AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1454980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1454980 MtrunA17_Chr8g0390341 97.143 315 9 0 1 315 1 315 0.0 639
Msa1454980 MtrunA17_Chr6g0486031 60.559 322 100 8 1 315 1 302 4.31e-122 356
Msa1454980 MtrunA17_Chr4g0051261 38.608 158 79 6 19 165 1 151 1.89e-21 92.4
Msa1454980 MtrunA17_Chr4g0040141 36.313 179 93 7 4 174 115 280 2.08e-21 94.7
Msa1454980 MtrunA17_Chr5g0396361 35.673 171 94 7 4 166 126 288 3.21e-21 94.0
Msa1454980 MtrunA17_Chr2g0317501 37.870 169 89 6 4 164 120 280 4.91e-21 93.6
Msa1454980 MtrunA17_Chr2g0293491 39.355 155 82 6 19 165 1 151 5.25e-21 90.9
Msa1454980 MtrunA17_Chr6g0483151 37.037 162 90 4 16 170 8 164 8.83e-21 92.0
Msa1454980 MtrunA17_Chr8g0385971 36.747 166 88 6 22 179 90 246 8.94e-21 92.8
Msa1454980 MtrunA17_Chr1g0166101 36.306 157 80 4 18 162 20 168 1.16e-20 91.7
Msa1454980 MtrunA17_Chr2g0324461 36.047 172 94 6 4 167 127 290 1.80e-20 92.0
Msa1454980 MtrunA17_Chr1g0187371 34.161 161 94 3 22 170 18 178 5.21e-20 88.6
Msa1454980 MtrunA17_Chr6g0453711 36.424 151 84 5 22 164 110 256 9.73e-20 89.7
Msa1454980 MtrunA17_Chr3g0099951 35.220 159 89 4 21 170 13 166 1.59e-19 88.2
Msa1454980 MtrunA17_Chr3g0131861 37.086 151 83 4 22 164 97 243 3.29e-19 88.2
Msa1454980 MtrunA17_Chr4g0002001 32.759 174 94 6 19 170 1 173 3.42e-19 86.3
Msa1454980 MtrunA17_Chr3g0093571 37.349 166 78 6 22 165 25 186 5.45e-19 87.4
Msa1454980 MtrunA17_Chr8g0383451 39.355 155 81 6 25 170 1 151 6.68e-19 86.7
Msa1454980 MtrunA17_Chr2g0286421 37.748 151 82 4 22 164 102 248 7.53e-19 87.0
Msa1454980 MtrunA17_Chr3g0093391 36.145 166 80 6 22 165 23 184 1.85e-18 85.9
Msa1454980 MtrunA17_Chr1g0191221 35.542 166 90 5 22 179 122 278 2.13e-18 85.5
Msa1454980 MtrunA17_Chr4g0061141 33.775 151 88 4 22 164 105 251 7.38e-18 84.3
Msa1454980 MtrunA17_Chr1g0201571 35.849 159 86 5 18 164 118 272 1.09e-17 83.6
Msa1454980 MtrunA17_Chr8g0358921 37.736 159 86 6 23 170 48 204 1.57e-17 82.0
Msa1454980 MtrunA17_Chr1g0188031 32.468 154 91 3 18 162 16 165 1.75e-17 82.4
Msa1454980 MtrunA17_Chr4g0066691 32.530 166 95 5 22 179 104 260 4.02e-17 81.6
Msa1454980 MtrunA17_Chr7g0218071 31.818 154 93 4 22 167 120 269 1.13e-16 80.5
Msa1454980 MtrunA17_Chr4g0013131 32.692 156 89 6 16 162 6 154 1.26e-16 80.1
Msa1454980 MtrunA17_Chr7g0273601 34.940 166 91 5 22 179 107 263 1.26e-16 80.5
Msa1454980 MtrunA17_Chr4g0008561 33.889 180 96 7 4 172 7 174 2.61e-16 79.7
Msa1454980 MtrunA17_Chr1g0193081 32.903 155 96 6 22 169 75 228 9.26e-16 77.4
Msa1454980 MtrunA17_Chr8g0339221 32.667 150 89 5 22 165 4 147 9.89e-16 77.4
Msa1454980 MtrunA17_Chr5g0409421 31.373 153 93 6 19 165 1 147 1.12e-15 77.4
Msa1454980 MtrunA17_Chr1g0205421 33.766 154 86 5 18 162 8 154 1.14e-15 77.4
Msa1454980 MtrunA17_Chr3g0114511 33.117 154 85 5 18 162 28 172 1.27e-15 77.0
Msa1454980 MtrunA17_Chr8g0350311 30.573 157 100 6 22 171 139 293 3.92e-15 75.9
Msa1454980 MtrunA17_Chr1g0170551 32.051 156 93 4 19 167 4 153 3.96e-15 76.3
Msa1454980 MtrunA17_Chr1g0194201 32.903 155 96 6 22 169 75 228 4.03e-15 75.5
Msa1454980 MtrunA17_Chr8g0345801 33.333 165 93 6 14 167 7 165 4.80e-15 73.9
Msa1454980 MtrunA17_Chr8g0353621 30.464 151 94 4 19 162 7 153 4.92e-15 73.9
Msa1454980 MtrunA17_Chr5g0424251 35.000 180 81 8 22 168 331 507 6.88e-15 75.1
Msa1454980 MtrunA17_Chr4g0000481 40.940 149 73 6 25 167 87 226 1.22e-14 73.9
Msa1454980 MtrunA17_Chr2g0284091 31.613 155 98 6 22 169 40 193 1.33e-14 73.6
Msa1454980 MtrunA17_Chr4g0057791 30.058 173 107 5 8 170 204 372 2.03e-14 73.6
Msa1454980 MtrunA17_Chr1g0205931 30.061 163 94 7 21 169 54 210 3.85e-14 73.2
Msa1454980 MtrunA17_Chr2g0284011 28.931 159 97 4 18 167 8 159 4.08e-14 72.4
Msa1454980 MtrunA17_Chr3g0130781 31.579 171 102 4 15 170 11 181 5.86e-14 72.0
Msa1454980 MtrunA17_Chr5g0432491 30.380 158 95 5 18 166 19 170 5.93e-14 72.0
Msa1454980 MtrunA17_Chr7g0244521 30.769 156 92 6 16 162 6 154 6.64e-14 72.0
Msa1454980 MtrunA17_Chr8g0377071 31.875 160 97 4 19 170 382 537 6.79e-14 72.4
Msa1454980 MtrunA17_Chr5g0441011 34.416 154 84 6 19 162 10 156 9.70e-14 71.2
Msa1454980 MtrunA17_Chr4g0038091 33.544 158 91 5 21 169 19 171 1.12e-13 72.0
Msa1454980 MtrunA17_Chr3g0122781 32.903 155 92 5 19 165 413 563 1.14e-13 71.6
Msa1454980 MtrunA17_Chr3g0115051 34.444 180 82 8 22 168 363 539 1.82e-13 70.9
Msa1454980 MtrunA17_Chr8g0378831 33.742 163 92 4 14 165 24 181 2.09e-13 70.1
Msa1454980 MtrunA17_Chr2g0304111 29.605 152 92 6 20 162 21 166 2.27e-13 70.5
Msa1454980 MtrunA17_Chr1g0190831 28.662 157 101 4 19 167 1 154 3.36e-13 70.1
Msa1454980 MtrunA17_Chr4g0038501 31.579 171 102 6 9 169 6 171 3.57e-13 70.5
Msa1454980 MtrunA17_Chr8g0351491 30.263 152 93 5 19 162 13 159 4.49e-13 68.2
Msa1454980 MtrunA17_Chr4g0001331 29.114 158 98 5 13 162 11 162 4.49e-13 69.3
Msa1454980 MtrunA17_Chr7g0260191 28.025 157 102 4 19 167 1 154 6.40e-13 69.3
Msa1454980 MtrunA17_Chr2g0286501 31.818 154 98 4 18 169 45 193 6.47e-13 69.7
Msa1454980 MtrunA17_Chr3g0141871 32.927 164 94 4 13 165 23 181 6.55e-13 68.6
Msa1454980 MtrunA17_Chr7g0246591 27.673 159 108 5 19 171 138 295 7.08e-13 68.9
Msa1454980 MtrunA17_Chr7g0272841 29.448 163 95 7 21 169 67 223 7.72e-13 68.9
Msa1454980 MtrunA17_Chr6g0482681 31.013 158 93 4 20 166 87 239 9.86e-13 68.6
Msa1454980 MtrunA17_Chr5g0443351 30.000 170 96 5 21 179 21 178 1.05e-12 68.6
Msa1454980 MtrunA17_Chr7g0258051 28.395 162 103 4 15 167 9 166 1.12e-12 68.6
Msa1454980 MtrunA17_Chr5g0419441 32.544 169 84 6 15 167 232 386 1.61e-12 68.2
