 6 | 146 | 1.46e-64 | 209 |
| Msa1454420 | MtrunA17_Chr3g0123131 | 73.485 | 132 | 35 | 0 | 31 | 162 | 13 | 144 | 6.26e-64 | 206 |
| Msa1454420 | MtrunA17_Chr1g0149841 | 63.194 | 144 | 53 | 0 | 28 | 171 | 2 | 145 | 2.14e-62 | 200 |
| Msa1454420 | MtrunA17_Chr8g0376881 | 69.403 | 134 | 41 | 0 | 29 | 162 | 23 | 156 | 5.06e-61 | 197 |
| Msa1454420 | MtrunA17_Chr1g0149851 | 62.500 | 144 | 54 | 0 | 28 | 171 | 2 | 145 | 4.88e-60 | 195 |
| Msa1454420 | MtrunA17_Chr7g0275891 | 60.000 | 145 | 57 | 1 | 28 | 171 | 2 | 146 | 1.69e-59 | 188 |
| Msa1454420 | MtrunA17_Chr2g0304841 | 62.411 | 141 | 53 | 0 | 29 | 169 | 16 | 156 | 1.16e-58 | 194 |
| Msa1454420 | MtrunA17_Chr7g0275401 | 55.556 | 144 | 64 | 0 | 28 | 171 | 2 | 145 | 1.87e-54 | 174 |
| Msa1454420 | MtrunA17_Chr4g0074411 | 63.910 | 133 | 47 | 1 | 31 | 163 | 18 | 149 | 4.56e-54 | 180 |
| Msa1454420 | MtrunA17_Chr3g0134481 | 61.069 | 131 | 51 | 0 | 28 | 158 | 5 | 135 | 1.03e-53 | 169 |
| Msa1454420 | MtrunA17_Chr4g0074401 | 64.286 | 126 | 45 | 0 | 29 | 154 | 15 | 140 | 1.55e-53 | 179 |
| Msa1454420 | MtrunA17_Chr3g0134461 | 59.091 | 132 | 53 | 1 | 26 | 156 | 3 | 134 | 7.25e-45 | 146 |
| Msa1454420 | MtrunA17_Chr4g0009901 | 46.970 | 132 | 69 | 1 | 31 | 162 | 10 | 140 | 9.33e-36 | 125 |
| Msa1454420 | MtrunA17_Chr4g0074421 | 67.045 | 88 | 28 | 1 | 81 | 168 | 2 | 88 | 5.00e-35 | 121 |
| Msa1454420 | MtrunA17_Chr4g0009851 | 41.606 | 137 | 79 | 1 | 31 | 167 | 11 | 146 | 1.00e-33 | 121 |
| Msa1454420 | MtrunA17_Chr1g0149831 | 60.976 | 82 | 32 | 0 | 90 | 171 | 1 | 82 | 6.05e-32 | 114 |
| Msa1454420 | MtrunA17_Chr8g0383961 | 43.846 | 130 | 73 | 0 | 30 | 159 | 13 | 142 | 3.04e-31 | 113 |
| Msa1454420 | MtrunA17_Chr6g0471041 | 41.221 | 131 | 76 | 1 | 30 | 159 | 13 | 143 | 1.51e-26 | 103 |
| Msa1454420 | MtrunA17_Chr6g0456631 | 36.220 | 127 | 78 | 2 | 29 | 153 | 7 | 132 | 1.03e-25 | 97.1 |
| Msa1454420 | MtrunA17_Chr8g0391911 | 37.903 | 124 | 75 | 2 | 31 | 153 | 9 | 131 | 6.33e-25 | 97.1 |
| Msa1454420 | MtrunA17_Chr7g0276361 | 38.686 | 137 | 73 | 3 | 25 | 153 | 2 | 135 | 1.87e-23 | 96.3 |
| Msa1454420 | MtrunA17_Chr3g0127941 | 39.516 | 124 | 70 | 2 | 35 | 154 | 56 | 178 | 2.45e-23 | 95.9 |
| Msa1454420 | MtrunA17_Chr4g0030271 | 38.211 | 123 | 71 | 2 | 35 | 153 | 89 | 210 | 6.87e-23 | 94.7 |
| Msa1454420 | MtrunA17_Chr4g0009981 | 45.055 | 91 | 50 | 0 | 76 | 166 | 2 | 92 | 2.50e-22 | 90.1 |
| Msa1454420 | MtrunA17_Chr1g0181811 | 38.525 | 122 | 72 | 1 | 35 | 153 | 85 | 206 | 2.86e-22 | 92.8 |
| Msa1454420 | MtrunA17_Chr8g0345901 | 39.344 | 122 | 67 | 3 | 37 | 153 | 38 | 157 | 3.45e-21 | 89.7 |