Msa1454980 MtrunA17_Chr2g0333821 27.108 166 91 6 13 162 5 156 2.01e-12 67.4
Msa1454980 MtrunA17_Chr7g0274941 27.950 161 100 4 21 171 15 169 2.19e-12 66.6
Msa1454980 MtrunA17_Chr8g0392811 30.380 158 94 6 20 166 115 267 3.03e-12 67.0
Msa1454980 MtrunA17_Chr3g0107051 30.061 163 92 5 16 166 15 167 3.14e-12 67.0
Msa1454980 MtrunA17_Chr8g0346071 30.719 153 91 6 19 162 14 160 3.23e-12 66.6
Msa1454980 MtrunA17_Chr8g0346081 30.263 152 93 6 19 162 14 160 3.39e-12 66.6
Msa1454980 MtrunA17_Chr4g0063881 28.947 152 95 4 19 162 8 154 3.49e-12 66.6
Msa1454980 MtrunA17_Chr1g0173921 27.564 156 104 4 19 167 1 154 3.59e-12 67.0
Msa1454980 MtrunA17_Chr4g0074111 27.632 152 94 4 20 162 16 160 6.02e-12 65.9
Msa1454980 MtrunA17_Chr3g0096631 30.058 173 92 6 21 179 24 181 7.25e-12 65.9
Msa1454980 MtrunA17_Chr5g0428031 30.519 154 90 6 19 162 6 152 7.45e-12 65.9
Msa1454980 MtrunA17_Chr3g0091281 30.625 160 81 7 18 161 8 153 8.02e-12 64.3
Msa1454980 MtrunA17_Chr2g0284031 28.395 162 100 6 14 166 23 177 9.34e-12 65.5
Msa1454980 MtrunA17_Chr4g0051961 34.437 151 86 5 28 167 876 1024 9.82e-12 65.9
Msa1454980 MtrunA17_Chr8g0379091 28.025 157 99 6 18 166 22 172 9.95e-12 65.5
Msa1454980 MtrunA17_Chr3g0091421 29.814 161 83 6 18 162 8 154 1.08e-11 63.9
Msa1454980 MtrunA17_Chr4g0030151 33.918 171 90 6 17 172 33 195 1.29e-11 64.7
Msa1454980 MtrunA17_Chr2g0287271 30.409 171 96 6 20 179 23 181 1.69e-11 64.7
Msa1454980 MtrunA17_Chr8g0387401 31.548 168 98 5 17 172 46 208 1.77e-11 64.3
Msa1454980 MtrunA17_Chr4g0045841 33.136 169 94 6 17 172 49 211 1.91e-11 64.3
Msa1454980 MtrunA17_Chr4g0065851 30.409 171 96 5 20 179 23 181 3.03e-11 63.9
Msa1454980 MtrunA17_Chr2g0314321 28.824 170 98 5 21 179 24 181 3.07e-11 64.3
Msa1454980 MtrunA17_Chr5g0397261 30.952 168 99 6 17 172 35 197 4.01e-11 63.2
Msa1454980 MtrunA17_Chr5g0429431 30.488 164 95 5 20 171 127 283 4.49e-11 63.5
Msa1454980 MtrunA17_Chr1g0185221 28.025 157 102 4 19 167 1 154 4.50e-11 63.5
Msa1454980 MtrunA17_Chr6g0468751 27.673 159 100 5 18 167 15 167 7.93e-11 62.8
Msa1454980 MtrunA17_Chr4g0029241 29.814 161 94 4 16 161 111 267 8.00e-11 62.4
Msa1454980 MtrunA17_Chr4g0069301 38.235 102 58 4 61 162 73 169 9.14e-11 62.4
Msa1454980 MtrunA17_Chr6g0453681 27.673 159 100 5 18 167 15 167 9.28e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1454980 AT4G28980.3 61.950 318 113 4 5 315 4 320 6.04e-134 389
Msa1454980 AT4G28980.1 61.950 318 113 4 5 315 4 320 6.04e-134 389
Msa1454980 AT4G28980.2 61.950 318 113 4 5 315 4 320 6.04e-134 389
Msa1454980 AT1G66750.1 37.037 162 90 4 16 170 7 163 4.64e-22 95.1
Msa1454980 AT1G53050.2 35.870 184 97 7 4 179 120 290 2.56e-21 94.7
Msa1454980 AT1G53050.1 35.870 184 97 7 4 179 120 290 2.56e-21 94.7
Msa1454980 AT1G73690.1 35.583 163 93 4 16 171 5 162 5.84e-21 92.8
Msa1454980 AT5G50860.2 37.748 151 82 4 22 164 114 260 1.48e-20 92.4
Msa1454980 AT5G50860.1 37.748 151 82 4 22 164 114 260 1.61e-20 92.4
Msa1454980 AT2G38620.3 34.682 173 92 5 19 170 1 173 1.62e-20 89.4
Msa1454980 AT2G38620.1 34.682 173 92 5 19 170 1 173 1.62e-20 89.4
Msa1454980 AT4G10010.2 36.257 171 93 7 4 166 142 304 2.94e-20 91.7
Msa1454980 AT2G38620.2 34.682 173 92 5 19 170 1 173 3.68e-20 89.4
Msa1454980 AT5G39420.1 36.364 154 86 4 22 167 105 254 4.02e-20 91.3
Msa1454980 AT1G33770.1 36.095 169 92 7 4 164 127 287 5.07e-20 90.9
Msa1454980 AT1G71530.1 37.870 169 89 6 4 164 133 293 5.22e-20 90.9
Msa1454980 AT1G20930.1 33.540 161 95 3 22 170 16 176 7.03e-20 88.6
Msa1454980 AT1G71530.4 36.686 169 91 5 4 164 133 293 8.30e-20 89.0
Msa1454980 AT1G71530.2 37.870 169 89 6 4 164 133 293 8.93e-20 89.7
Msa1454980 AT1G71530.3 36.686 169 91 5 4 164 133 293 1.10e-19 89.4
Msa1454980 AT5G63370.9 35.185 162 90 4 16 165 157 315 1.11e-19 89.4
Msa1454980 AT1G18040.1 34.356 163 95 4 16 171 6 163 1.11e-19 89.0
Msa1454980 AT1G76540.1 34.161 161 94 4 22 170 14 174 1.57e-19 87.8
Msa1454980 AT5G63370.2 35.185 162 90 4 16 165 157 315 1.59e-19 89.0
Msa1454980 AT5G63370.3 35.185 162 90 4 16 165 157 315 1.59e-19 89.0
Msa1454980 AT5G10270.1 37.349 166 78 6 22 165 26 187 1.91e-19 89.0
Msa1454980 AT5G44290.6 36.686 169 91 6 4 164 123 283 1.91e-19 89.4
Msa1454980 AT5G63370.5 35.185 162 90 4 16 165 291 449 2.07e-19 89.0
Msa1454980 AT5G63370.10 35.185 162 90 4 16 165 291 449 2.07e-19 89.0
Msa1454980 AT5G44290.2 36.686 169 91 6 4 164 123 283 2.19e-19 89.0
Msa1454980 AT5G44290.5 36.686 169 91 6 4 164 123 283 2.19e-19 89.0
Msa1454980 AT5G44290.4 36.686 169 91 6 4 164 123 283 2.19e-19 89.0
Msa1454980 AT5G44290.1 36.686 169 91 6 4 164 123 283 2.19e-19 89.0
Msa1454980 AT5G44290.3 36.686 169 91 6 4 164 123 283 2.19e-19 89.0
Msa1454980 AT5G63370.7 35.185 162 90 4 16 165 291 449 2.45e-19 89.0
Msa1454980 AT5G63370.8 35.185 162 90 4 16 165 291 449 2.45e-19 89.0
Msa1454980 AT5G63370.4 35.185 162 90 4 16 165 291 449 2.45e-19 89.0
Msa1454980 AT5G63370.6 35.185 162 90 4 16 165 291 449 2.45e-19 89.0
Msa1454980 AT5G63370.1 35.185 162 90 4 16 165 291 449 2.45e-19 89.0
Msa1454980 AT5G44290.7 36.686 169 91 6 4 164 123 283 2.64e-19 88.6
Msa1454980 AT5G64960.1 37.349 166 78 6 22 165 26 187 3.49e-19 88.2
Msa1454980 AT1G18670.2 34.911 169 94 6 4 164 117 277 7.33e-19 87.4
Msa1454980 AT1G18670.3 34.911 169 94 6 4 164 117 277 8.00e-19 87.4
Msa1454980 AT1G18670.1 34.911 169 94 6 4 164 117 277 8.88e-19 87.4
Msa1454980 AT1G03740.1 37.748 151 82 5 22 164 213 359 1.77e-18 86.7
Msa1454980 AT1G03740.2 37.748 151 82 5 22 164 213 359 1.79e-18 86.3
Msa1454980 AT3G48750.1 37.908 153 83 5 21 165 3 151 2.55e-18 84.0