| Msa1454420 | MtrunA17_Chr3g0091641 | 34.677 | 124 | 78 | 1 | 35 | 155 | 24 | 147 | 3.87e-20 | 86.7 |
| Msa1454420 | MtrunA17_Chr5g0423031 | 45.679 | 81 | 43 | 1 | 31 | 111 | 10 | 89 | 5.89e-20 | 82.4 |
| Msa1454420 | MtrunA17_Chr4g0061021 | 35.036 | 137 | 83 | 3 | 23 | 155 | 22 | 156 | 7.72e-20 | 85.9 |
| Msa1454420 | MtrunA17_Chr4g0011071 | 38.889 | 90 | 55 | 0 | 78 | 167 | 36 | 125 | 2.43e-19 | 80.5 |
| Msa1454420 | MtrunA17_Chr8g0350761 | 37.500 | 120 | 74 | 1 | 33 | 151 | 19 | 138 | 2.75e-19 | 84.0 |
| Msa1454420 | MtrunA17_Chr4g0010001 | 44.444 | 81 | 44 | 1 | 31 | 111 | 10 | 89 | 2.60e-18 | 75.5 |
| Msa1454420 | MtrunA17_Chr5g0400241 | 36.842 | 133 | 78 | 3 | 26 | 156 | 9 | 137 | 5.85e-17 | 77.4 |
| Msa1454420 | MtrunA17_Chr4g0054981 | 36.220 | 127 | 77 | 2 | 31 | 156 | 14 | 137 | 1.30e-15 | 73.6 |
| Msa1454420 | MtrunA17_Chr7g0256551 | 29.412 | 153 | 86 | 4 | 33 | 163 | 7 | 159 | 4.86e-13 | 65.1 |
| Msa1454420 | MtrunA17_Chr8g0352871 | 27.273 | 143 | 84 | 3 | 35 | 157 | 9 | 151 | 1.30e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454420 | AT3G16857.1 | 83.562 | 146 | 23 | 1 | 29 | 173 | 31 | 176 | 6.63e-83 | 258 |
| Msa1454420 | AT3G16857.2 | 83.562 | 146 | 23 | 1 | 29 | 173 | 31 | 176 | 8.12e-83 | 258 |
| Msa1454420 | AT2G25180.1 | 64.901 | 151 | 53 | 0 | 20 | 170 | 2 | 152 | 9.82e-63 | 203 |
| Msa1454420 | AT1G67710.1 | 67.568 | 148 | 45 | 1 | 32 | 176 | 8 | 155 | 6.78e-62 | 199 |
| Msa1454420 | AT4G31920.1 | 66.000 | 150 | 48 | 1 | 29 | 175 | 11 | 160 | 2.36e-60 | 196 |
| Msa1454420 | AT2G01760.1 | 65.625 | 128 | 43 | 1 | 28 | 154 | 4 | 131 | 7.17e-59 | 188 |
| Msa1454420 | AT3G16857.3 | 81.905 | 105 | 18 | 1 | 70 | 173 | 2 | 106 | 7.30e-54 | 180 |
| Msa1454420 | AT2G01760.2 | 53.846 | 156 | 43 | 2 | 28 | 154 | 4 | 159 | 1.13e-52 | 173 |
| Msa1454420 | AT5G58080.1 | 64.800 | 125 | 43 | 1 | 29 | 153 | 12 | 135 | 3.48e-47 | 162 |
| Msa1454420 | AT5G49240.1 | 46.094 | 128 | 69 | 0 | 28 | 155 | 35 | 162 | 3.66e-35 | 124 |
| Msa1454420 | AT1G49190.1 | 42.361 | 144 | 78 | 1 | 11 | 154 | 15 | 153 | 3.97e-33 | 122 |
| Msa1454420 | AT1G49190.2 | 42.361 | 144 | 78 | 1 | 11 | 154 | 15 | 153 | 1.98e-31 | 119 |
| Msa1454420 | AT1G67710.2 | 64.444 | 90 | 29 | 1 | 90 | 176 | 1 | 90 | 3.23e-31 | 117 |
| Msa1454420 | AT3G62670.1 | 42.857 | 119 | 66 | 1 | 36 | 154 | 42 | 158 | 4.95e-27 | 105 |
| Msa1454420 | AT2G01760.3 | 68.182 | 66 | 20 | 1 | 90 | 154 | 1 | 66 | 1.54e-26 | 102 |
| Msa1454420 | AT2G46790.3 | 39.837 | 123 | 69 | 2 | 35 | 153 | 37 | 158 | 7.18e-25 | 100 |
| Msa1454420 | AT2G46790.1 | 39.837 | 123 | 69 | 2 | 35 | 153 | 37 | 158 | 7.30e-25 | 100 |
| Msa1454420 | AT5G60100.7 | 39.024 | 123 | 70 | 2 | 35 | 153 | 64 | 185 | 1.91e-22 | 93.2 |
| Msa1454420 | AT5G60100.6 | 39.024 | 123 | 70 | 2 | 35 | 153 | 64 | 185 | 1.91e-22 | 93.2 |
| Msa1454420 | AT5G60100.4 | 39.024 | 123 | 70 | 2 | 35 | 153 | 64 | 185 | 1.91e-22 | 93.2 |
| Msa1454420 | AT5G60100.5 | 39.024 | 123 | 70 | 2 | 35 | 153 | 64 | 185 | 3.11e-22 | 92.8 |
| Msa1454420 | AT5G60100.3 | 39.024 | 123 | 70 | 2 | 35 | 153 | 64 | 185 | 3.11e-22 | 92.8 |
| Msa1454420 | AT5G60100.1 | 39.024 | 123 | 70 | 2 | 35 | 153 | 64 | 185 | 3.11e-22 | 92.8 |
| Msa1454420 | AT5G60100.2 | 38.710 | 124 | 71 | 2 | 34 | 153 | 63 | 185 | 3.92e-22 | 92.8 |
| Msa1454420 | AT5G02810.1 | 39.024 | 123 | 70 | 2 | 35 | 153 | 78 | 199 | 7.70e-22 | 92.0 |
| Msa1454420 | AT5G24470.1 | 36.364 | 132 | 79 | 2 | 34 | 161 | 49 | 179 | 6.81e-21 | 89.4 |
| Msa1454420 | AT5G61380.1 | 36.290 | 124 | 76 | 1 | 35 | 155 | 19 | 142 | 2.30e-20 | 87.8 |
| Msa1454420 | AT5G07210.2 | 34.146 | 123 | 78 | 2 | 35 | 156 | 16 | 136 | 3.80e-16 | 75.5 |
| Msa1454420 | AT4G18020.8 | 36.765 | 136 | 77 | 3 | 29 | 157 | 12 | 145 | 8.60e-16 | 74.3 |
| Msa1454420 | AT4G18020.11 | 36.765 | 136 | 77 | 3 | 29 | 157 | 12 | 145 | 8.60e-16 | 74.3 |
| Msa1454420 | AT4G18020.4 | 36.765 | 136 | 77 | 3 | 29 | 157 | 12 | 145 | 8.60e-16 | 74.3 |
| Msa1454420 | AT4G18020.5 | 36.765 | 136 | 77 | 3 | 29 | 157 | 12 | 145 | 8.60e-16 | 74.3 |
| Msa1454420 | AT4G18020.10 | 36.765 | 136 | 77 | 3 | 29 | 157 | 12 | 145 | 8.60e-16 | 74.3 |
| Msa1454420 | AT4G18020.7 | 36.765 | 136 | 77 | 3 | 29 | 157 | 12 | 145 | 8.60e-16 | 74.3 |
| Msa1454420 | AT4G18020.3 | 36.765 | 136 | 77 | 3 | 29 | 157 | 12 | 145 | 8.98e-16 | 74.3 |
| Msa1454420 | AT4G18020.2 | 36.765 | 136 | 77 | 3 | 29 | 157 | 12 | 145 | 8.98e-16 | 74.3 |
| Msa1454420 | AT4G18020.1 | 36.765 | 136 | 77 | 3 | 29 | 157 | 12 | 145 | 8.98e-16 | 74.3 |
| Msa1454420 | AT4G18020.6 | 36.765 | 136 | 77 | 3 | 29 | 157 | 12 | 145 | 8.98e-16 | 74.3 |
| Msa1454420 | AT4G18020.9 | 36.765 | 136 | 77 | 3 | 29 | 157 | 12 | 145 | 8.98e-16 | 74.3 |
| Msa1454420 | AT1G67710.3 | 54.286 | 70 | 29 | 1 | 110 | 176 | 12 | 81 | 9.03e-16 | 74.3 |
| Msa1454420 | AT5G07210.1 | 32.061 | 131 | 78 | 3 | 35 | 156 | 16 | 144 | 1.37e-13 | 68.2 |
| Msa1454420 | AT1G68210.1 | 29.600 | 125 | 87 | 1 | 35 | 159 | 13 | 136 | 9.81e-13 | 65.9 |
Find 38 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGGTTCCGATCAATTTC+CGG | 0.285866 | tig0035167:+26857 | Msa1454420:CDS |
| TTTAAACTCTTAGAACATAT+TGG | 0.300849 | tig0035167:+27576 | Msa1454420:CDS |
| CCAAAGTACTTACTAATAAC+TGG | 0.319130 | tig0035167:-27615 | Msa1454420:intergenic |