Msa1454980 AT1G74330.3 34.911 169 94 6 4 164 107 267 2.69e-18 85.9
Msa1454980 AT1G74330.2 34.911 169 94 6 4 164 107 267 2.91e-18 85.9
Msa1454980 AT1G74330.1 34.911 169 94 6 4 164 107 267 3.15e-18 85.9
Msa1454980 AT1G54610.1 35.542 166 90 5 22 179 118 274 3.49e-18 85.5
Msa1454980 AT1G54610.3 35.542 166 90 5 22 179 118 274 3.49e-18 85.5
Msa1454980 AT1G54610.2 35.542 166 90 5 22 179 118 274 3.49e-18 85.5
Msa1454980 AT4G22940.2 37.500 152 82 4 22 164 103 250 8.39e-18 84.3
Msa1454980 AT4G14580.1 34.356 163 83 5 14 162 13 165 1.17e-17 83.6
Msa1454980 AT4G22940.1 35.882 170 92 5 4 164 89 250 1.21e-17 83.6
Msa1454980 AT3G01085.3 33.766 154 90 4 22 167 115 264 1.75e-17 83.6
Msa1454980 AT3G01085.1 33.766 154 90 4 22 167 115 264 1.78e-17 83.6
Msa1454980 AT3G01085.2 33.766 154 90 4 22 167 115 264 1.78e-17 83.6
Msa1454980 AT3G54180.1 33.918 171 94 5 19 170 1 171 2.37e-17 81.3
Msa1454980 AT3G05050.3 37.662 154 78 6 22 164 138 284 3.61e-17 82.4
Msa1454980 AT3G05050.2 37.662 154 78 6 22 164 138 284 3.61e-17 82.4
Msa1454980 AT3G05050.1 37.662 154 78 6 22 164 138 284 3.61e-17 82.4
Msa1454980 AT3G23000.1 31.410 156 89 4 18 162 21 169 5.49e-17 81.6
Msa1454980 AT4G13020.2 31.169 154 94 5 18 165 8 155 6.52e-16 78.2
Msa1454980 AT4G13020.3 31.169 154 94 5 18 165 8 155 6.54e-16 78.2
Msa1454980 AT4G13020.7 31.373 153 93 5 19 165 1 147 1.58e-15 76.6
Msa1454980 AT4G13020.4 31.373 153 93 5 19 165 1 147 1.64e-15 77.0
Msa1454980 AT4G13020.1 31.373 153 93 5 19 165 1 147 1.76e-15 77.0
Msa1454980 AT4G13020.6 31.373 153 93 5 19 165 1 147 1.92e-15 76.6
Msa1454980 AT3G61960.1 34.969 163 89 6 16 167 4 160 1.93e-15 77.4
Msa1454980 AT3G61960.2 34.969 163 89 6 16 167 4 160 2.00e-15 77.0
Msa1454980 AT3G05840.2 32.903 155 96 6 22 169 73 226 3.06e-15 76.3
Msa1454980 AT3G05840.1 32.903 155 96 6 22 169 73 226 3.06e-15 76.3
Msa1454980 AT5G26751.1 32.903 155 96 6 22 169 69 222 3.06e-15 76.3
Msa1454980 AT4G19110.2 31.126 151 92 6 21 165 3 147 6.16e-15 75.5
Msa1454980 AT1G50240.3 33.987 153 88 4 22 167 6 152 6.20e-15 76.3
Msa1454980 AT1G50240.2 33.987 153 88 4 22 167 6 152 6.20e-15 76.3
Msa1454980 AT4G19110.1 31.126 151 92 6 21 165 3 147 6.53e-15 75.5
Msa1454980 AT3G21220.2 37.975 158 81 5 19 169 67 214 9.33e-15 74.3
Msa1454980 AT3G21220.1 37.975 158 81 5 19 169 67 214 9.33e-15 74.3
Msa1454980 AT3G53930.1 35.928 167 90 7 17 172 15 175 9.78e-15 75.1
Msa1454980 AT3G53930.2 35.928 167 90 7 17 172 15 175 1.12e-14 75.1
Msa1454980 AT4G18710.1 30.968 155 99 5 22 169 40 193 1.22e-14 74.3
Msa1454980 AT5G45430.2 28.758 153 97 5 19 165 1 147 1.27e-14 74.7
Msa1454980 AT5G45430.1 28.758 153 97 5 19 165 1 147 1.48e-14 74.3
Msa1454980 AT4G18710.2 30.968 155 99 5 22 169 34 187 1.95e-14 72.8
Msa1454980 AT5G64960.2 39.837 123 55 4 58 165 16 134 3.34e-14 73.2
Msa1454980 AT1G67580.1 30.625 160 99 4 19 170 403 558 3.36e-14 73.6
Msa1454980 AT1G67580.2 30.625 160 99 4 19 170 403 558 3.36e-14 73.6
Msa1454980 AT1G59580.2 28.516 256 148 7 13 238 23 273 3.44e-14 72.8
Msa1454980 AT1G59580.1 28.516 256 148 7 13 238 23 273 3.44e-14 72.8
Msa1454980 AT2G25090.1 29.697 165 100 5 18 172 11 169 3.50e-14 73.2
Msa1454980 AT5G45820.1 30.323 155 90 5 18 162 8 154 4.32e-14 72.8
Msa1454980 AT5G01810.1 30.573 157 91 5 16 162 6 154 4.60e-14 72.8
Msa1454980 AT5G01810.2 30.573 157 91 5 16 162 6 154 4.60e-14 72.8
Msa1454980 AT1G09600.1 35.762 151 85 4 22 164 163 309 5.02e-14 73.2
Msa1454980 AT2G26980.1 33.766 154 85 6 19 162 11 157 5.18e-14 72.4
Msa1454980 AT5G25110.1 28.387 155 93 5 18 162 39 185 5.90e-14 72.8
Msa1454980 AT3G13530.1 31.429 175 106 5 4 169 2 171 6.01e-14 73.2
Msa1454980 AT2G26980.3 33.766 154 85 6 19 162 11 157 6.22e-14 72.4
Msa1454980 AT1G57700.1 36.913 149 82 5 22 162 146 290 6.64e-14 72.8
Msa1454980 AT5G63610.1 30.178 169 105 4 15 170 18 186 6.74e-14 72.4
Msa1454980 AT2G26980.4 33.766 154 85 6 19 162 21 167 7.12e-14 72.4
Msa1454980 AT5G01810.3 30.573 157 91 5 16 162 6 154 7.32e-14 72.0
Msa1454980 AT2G26980.5 33.766 154 85 6 19 162 11 157 8.56e-14 72.0
Msa1454980 AT3G07980.1 30.726 179 110 5 4 173 2 175 8.91e-14 72.4
Msa1454980 AT3G07980.2 30.726 179 110 5 4 173 2 175 9.04e-14 72.4
Msa1454980 AT1G51660.1 38.562 153 71 6 27 169 84 223 9.51e-14 71.6
Msa1454980 AT2G37840.1 34.731 167 92 7 17 172 7 167 9.91e-14 72.4
Msa1454980 AT2G26980.2 33.766 154 85 6 19 162 11 157 1.04e-13 70.5
Msa1454980 AT4G13020.5 30.061 163 91 6 19 165 1 156 1.11e-13 71.6
Msa1454980 AT4G13020.8 30.061 163 91 6 19 165 1 156 1.14e-13 71.2
Msa1454980 AT2G18170.1 32.044 181 103 5 1 165 5 181 1.56e-13 70.9
Msa1454980 AT4G36450.1 33.735 166 90 5 13 165 23 181 2.84e-13 70.1
Msa1454980 AT3G63280.2 29.299 157 100 4 19 167 1 154 4.03e-13 70.1
Msa1454980 AT3G63280.3 29.299 157 100 4 19 167 1 154 4.03e-13 70.1
Msa1454980 AT3G63280.1 29.299 157 100 4 19 167 1 154 4.03e-13 70.1
Msa1454980 AT1G10210.2 33.742 163 94 5 13 165 23 181 4.30e-13 69.7
Msa1454980 AT1G10210.3 33.742 163 94 5 13 165 23 181 4.30e-13 69.7
Msa1454980 AT1G10210.1 33.742 163 94 5 13 165 23 181 4.30e-13 69.7
Msa1454980 AT1G06390.2 29.677 155 101 5 22 169 70 223 4.37e-13 69.7
Msa1454980 AT1G06390.1 29.677 155 101 5 22 169 70 223 4.37e-13 69.7
Msa1454980 AT3G63280.4 29.299 157 100 4 19 167 55 208 5.63e-13 69.7
Msa1454980 AT1G30270.1 29.870 154 91 6 19 162 28 174 7.03e-13 69.3
Msa1454980 AT1G30270.2 29.870 154 91 6 19 162 28 174 7.28e-13 69.3
Msa1454980 AT1G57870.1 30.201 149 96 6 28 169 88 235 8.25e-13 68.9
Msa1454980 AT1G57870.4 30.201 149 96 6 28 169 88 235 8.25e-13 68.9
Msa1454980 AT1G57870.2 30.201 149 96 6 28 169 88 235 8.25e-13 68.9
Msa1454980 AT5G10930.1 29.747 158 94 5 15 162 5 155 8.27e-13 68.9
Msa1454980 AT1G57870.3 30.201 149 96 6 28 169 88 235 9.37e-13 68.9
Msa1454980 AT4G10010.1 39.252 107 60 3 61 166 22 124 1.25e-12 68.6
Msa1454980 AT3G18040.4 31.013 158 93 4 20 166 130 282 1.48e-12 68.6
Msa1454980 AT3G01090.3 29.560 159 97 5 18 167 15 167 1.49e-12 68.6
Msa1454980 AT3G01090.1 29.560 159 97 5 18 167 15 167 1.49e-12 68.6
Msa1454980 AT2G45490.2 28.994 169 100 5 2 162 9 165 1.51e-12 67.0
Msa1454980 AT3G18040.3 31.013 158 93 4 20 166 130 282 1.57e-12 68.6
Msa1454980 AT3G01090.2 29.560 159 97 5 18 167 38 190 1.58e-12 68.6
Msa1454980 AT3G18040.1 31.013 158 93 4 20 166 21 173 1.61e-12 68.2
Msa1454980 AT5G58380.1 31.250 160 86 6 16 162 6 154 1.77e-12 68.2
Msa1454980 AT3G18040.5 31.013 158 93 4 20 166 16 168 1.97e-12 68.2
Msa1454980 AT3G20860.1 28.846 156 95 6 22 167 4 153 2.07e-12 67.8
Msa1454980 AT1G09000.1 29.487 156 90 6 28 169 75 224 2.51e-12 67.8
Msa1454980 AT1G09000.2 29.487 156 90 6 28 169 75 224 2.76e-12 67.8
Msa1454980 AT5G39440.1 28.931 159 98 5 18 167 15 167 3.04e-12 67.4
Msa1454980 AT1G77720.1 32.227 211 99 10 22 199 400 599 3.17e-12 67.8
Msa1454980 AT2G45490.1 28.994 169 100 5 2 162 9 165 3.26e-12 66.2
Msa1454980 AT3G29160.3 27.673 159 100 5 18 167 16 168 3.87e-12 66.6
Msa1454980 AT1G18150.3 29.936 157 94 5 21 166 103 254 4.82e-12 67.0
Msa1454980 AT1G18150.2 29.936 157 94 5 21 166 103 254 4.82e-12 67.0
Msa1454980 AT1G18150.1 29.936 157 94 5 21 166 103 254 4.82e-12 67.0
Msa1454980 AT4G18700.1 29.114 158 96 6 18 166 22 172 5.08e-12 66.6
Msa1454980 AT3G29160.1 27.439 164 104 5 18 172 16 173 5.29e-12 66.6
Msa1454980 AT3G29160.2 27.439 164 104 5 18 172 16 173 5.29e-12 66.6
Msa1454980 AT1G69220.1 30.994 171 86 6 14 167 241 396 5.92e-12 67.0
Msa1454980 AT3G06030.1 29.878 164 93 8 21 169 67 223 6.12e-12 66.6
Msa1454980 AT1G54960.1 28.221 163 97 6 21 169 67 223 6.83e-12 66.6
Msa1454980 AT1G54960.2 28.221 163 97 6 21 169 67 223 6.83e-12 66.6
Msa1454980 AT1G30640.2 28.221 163 104 5 22 176 120 277 7.69e-12 66.2
Msa1454980 AT1G30640.1 28.221 163 104 5 22 176 120 277 7.69e-12 66.2
Msa1454980 AT2G17700.1 23.656 186 104 4 3 171 272 436 9.08e-12 66.2
Msa1454980 AT1G30640.3 28.221 163 104 5 22 176 27 184 9.33e-12 65.9
Msa1454980 AT2G30360.1 29.032 155 94 5 18 162 17 165 9.53e-12 65.9
Msa1454980 AT2G43790.1 33.136 169 94 7 17 172 57 219 1.28e-11 65.5
Msa1454980 AT1G70430.1 26.286 175 113 6 4 171 3 168 1.51e-11 65.5
Msa1454980 AT1G73670.1 30.573 157 93 5 21 166 89 240 1.67e-11 65.5
Msa1454980 AT1G70430.4 26.286 175 113 6 4 171 3 168 1.75e-11 65.5
Msa1454980 AT2G42880.2 30.000 170 96 5 21 179 24 181 1.81e-11 65.1
Msa1454980 AT1G70430.3 26.286 175 113 6 4 171 3 168 1.88e-11 65.1
Msa1454980 AT5G45810.1 29.114 158 96 6 18 166 24 174 1.94e-11 65.1
Msa1454980 AT5G19010.1 29.825 171 97 5 20 179 23 181 2.45e-11 64.7
Msa1454980 AT2G25880.4 30.588 170 88 7 6 162 29 181 2.55e-11 63.9
Msa1454980 AT4G24400.2 30.065 153 92 6 19 162 6 152 2.66e-11 64.3
Msa1454980 AT4G32830.1 31.210 157 85 6 19 162 28 174 2.69e-11 63.5
Msa1454980 AT2G25880.1 30.588 170 88 7 6 162 16 168 2.74e-11 63.5
Msa1454980 AT2G42880.1 31.214 173 90 7 21 179 24 181 2.86e-11 64.7
Msa1454980 AT5G57630.1 29.114 158 94 5 19 166 9 158 3.08e-11 64.3
Msa1454980 AT5G57630.2 29.114 158 94 5 19 166 9 158 3.32e-11 63.9
Msa1454980 AT2G25880.3 30.588 170 88 7 6 162 77 229 3.54e-11 63.9
Msa1454980 AT4G24400.1 30.065 153 92 6 19 162 6 152 3.79e-11 63.9
Msa1454980 AT3G06230.1 28.947 152 98 4 19 168 50 193 4.46e-11 63.2
Msa1454980 AT1G54510.4 27.389 157 103 4 19 167 1 154 5.13e-11 63.9
Msa1454980 AT1G54510.2 27.389 157 103 4 19 167 1 154 5.13e-11 63.9
Msa1454980 AT1G54510.1 27.389 157 103 4 19 167 1 154 5.13e-11 63.9
Msa1454980 AT1G54510.3 27.389 157 103 4 19 167 1 154 5.13e-11 63.9
Msa1454980 AT1G66880.1 30.822 146 93 4 28 167 973 1116 5.29e-11 64.3
Msa1454980 AT1G01140.3 28.758 153 94 6 19 162 16 162 5.82e-11 63.5
Msa1454980 AT1G01140.1 28.758 153 94 6 19 162 16 162 6.05e-11 63.5
Msa1454980 AT4G01370.1 32.143 168 97 6 17 172 37 199 6.19e-11 63.2
Msa1454980 AT1G01140.2 28.758 153 94 6 19 162 16 162 6.71e-11 63.2
Msa1454980 AT1G66880.2 31.507 146 92 5 28 167 594 737 7.23e-11 63.5
Msa1454980 AT1G53510.1 26.882 186 113 6 5 179 8 181 7.46e-11 63.5
Msa1454980 AT1G66880.3 31.507 146 92 5 28 167 352 495 7.62e-11 63.5
Msa1454980 AT1G49180.1 45.098 102 48 5 73 171 64 160 8.34e-11 62.8
Msa1454980 AT4G11330.1 34.667 150 80 5 28 165 49 192 9.79e-11 62.4

Find 74 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGGCTCCTGAATTGCTTTA+TGG 0.132343 tig0035556:+25935 Msa1454980:CDS
GTTCTCAAATTGGCTGATTT+TGG 0.184070 tig0035556:+25116 Msa1454980:CDS
CTTTATGGATCTGCAAATTA+TGG 0.204735 tig0035556:+25950 Msa1454980:CDS
TGACTCTGGTGTTCTCAAAT+TGG 0.226183 tig0035556:+25106 Msa1454980:CDS
ACTGACAACTTGAGCCATTT+AGG 0.236326 tig0035556:+25659 Msa1454980:CDS
GTGTTGGAACTCGCTGGTTC+CGG 0.269595 tig0035556:+25915 Msa1454980:CDS
GCAGATCCATAAAGCAATTC+AGG 0.295134 tig0035556:-25960 Msa1454980:intergenic
TGTTGGAACTCGCTGGTTCC+GGG 0.312619 tig0035556:+25916 Msa1454980:CDS
TGAGTACCTTACCACTGATT+TGG 0.341914 tig0035556:+24932 Msa1454980:CDS
TTTGCAACGCTTCGATTTCT+CGG 0.342916 tig0035556:-24833 Msa1454980:intergenic
TCGTGCAAAACGACGACGTT+TGG 0.367357 tig0035556:-24870 Msa1454980:intergenic
TTCAACTCACCGACTGGAAT+CGG 0.379437 tig0035556:-24990 Msa1454980:intergenic