| AGAACATATTGGATTGGAAA+TGG | 0.369734 | tig0035167:+27587 | Msa1454420:CDS |
| TTCAAAGCCTCAATACGAAC+AGG | 0.419602 | tig0035167:-27818 | Msa1454420:intergenic |
| TTGAGGCTTTGAAGAACATA+TGG | 0.437862 | tig0035167:+27811 | Msa1454420:CDS |
| ACTCTTAGAACATATTGGAT+TGG | 0.448527 | tig0035167:+27581 | Msa1454420:CDS |
| GATTAAACCTGTTCGTATTG+AGG | 0.449126 | tig0035167:+27794 | Msa1454420:CDS |
| AAATTGATCGGAACCTTCAC+CGG | 0.461498 | tig0035167:-26853 | Msa1454420:intergenic |
| TTCAAAGAGAACGCAAGAAT+CGG | 0.475865 | tig0035167:-26662 | Msa1454420:intergenic |
| AATCTAAGCAACAACGGAAA+AGG | 0.481027 | tig0035167:+26789 | Msa1454420:CDS |
| AGTTTAAATCCATCCATGTC+TGG | 0.492706 | tig0035167:-27561 | Msa1454420:intergenic |
| TGGAAAGATACGGAGCAGTC+GGG | 0.506488 | tig0035167:+27864 | Msa1454420:CDS |
| CTACTCAGAGAGAACAAGAA+TGG | 0.509140 | tig0035167:+27507 | Msa1454420:CDS |
| ACATATGGCAGCATGTGGTT+CGG | 0.513719 | tig0035167:+27826 | Msa1454420:CDS |
| TTGCGCACATGTCTTTATGA+AGG | 0.513753 | tig0035167:+26942 | Msa1454420:CDS |
| TGGTAAAAGTGTTGTTATGA+AGG | 0.536755 | tig0035167:+27743 | Msa1454420:CDS |
| ACTGCTACTACTATGAAATC+CGG | 0.552368 | tig0035167:+26834 | Msa1454420:CDS |
| GTGGAAAGATACGGAGCAGT+CGG | 0.552841 | tig0035167:+27863 | Msa1454420:CDS |
| AAAGAACGAGTGGAAAGATA+CGG | 0.569117 | tig0035167:+27854 | Msa1454420:CDS |
| CTCAAGAATCATAAGACACG+TGG | 0.569208 | tig0035167:-26913 | Msa1454420:intergenic |
| TAAACCCGCCGGAAATTGAT+CGG | 0.583017 | tig0035167:-26865 | Msa1454420:intergenic |
| GTAGTGATGTCTGCCGATGA+TGG | 0.594746 | tig0035167:+27723 | Msa1454420:intron |
| ACTACTATGAAATCCGGTGA+AGG | 0.600055 | tig0035167:+26840 | Msa1454420:CDS |
| GTGCATATGCCAGACATGGA+TGG | 0.605390 | tig0035167:+27552 | Msa1454420:CDS |
| AGTACTTACTAATAACTGGA+AGG | 0.615916 | tig0035167:-27611 | Msa1454420:intergenic |
| GGTAAAAGTGTTGTTATGAA+GGG | 0.618959 | tig0035167:+27744 | Msa1454420:CDS |
| GCAGTCGGGTAGTGCTGACG+AGG | 0.619983 | tig0035167:+27878 | Msa1454420:CDS |
| GGTTCCGATCAATTTCCGGC+GGG | 0.625110 | tig0035167:+26861 | Msa1454420:CDS |
| GAAGAACATATGGCAGCATG+TGG | 0.630309 | tig0035167:+27821 | Msa1454420:CDS |
| AGGTTCCGATCAATTTCCGG+CGG | 0.652193 | tig0035167:+26860 | Msa1454420:CDS |
| TGATGTGCATATGCCAGACA+TGG | 0.676897 | tig0035167:+27548 | Msa1454420:CDS |
| ACGAGAACTCGTAAACCCGC+CGG | 0.676939 | tig0035167:-26876 | Msa1454420:intergenic |
| CAGTCGGGTAGTGCTGACGA+GGG | 0.681841 | tig0035167:+27879 | Msa1454420:CDS |
| TCAAGAATCATAAGACACGT+GGG | 0.691685 | tig0035167:-26912 | Msa1454420:intergenic |
| GGGTTTACGAGTTCTCGTTG+TGG | 0.701370 | tig0035167:+26881 | Msa1454420:CDS |
| ATGATGAATCTAAGCAACAA+CGG | 0.705147 | tig0035167:+26783 | Msa1454420:CDS |
| GTTATGAAGGGTGTAACACA+TGG | 0.742807 | tig0035167:+27756 | Msa1454420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATGTTTTGTTTATTGTTT+TGG | + | tig0035167:26745-26764 | Msa1454420:five_prime_UTR | 20.0% |
| !!! | TTTTTGAATAGTTTGCATAT+GGG | - | tig0035167:27096-27115 | Msa1454420:intergenic | 20.0% |
| !!! | TTTTTTGAATAGTTTGCATA+TGG | - | tig0035167:27097-27116 | Msa1454420:intergenic | 20.0% |
| !! | TCAAAATGAAAATCAAAATC+TGG | - | tig0035167:27303-27322 | Msa1454420:intergenic | 20.0% |
| !!! | TTTAAAATACCATTGAAACA+TGG | + | tig0035167:27332-27351 | Msa1454420:intron | 20.0% |
| !! | TTTAAACTCTTAGAACATAT+TGG | + | tig0035167:27576-27595 | Msa1454420:CDS | 20.0% |
| !!! | TCATGTTTTGTTTATTGTTT+TGG | + | tig0035167:26745-26764 | Msa1454420:five_prime_UTR | 20.0% |
| !!! | TTTTTGAATAGTTTGCATAT+GGG | - | tig0035167:27096-27115 | Msa1454420:intergenic | 20.0% |
| !!! | TTTTTTGAATAGTTTGCATA+TGG | - | tig0035167:27097-27116 | Msa1454420:intergenic | 20.0% |
| !! | TCAAAATGAAAATCAAAATC+TGG | - | tig0035167:27303-27322 | Msa1454420:intergenic | 20.0% |
| !!! | TTTAAAATACCATTGAAACA+TGG | + | tig0035167:27332-27351 | Msa1454420:intron | 20.0% |
| !! | TTTAAACTCTTAGAACATAT+TGG | + | tig0035167:27576-27595 | Msa1454420:CDS | 20.0% |
| ATGATGAATCTAAGCAACAA+CGG | + | tig0035167:26783-26802 | Msa1454420:CDS | 30.0% | |
| CGCTTAATTACTTGATTAGT+TGG | + | tig0035167:27034-27053 | Msa1454420:intron | 30.0% | |
| !!! | GACCTTTTTTTCTTCTTCTT+TGG | + | tig0035167:27206-27225 | Msa1454420:intron | 30.0% |
| AGCCAAAGAAGAAGAAAAAA+AGG | - | tig0035167:27211-27230 | Msa1454420:intergenic | 30.0% | |
| !!! | TTTTTTTCTTCTTCTTTGGC+TGG | + | tig0035167:27210-27229 | Msa1454420:intron | 30.0% |
| ACTCTTAGAACATATTGGAT+TGG | + | tig0035167:27581-27600 | Msa1454420:CDS | 30.0% | |
| ! | AGAACATATTGGATTGGAAA+TGG | + | tig0035167:27587-27606 | Msa1454420:CDS | 30.0% |
| AGTACTTACTAATAACTGGA+AGG | - | tig0035167:27614-27633 | Msa1454420:intergenic | 30.0% | |
| ! | CCAAAGTACTTACTAATAAC+TGG | - | tig0035167:27618-27637 | Msa1454420:intergenic | 30.0% |
| CCAGTTATTAGTAAGTACTT+TGG | + | tig0035167:27615-27634 | Msa1454420:intron | 30.0% | |
| ! | AACAACACTTTTACCATCAT+CGG | - | tig0035167:27739-27758 | Msa1454420:intergenic | 30.0% |
| !! | TGGTAAAAGTGTTGTTATGA+AGG | + | tig0035167:27743-27762 | Msa1454420:CDS | 30.0% |
| !! | GGTAAAAGTGTTGTTATGAA+GGG | + | tig0035167:27744-27763 | Msa1454420:CDS | 30.0% |
| ATGATGAATCTAAGCAACAA+CGG | + | tig0035167:26783-26802 | Msa1454420:CDS | 30.0% | |
| CGCTTAATTACTTGATTAGT+TGG | + | tig0035167:27034-27053 | Msa1454420:intron | 30.0% | |