TCAGAAATCAAGAGATTAGA+AGG 0.379650 tig0035556:-25086 Msa1454980:intergenic
GTGGACTTGATGCTTGTCAT+AGG 0.382317 tig0035556:+25036 Msa1454980:CDS
CGATTATCTCCGATCGGGTA+TGG 0.403797 tig0035556:-24689 Msa1454980:intergenic
AGATGTGAGTGAGACGAAAA+TGG 0.409090 tig0035556:+24635 Msa1454980:exon
TCGTTCCATGACTTGGTACT+TGG 0.410864 tig0035556:-24712 Msa1454980:intergenic
TGGATGATTCAGATTCTTTG+TGG 0.414147 tig0035556:+25017 Msa1454980:CDS
TTTCTTTGAGAGCGACTGTT+AGG 0.418202 tig0035556:-24788 Msa1454980:intergenic
TCAGTGTGAGGAAAAGCTTC+AGG 0.419128 tig0035556:-25660 Msa1454980:intergenic
GAAGCGTTGCAAATACTTCA+AGG 0.457988 tig0035556:+24843 Msa1454980:CDS
TACCAAGTCATGGAACGAAT+TGG 0.458159 tig0035556:+24717 Msa1454980:CDS
AGCCAATTCGTTCCATGACT+TGG 0.460909 tig0035556:-24719 Msa1454980:intergenic
TGACAAGGATACAAACATTC+CGG 0.464010 tig0035556:+25769 Msa1454980:CDS
ATGGTTTAGAAATTGATCTC+TGG 0.464298 tig0035556:+25969 Msa1454980:CDS
AATACCTTCCTTAGCAGCAT+TGG 0.464353 tig0035556:-24967 Msa1454980:intergenic
AGGATTTGAAAATCAAGAGC+AGG 0.469179 tig0035556:+25679 Msa1454980:CDS
CGATTTCTCGGAATGCGGAT+TGG 0.470595 tig0035556:-24821 Msa1454980:intergenic
AATCTCTTGATTTCTGACTC+TGG 0.480951 tig0035556:+25092 Msa1454980:CDS
CGTGATTTCCAATGCTGCTA+AGG 0.482600 tig0035556:+24959 Msa1454980:CDS
GGTATGGATGCTCCAACTCT+TGG 0.491584 tig0035556:-24673 Msa1454980:intergenic
CAACGCTTCAACTCACCGAC+TGG 0.503842 tig0035556:-24996 Msa1454980:intergenic
CATCATGTGTTGGAACTCGC+TGG 0.513625 tig0035556:+25909 Msa1454980:CDS
GAATCCACCACCATGTGAGC+AGG 0.518133 tig0035556:+25586 Msa1454980:CDS
GTAGACGTCGGCGTAAGCTC+CGG 0.521158 tig0035556:-24742 Msa1454980:intergenic
TCCTCAAAAGCATCAAATCC+AGG 0.522415 tig0035556:-25582 Msa1454980:intergenic
GCAAGGATACTCATAGAGCC+TGG 0.534659 tig0035556:+25545 Msa1454980:CDS
CAACTCTTGGTTGCACGACC+CGG 0.537874 tig0035556:-24660 Msa1454980:intergenic
GTCATGGAACGAATTGGCTC+CGG 0.539205 tig0035556:+24723 Msa1454980:CDS
CGCTTCGATTTCTCGGAATG+CGG 0.541121 tig0035556:-24826 Msa1454980:intergenic
GAGTGAGACGAAAATGGAGC+CGG 0.544924 tig0035556:+24641 Msa1454980:exon
CATAAAGCAATTCAGGAGCC+CGG 0.551147 tig0035556:-25953 Msa1454980:intergenic
CCATCCTGCTCACATGGTGG+TGG 0.559966 tig0035556:-25609 Msa1454980:intergenic
TTTAGTTATGAAGCAATGGA+GGG 0.560361 tig0035556:+25860 Msa1454980:CDS
AGACAAGAAGTATTTCCATC+CGG 0.567599 tig0035556:-25807 Msa1454980:intergenic
TTAGAACCATCCTGCTCACA+TGG 0.568715 tig0035556:-25615 Msa1454980:intergenic
CTTAGCAGCATTGGAAATCA+CGG 0.575296 tig0035556:-24958 Msa1454980:intergenic
TAGTTATGAAGCAATGGAGG+GGG 0.576109 tig0035556:+25862 Msa1454980:CDS
ATTTCCAATGCTGCTAAGGA+AGG 0.579100 tig0035556:+24963 Msa1454980:CDS
CGGTAGCCAAATCAGTGGTA+AGG 0.581365 tig0035556:-24938 Msa1454980:intergenic
CTTGGCGATTATCTCCGATC+GGG 0.583064 tig0035556:-24694 Msa1454980:intergenic
AGTGAGACGAAAATGGAGCC+GGG 0.586781 tig0035556:+24642 Msa1454980:exon
GGATTTGAAAATCAAGAGCA+GGG 0.592388 tig0035556:+25680 Msa1454980:CDS
ACTTGGCGATTATCTCCGAT+CGG 0.592495 tig0035556:-24695 Msa1454980:intergenic
ATCTGTGGACGACGTTGACA+AGG 0.595585 tig0035556:+25754 Msa1454980:CDS
CGGGTCGTGCAACCAAGAGT+TGG 0.595800 tig0035556:+24661 Msa1454980:CDS
AATCGCCAAGTACCAAGTCA+TGG 0.610921 tig0035556:+24707 Msa1454980:CDS
CGTCGGAGAGACGACGGCCA+CGG 0.615317 tig0035556:-24764 Msa1454980:intergenic
CAGTCGGTGAGTTGAAGCGT+TGG 0.615429 tig0035556:+24997 Msa1454980:CDS
TGGCTCAAGTTGTCAGTGTG+AGG 0.616602 tig0035556:-25672 Msa1454980:intergenic
TTAGTTATGAAGCAATGGAG+GGG 0.619415 tig0035556:+25861 Msa1454980:CDS
AAGGATACAAACATTCCGGA+TGG 0.622754 tig0035556:+25773 Msa1454980:CDS
GAGAGCGACTGTTAGGTCGT+CGG 0.626780 tig0035556:-24781 Msa1454980:intergenic
GCTGAAAACAAAGAAATCTG+TGG 0.631848 tig0035556:+25739 Msa1454980:CDS
GGAATGCGGATTGGTAGTCG+TGG 0.632126 tig0035556:-24812 Msa1454980:intergenic
GGTTGTCTCACATCATGTGT+TGG 0.636428 tig0035556:+25899 Msa1454980:CDS
TTGGAGCATCCATACCCGAT+CGG 0.642375 tig0035556:+24680 Msa1454980:CDS
CCACCACCATGTGAGCAGGA+TGG 0.645160 tig0035556:+25590 Msa1454980:CDS
GAAGGTATTCCGATTCCAGT+CGG 0.672268 tig0035556:+24981 Msa1454980:CDS
GCTTACGCCGACGTCTACCG+TGG 0.675861 tig0035556:+24747 Msa1454980:CDS
GAACCATCCTGCTCACATGG+TGG 0.702156 tig0035556:-25612 Msa1454970:intergenic
AATCACGGTAGCCAAATCAG+TGG 0.707103 tig0035556:-24943 Msa1454970:intergenic
TTAGGTCGTCGGAGAGACGA+CGG 0.715160 tig0035556:-24770 Msa1454970:intergenic
ACGACGGCCACGGTAGACGT+CGG 0.716339 tig0035556:-24754 Msa1454970:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTTTATTATGATTATT+AGG + tig0035556:25390-25409 Msa1454980:intron 10.0%
!!! CATTTTTTATTATGATTATT+AGG + tig0035556:25390-25409 Msa1454980:intron 10.0%
!!! ATTTTTTCTTATATCTTGAT+CGG + tig0035556:25339-25358 Msa1454980:intron 15.0%
!!! ATTTTTTCTTATATCTTGAT+CGG + tig0035556:25339-25358 Msa1454980:intron 15.0%
!! TTAGATTGTTTAATTAACGT+TGG - tig0035556:25209-25228 Msa1454980:intergenic 20.0%
!! CACATTATATTAGTTAGATT+AGG + tig0035556:25232-25251 Msa1454980:intron 20.0%
!! TTAGATTGTTTAATTAACGT+TGG - tig0035556:25209-25228 Msa1454980:intergenic 20.0%
!! CACATTATATTAGTTAGATT+AGG + tig0035556:25232-25251 Msa1454980:intron 20.0%
! CGAAAATGATTATGGTAATT+AGG - tig0035556:25151-25170 Msa1454980:intergenic 25.0%
! AAATGGAACGAAAATGATTA+TGG - tig0035556:25159-25178 Msa1454980:intergenic 25.0%
!! ATAATCATTTTCGTTCCATT+TGG + tig0035556:25158-25177 Msa1454980:intron 25.0%
!!! ATTAAGTTGAAACAACCAAA+TGG - tig0035556:25176-25195 Msa1454980:intergenic 25.0%
!!! AGGTAGTAATATTTAGTTTG+AGG + tig0035556:25362-25381 Msa1454980:intron 25.0%
!!! TTTCATTGACTAATTTTCTC+AGG + tig0035556:25523-25542 Msa1454980:intron 25.0%
!! CTTGATTTTCAAATCCTAAA+TGG - tig0035556:25676-25695 Msa1454980:intergenic 25.0%
!!! TTCTTTTAGTTATGAAGCAA+TGG + tig0035556:25856-25875 Msa1454980:CDS 25.0%
! CGAAAATGATTATGGTAATT+AGG - tig0035556:25151-25170 Msa1454980:intergenic 25.0%
! AAATGGAACGAAAATGATTA+TGG - tig0035556:25159-25178 Msa1454980:intergenic 25.0%
!! ATAATCATTTTCGTTCCATT+TGG + tig0035556:25158-25177 Msa1454980:intron 25.0%
!!! ATTAAGTTGAAACAACCAAA+TGG - tig0035556:25176-25195 Msa1454980:intergenic 25.0%
!!! AGGTAGTAATATTTAGTTTG+AGG + tig0035556:25362-25381 Msa1454980:intron 25.0%
!!! TTTCATTGACTAATTTTCTC+AGG + tig0035556:25523-25542 Msa1454980:intron 25.0%
!! CTTGATTTTCAAATCCTAAA+TGG - tig0035556:25676-25695 Msa1454980:intergenic 25.0%
!!! TTCTTTTAGTTATGAAGCAA+TGG + tig0035556:25856-25875 Msa1454980:CDS 25.0%
TCAGAAATCAAGAGATTAGA+AGG - tig0035556:25089-25108 Msa1454980:intergenic 30.0%
CGCAAAAAACACAAAAATCA+AGG - tig0035556:25319-25338 Msa1454980:intergenic 30.0%
! TTTTCTTATATCTTGATCGG+AGG + tig0035556:25342-25361 Msa1454980:intron 30.0%
!! ATTATTAGGCGCTGTATTTT+AGG + tig0035556:25404-25423 Msa1454980:intron 30.0%
!! TTTTAGTTATGAAGCAATGG+AGG + tig0035556:25859-25878 Msa1454980:CDS 30.0%
TTTAGTTATGAAGCAATGGA+GGG + tig0035556:25860-25879 Msa1454980:CDS 30.0%
CTTTATGGATCTGCAAATTA+TGG + tig0035556:25950-25969 Msa1454980:CDS 30.0%
ATGGTTTAGAAATTGATCTC+TGG + tig0035556:25969-25988 Msa1454980:CDS 30.0%
TCAGAAATCAAGAGATTAGA+AGG - tig0035556:25089-25108 Msa1454980:intergenic 30.0%
CGCAAAAAACACAAAAATCA+AGG - tig0035556:25319-25338 Msa1454980:intergenic 30.0%
! TTTTCTTATATCTTGATCGG+AGG + tig0035556:25342-25361 Msa1454980:intron 30.0%
!! ATTATTAGGCGCTGTATTTT+AGG + tig0035556:25404-25423 Msa1454980:intron 30.0%
!! TTTTAGTTATGAAGCAATGG+AGG + tig0035556:25859-25878 Msa1454980:CDS 30.0%
TTTAGTTATGAAGCAATGGA+GGG + tig0035556:25860-25879 Msa1454980:CDS 30.0%
CTTTATGGATCTGCAAATTA+TGG + tig0035556:25950-25969 Msa1454980:CDS 30.0%
ATGGTTTAGAAATTGATCTC+TGG + tig0035556:25969-25988 Msa1454980:CDS 30.0%
TGGATGATTCAGATTCTTTG+TGG + tig0035556:25017-25036 Msa1454980:CDS 35.0%
AATCTCTTGATTTCTGACTC+TGG + tig0035556:25092-25111 Msa1454980:CDS 35.0%
!! GTTCTCAAATTGGCTGATTT+TGG + tig0035556:25116-25135 Msa1454980:CDS 35.0%
AAAAACCTTATGCGCTTCTT+TGG - tig0035556:25488-25507 Msa1454980:intergenic 35.0%
! TTGACTAATTTTCTCAGGCA+AGG + tig0035556:25528-25547 Msa1454980:intron 35.0%
AGGATTTGAAAATCAAGAGC+AGG + tig0035556:25679-25698 Msa1454980:CDS 35.0%
GGATTTGAAAATCAAGAGCA+GGG + tig0035556:25680-25699 Msa1454980:CDS 35.0%
GCTGAAAACAAAGAAATCTG+TGG + tig0035556:25739-25758 Msa1454980:CDS 35.0%
TGACAAGGATACAAACATTC+CGG + tig0035556:25769-25788 Msa1454980:CDS 35.0%
!! AGACAAGAAGTATTTCCATC+CGG - tig0035556:25791-25810 Msa1454980:intergenic 35.0%
TTAGTTATGAAGCAATGGAG+GGG + tig0035556:25861-25880 Msa1454980:CDS 35.0%
TGGATGATTCAGATTCTTTG+TGG + tig0035556:25017-25036 Msa1454980:CDS 35.0%
AATCTCTTGATTTCTGACTC+TGG + tig0035556:25092-25111 Msa1454980:CDS 35.0%
!! GTTCTCAAATTGGCTGATTT+TGG + tig0035556:25116-25135 Msa1454980:CDS 35.0%
AAAAACCTTATGCGCTTCTT+TGG - tig0035556:25488-25507 Msa1454980:intergenic 35.0%
! TTGACTAATTTTCTCAGGCA+AGG + tig0035556:25528-25547 Msa1454980:intron 35.0%
AGGATTTGAAAATCAAGAGC+AGG + tig0035556:25679-25698 Msa1454980:CDS 35.0%
GGATTTGAAAATCAAGAGCA+GGG + tig0035556:25680-25699 Msa1454980:CDS 35.0%
GCTGAAAACAAAGAAATCTG+TGG + tig0035556:25739-25758 Msa1454980:CDS 35.0%
TGACAAGGATACAAACATTC+CGG + tig0035556:25769-25788 Msa1454980:CDS 35.0%
!! AGACAAGAAGTATTTCCATC+CGG - tig0035556:25791-25810 Msa1454980:intergenic 35.0%
TTAGTTATGAAGCAATGGAG+GGG + tig0035556:25861-25880 Msa1454980:CDS 35.0%
AGATGTGAGTGAGACGAAAA+TGG + tig0035556:24635-24654 Msa1454980:exon 40.0%
TACCAAGTCATGGAACGAAT+TGG + tig0035556:24717-24736 Msa1454980:CDS 40.0%
! TTTCTTTGAGAGCGACTGTT+AGG - tig0035556:24791-24810 Msa1454980:intergenic 40.0%
TTTGCAACGCTTCGATTTCT+CGG - tig0035556:24836-24855 Msa1454980:intergenic 40.0%
!! GAAGCGTTGCAAATACTTCA+AGG + tig0035556:24843-24862 Msa1454980:CDS 40.0%
! TCGTTTTGCACGAATACTTC+TGG + tig0035556:24880-24899 Msa1454980:CDS 40.0%
! TGAGTACCTTACCACTGATT+TGG + tig0035556:24932-24951 Msa1454980:CDS 40.0%
! CTTAGCAGCATTGGAAATCA+CGG - tig0035556:24961-24980 Msa1454980:intergenic 40.0%
ATTTCCAATGCTGCTAAGGA+AGG + tig0035556:24963-24982 Msa1454980:CDS 40.0%
AATACCTTCCTTAGCAGCAT+TGG - tig0035556:24970-24989 Msa1454980:intergenic 40.0%
TGACTCTGGTGTTCTCAAAT+TGG + tig0035556:25106-25125 Msa1454980:CDS 40.0%
!! CAAATTGGCTGATTTTGGAC+AGG + tig0035556:25121-25140 Msa1454980:CDS 40.0%
TAGTTAGATTAGGATCGCGA+TGG + tig0035556:25242-25261 Msa1454980:intron 40.0%
! AAGCGCATAAGGTTTTTGTC+TGG + tig0035556:25491-25510 Msa1454980:intron 40.0%
!! TCCTCAAAAGCATCAAATCC+AGG - tig0035556:25566-25585 Msa1454980:intergenic 40.0%
ACTGACAACTTGAGCCATTT+AGG + tig0035556:25659-25678 Msa1454980:CDS 40.0%
AAGGATACAAACATTCCGGA+TGG + tig0035556:25773-25792 Msa1454980:CDS 40.0%
TAGTTATGAAGCAATGGAGG+GGG + tig0035556:25862-25881 Msa1454980:CDS 40.0%
GCAGATCCATAAAGCAATTC+AGG - tig0035556:25944-25963 Msa1454980:intergenic 40.0%
GAAATTGATCTCTGGTCACT+TGG + tig0035556:25977-25996 Msa1454980:CDS 40.0%
AGATGTGAGTGAGACGAAAA+TGG + tig0035556:24635-24654 Msa1454980:exon 40.0%
TACCAAGTCATGGAACGAAT+TGG + tig0035556:24717-24736 Msa1454980:CDS 40.0%
! TTTCTTTGAGAGCGACTGTT+AGG - tig0035556:24791-24810 Msa1454980:intergenic 40.0%