| !!! | GACCTTTTTTTCTTCTTCTT+TGG | + | tig0035167:27206-27225 | Msa1454420:intron | 30.0% |
| AGCCAAAGAAGAAGAAAAAA+AGG | - | tig0035167:27211-27230 | Msa1454420:intergenic | 30.0% | |
| !!! | TTTTTTTCTTCTTCTTTGGC+TGG | + | tig0035167:27210-27229 | Msa1454420:intron | 30.0% |
| ACTCTTAGAACATATTGGAT+TGG | + | tig0035167:27581-27600 | Msa1454420:CDS | 30.0% | |
| ! | AGAACATATTGGATTGGAAA+TGG | + | tig0035167:27587-27606 | Msa1454420:CDS | 30.0% |
| AGTACTTACTAATAACTGGA+AGG | - | tig0035167:27614-27633 | Msa1454420:intergenic | 30.0% | |
| ! | CCAAAGTACTTACTAATAAC+TGG | - | tig0035167:27618-27637 | Msa1454420:intergenic | 30.0% |
| CCAGTTATTAGTAAGTACTT+TGG | + | tig0035167:27615-27634 | Msa1454420:intron | 30.0% | |
| ! | AACAACACTTTTACCATCAT+CGG | - | tig0035167:27739-27758 | Msa1454420:intergenic | 30.0% |
| !! | TGGTAAAAGTGTTGTTATGA+AGG | + | tig0035167:27743-27762 | Msa1454420:CDS | 30.0% |
| !! | GGTAAAAGTGTTGTTATGAA+GGG | + | tig0035167:27744-27763 | Msa1454420:CDS | 30.0% |
| TTCAAAGAGAACGCAAGAAT+CGG | - | tig0035167:26665-26684 | None:intergenic | 35.0% | |
| AATCTAAGCAACAACGGAAA+AGG | + | tig0035167:26789-26808 | Msa1454420:CDS | 35.0% | |
| ACTGCTACTACTATGAAATC+CGG | + | tig0035167:26834-26853 | Msa1454420:CDS | 35.0% | |
| TCAAGAATCATAAGACACGT+GGG | - | tig0035167:26915-26934 | Msa1454420:intergenic | 35.0% | |
| AGCTCAAAACCATGTTTCAA+TGG | - | tig0035167:27344-27363 | Msa1454420:intergenic | 35.0% | |
| AGTTTAAATCCATCCATGTC+TGG | - | tig0035167:27564-27583 | Msa1454420:intergenic | 35.0% | |
| GATTAAACCTGTTCGTATTG+AGG | + | tig0035167:27794-27813 | Msa1454420:CDS | 35.0% | |
| !! | TTGAGGCTTTGAAGAACATA+TGG | + | tig0035167:27811-27830 | Msa1454420:CDS | 35.0% |
| AAAGAACGAGTGGAAAGATA+CGG | + | tig0035167:27854-27873 | Msa1454420:CDS | 35.0% | |
| TTCAAAGAGAACGCAAGAAT+CGG | - | tig0035167:26665-26684 | Msa1454420:intergenic | 35.0% | |
| AATCTAAGCAACAACGGAAA+AGG | + | tig0035167:26789-26808 | Msa1454420:CDS | 35.0% | |
| ACTGCTACTACTATGAAATC+CGG | + | tig0035167:26834-26853 | Msa1454420:CDS | 35.0% | |
| TCAAGAATCATAAGACACGT+GGG | - | tig0035167:26915-26934 | Msa1454420:intergenic | 35.0% | |
| AGCTCAAAACCATGTTTCAA+TGG | - | tig0035167:27344-27363 | Msa1454420:intergenic | 35.0% | |
| AGTTTAAATCCATCCATGTC+TGG | - | tig0035167:27564-27583 | Msa1454420:intergenic | 35.0% | |
| GATTAAACCTGTTCGTATTG+AGG | + | tig0035167:27794-27813 | Msa1454420:CDS | 35.0% | |
| !! | TTGAGGCTTTGAAGAACATA+TGG | + | tig0035167:27811-27830 | Msa1454420:CDS | 35.0% |
| AAAGAACGAGTGGAAAGATA+CGG | + | tig0035167:27854-27873 | Msa1454420:CDS | 35.0% | |
| ACTACTATGAAATCCGGTGA+AGG | + | tig0035167:26840-26859 | Msa1454420:CDS | 40.0% | |
| AAATTGATCGGAACCTTCAC+CGG | - | tig0035167:26856-26875 | Msa1454420:intergenic | 40.0% | |
| TGAAGGTTCCGATCAATTTC+CGG | + | tig0035167:26857-26876 | Msa1454420:CDS | 40.0% | |
| CTCAAGAATCATAAGACACG+TGG | - | tig0035167:26916-26935 | Msa1454420:intergenic | 40.0% | |
| TTGCGCACATGTCTTTATGA+AGG | + | tig0035167:26942-26961 | Msa1454420:CDS | 40.0% | |
| !!! | GAAACATGGTTTTGAGCTAC+TGG | + | tig0035167:27346-27365 | Msa1454420:intron | 40.0% |
| CTACTCAGAGAGAACAAGAA+TGG | + | tig0035167:27507-27526 | Msa1454420:CDS | 40.0% | |
| ! | GTTATGAAGGGTGTAACACA+TGG | + | tig0035167:27756-27775 | Msa1454420:CDS | 40.0% |
| TTCAAAGCCTCAATACGAAC+AGG | - | tig0035167:27804-27823 | Msa1454420:intergenic | 40.0% | |
| TTCGGAAGAAAAAGAACGAG+TGG | + | tig0035167:27844-27863 | Msa1454420:CDS | 40.0% | |
| ACTACTATGAAATCCGGTGA+AGG | + | tig0035167:26840-26859 | Msa1454420:CDS | 40.0% | |
| AAATTGATCGGAACCTTCAC+CGG | - | tig0035167:26856-26875 | Msa1454420:intergenic | 40.0% | |
| TGAAGGTTCCGATCAATTTC+CGG | + | tig0035167:26857-26876 | Msa1454420:CDS | 40.0% | |
| CTCAAGAATCATAAGACACG+TGG | - | tig0035167:26916-26935 | Msa1454420:intergenic | 40.0% | |
| TTGCGCACATGTCTTTATGA+AGG | + | tig0035167:26942-26961 | Msa1454420:CDS | 40.0% | |
| !!! | GAAACATGGTTTTGAGCTAC+TGG | + | tig0035167:27346-27365 | Msa1454420:intron | 40.0% |
| CTACTCAGAGAGAACAAGAA+TGG | + | tig0035167:27507-27526 | Msa1454420:CDS | 40.0% | |
| ! | GTTATGAAGGGTGTAACACA+TGG | + | tig0035167:27756-27775 | Msa1454420:CDS | 40.0% |
| TTCAAAGCCTCAATACGAAC+AGG | - | tig0035167:27804-27823 | Msa1454420:intergenic | 40.0% | |
| TTCGGAAGAAAAAGAACGAG+TGG | + | tig0035167:27844-27863 | Msa1454420:CDS | 40.0% | |
| TAAACCCGCCGGAAATTGAT+CGG | - | tig0035167:26868-26887 | Msa1454420:intergenic | 45.0% | |
| TGATGTGCATATGCCAGACA+TGG | + | tig0035167:27548-27567 | Msa1454420:CDS | 45.0% | |
| GAAGAACATATGGCAGCATG+TGG | + | tig0035167:27821-27840 | Msa1454420:CDS | 45.0% | |
| ACATATGGCAGCATGTGGTT+CGG | + | tig0035167:27826-27845 | Msa1454420:CDS | 45.0% | |
| TAAACCCGCCGGAAATTGAT+CGG | - | tig0035167:26868-26887 | Msa1454420:intergenic | 45.0% | |
| TGATGTGCATATGCCAGACA+TGG | + | tig0035167:27548-27567 | Msa1454420:CDS | 45.0% | |
| GAAGAACATATGGCAGCATG+TGG | + | tig0035167:27821-27840 | Msa1454420:CDS | 45.0% | |
| ACATATGGCAGCATGTGGTT+CGG | + | tig0035167:27826-27845 | Msa1454420:CDS | 45.0% | |
| AGGTTCCGATCAATTTCCGG+CGG | + | tig0035167:26860-26879 | Msa1454420:CDS | 50.0% | |
| GGGTTTACGAGTTCTCGTTG+TGG | + | tig0035167:26881-26900 | Msa1454420:CDS | 50.0% | |