TTTGCAACGCTTCGATTTCT+CGG - tig0035556:24836-24855 Msa1454980:intergenic 40.0%
!! GAAGCGTTGCAAATACTTCA+AGG + tig0035556:24843-24862 Msa1454980:CDS 40.0%
! TCGTTTTGCACGAATACTTC+TGG + tig0035556:24880-24899 Msa1454980:CDS 40.0%
! TGAGTACCTTACCACTGATT+TGG + tig0035556:24932-24951 Msa1454980:CDS 40.0%
! CTTAGCAGCATTGGAAATCA+CGG - tig0035556:24961-24980 Msa1454980:intergenic 40.0%
ATTTCCAATGCTGCTAAGGA+AGG + tig0035556:24963-24982 Msa1454980:CDS 40.0%
AATACCTTCCTTAGCAGCAT+TGG - tig0035556:24970-24989 Msa1454980:intergenic 40.0%
TGACTCTGGTGTTCTCAAAT+TGG + tig0035556:25106-25125 Msa1454980:CDS 40.0%
!! CAAATTGGCTGATTTTGGAC+AGG + tig0035556:25121-25140 Msa1454980:CDS 40.0%
TAGTTAGATTAGGATCGCGA+TGG + tig0035556:25242-25261 Msa1454980:intron 40.0%
! AAGCGCATAAGGTTTTTGTC+TGG + tig0035556:25491-25510 Msa1454980:intron 40.0%
!! TCCTCAAAAGCATCAAATCC+AGG - tig0035556:25566-25585 Msa1454980:intergenic 40.0%
ACTGACAACTTGAGCCATTT+AGG + tig0035556:25659-25678 Msa1454980:CDS 40.0%
AAGGATACAAACATTCCGGA+TGG + tig0035556:25773-25792 Msa1454980:CDS 40.0%
TAGTTATGAAGCAATGGAGG+GGG + tig0035556:25862-25881 Msa1454980:CDS 40.0%
GCAGATCCATAAAGCAATTC+AGG - tig0035556:25944-25963 Msa1454980:intergenic 40.0%
GAAATTGATCTCTGGTCACT+TGG + tig0035556:25977-25996 Msa1454980:CDS 40.0%
ACTTGGCGATTATCTCCGAT+CGG - tig0035556:24698-24717 Msa1454980:intergenic 45.0%
AATCGCCAAGTACCAAGTCA+TGG + tig0035556:24707-24726 Msa1454980:CDS 45.0%
!! TCGTTCCATGACTTGGTACT+TGG - tig0035556:24715-24734 Msa1454980:intergenic 45.0%
AGCCAATTCGTTCCATGACT+TGG - tig0035556:24722-24741 Msa1454980:intergenic 45.0%
AATCACGGTAGCCAAATCAG+TGG - tig0035556:24946-24965 Msa1454980:intergenic 45.0%
CGTGATTTCCAATGCTGCTA+AGG + tig0035556:24959-24978 Msa1454980:CDS 45.0%
!! GAAGGTATTCCGATTCCAGT+CGG + tig0035556:24981-25000 Msa1454980:CDS 45.0%
! TTCAACTCACCGACTGGAAT+CGG - tig0035556:24993-25012 Msa1454980:intergenic 45.0%
GTGGACTTGATGCTTGTCAT+AGG + tig0035556:25036-25055 Msa1454980:CDS 45.0%
TGGATGCAATTGCACAACAC+TGG - tig0035556:25468-25487 Msa1454980:intergenic 45.0%
! TGCATCCAAAGAAGCGCATA+AGG + tig0035556:25480-25499 Msa1454980:intron 45.0%
! GCCTGGATTTGATGCTTTTG+AGG + tig0035556:25562-25581 Msa1454980:CDS 45.0%
TTAGAACCATCCTGCTCACA+TGG - tig0035556:25599-25618 Msa1454980:intergenic 45.0%
TCAGTGTGAGGAAAAGCTTC+AGG - tig0035556:25644-25663 Msa1454980:intergenic 45.0%
GAGGGGGAAGATAAAGAACA+TGG + tig0035556:25878-25897 Msa1454980:CDS 45.0%
GGTTGTCTCACATCATGTGT+TGG + tig0035556:25899-25918 Msa1454980:CDS 45.0%
CATAAAGCAATTCAGGAGCC+CGG - tig0035556:25937-25956 Msa1454980:intergenic 45.0%
ACTTGGCGATTATCTCCGAT+CGG - tig0035556:24698-24717 Msa1454980:intergenic 45.0%
AATCGCCAAGTACCAAGTCA+TGG + tig0035556:24707-24726 Msa1454980:CDS 45.0%
!! TCGTTCCATGACTTGGTACT+TGG - tig0035556:24715-24734 Msa1454980:intergenic 45.0%
AGCCAATTCGTTCCATGACT+TGG - tig0035556:24722-24741 Msa1454980:intergenic 45.0%
AATCACGGTAGCCAAATCAG+TGG - tig0035556:24946-24965 Msa1454980:intergenic 45.0%
CGTGATTTCCAATGCTGCTA+AGG + tig0035556:24959-24978 Msa1454980:CDS 45.0%
!! GAAGGTATTCCGATTCCAGT+CGG + tig0035556:24981-25000 Msa1454980:CDS 45.0%
! TTCAACTCACCGACTGGAAT+CGG - tig0035556:24993-25012 Msa1454980:intergenic 45.0%
GTGGACTTGATGCTTGTCAT+AGG + tig0035556:25036-25055 Msa1454980:CDS 45.0%
TGGATGCAATTGCACAACAC+TGG - tig0035556:25468-25487 Msa1454980:intergenic 45.0%
! TGCATCCAAAGAAGCGCATA+AGG + tig0035556:25480-25499 Msa1454980:intron 45.0%
! GCCTGGATTTGATGCTTTTG+AGG + tig0035556:25562-25581 Msa1454980:CDS 45.0%
TTAGAACCATCCTGCTCACA+TGG - tig0035556:25599-25618 Msa1454980:intergenic 45.0%
TCAGTGTGAGGAAAAGCTTC+AGG - tig0035556:25644-25663 Msa1454980:intergenic 45.0%
GAGGGGGAAGATAAAGAACA+TGG + tig0035556:25878-25897 Msa1454980:CDS 45.0%
GGTTGTCTCACATCATGTGT+TGG + tig0035556:25899-25918 Msa1454980:CDS 45.0%
CATAAAGCAATTCAGGAGCC+CGG - tig0035556:25937-25956 Msa1454980:intergenic 45.0%
GAGTGAGACGAAAATGGAGC+CGG + tig0035556:24641-24660 Msa1454980:exon 50.0%
AGTGAGACGAAAATGGAGCC+GGG + tig0035556:24642-24661 Msa1454980:exon 50.0%
GGTATGGATGCTCCAACTCT+TGG - tig0035556:24676-24695 Msa1454980:intergenic 50.0%
! TTGGAGCATCCATACCCGAT+CGG + tig0035556:24680-24699 Msa1454980:CDS 50.0%
CGATTATCTCCGATCGGGTA+TGG - tig0035556:24692-24711 Msa1454980:intergenic 50.0%
CTTGGCGATTATCTCCGATC+GGG - tig0035556:24697-24716 Msa1454980:intergenic 50.0%
! GTCATGGAACGAATTGGCTC+CGG + tig0035556:24723-24742 Msa1454980:CDS 50.0%
CGATTTCTCGGAATGCGGAT+TGG - tig0035556:24824-24843 Msa1454980:intergenic 50.0%
CGCTTCGATTTCTCGGAATG+CGG - tig0035556:24829-24848 Msa1454980:intergenic 50.0%
TCGTGCAAAACGACGACGTT+TGG - tig0035556:24873-24892 Msa1454980:intergenic 50.0%
CGGTAGCCAAATCAGTGGTA+AGG - tig0035556:24941-24960 Msa1454980:intergenic 50.0%
GCAAGGATACTCATAGAGCC+TGG + tig0035556:25545-25564 Msa1454980:CDS 50.0%
! TGGCTCAAGTTGTCAGTGTG+AGG - tig0035556:25656-25675 Msa1454980:intergenic 50.0%
ATCTGTGGACGACGTTGACA+AGG + tig0035556:25754-25773 Msa1454980:CDS 50.0%
CATCATGTGTTGGAACTCGC+TGG + tig0035556:25909-25928 Msa1454980:CDS 50.0%
CGGGCTCCTGAATTGCTTTA+TGG + tig0035556:25935-25954 Msa1454980:CDS 50.0%
GAGTGAGACGAAAATGGAGC+CGG + tig0035556:24641-24660 Msa1454980:exon 50.0%
AGTGAGACGAAAATGGAGCC+GGG + tig0035556:24642-24661 Msa1454980:exon 50.0%
GGTATGGATGCTCCAACTCT+TGG - tig0035556:24676-24695 Msa1454980:intergenic 50.0%
! TTGGAGCATCCATACCCGAT+CGG + tig0035556:24680-24699 Msa1454980:CDS 50.0%
CGATTATCTCCGATCGGGTA+TGG - tig0035556:24692-24711 Msa1454980:intergenic 50.0%
CTTGGCGATTATCTCCGATC+GGG - tig0035556:24697-24716 Msa1454980:intergenic 50.0%
! GTCATGGAACGAATTGGCTC+CGG + tig0035556:24723-24742 Msa1454980:CDS 50.0%
CGATTTCTCGGAATGCGGAT+TGG - tig0035556:24824-24843 Msa1454980:intergenic 50.0%
CGCTTCGATTTCTCGGAATG+CGG - tig0035556:24829-24848 Msa1454980:intergenic 50.0%
TCGTGCAAAACGACGACGTT+TGG - tig0035556:24873-24892 Msa1454980:intergenic 50.0%
CGGTAGCCAAATCAGTGGTA+AGG - tig0035556:24941-24960 Msa1454980:intergenic 50.0%
GCAAGGATACTCATAGAGCC+TGG + tig0035556:25545-25564 Msa1454980:CDS 50.0%
! TGGCTCAAGTTGTCAGTGTG+AGG - tig0035556:25656-25675 Msa1454980:intergenic 50.0%
ATCTGTGGACGACGTTGACA+AGG + tig0035556:25754-25773 Msa1454980:CDS 50.0%
CATCATGTGTTGGAACTCGC+TGG + tig0035556:25909-25928 Msa1454980:CDS 50.0%
CGGGCTCCTGAATTGCTTTA+TGG + tig0035556:25935-25954 Msa1454980:CDS 50.0%
CAACTCTTGGTTGCACGACC+CGG - tig0035556:24663-24682 Msa1454980:intergenic 55.0%
TTAGGTCGTCGGAGAGACGA+CGG - tig0035556:24773-24792 Msa1454980:intergenic 55.0%
GAGAGCGACTGTTAGGTCGT+CGG - tig0035556:24784-24803 Msa1454980:intergenic 55.0%
!! GGAATGCGGATTGGTAGTCG+TGG - tig0035556:24815-24834 Msa1454980:intergenic 55.0%
CAACGCTTCAACTCACCGAC+TGG - tig0035556:24999-25018 Msa1454980:intergenic 55.0%
! CAGTCGGTGAGTTGAAGCGT+TGG + tig0035556:24997-25016 Msa1454980:CDS 55.0%
GAATCCACCACCATGTGAGC+AGG + tig0035556:25586-25605 Msa1454980:CDS 55.0%
GAACCATCCTGCTCACATGG+TGG - tig0035556:25596-25615 Msa1454980:intergenic 55.0%
!! GTGTTGGAACTCGCTGGTTC+CGG + tig0035556:25915-25934 Msa1454980:CDS 55.0%
!! TGTTGGAACTCGCTGGTTCC+GGG + tig0035556:25916-25935 Msa1454980:CDS 55.0%
CAACTCTTGGTTGCACGACC+CGG - tig0035556:24663-24682 Msa1454980:intergenic 55.0%
TTAGGTCGTCGGAGAGACGA+CGG - tig0035556:24773-24792 Msa1454980:intergenic 55.0%
GAGAGCGACTGTTAGGTCGT+CGG - tig0035556:24784-24803 Msa1454980:intergenic 55.0%
!! GGAATGCGGATTGGTAGTCG+TGG - tig0035556:24815-24834 Msa1454980:intergenic 55.0%
CAACGCTTCAACTCACCGAC+TGG - tig0035556:24999-25018 Msa1454980:intergenic 55.0%
! CAGTCGGTGAGTTGAAGCGT+TGG + tig0035556:24997-25016 Msa1454980:CDS 55.0%
GAATCCACCACCATGTGAGC+AGG + tig0035556:25586-25605 Msa1454980:CDS 55.0%
GAACCATCCTGCTCACATGG+TGG - tig0035556:25596-25615 Msa1454980:intergenic 55.0%
!! GTGTTGGAACTCGCTGGTTC+CGG + tig0035556:25915-25934 Msa1454980:CDS 55.0%
!! TGTTGGAACTCGCTGGTTCC+GGG + tig0035556:25916-25935 Msa1454980:CDS 55.0%
CGGGTCGTGCAACCAAGAGT+TGG + tig0035556:24661-24680 Msa1454980:CDS 60.0%
GTAGACGTCGGCGTAAGCTC+CGG - tig0035556:24745-24764 Msa1454980:intergenic 60.0%
CCATCCTGCTCACATGGTGG+TGG - tig0035556:25593-25612 Msa1454980:intergenic 60.0%
CCACCACCATGTGAGCAGGA+TGG + tig0035556:25590-25609 Msa1454980:CDS 60.0%
CGGGTCGTGCAACCAAGAGT+TGG + tig0035556:24661-24680 Msa1454980:CDS 60.0%
GTAGACGTCGGCGTAAGCTC+CGG - tig0035556:24745-24764 Msa1454980:intergenic 60.0%
CCATCCTGCTCACATGGTGG+TGG - tig0035556:25593-25612 Msa1454980:intergenic 60.0%
CCACCACCATGTGAGCAGGA+TGG + tig0035556:25590-25609 Msa1454980:CDS 60.0%
GCTTACGCCGACGTCTACCG+TGG + tig0035556:24747-24766 Msa1454980:CDS 65.0%
ACGACGGCCACGGTAGACGT+CGG - tig0035556:24757-24776 Msa1454980:intergenic 65.0%
GCTTACGCCGACGTCTACCG+TGG + tig0035556:24747-24766 Msa1454980:CDS 65.0%
ACGACGGCCACGGTAGACGT+CGG - tig0035556:24757-24776 Msa1454980:intergenic 65.0%
CGTCGGAGAGACGACGGCCA+CGG - tig0035556:24767-24786 Msa1454980:intergenic 70.0%
CGTCGGAGAGACGACGGCCA+CGG - tig0035556:24767-24786 Msa1454980:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0035556 gene 24591 26000 24591 ID=Msa1454980;Name=Msa1454980
tig0035556 mRNA 24591 26000 24591 ID=Msa1454980-mRNA-1;Parent=Msa1454980;Name=Msa1454980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=63|1|0.5|1|1|1|2|0|315
tig0035556 exon 24591 25142 24591 ID=Msa1454980-mRNA-1:exon:20049;Parent=Msa1454980-mRNA-1
tig0035556 exon 25545 26000 25545 ID=Msa1454980-mRNA-1:exon:20050;Parent=Msa1454980-mRNA-1
tig0035556 five_prime_UTR 24591 24653 24591 ID=Msa1454980-mRNA-1:five_prime_utr;Parent=Msa1454980-mRNA-1
tig0035556 CDS 24654 25142 24654 ID=Msa1454980-mRNA-1:cds;Parent=Msa1454980-mRNA-1
tig0035556 CDS 25545 26000 25545 ID=Msa1454980-mRNA-1:cds;Parent=Msa1454980-mRNA-1
Gene Sequence

>Msa1454980

ATGGAGCCGGGTCGTGCAACCAAGAGTTGGAGCATCCATACCCGATCGGAGATAATCGCCAAGTACCAAGTCATGGAACGAATTGGCTCCGGAGCTTACGCCGACGTCTACCGTGGCCGTCGTCTCTCCGACGACCTAACAGTCGCTCTCAAAGAAATCCACGACTACCAATCCGCATTCCGAGAAATCGAAGCGTTGCAAATACTTCAAGGCTCTCCAAACGTCGTCGTTTTGCACGAATACTTCTGGCGAGACGATGAAGACGCTGTTCTCGTTCTTGAGTACCTTACCACTGATTTGGCTACCGTGATTTCCAATGCTGCTAAGGAAGGTATTCCGATTCCAGTCGGTGAGTTGAAGCGTTGGATGATTCAGATTCTTTGTGGACTTGATGCTTGTCATAGGAATATGATTGTTCATCGTGATCTGAAGCCTTCTAATCTCTTGATTTCTGACTCTGGTGTTCTCAAATTGGCTGATTTTGGACAGGCAAGGATACTCATAGAGCCTGGATTTGATGCTTTTGAGGAGAATCCACCACCATGTGAGCAGGATGGTTCTAATCATGAAAGTTCACTTCATCATCCTGAAGCTTTTCCTCACACTGACAACTTGAGCCATTTAGGATTTGAAAATCAAGAGCAGGGAAGCAGTCATGAAGAGTATTTTAGTGTCTTAGATGAGCTGAAAACAAAGAAATCTGTGGACGACGTTGACAAGGATACAAACATTCCGGATGGAAATACTTCTTGTCTTGCAACGTGCACAACAAGTGATATCGATAACGATACTATGAAAACTTCTTTTAGTTATGAAGCAATGGAGGGGGAAGATAAAGAACATGGTTGTCTCACATCATGTGTTGGAACTCGCTGGTTCCGGGCTCCTGAATTGCTTTATGGATCTGCAAATTATGGTTTAGAAATTGATCTCTGGTCACTTGGA

Protein sequence

>Msa1454980

MEPGRATKSWSIHTRSEIIAKYQVMERIGSGAYADVYRGRRLSDDLTVALKEIHDYQSAFREIEALQILQGSPNVVVLHEYFWRDDEDAVLVLEYLTTDLATVISNAAKEGIPIPVGELKRWMIQILCGLDACHRNMIVHRDLKPSNLLISDSGVLKLADFGQARILIEPGFDAFEENPPPCEQDGSNHESSLHHPEAFPHTDNLSHLGFENQEQGSSHEEYFSVLDELKTKKSVDDVDKDTNIPDGNTSCLATCTTSDIDNDTMKTSFSYEAMEGEDKEHGCLTSCVGTRWFRAPELLYGSANYGLEIDLWSLG