| GTGCATATGCCAGACATGGA+TGG | + | tig0035167:27552-27571 | Msa1454420:CDS | 50.0% | |
| GTAGTGATGTCTGCCGATGA+TGG | + | tig0035167:27723-27742 | Msa1454420:intron | 50.0% | |
| GTGGAAAGATACGGAGCAGT+CGG | + | tig0035167:27863-27882 | Msa1454420:CDS | 50.0% | |
| TGGAAAGATACGGAGCAGTC+GGG | + | tig0035167:27864-27883 | Msa1454420:CDS | 50.0% | |
| AGGTTCCGATCAATTTCCGG+CGG | + | tig0035167:26860-26879 | Msa1454420:CDS | 50.0% | |
| GGGTTTACGAGTTCTCGTTG+TGG | + | tig0035167:26881-26900 | Msa1454420:CDS | 50.0% | |
| GTGCATATGCCAGACATGGA+TGG | + | tig0035167:27552-27571 | Msa1454420:CDS | 50.0% | |
| GTAGTGATGTCTGCCGATGA+TGG | + | tig0035167:27723-27742 | Msa1454420:intron | 50.0% | |
| GTGGAAAGATACGGAGCAGT+CGG | + | tig0035167:27863-27882 | Msa1454420:CDS | 50.0% | |
| TGGAAAGATACGGAGCAGTC+GGG | + | tig0035167:27864-27883 | Msa1454420:CDS | 50.0% | |
| GGTTCCGATCAATTTCCGGC+GGG | + | tig0035167:26861-26880 | Msa1454420:CDS | 55.0% | |
| ACGAGAACTCGTAAACCCGC+CGG | - | tig0035167:26879-26898 | Msa1454420:intergenic | 55.0% | |
| GGTTCCGATCAATTTCCGGC+GGG | + | tig0035167:26861-26880 | Msa1454420:CDS | 55.0% | |
| ACGAGAACTCGTAAACCCGC+CGG | - | tig0035167:26879-26898 | Msa1454420:intergenic | 55.0% | |
| !! | CAGTCGGGTAGTGCTGACGA+GGG | + | tig0035167:27879-27898 | Msa1454420:CDS | 60.0% |
| !! | CAGTCGGGTAGTGCTGACGA+GGG | + | tig0035167:27879-27898 | Msa1454420:CDS | 60.0% |
| !! | GCAGTCGGGTAGTGCTGACG+AGG | + | tig0035167:27878-27897 | Msa1454420:CDS | 65.0% |
| !! | GCAGTCGGGTAGTGCTGACG+AGG | + | tig0035167:27878-27897 | Msa1454420:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0035167 | gene | 26608 | 27920 | 26608 | ID=Msa1454420;Name=Msa1454420 |
| tig0035167 | mRNA | 26608 | 27920 | 26608 | ID=Msa1454420-mRNA-1;Parent=Msa1454420;Name=Msa1454420-mRNA-1;_AED=0.06;_eAED=0.06;_QI=175|1|0.66|1|1|1|3|0|176 |
| tig0035167 | exon | 26608 | 26963 | 26608 | ID=Msa1454420-mRNA-1:exon:19722;Parent=Msa1454420-mRNA-1 |
| tig0035167 | exon | 27472 | 27624 | 27472 | ID=Msa1454420-mRNA-1:exon:19723;Parent=Msa1454420-mRNA-1 |
| tig0035167 | exon | 27727 | 27920 | 27727 | ID=Msa1454420-mRNA-1:exon:19724;Parent=Msa1454420-mRNA-1 |
| tig0035167 | five_prime_UTR | 26608 | 26782 | 26608 | ID=Msa1454420-mRNA-1:five_prime_utr;Parent=Msa1454420-mRNA-1 |
| tig0035167 | CDS | 26783 | 26963 | 26783 | ID=Msa1454420-mRNA-1:cds;Parent=Msa1454420-mRNA-1 |
| tig0035167 | CDS | 27472 | 27624 | 27472 | ID=Msa1454420-mRNA-1:cds;Parent=Msa1454420-mRNA-1 |
| tig0035167 | CDS | 27727 | 27920 | 27727 | ID=Msa1454420-mRNA-1:cds;Parent=Msa1454420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
